BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1804c
Length=108
Score E
Sequences producing significant alignments: (Bits) Value
gi|15841274|ref|NP_336311.1| hypothetical protein MT1854 [Mycoba... 222 2e-56
gi|289554423|ref|ZP_06443633.1| conserved hypothetical protein [... 222 2e-56
gi|15608941|ref|NP_216320.1| hypothetical protein Rv1804c [Mycob... 221 2e-56
gi|340626814|ref|YP_004745266.1| hypothetical protein MCAN_18201... 220 6e-56
gi|167967401|ref|ZP_02549678.1| hypothetical protein MtubH3_0492... 214 5e-54
gi|183982693|ref|YP_001850984.1| hypothetical protein MMAR_2686 ... 116 9e-25
gi|41407621|ref|NP_960457.1| hypothetical protein MAP1523 [Mycob... 113 7e-24
gi|167967395|ref|ZP_02549672.1| hypothetical protein MtubH3_0489... 110 7e-23
gi|15841280|ref|NP_336317.1| hypothetical protein MT1858 [Mycoba... 110 7e-23
gi|15608947|ref|NP_216326.1| hypothetical protein Rv1810 [Mycoba... 110 9e-23
gi|289443284|ref|ZP_06433028.1| conserved hypothetical protein [... 110 9e-23
gi|254231992|ref|ZP_04925319.1| conserved hypothetical protein [... 107 7e-22
gi|254775379|ref|ZP_05216895.1| hypothetical protein MaviaA2_120... 106 1e-21
gi|240173096|ref|ZP_04751754.1| hypothetical protein MkanA1_2753... 104 5e-21
gi|254823256|ref|ZP_05228257.1| hypothetical protein MintA_25224... 104 5e-21
gi|118465508|ref|YP_882090.1| hypothetical protein MAV_2904 [Myc... 102 2e-20
gi|254823260|ref|ZP_05228261.1| hypothetical protein MintA_25244... 100 1e-19
gi|296164795|ref|ZP_06847355.1| conserved hypothetical protein [... 97.4 6e-19
gi|183983439|ref|YP_001851730.1| hypothetical protein MMAR_3450 ... 93.2 1e-17
gi|254823283|ref|ZP_05228284.1| hypothetical protein MintA_25369... 92.8 2e-17
gi|118466879|ref|YP_882536.1| hypothetical protein MAV_3354 [Myc... 92.4 2e-17
gi|342861290|ref|ZP_08717938.1| hypothetical protein MCOL_20501 ... 92.0 2e-17
gi|254823259|ref|ZP_05228260.1| hypothetical protein MintA_25239... 91.7 3e-17
gi|118618176|ref|YP_906508.1| hypothetical protein MUL_2724 [Myc... 91.3 4e-17
gi|41407252|ref|NP_960088.1| hypothetical protein MAP1154 [Mycob... 90.1 9e-17
gi|254776404|ref|ZP_05217920.1| hypothetical protein MaviaA2_172... 89.0 2e-16
gi|254775796|ref|ZP_05217312.1| hypothetical protein MaviaA2_141... 85.9 2e-15
gi|333989793|ref|YP_004522407.1| hypothetical protein JDM601_115... 85.5 2e-15
gi|254821156|ref|ZP_05226157.1| hypothetical protein MintA_14562... 85.1 3e-15
gi|296164793|ref|ZP_06847353.1| conserved hypothetical protein [... 85.1 3e-15
gi|333991945|ref|YP_004524559.1| hypothetical protein JDM601_330... 84.3 5e-15
gi|333992834|ref|YP_004525448.1| hypothetical protein JDM601_419... 84.0 6e-15
gi|254818543|ref|ZP_05223544.1| hypothetical protein MintA_01396... 84.0 8e-15
gi|41407618|ref|NP_960454.1| hypothetical protein MAP1520 [Mycob... 84.0 8e-15
gi|254775384|ref|ZP_05216900.1| hypothetical protein MaviaA2_120... 83.6 9e-15
gi|342861294|ref|ZP_08717942.1| hypothetical protein MCOL_20521 ... 83.6 1e-14
gi|254818542|ref|ZP_05223543.1| hypothetical protein MintA_01391... 82.8 1e-14
gi|118465355|ref|YP_882735.1| hypothetical protein MAV_3557 [Myc... 82.8 2e-14
gi|342861289|ref|ZP_08717937.1| hypothetical protein MCOL_20496 ... 82.4 2e-14
gi|254775999|ref|ZP_05217515.1| hypothetical protein MaviaA2_152... 82.4 2e-14
gi|41408883|ref|NP_961719.1| hypothetical protein MAP2785c [Myco... 82.0 3e-14
gi|342858464|ref|ZP_08715119.1| hypothetical protein MCOL_06301 ... 81.6 3e-14
gi|296169238|ref|ZP_06850891.1| conserved hypothetical protein [... 81.3 5e-14
gi|336459289|gb|EGO38233.1| Protein of unknown function (DUF732)... 80.1 9e-14
gi|240169301|ref|ZP_04747960.1| hypothetical protein MkanA1_0830... 80.1 9e-14
gi|41409256|ref|NP_962092.1| hypothetical protein MAP3158c [Myco... 80.1 1e-13
gi|118463814|ref|YP_882093.1| hypothetical protein MAV_2907 [Myc... 79.3 2e-13
gi|333989644|ref|YP_004522258.1| hypothetical protein JDM601_100... 79.0 2e-13
