BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1804c

Length=108
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841274|ref|NP_336311.1|  hypothetical protein MT1854 [Mycoba...   222    2e-56
gi|289554423|ref|ZP_06443633.1|  conserved hypothetical protein [...   222    2e-56
gi|15608941|ref|NP_216320.1|  hypothetical protein Rv1804c [Mycob...   221    2e-56
gi|340626814|ref|YP_004745266.1|  hypothetical protein MCAN_18201...   220    6e-56
gi|167967401|ref|ZP_02549678.1|  hypothetical protein MtubH3_0492...   214    5e-54
gi|183982693|ref|YP_001850984.1|  hypothetical protein MMAR_2686 ...   116    9e-25
gi|41407621|ref|NP_960457.1|  hypothetical protein MAP1523 [Mycob...   113    7e-24
gi|167967395|ref|ZP_02549672.1|  hypothetical protein MtubH3_0489...   110    7e-23
gi|15841280|ref|NP_336317.1|  hypothetical protein MT1858 [Mycoba...   110    7e-23
gi|15608947|ref|NP_216326.1|  hypothetical protein Rv1810 [Mycoba...   110    9e-23
gi|289443284|ref|ZP_06433028.1|  conserved hypothetical protein [...   110    9e-23
gi|254231992|ref|ZP_04925319.1|  conserved hypothetical protein [...   107    7e-22
gi|254775379|ref|ZP_05216895.1|  hypothetical protein MaviaA2_120...   106    1e-21
gi|240173096|ref|ZP_04751754.1|  hypothetical protein MkanA1_2753...   104    5e-21
gi|254823256|ref|ZP_05228257.1|  hypothetical protein MintA_25224...   104    5e-21
gi|118465508|ref|YP_882090.1|  hypothetical protein MAV_2904 [Myc...   102    2e-20
gi|254823260|ref|ZP_05228261.1|  hypothetical protein MintA_25244...   100    1e-19
gi|296164795|ref|ZP_06847355.1|  conserved hypothetical protein [...  97.4    6e-19
gi|183983439|ref|YP_001851730.1|  hypothetical protein MMAR_3450 ...  93.2    1e-17
gi|254823283|ref|ZP_05228284.1|  hypothetical protein MintA_25369...  92.8    2e-17
gi|118466879|ref|YP_882536.1|  hypothetical protein MAV_3354 [Myc...  92.4    2e-17
gi|342861290|ref|ZP_08717938.1|  hypothetical protein MCOL_20501 ...  92.0    2e-17
gi|254823259|ref|ZP_05228260.1|  hypothetical protein MintA_25239...  91.7    3e-17
gi|118618176|ref|YP_906508.1|  hypothetical protein MUL_2724 [Myc...  91.3    4e-17
gi|41407252|ref|NP_960088.1|  hypothetical protein MAP1154 [Mycob...  90.1    9e-17
gi|254776404|ref|ZP_05217920.1|  hypothetical protein MaviaA2_172...  89.0    2e-16
gi|254775796|ref|ZP_05217312.1|  hypothetical protein MaviaA2_141...  85.9    2e-15
gi|333989793|ref|YP_004522407.1|  hypothetical protein JDM601_115...  85.5    2e-15
gi|254821156|ref|ZP_05226157.1|  hypothetical protein MintA_14562...  85.1    3e-15
gi|296164793|ref|ZP_06847353.1|  conserved hypothetical protein [...  85.1    3e-15
gi|333991945|ref|YP_004524559.1|  hypothetical protein JDM601_330...  84.3    5e-15
gi|333992834|ref|YP_004525448.1|  hypothetical protein JDM601_419...  84.0    6e-15
gi|254818543|ref|ZP_05223544.1|  hypothetical protein MintA_01396...  84.0    8e-15
gi|41407618|ref|NP_960454.1|  hypothetical protein MAP1520 [Mycob...  84.0    8e-15
gi|254775384|ref|ZP_05216900.1|  hypothetical protein MaviaA2_120...  83.6    9e-15
gi|342861294|ref|ZP_08717942.1|  hypothetical protein MCOL_20521 ...  83.6    1e-14
gi|254818542|ref|ZP_05223543.1|  hypothetical protein MintA_01391...  82.8    1e-14
gi|118465355|ref|YP_882735.1|  hypothetical protein MAV_3557 [Myc...  82.8    2e-14
gi|342861289|ref|ZP_08717937.1|  hypothetical protein MCOL_20496 ...  82.4    2e-14
gi|254775999|ref|ZP_05217515.1|  hypothetical protein MaviaA2_152...  82.4    2e-14
gi|41408883|ref|NP_961719.1|  hypothetical protein MAP2785c [Myco...  82.0    3e-14
gi|342858464|ref|ZP_08715119.1|  hypothetical protein MCOL_06301 ...  81.6    3e-14
gi|296169238|ref|ZP_06850891.1|  conserved hypothetical protein [...  81.3    5e-14
gi|336459289|gb|EGO38233.1|  Protein of unknown function (DUF732)...  80.1    9e-14
gi|240169301|ref|ZP_04747960.1|  hypothetical protein MkanA1_0830...  80.1    9e-14
gi|41409256|ref|NP_962092.1|  hypothetical protein MAP3158c [Myco...  80.1    1e-13
gi|118463814|ref|YP_882093.1|  hypothetical protein MAV_2907 [Myc...  79.3    2e-13
gi|333989644|ref|YP_004522258.1|  hypothetical protein JDM601_100...  79.0    2e-13
gi|41408884|ref|NP_961720.1|  hypothetical protein MAP2786c [Myco...  77.8    5e-13
gi|336457566|gb|EGO36571.1|  Protein of unknown function (DUF732)...  76.6    1e-12


>gi|15841274|ref|NP_336311.1| hypothetical protein MT1854 [Mycobacterium tuberculosis CDC1551]
 gi|13881502|gb|AAK46125.1| hypothetical protein MT1854 [Mycobacterium tuberculosis CDC1551]
Length=122

 Score =  222 bits (565),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%), Gaps = 0/108 (0%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE  60
            MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE
Sbjct  15   MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE  74

Query  61   SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK  108
            SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK
Sbjct  75   SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK  122


>gi|289554423|ref|ZP_06443633.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289439055|gb|EFD21548.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
Length=110

 Score =  222 bits (565),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%), Gaps = 0/108 (0%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE  60
            MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE
Sbjct  3    MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE  62

Query  61   SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK  108
            SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK
Sbjct  63   SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK  110


>gi|15608941|ref|NP_216320.1| hypothetical protein Rv1804c [Mycobacterium tuberculosis H37Rv]
 gi|31792993|ref|NP_855486.1| hypothetical protein Mb1833c [Mycobacterium bovis AF2122/97]
 gi|121637706|ref|YP_977929.1| hypothetical protein BCG_1837c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 59 more sequence titles
 Length=108

 Score =  221 bits (564),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%), Gaps = 0/108 (0%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE  60
            MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE
Sbjct  1    MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE  60

Query  61   SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK  108
            SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK
Sbjct  61   SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK  108


>gi|340626814|ref|YP_004745266.1| hypothetical protein MCAN_18201 [Mycobacterium canettii CIPT 
140010059]
 gi|340005004|emb|CCC44152.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=108

 Score =  220 bits (560),  Expect = 6e-56, Method: Compositional matrix adjust.
 Identities = 107/108 (99%), Positives = 107/108 (99%), Gaps = 0/108 (0%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE  60
            MR VSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE
Sbjct  1    MRAVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE  60

Query  61   SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK  108
            SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK
Sbjct  61   SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK  108


>gi|167967401|ref|ZP_02549678.1| hypothetical protein MtubH3_04927 [Mycobacterium tuberculosis 
H37Ra]
 gi|254550813|ref|ZP_05141260.1| hypothetical protein Mtube_10201 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|298525300|ref|ZP_07012709.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 12 more sequence titles
 Length=105

 Score =  214 bits (544),  Expect = 5e-54, Method: Compositional matrix adjust.
 Identities = 104/105 (99%), Positives = 105/105 (100%), Gaps = 0/105 (0%)

Query  4    VSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGE  63
            +STLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGE
Sbjct  1    MSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGE  60

Query  64   SGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK  108
            SGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK
Sbjct  61   SGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK  105


>gi|183982693|ref|YP_001850984.1| hypothetical protein MMAR_2686 [Mycobacterium marinum M]
 gi|183176019|gb|ACC41129.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=106

 Score =  116 bits (291),  Expect = 9e-25, Method: Compositional matrix adjust.
 Identities = 54/104 (52%), Positives = 75/104 (73%), Gaps = 3/104 (2%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPS---GDDAVFLASLERAGITYSHPDQAIASGKAVCA  57
            M+ +  LL +  MI LA PAHA P    GDD  FLA+L+ AGITYS+PDQAI S KAVC 
Sbjct  1    MKTLFALLGLSAMIWLAAPAHAHPDEGGGDDVGFLAALQNAGITYSNPDQAIGSAKAVCW  60

Query  58   LVESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT  101
             ++ GESGL++V++++T NPGF+M+   +FA ++A  YCPH ++
Sbjct  61   CLDGGESGLELVHDVKTHNPGFNMEAASQFAVLAATYYCPHHLS  104


>gi|41407621|ref|NP_960457.1| hypothetical protein MAP1523 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395974|gb|AAS03840.1| hypothetical protein MAP_1523 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336457573|gb|EGO36578.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=106

 Score =  113 bits (283),  Expect = 7e-24, Method: Compositional matrix adjust.
 Identities = 54/101 (54%), Positives = 72/101 (72%), Gaps = 1/101 (0%)

Query  1    MRVVSTLLSI-PLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALV  59
            M+ V  LL I    +G   PA A P GDDA FLASL+++GITYS P Q IAS KAVC L+
Sbjct  1    MKRVLALLGIGAAALGYTAPARAEPQGDDAAFLASLDQSGITYSSPVQVIASAKAVCGLM  60

Query  60   ESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI  100
              GE+GLQVV +++ +NPG +MDG  +FAA++++ YCPH +
Sbjct  61   GRGETGLQVVTDIKDQNPGMTMDGAAQFAALASNAYCPHHL  101


>gi|167967395|ref|ZP_02549672.1| hypothetical protein MtubH3_04897 [Mycobacterium tuberculosis 
H37Ra]
 gi|254550818|ref|ZP_05141265.1| hypothetical protein Mtube_10226 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|308231946|ref|ZP_07414364.2| hypothetical protein TMAG_01985 [Mycobacterium tuberculosis SUMu001]
 26 more sequence titles
 Length=104

 Score =  110 bits (275),  Expect = 7e-23, Method: Compositional matrix adjust.
 Identities = 52/98 (54%), Positives = 69/98 (71%), Gaps = 0/98 (0%)

Query  3   VVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESG  62
           +V+ LLS   MIGLA P  A P+GDDA FLA+L++AGITY+ P  AI + KA+C L  +G
Sbjct  2   LVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANG  61

Query  63  ESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI  100
            +GLQ+V +LR  NPG +MD   KFAAI++  YCP  +
Sbjct  62  VTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  99


>gi|15841280|ref|NP_336317.1| hypothetical protein MT1858 [Mycobacterium tuberculosis CDC1551]
 gi|13881509|gb|AAK46131.1| hypothetical protein MT1858 [Mycobacterium tuberculosis CDC1551]
Length=135

 Score =  110 bits (275),  Expect = 7e-23, Method: Compositional matrix adjust.
 Identities = 52/98 (54%), Positives = 69/98 (71%), Gaps = 0/98 (0%)

Query  3    VVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESG  62
            +V+ LLS   MIGLA P  A P+GDDA FLA+L++AGITY+ P  AI + KA+C L  +G
Sbjct  33   LVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANG  92