gi|41408884|ref|NP_961720.1| hypothetical protein MAP2786c [Myco... 77.8 5e-13
gi|336457566|gb|EGO36571.1| Protein of unknown function (DUF732)... 76.6 1e-12
>gi|15841274|ref|NP_336311.1| hypothetical protein MT1854 [Mycobacterium tuberculosis CDC1551]
gi|13881502|gb|AAK46125.1| hypothetical protein MT1854 [Mycobacterium tuberculosis CDC1551]
Length=122
Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/108 (100%), Positives = 108/108 (100%), Gaps = 0/108 (0%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE 60
MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE
Sbjct 15 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE 74
Query 61 SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK 108
SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK
Sbjct 75 SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK 122
>gi|289554423|ref|ZP_06443633.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|289439055|gb|EFD21548.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
Length=110
Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/108 (100%), Positives = 108/108 (100%), Gaps = 0/108 (0%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE 60
MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE
Sbjct 3 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE 62
Query 61 SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK 108
SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK
Sbjct 63 SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK 110
>gi|15608941|ref|NP_216320.1| hypothetical protein Rv1804c [Mycobacterium tuberculosis H37Rv]
gi|31792993|ref|NP_855486.1| hypothetical protein Mb1833c [Mycobacterium bovis AF2122/97]
gi|121637706|ref|YP_977929.1| hypothetical protein BCG_1837c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
59 more sequence titles
Length=108
Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/108 (100%), Positives = 108/108 (100%), Gaps = 0/108 (0%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE 60
MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE
Sbjct 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE 60
Query 61 SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK 108
SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK
Sbjct 61 SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK 108
>gi|340626814|ref|YP_004745266.1| hypothetical protein MCAN_18201 [Mycobacterium canettii CIPT
140010059]
gi|340005004|emb|CCC44152.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=108
Score = 220 bits (560), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 107/108 (99%), Positives = 107/108 (99%), Gaps = 0/108 (0%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE 60
MR VSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE
Sbjct 1 MRAVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE 60
Query 61 SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK 108
SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK
Sbjct 61 SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK 108
>gi|167967401|ref|ZP_02549678.1| hypothetical protein MtubH3_04927 [Mycobacterium tuberculosis
H37Ra]
gi|254550813|ref|ZP_05141260.1| hypothetical protein Mtube_10201 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|298525300|ref|ZP_07012709.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
12 more sequence titles
Length=105
Score = 214 bits (544), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 104/105 (99%), Positives = 105/105 (100%), Gaps = 0/105 (0%)
Query 4 VSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGE 63
+STLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGE
Sbjct 1 MSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGE 60
Query 64 SGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK 108
SGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK
Sbjct 61 SGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTSVSAK 105