Query  63   ESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI  100
             +GLQ+V +LR  NPG +MD   KFAAI++  YCP  +
Sbjct  93   VTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  130


>gi|15608947|ref|NP_216326.1| hypothetical protein Rv1810 [Mycobacterium tuberculosis H37Rv]
 gi|31792999|ref|NP_855492.1| hypothetical protein Mb1840 [Mycobacterium bovis AF2122/97]
 gi|121637712|ref|YP_977935.1| hypothetical protein BCG_1844 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 39 more sequence titles
 Length=118

 Score =  110 bits (274),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 52/98 (54%), Positives = 69/98 (71%), Gaps = 0/98 (0%)

Query  3    VVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESG  62
            +V+ LLS   MIGLA P  A P+GDDA FLA+L++AGITY+ P  AI + KA+C L  +G
Sbjct  16   LVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANG  75

Query  63   ESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI  100
             +GLQ+V +LR  NPG +MD   KFAAI++  YCP  +
Sbjct  76   VTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113


>gi|289443284|ref|ZP_06433028.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289569882|ref|ZP_06450109.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289750383|ref|ZP_06509761.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289753905|ref|ZP_06513283.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289416203|gb|EFD13443.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289543636|gb|EFD47284.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289690970|gb|EFD58399.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289694492|gb|EFD61921.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=122

 Score =  110 bits (274),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 52/98 (54%), Positives = 69/98 (71%), Gaps = 0/98 (0%)

Query  3    VVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESG  62
            +V+ LLS   MIGLA P  A P+GDDA FLA+L++AGITY+ P  AI + KA+C L  +G
Sbjct  20   LVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANG  79

Query  63   ESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI  100
             +GLQ+V +LR  NPG +MD   KFAAI++  YCP  +
Sbjct  80   VTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  117


>gi|254231992|ref|ZP_04925319.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|124601051|gb|EAY60061.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=104

 Score =  107 bits (266),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 51/98 (53%), Positives = 68/98 (70%), Gaps = 0/98 (0%)

Query  3   VVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESG  62
           +V+ LLS   MIGLA P  A P+GDDA FLA+L++AGITY+ P  AI + KA+C L  +G
Sbjct  2   LVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANG  61

Query  63  ESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI  100
            +GLQ+V +LR  NPG +M    KFAAI++  YCP  +
Sbjct  62  VTGLQLVADLRDYNPGLTMHSAAKFAAIASGAYCPEHL  99


>gi|254775379|ref|ZP_05216895.1| hypothetical protein MaviaA2_12021 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=106

 Score =  106 bits (264),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 53/99 (54%), Positives = 72/99 (73%), Gaps = 0/99 (0%)

Query  2    RVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVES  61
            RV++ L      +G A PA A P GDDA FLASL+++GITYS P Q IAS KAVC L+  
Sbjct  3    RVLALLGIGAAALGYAAPARAEPQGDDAAFLASLDQSGITYSSPVQVIASAKAVCGLMGR  62

Query  62   GESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI  100
            GE+GLQVV +++ +NPG +MDG  +FAA++++ YCPH +
Sbjct  63   GETGLQVVTDIKDQNPGMTMDGAAQFAALASNAYCPHHL  101


>gi|240173096|ref|ZP_04751754.1| hypothetical protein MkanA1_27536 [Mycobacterium kansasii ATCC 
12478]
Length=110

 Score =  104 bits (259),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 50/90 (56%), Positives = 66/90 (74%), Gaps = 4/90 (4%)

Query  15   GLAVPAHAGPSG----DDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVN  70
            GLA PAHA P G    DDA FLA+L++AGITY  P  AI S +AVC  +++GE+GL+VV+
Sbjct  18   GLAAPAHADPQGPSGGDDAGFLAALQQAGITYPSPAAAIGSAQAVCGCLDNGEAGLEVVH  77

Query  71   ELRTRNPGFSMDGCCKFAAISAHVYCPHQI  100
            E++ RNPGF+M+   +FA ISA  YCPH +
Sbjct  78   EVKVRNPGFNMEAASQFAVISAKYYCPHHL  107


>gi|254823256|ref|ZP_05228257.1| hypothetical protein MintA_25224 [Mycobacterium intracellulare 
ATCC 13950]
Length=105

 Score =  104 bits (259),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 54/101 (54%), Positives = 71/101 (71%), Gaps = 0/101 (0%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE  60
            M+  + LL    +IG A PAHA P GDDA FLA+L+ +GITYS   Q I S KAVC L+ 
Sbjct  1    MKRFAALLGAVGVIGFAAPAHAEPEGDDAAFLANLDNSGITYSSSSQVITSAKAVCGLMG  60

Query  61   SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT  101
             GE+GLQVV++++ +NPG +MD   KFAA+++  YCPH IT
Sbjct  61   RGETGLQVVSDIKDQNPGMTMDAAAKFAALASSAYCPHHIT  101


>gi|118465508|ref|YP_882090.1| hypothetical protein MAV_2904 [Mycobacterium avium 104]
 gi|118166795|gb|ABK67692.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=103

 Score =  102 bits (254),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 45/80 (57%), Positives = 61/80 (77%), Gaps = 0/80 (0%)

Query  21  HAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFS  80
            A P GDDA FLASL+++GITYS   Q IAS KAVC L+  GE+GLQVV +++ +NPG +
Sbjct  19  RAEPQGDDAAFLASLDQSGITYSSSVQVIASAKAVCGLMGRGETGLQVVTDIKDQNPGMT  78

Query  81  MDGCCKFAAISAHVYCPHQI  100
           MDG  +FAA++++ YCPH +
Sbjct  79  MDGAAQFAALASNAYCPHHL  98


>gi|254823260|ref|ZP_05228261.1| hypothetical protein MintA_25244 [Mycobacterium intracellulare 
ATCC 13950]
Length=107

 Score =  100 bits (248),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 48/106 (46%), Positives = 72/106 (68%), Gaps = 4/106 (3%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPS----GDDAVFLASLERAGITYSHPDQAIASGKAVC  56
            M  +  LLS    IGLA PAHA P      DD  F+A+L +AG +++ P  A+A+G+AVC
Sbjct  1    MTRLLALLSAFATIGLAAPAHADPGPEPGADDGGFIAALRQAGFSFATPGSAVAAGRAVC  60

Query  57   ALVESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITK  102
            + +++GE GL+VV++++TRNPG  M+    FA +SA  YCP+Q++K
Sbjct  61   SCLDNGEPGLEVVHDVKTRNPGMDMEMASNFAVLSAKFYCPNQLSK  106


>gi|296164795|ref|ZP_06847355.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899849|gb|EFG79295.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=105

 Score = 97.4 bits (241),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 48/103 (47%), Positives = 66/103 (65%), Gaps = 2/103 (1%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPSG--DDAVFLASLERAGITYSHPDQAIASGKAVCAL  58
            MR++  ++ +  +IGLA PAH  P G  D+A FLASL  AGITY  PD A+   KAVC  
Sbjct  1    MRLLVAVIGVWAVIGLAAPAHGDPDGGVDEASFLASLRSAGITYKTPDAAVQFAKAVCES  60

Query  59   VESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT  101
            + +GE G Q+V+EL+ +NPG + D    F AI+A  YCP ++ 
Sbjct  61   MGNGEYGPQMVSELQAQNPGLTADHATSFLAIAAKFYCPQKLN  103


>gi|183983439|ref|YP_001851730.1| hypothetical protein MMAR_3450 [Mycobacterium marinum M]
 gi|183176765|gb|ACC41875.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=99

 Score = 93.2 bits (230),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 43/79 (55%), Positives = 52/79 (66%), Gaps = 0/79 (0%)

Query  25   SGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSMDGC  84
            +GDD  FL +L+R GITY  P QAI + +AVC  ++ GESGL VV E+  RNPGF MD  
Sbjct  21   AGDDVGFLVALQRIGITYPSPAQAIDAARAVCVCLDRGESGLAVVQEVTARNPGFDMDAA  80

Query  85   CKFAAISAHVYCPHQITKT  103
              FA ISA  YCPH +  T
Sbjct  81   AHFAVISATYYCPHHLAVT  99


>gi|254823283|ref|ZP_05228284.1| hypothetical protein MintA_25369 [Mycobacterium intracellulare 
ATCC 13950]
Length=116

 Score = 92.8 bits (229),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 45/110 (41%), Positives = 67/110 (61%), Gaps = 7/110 (6%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPSGDDA-------VFLASLERAGITYSHPDQAIASGK  53
            M  +  LL++ L I LA PAHA P  D+A        FL+ L   GI++  P QA+A+GK
Sbjct  1    MTRLLALLTVSLGITLAAPAHATPGEDEAPADDNNGSFLSDLHTVGISFKDPGQAVAAGK  60

Query  54   AVCALVESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKT  103
            +VC ++  G SGLQ++ ++R  NP  + +G  +FA ISA  YCP Q+ ++
Sbjct  61   SVCGMITRGVSGLQLLTDIRDNNPALTTNGAAQFATISAKAYCPGQLEES  110


>gi|118466879|ref|YP_882536.1| hypothetical protein MAV_3354 [Mycobacterium avium 104]
 gi|118168166|gb|ABK69063.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=117

 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 44/91 (49%), Positives = 60/91 (66%), Gaps = 7/91 (7%)

Query  17   AVPAHAGPSGDDA-------VFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVV  69
            AVPAHA P  D+A       VF+A L + GI++  P QA+++GKAVC L+  G SGLQ++
Sbjct  17   AVPAHAVPGEDEAAADDNNEVFIADLHKVGISFQDPGQAVSAGKAVCGLLARGVSGLQLL  76

Query  70   NELRTRNPGFSMDGCCKFAAISAHVYCPHQI  100
            N+LR  NP  + +G  +FA ISA  YCP Q+
Sbjct  77   NDLRDNNPALTTNGAAQFATISAKSYCPRQL  107


>gi|342861290|ref|ZP_08717938.1| hypothetical protein MCOL_20501 [Mycobacterium colombiense CECT 
3035]
 gi|342131190|gb|EGT84471.1| hypothetical protein MCOL_20501 [Mycobacterium colombiense CECT 
3035]
Length=98

 Score = 92.0 bits (227),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 38/77 (50%), Positives = 60/77 (78%), Gaps = 0/77 (0%)

Query  26   GDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSMDGCC  85
            GDD  F+A+L++AG ++S+P  A+A+G+AVC+ + +GESGL++V++++T NPG  M+   
Sbjct  21   GDDGGFVAALQQAGFSFSNPGSAVAAGRAVCSCLNNGESGLELVHDVKTHNPGMDMEMAS  80

Query  86   KFAAISAHVYCPHQITK  102
             FA ISA  YCPHQ++K
Sbjct  81   NFALISAKFYCPHQLSK  97


>gi|254823259|ref|ZP_05228260.1| hypothetical protein MintA_25239 [Mycobacterium intracellulare 
ATCC 13950]
Length=107

 Score = 91.7 bits (226),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 48/106 (46%), Positives = 69/106 (66%), Gaps = 4/106 (3%)

Query  1    MRVVSTL-LSIPLMIGLAVPAHAGPS---GDDAVFLASLERAGITYSHPDQAIASGKAVC  56
            MR+++ L + + +++G    AH+ P    GD+A FLASL  AGITYS PD A+   KAVC
Sbjct  1    MRLLAALGVGVSVILGPTPLAHSDPGTTGGDEAAFLASLRGAGITYSTPDGAVKFAKAVC  60

Query  57   ALVESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITK  102
              + +GE G Q+V+EL+++NPG + D    F AI+A  YCP Q+ K
Sbjct  61   VSMANGELGPQMVDELKSQNPGLTDDHATSFLAIAAKFYCPQQLNK  106