>gi|183982693|ref|YP_001850984.1| hypothetical protein MMAR_2686 [Mycobacterium marinum M]
gi|183176019|gb|ACC41129.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=106
Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/104 (52%), Positives = 75/104 (73%), Gaps = 3/104 (2%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPS---GDDAVFLASLERAGITYSHPDQAIASGKAVCA 57
M+ + LL + MI LA PAHA P GDD FLA+L+ AGITYS+PDQAI S KAVC
Sbjct 1 MKTLFALLGLSAMIWLAAPAHAHPDEGGGDDVGFLAALQNAGITYSNPDQAIGSAKAVCW 60
Query 58 LVESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT 101
++ GESGL++V++++T NPGF+M+ +FA ++A YCPH ++
Sbjct 61 CLDGGESGLELVHDVKTHNPGFNMEAASQFAVLAATYYCPHHLS 104
>gi|41407621|ref|NP_960457.1| hypothetical protein MAP1523 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395974|gb|AAS03840.1| hypothetical protein MAP_1523 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336457573|gb|EGO36578.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=106
Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/101 (54%), Positives = 72/101 (72%), Gaps = 1/101 (0%)
Query 1 MRVVSTLLSI-PLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALV 59
M+ V LL I +G PA A P GDDA FLASL+++GITYS P Q IAS KAVC L+
Sbjct 1 MKRVLALLGIGAAALGYTAPARAEPQGDDAAFLASLDQSGITYSSPVQVIASAKAVCGLM 60
Query 60 ESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI 100
GE+GLQVV +++ +NPG +MDG +FAA++++ YCPH +
Sbjct 61 GRGETGLQVVTDIKDQNPGMTMDGAAQFAALASNAYCPHHL 101
>gi|167967395|ref|ZP_02549672.1| hypothetical protein MtubH3_04897 [Mycobacterium tuberculosis
H37Ra]
gi|254550818|ref|ZP_05141265.1| hypothetical protein Mtube_10226 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|308231946|ref|ZP_07414364.2| hypothetical protein TMAG_01985 [Mycobacterium tuberculosis SUMu001]
26 more sequence titles
Length=104
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 52/98 (54%), Positives = 69/98 (71%), Gaps = 0/98 (0%)
Query 3 VVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESG 62
+V+ LLS MIGLA P A P+GDDA FLA+L++AGITY+ P AI + KA+C L +G
Sbjct 2 LVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANG 61
Query 63 ESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI 100
+GLQ+V +LR NPG +MD KFAAI++ YCP +
Sbjct 62 VTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL 99
>gi|15841280|ref|NP_336317.1| hypothetical protein MT1858 [Mycobacterium tuberculosis CDC1551]
gi|13881509|gb|AAK46131.1| hypothetical protein MT1858 [Mycobacterium tuberculosis CDC1551]
Length=135
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 52/98 (54%), Positives = 69/98 (71%), Gaps = 0/98 (0%)
Query 3 VVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESG 62
+V+ LLS MIGLA P A P+GDDA FLA+L++AGITY+ P AI + KA+C L +G
Sbjct 33 LVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANG 92
Query 63 ESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI 100
+GLQ+V +LR NPG +MD KFAAI++ YCP +
Sbjct 93 VTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL 130
>gi|15608947|ref|NP_216326.1| hypothetical protein Rv1810 [Mycobacterium tuberculosis H37Rv]
gi|31792999|ref|NP_855492.1| hypothetical protein Mb1840 [Mycobacterium bovis AF2122/97]
gi|121637712|ref|YP_977935.1| hypothetical protein BCG_1844 [Mycobacterium bovis BCG str. Pasteur
1173P2]
39 more sequence titles
Length=118
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/98 (54%), Positives = 69/98 (71%), Gaps = 0/98 (0%)
Query 3 VVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESG 62
+V+ LLS MIGLA P A P+GDDA FLA+L++AGITY+ P AI + KA+C L +G
Sbjct 16 LVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANG 75
Query 63 ESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI 100
+GLQ+V +LR NPG +MD KFAAI++ YCP +
Sbjct 76 VTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL 113