>gi|118618176|ref|YP_906508.1| hypothetical protein MUL_2724 [Mycobacterium ulcerans Agy99]
 gi|118570286|gb|ABL05037.1| conserved hypothetical membrane protein [Mycobacterium ulcerans 
Agy99]
Length=99

 Score = 91.3 bits (225),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 42/79 (54%), Positives = 51/79 (65%), Gaps = 0/79 (0%)

Query  25   SGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSMDGC  84
            +GDD  FL +L+R GITY  P QAI + +AVC  ++ GESGL VV E+  RNPGF MD  
Sbjct  21   AGDDVGFLVALQRIGITYPSPAQAIDAARAVCVCLDRGESGLAVVQEVTARNPGFDMDAA  80

Query  85   CKFAAISAHVYCPHQITKT  103
              FA IS   YCPH +  T
Sbjct  81   AHFAVISTTYYCPHHLAVT  99


>gi|41407252|ref|NP_960088.1| hypothetical protein MAP1154 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395604|gb|AAS03471.1| hypothetical protein MAP_1154 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=117

 Score = 90.1 bits (222),  Expect = 9e-17, Method: Compositional matrix adjust.
 Identities = 43/91 (48%), Positives = 59/91 (65%), Gaps = 7/91 (7%)

Query  17   AVPAHAGPSGDDA-------VFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVV  69
            AVPA A P  D+A       VF+A L + GI++  P QA+++GKAVC L+  G SGLQ++
Sbjct  17   AVPAQAVPGEDEAATDDNNEVFIADLHKVGISFQDPGQAVSAGKAVCGLLARGVSGLQLL  76

Query  70   NELRTRNPGFSMDGCCKFAAISAHVYCPHQI  100
            N+LR  NP  + +G  +FA ISA  YCP Q+
Sbjct  77   NDLRDNNPALTTNGAAQFATISAKSYCPRQL  107


>gi|254776404|ref|ZP_05217920.1| hypothetical protein MaviaA2_17294 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=108

 Score = 89.0 bits (219),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 41/103 (40%), Positives = 64/103 (63%), Gaps = 3/103 (2%)

Query  3    VVSTLLSIPLMIGLAVPAHAGP---SGDDAVFLASLERAGITYSHPDQAIASGKAVCALV  59
            +++ L    ++ G+A PAHA P   +G DA FLA+L +AGITY +P  AI  GK  C L+
Sbjct  1    MLALLAGFAVLAGMAAPAHADPAGTTGSDASFLAALNQAGITYQNPATAIEVGKRACELM  60

Query  60   ESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITK  102
            + G   ++V+  + + NPGF++DG  +F  I+A  YCP  + +
Sbjct  61   DQGSPQVEVIKNVSSSNPGFTVDGAAQFTMIAASAYCPQHLGQ  103


>gi|254775796|ref|ZP_05217312.1| hypothetical protein MaviaA2_14160 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=115

 Score = 85.9 bits (211),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 43/91 (48%), Positives = 59/91 (65%), Gaps = 9/91 (9%)

Query  17   AVPAHAGPSGDDA-------VFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVV  69
            AVPAHA P  D+A       VF+A L + GI++  P QA+++GKAVC L+  G SGLQ++
Sbjct  17   AVPAHAVPGEDEAAADDNNEVFIADLHKVGISFQDPGQAVSAGKAVCGLLARGVSGLQLL  76

Query  70   NELRTRNPGFSMDGCCKFAAISAHVYCPHQI  100
            N+LR  NP  + +G  +FA  SA  YCP Q+
Sbjct  77   NDLRDNNPALTTNGAAQFA--SAKSYCPRQL  105


>gi|333989793|ref|YP_004522407.1| hypothetical protein JDM601_1153 [Mycobacterium sp. JDM601]
 gi|333485761|gb|AEF35153.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=108

 Score = 85.5 bits (210),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 39/89 (44%), Positives = 55/89 (62%), Gaps = 0/89 (0%)

Query  19   PAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPG  78
            PA A P+  D  FLA+L+ AGITY+ PDQAI + K VC  +  G+   +V++ L+ RNPG
Sbjct  19   PAQADPADVDTDFLAALQAAGITYNRPDQAIVTAKMVCRFIAEGKPSPEVLDGLKERNPG  78

Query  79   FSMDGCCKFAAISAHVYCPHQITKTSVSA  107
             + +    F  I+AH YCP Q+ +  V A
Sbjct  79   LTTEHGSMFVGIAAHSYCPDQLVQNPVPA  107


>gi|254821156|ref|ZP_05226157.1| hypothetical protein MintA_14562 [Mycobacterium intracellulare 
ATCC 13950]
Length=107

 Score = 85.1 bits (209),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 38/94 (41%), Positives = 58/94 (62%), Gaps = 3/94 (3%)

Query  12   LMIGLAVPAHAGPSGD---DAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQV  68
            + IG+A PAHA P+G+   D  FL +L +AGITY  P  A+  GK  C L++ G   + V
Sbjct  7    VFIGVATPAHADPAGNSAADVSFLTALNKAGITYESPATAVGVGKRACELMDQGHPQVDV  66

Query  69   VNELRTRNPGFSMDGCCKFAAISAHVYCPHQITK  102
            ++ + + NPGF++DG  +F  I+A  YCP  + +
Sbjct  67   IHNVSSSNPGFTVDGAAQFTMIAASAYCPQHLGQ  100


>gi|296164793|ref|ZP_06847353.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899847|gb|EFG79293.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=107

 Score = 85.1 bits (209),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 46/107 (43%), Positives = 70/107 (66%), Gaps = 4/107 (3%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPSGDDAV----FLASLERAGITYSHPDQAIASGKAVC  56
            M+ +  LL  PLMIGLA PA+A P          F+++L +AG  ++ PD A+ +G+AVC
Sbjct  1    MKRLLALLGAPLMIGLAAPAYADPPPVPDGDDGGFISALHQAGFGFASPDAAVGAGRAVC  60

Query  57   ALVESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKT  103
            + + +GESGL+VV++++  NPG  M+    FA +SA  YCPHQ++K 
Sbjct  61   SCLNNGESGLEVVHDVKMHNPGMDMEMASNFALLSAKYYCPHQLSKA  107


>gi|333991945|ref|YP_004524559.1| hypothetical protein JDM601_3305 [Mycobacterium sp. JDM601]
 gi|333487913|gb|AEF37305.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=101

 Score = 84.3 bits (207),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 43/101 (43%), Positives = 65/101 (65%), Gaps = 1/101 (0%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQA-IASGKAVCALV  59
            M+ +  L  +  M+GLA PAHA PSG D  FLA+L  AG+++   DQA +++G+AVC L+
Sbjct  1    MKRLLLLAGLSAMVGLAAPAHAAPSGVDGQFLATLSGAGLSHRASDQATVSAGRAVCQLM  60

Query  60   ESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI  100
            ++G S +  V  ++  NPGF++    +FAAIS   YCP  +
Sbjct  61   DAGLSPMDTVVAVQATNPGFTIQTAGQFAAISTAHYCPEHM  101


>gi|333992834|ref|YP_004525448.1| hypothetical protein JDM601_4194 [Mycobacterium sp. JDM601]
 gi|333488802|gb|AEF38194.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=117

 Score = 84.0 bits (206),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 54/70 (78%), Gaps = 0/70 (0%)

Query  31   FLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSMDGCCKFAAI  90
            FL SL  AGITYS P QAI + +AVC LV+ GE GLQV+++L+  NPGF+ DG  +FAAI
Sbjct  45   FLESLRAAGITYSSPGQAIEAARAVCGLVDRGEPGLQVISDLKATNPGFTTDGAAQFAAI  104

Query  91   SAHVYCPHQI  100
            +A+ YCPHQ+
Sbjct  105  AANTYCPHQL  114


>gi|254818543|ref|ZP_05223544.1| hypothetical protein MintA_01396 [Mycobacterium intracellulare 
ATCC 13950]
Length=111

 Score = 84.0 bits (206),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 46/108 (43%), Positives = 62/108 (58%), Gaps = 4/108 (3%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGP----SGDDAVFLASLERAGITYSHPDQAIASGKAVC  56
            M+++  L  + + IGLAVPAHA P     G D  F+ASL  AGIT++  D+A+ +GK VC
Sbjct  1    MKLMLALSGLAVTIGLAVPAHADPVDGVDGTDEAFIASLRAAGITFADSDKAVGAGKWVC  60

Query  57   ALVESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTS  104
              V  G     VV  L ++N   S     +FAAI+A  YCP  IT T+
Sbjct  61   DTVGQGTQMPDVVKTLLSKNSALSEGKANQFAAIAASTYCPGAITSTT  108


>gi|41407618|ref|NP_960454.1| hypothetical protein MAP1520 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118464367|ref|YP_882094.1| hypothetical protein MAV_2908 [Mycobacterium avium 104]
 gi|41395971|gb|AAS03837.1| hypothetical protein MAP_1520 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118165654|gb|ABK66551.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=112

 Score = 84.0 bits (206),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 34/72 (48%), Positives = 55/72 (77%), Gaps = 0/72 (0%)

Query  31   FLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSMDGCCKFAAI  90
            F+A+L++AG ++S P  A+A+G+AVC+ + +GE GL+VV++++T NPG  M+    FA +
Sbjct  40   FVAALQQAGFSFSSPGSAVAAGRAVCSCLNNGEPGLEVVHDVKTHNPGMDMEMASNFALL  99

Query  91   SAHVYCPHQITK  102
            SA  YCPHQ++K
Sbjct  100  SAKYYCPHQLSK  111


>gi|254775384|ref|ZP_05216900.1| hypothetical protein MaviaA2_12046 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|336457569|gb|EGO36574.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=111

 Score = 83.6 bits (205),  Expect = 9e-15, Method: Compositional matrix adjust.
 Identities = 34/72 (48%), Positives = 55/72 (77%), Gaps = 0/72 (0%)

Query  31   FLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSMDGCCKFAAI  90
            F+A+L++AG ++S P  A+A+G+AVC+ + +GE GL+VV++++T NPG  M+    FA +
Sbjct  39   FVAALQQAGFSFSSPGSAVAAGRAVCSCLNNGEPGLEVVHDVKTHNPGMDMEMASNFALL  98

Query  91   SAHVYCPHQITK  102
            SA  YCPHQ++K
Sbjct  99   SAKYYCPHQLSK  110


>gi|342861294|ref|ZP_08717942.1| hypothetical protein MCOL_20521 [Mycobacterium colombiense CECT 
3035]
 gi|342131194|gb|EGT84475.1| hypothetical protein MCOL_20521 [Mycobacterium colombiense CECT 
3035]
Length=111

 Score = 83.6 bits (205),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 41/101 (41%), Positives = 59/101 (59%), Gaps = 2/101 (1%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE  60
            MR +  L       GLA+PAHA    DD  FLA+L +AGITY +PD+AI +G+ VC L  
Sbjct  1    MRFLPFLAGAVAFAGLALPAHA--DSDDDAFLAALNKAGITYQNPDRAIKAGQKVCDLAN  58

Query  61   SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT  101
            SG + L ++ ++   NP F+      F   +A VYCP +++
Sbjct  59   SGTTELDIIRDVHDLNPAFTTAKAALFVQAAASVYCPDRLS  99


>gi|254818542|ref|ZP_05223543.1| hypothetical protein MintA_01391 [Mycobacterium intracellulare 
ATCC 13950]
Length=114