>gi|289443284|ref|ZP_06433028.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289569882|ref|ZP_06450109.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289750383|ref|ZP_06509761.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289753905|ref|ZP_06513283.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289416203|gb|EFD13443.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289543636|gb|EFD47284.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289690970|gb|EFD58399.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289694492|gb|EFD61921.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=122
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/98 (54%), Positives = 69/98 (71%), Gaps = 0/98 (0%)
Query 3 VVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESG 62
+V+ LLS MIGLA P A P+GDDA FLA+L++AGITY+ P AI + KA+C L +G
Sbjct 20 LVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANG 79
Query 63 ESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI 100
+GLQ+V +LR NPG +MD KFAAI++ YCP +
Sbjct 80 VTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL 117
>gi|254231992|ref|ZP_04925319.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|124601051|gb|EAY60061.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=104
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/98 (53%), Positives = 68/98 (70%), Gaps = 0/98 (0%)
Query 3 VVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESG 62
+V+ LLS MIGLA P A P+GDDA FLA+L++AGITY+ P AI + KA+C L +G
Sbjct 2 LVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANG 61
Query 63 ESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI 100
+GLQ+V +LR NPG +M KFAAI++ YCP +
Sbjct 62 VTGLQLVADLRDYNPGLTMHSAAKFAAIASGAYCPEHL 99
>gi|254775379|ref|ZP_05216895.1| hypothetical protein MaviaA2_12021 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=106
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/99 (54%), Positives = 72/99 (73%), Gaps = 0/99 (0%)
Query 2 RVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVES 61
RV++ L +G A PA A P GDDA FLASL+++GITYS P Q IAS KAVC L+
Sbjct 3 RVLALLGIGAAALGYAAPARAEPQGDDAAFLASLDQSGITYSSPVQVIASAKAVCGLMGR 62
Query 62 GESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI 100
GE+GLQVV +++ +NPG +MDG +FAA++++ YCPH +
Sbjct 63 GETGLQVVTDIKDQNPGMTMDGAAQFAALASNAYCPHHL 101
>gi|240173096|ref|ZP_04751754.1| hypothetical protein MkanA1_27536 [Mycobacterium kansasii ATCC
12478]
Length=110
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/90 (56%), Positives = 66/90 (74%), Gaps = 4/90 (4%)
Query 15 GLAVPAHAGPSG----DDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVN 70
GLA PAHA P G DDA FLA+L++AGITY P AI S +AVC +++GE+GL+VV+
Sbjct 18 GLAAPAHADPQGPSGGDDAGFLAALQQAGITYPSPAAAIGSAQAVCGCLDNGEAGLEVVH 77
Query 71 ELRTRNPGFSMDGCCKFAAISAHVYCPHQI 100
E++ RNPGF+M+ +FA ISA YCPH +
Sbjct 78 EVKVRNPGFNMEAASQFAVISAKYYCPHHL 107
>gi|254823256|ref|ZP_05228257.1| hypothetical protein MintA_25224 [Mycobacterium intracellulare
ATCC 13950]
Length=105
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/101 (54%), Positives = 71/101 (71%), Gaps = 0/101 (0%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE 60
M+ + LL +IG A PAHA P GDDA FLA+L+ +GITYS Q I S KAVC L+
Sbjct 1 MKRFAALLGAVGVIGFAAPAHAEPEGDDAAFLANLDNSGITYSSSSQVITSAKAVCGLMG 60
Query 61 SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT 101
GE+GLQVV++++ +NPG +MD KFAA+++ YCPH IT
Sbjct 61 RGETGLQVVSDIKDQNPGMTMDAAAKFAALASSAYCPHHIT 101
>gi|118465508|ref|YP_882090.1| hypothetical protein MAV_2904 [Mycobacterium avium 104]
gi|118166795|gb|ABK67692.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=103
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/80 (57%), Positives = 61/80 (77%), Gaps = 0/80 (0%)
Query 21 HAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFS 80
A P GDDA FLASL+++GITYS Q IAS KAVC L+ GE+GLQVV +++ +NPG +
Sbjct 19 RAEPQGDDAAFLASLDQSGITYSSSVQVIASAKAVCGLMGRGETGLQVVTDIKDQNPGMT 78
Query 81 MDGCCKFAAISAHVYCPHQI 100
MDG +FAA++++ YCPH +
Sbjct 79 MDGAAQFAALASNAYCPHHL 98