 Score = 82.8 bits (203),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 45/101 (45%), Positives = 57/101 (57%), Gaps = 1/101 (0%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE  60
            MR +  L S    +GLAVPAHA    +D  FL  L  AGITY     AI  GK+VC L++
Sbjct  1    MRFLLGLCSAAAALGLAVPAHADVD-NDQDFLKDLRDAGITYQDAGNAITIGKSVCELLD  59

Query  61   SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT  101
             G+S  ++V +LR +NP F      KF  +SA  YCP  IT
Sbjct  60   DGQSDAKIVTDLRNQNPAFQGASAAKFTFLSAAHYCPKYIT  100


>gi|118465355|ref|YP_882735.1| hypothetical protein MAV_3557 [Mycobacterium avium 104]
 gi|118166642|gb|ABK67539.1| conserved hypothetical protein [Mycobacterium avium 104]
 gi|336458836|gb|EGO37793.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=114

 Score = 82.8 bits (203),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 44/101 (44%), Positives = 57/101 (57%), Gaps = 1/101 (0%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE  60
            MR+   L ++   IGLA PAHA    +D  FL  L  AGITY     AI  GK+VC L++
Sbjct  1    MRLFLGLCALAATIGLAAPAHADID-NDQDFLKDLRDAGITYQDAGNAITIGKSVCELLD  59

Query  61   SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT  101
             G+S  ++V +LR +NP F      KF  +SA  YCP  IT
Sbjct  60   DGQSDAKIVTDLRNQNPAFQGASAAKFTYLSAAHYCPKYIT  100


>gi|342861289|ref|ZP_08717937.1| hypothetical protein MCOL_20496 [Mycobacterium colombiense CECT 
3035]
 gi|342131189|gb|EGT84470.1| hypothetical protein MCOL_20496 [Mycobacterium colombiense CECT 
3035]
Length=108

 Score = 82.4 bits (202),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 42/92 (46%), Positives = 58/92 (64%), Gaps = 3/92 (3%)

Query  14   IGLAVPAHAGP---SGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVN  70
            IG+A  AH  P    GD+A FLASL  AGITY+ P+ AI   K+VC  +  GE G Q+V+
Sbjct  16   IGMAPLAHGDPVTPGGDEAGFLASLRSAGITYATPEAAITFAKSVCVSMGDGEVGPQMVD  75

Query  71   ELRTRNPGFSMDGCCKFAAISAHVYCPHQITK  102
            EL+++NP  + +    F AI+A  YCP Q+ +
Sbjct  76   ELKSQNPELTNERATSFLAIAAKYYCPQQLNR  107


>gi|254775999|ref|ZP_05217515.1| hypothetical protein MaviaA2_15205 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=114

 Score = 82.4 bits (202),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 44/101 (44%), Positives = 56/101 (56%), Gaps = 1/101 (0%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE  60
            MR    L ++   IGLA PAHA    +D  FL  L  AGITY     AI  GK+VC L++
Sbjct  1    MRFFLGLCALAATIGLAAPAHADID-NDQDFLKDLRDAGITYQDAGNAITIGKSVCELLD  59

Query  61   SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT  101
             G+S  ++V +LR +NP F      KF  +SA  YCP  IT
Sbjct  60   DGQSDAKIVTDLRNQNPAFQGASAAKFTYLSAAHYCPKYIT  100


>gi|41408883|ref|NP_961719.1| hypothetical protein MAP2785c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41397242|gb|AAS05102.1| hypothetical protein MAP_2785c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=161

 Score = 82.0 bits (201),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 44/101 (44%), Positives = 57/101 (57%), Gaps = 1/101 (0%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE  60
            MR+   L ++   IGLA PAHA    +D  FL  L  AGITY     AI  GK+VC L++
Sbjct  48   MRLFLGLCALAATIGLAAPAHADID-NDQDFLKDLRDAGITYQDAGNAITIGKSVCELLD  106

Query  61   SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT  101
             G+S  ++V +LR +NP F      KF  +SA  YCP  IT
Sbjct  107  DGQSDAKIVTDLRNQNPAFQGASAAKFTYLSAAHYCPKYIT  147


>gi|342858464|ref|ZP_08715119.1| hypothetical protein MCOL_06301 [Mycobacterium colombiense CECT 
3035]
 gi|342134168|gb|EGT87348.1| hypothetical protein MCOL_06301 [Mycobacterium colombiense CECT 
3035]
Length=114

 Score = 81.6 bits (200),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 43/101 (43%), Positives = 58/101 (58%), Gaps = 1/101 (0%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE  60
            MR +  L S+  +I LA PAHA    +D  FL  L  AG+TY     AI  GK+VC L++
Sbjct  1    MRFLLGLTSLATVIFLAAPAHADID-NDQDFLKDLRDAGLTYQDGGNAITIGKSVCDLLD  59

Query  61   SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT  101
             G+S  ++V +LR +NPGF      KF  ++A  YCP  IT
Sbjct  60   DGQSDAKIVTDLRNQNPGFQGAAAAKFTYLAAAHYCPKYIT  100


>gi|296169238|ref|ZP_06850891.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896136|gb|EFG75803.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=129

 Score = 81.3 bits (199),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 42/101 (42%), Positives = 58/101 (58%), Gaps = 1/101 (0%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPSGD-DAVFLASLERAGITYSHPDQAIASGKAVCALV  59
            MR+   L S   +IG A PAHA PSG+ DA FLA+L+R+G+ Y +   AI  GK  C L+
Sbjct  1    MRMFLVLASFAAIIGAATPAHADPSGNPDADFLAALDRSGVPYKNAAVAIRVGKKACQLM  60

Query  60   ESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI  100
            + G S   V+  + + N GF++    KF   +  VYCP  I
Sbjct  61   DQGHSEADVIQSVSSENAGFTVSDATKFTTSAVSVYCPQHI  101


>gi|336459289|gb|EGO38233.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=110

 Score = 80.1 bits (196),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 35/81 (44%), Positives = 52/81 (65%), Gaps = 0/81 (0%)

Query  22   AGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSM  81
            AG +G DA FLA+L +AGITY +P  AI  GK  C L++ G   ++V+  + + NPGF++
Sbjct  25   AGTTGSDASFLAALNQAGITYQNPATAIEVGKRACELMDQGSPQVEVIKNVSSSNPGFTV  84

Query  82   DGCCKFAAISAHVYCPHQITK  102
            DG  +F  I+A  YCP  + +
Sbjct  85   DGAAQFTMIAASAYCPQHLGQ  105


>gi|240169301|ref|ZP_04747960.1| hypothetical protein MkanA1_08306 [Mycobacterium kansasii ATCC 
12478]
Length=102

 Score = 80.1 bits (196),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 43/98 (44%), Positives = 58/98 (60%), Gaps = 4/98 (4%)

Query  7    LLSIPLMIGLAVPAHAGPSGD----DAVFLASLERAGITYSHPDQAIASGKAVCALVESG  62
            LLS    IG+A PA A    D    D  FL +L+ AGITYS+P  A+ S  A+C  +  G
Sbjct  4    LLSAFTTIGIAAPALADAGVDLGARDVGFLGALQDAGITYSNPGHAVESAHAMCRNLHHG  63

Query  63   ESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI  100
            ESGLQ V +++ +NP   +D   +FA I+A  YCP Q+
Sbjct  64   ESGLQAVQQVKIQNPPIDLDTASRFAVIAAKYYCPEQL  101


>gi|41409256|ref|NP_962092.1| hypothetical protein MAP3158c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118465687|ref|YP_883144.1| hypothetical protein MAV_3988 [Mycobacterium avium 104]
 gi|41398076|gb|AAS05706.1| hypothetical protein MAP_3158c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118166974|gb|ABK67871.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=131

 Score = 80.1 bits (196),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 35/81 (44%), Positives = 52/81 (65%), Gaps = 0/81 (0%)

Query  22   AGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSM  81
            AG +G DA FLA+L +AGITY +P  AI  GK  C L++ G   ++V+  + + NPGF++
Sbjct  46   AGTTGSDASFLAALNQAGITYQNPATAIEVGKRACELMDQGSPQVEVIKNVSSSNPGFTV  105

Query  82   DGCCKFAAISAHVYCPHQITK  102
            DG  +F  I+A  YCP  + +
Sbjct  106  DGAAQFTMIAASAYCPQHLGQ  126


>gi|118463814|ref|YP_882093.1| hypothetical protein MAV_2907 [Mycobacterium avium 104]
 gi|254775383|ref|ZP_05216899.1| hypothetical protein MaviaA2_12041 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|118165101|gb|ABK65998.1| conserved hypothetical protein [Mycobacterium avium 104]
 gi|336457570|gb|EGO36575.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=102

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 53/80 (67%), Gaps = 0/80 (0%)

Query  24   PSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSMDG  83
            P  D+A FLASL  AGI Y+ P  AI   +AVC  + +GESG Q+++EL+++NPG + D 
Sbjct  23   PGVDEAGFLASLRSAGIGYATPQGAIKFAQAVCVSMGNGESGPQLLDELKSQNPGLTNDH  82

Query  84   CCKFAAISAHVYCPHQITKT  103
               F AI+A  YCP Q+ ++
Sbjct  83   ATSFLAIAAKYYCPQQLNRS  102


>gi|333989644|ref|YP_004522258.1| hypothetical protein JDM601_1004 [Mycobacterium sp. JDM601]
 gi|333485612|gb|AEF35004.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=101

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 61/100 (61%), Gaps = 1/100 (1%)

Query  1   MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQ-AIASGKAVCALV  59
           M+    L  +  M+GLA P HA P G DA FL +L  AG+++   DQ AI++G +VC L+
Sbjct  1   MKRFLLLAGVTAMMGLAAPGHADPVGSDAAFLTALSGAGLSHRGSDQVAISAGHSVCQLM  60

Query  60  ESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQ  99
           ++G S +  V  ++T NPGF++    +FA I+A  YCP  
Sbjct  61  DAGLSPMDTVVAVQTTNPGFTLQRAAEFARIAAVNYCPEH  100


>gi|41408884|ref|NP_961720.1| hypothetical protein MAP2786c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|254776000|ref|ZP_05217516.1| hypothetical protein MaviaA2_15210 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41397243|gb|AAS05103.1| hypothetical protein MAP_2786c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336458835|gb|EGO37792.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=114

 Score = 77.8 bits (190),  Expect = 5e-13, Method: Compositional matrix adjust.
 Identities = 42/99 (43%), Positives = 60/99 (61%), Gaps = 2/99 (2%)

Query  1   MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE  60
           M++   +     +IGLAVPA A  S DDA F+ASL++AGI Y   D+A  +GK VC  ++
Sbjct  1   MKLFLIVAGFAAVIGLAVPARA-DSTDDA-FVASLDKAGIKYGDADKAAGAGKWVCTTLQ  58

Query  61  SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQ  99
            G+    VV+ L+++N   S D    FAAI+ + YCP Q
Sbjct  59  GGKQMSDVVSTLQSKNSNLSDDHANTFAAIAVNAYCPDQ  97


>gi|336457566|gb|EGO36571.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=111

 Score = 76.6 bits (187),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 39/101 (39%), Positives = 59/101 (59%), Gaps = 2/101 (1%)

Query  1    MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE  60
            MR ++ L     ++G+A+PAHA    DD  FLA+L +AGITY  P +AI +G+ VC L  
Sbjct  1    MRTLALLAGAAALVGMAIPAHA--DSDDDAFLAALNKAGITYPDPTRAIRAGQKVCDLAG  58

Query  61   SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT  101
            SG + L ++ ++   NP FS      F   +A  YCP +++
Sbjct  59   SGTTELDIIRDVHELNPAFSTAKAALFVQAAAGAYCPDRLS  99



Lambda     K      H
   0.319    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129996839040


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40