>gi|254823260|ref|ZP_05228261.1| hypothetical protein MintA_25244 [Mycobacterium intracellulare
ATCC 13950]
Length=107
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/106 (46%), Positives = 72/106 (68%), Gaps = 4/106 (3%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPS----GDDAVFLASLERAGITYSHPDQAIASGKAVC 56
M + LLS IGLA PAHA P DD F+A+L +AG +++ P A+A+G+AVC
Sbjct 1 MTRLLALLSAFATIGLAAPAHADPGPEPGADDGGFIAALRQAGFSFATPGSAVAAGRAVC 60
Query 57 ALVESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITK 102
+ +++GE GL+VV++++TRNPG M+ FA +SA YCP+Q++K
Sbjct 61 SCLDNGEPGLEVVHDVKTRNPGMDMEMASNFAVLSAKFYCPNQLSK 106
>gi|296164795|ref|ZP_06847355.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899849|gb|EFG79295.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=105
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/103 (47%), Positives = 66/103 (65%), Gaps = 2/103 (1%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSG--DDAVFLASLERAGITYSHPDQAIASGKAVCAL 58
MR++ ++ + +IGLA PAH P G D+A FLASL AGITY PD A+ KAVC
Sbjct 1 MRLLVAVIGVWAVIGLAAPAHGDPDGGVDEASFLASLRSAGITYKTPDAAVQFAKAVCES 60
Query 59 VESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT 101
+ +GE G Q+V+EL+ +NPG + D F AI+A YCP ++
Sbjct 61 MGNGEYGPQMVSELQAQNPGLTADHATSFLAIAAKFYCPQKLN 103
>gi|183983439|ref|YP_001851730.1| hypothetical protein MMAR_3450 [Mycobacterium marinum M]
gi|183176765|gb|ACC41875.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=99
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/79 (55%), Positives = 52/79 (66%), Gaps = 0/79 (0%)
Query 25 SGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSMDGC 84
+GDD FL +L+R GITY P QAI + +AVC ++ GESGL VV E+ RNPGF MD
Sbjct 21 AGDDVGFLVALQRIGITYPSPAQAIDAARAVCVCLDRGESGLAVVQEVTARNPGFDMDAA 80
Query 85 CKFAAISAHVYCPHQITKT 103
FA ISA YCPH + T
Sbjct 81 AHFAVISATYYCPHHLAVT 99
>gi|254823283|ref|ZP_05228284.1| hypothetical protein MintA_25369 [Mycobacterium intracellulare
ATCC 13950]
Length=116
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/110 (41%), Positives = 67/110 (61%), Gaps = 7/110 (6%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDA-------VFLASLERAGITYSHPDQAIASGK 53
M + LL++ L I LA PAHA P D+A FL+ L GI++ P QA+A+GK
Sbjct 1 MTRLLALLTVSLGITLAAPAHATPGEDEAPADDNNGSFLSDLHTVGISFKDPGQAVAAGK 60
Query 54 AVCALVESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKT 103
+VC ++ G SGLQ++ ++R NP + +G +FA ISA YCP Q+ ++
Sbjct 61 SVCGMITRGVSGLQLLTDIRDNNPALTTNGAAQFATISAKAYCPGQLEES 110
>gi|118466879|ref|YP_882536.1| hypothetical protein MAV_3354 [Mycobacterium avium 104]
gi|118168166|gb|ABK69063.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=117
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/91 (49%), Positives = 60/91 (66%), Gaps = 7/91 (7%)
Query 17 AVPAHAGPSGDDA-------VFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVV 69
AVPAHA P D+A VF+A L + GI++ P QA+++GKAVC L+ G SGLQ++
Sbjct 17 AVPAHAVPGEDEAAADDNNEVFIADLHKVGISFQDPGQAVSAGKAVCGLLARGVSGLQLL 76
Query 70 NELRTRNPGFSMDGCCKFAAISAHVYCPHQI 100
N+LR NP + +G +FA ISA YCP Q+
Sbjct 77 NDLRDNNPALTTNGAAQFATISAKSYCPRQL 107
>gi|342861290|ref|ZP_08717938.1| hypothetical protein MCOL_20501 [Mycobacterium colombiense CECT
3035]
gi|342131190|gb|EGT84471.1| hypothetical protein MCOL_20501 [Mycobacterium colombiense CECT
3035]
Length=98
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/77 (50%), Positives = 60/77 (78%), Gaps = 0/77 (0%)
Query 26 GDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSMDGCC 85
GDD F+A+L++AG ++S+P A+A+G+AVC+ + +GESGL++V++++T NPG M+
Sbjct 21 GDDGGFVAALQQAGFSFSNPGSAVAAGRAVCSCLNNGESGLELVHDVKTHNPGMDMEMAS 80
Query 86 KFAAISAHVYCPHQITK 102
FA ISA YCPHQ++K
Sbjct 81 NFALISAKFYCPHQLSK 97
>gi|254823259|ref|ZP_05228260.1| hypothetical protein MintA_25239 [Mycobacterium intracellulare
ATCC 13950]
Length=107
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/106 (46%), Positives = 69/106 (66%), Gaps = 4/106 (3%)
Query 1 MRVVSTL-LSIPLMIGLAVPAHAGPS---GDDAVFLASLERAGITYSHPDQAIASGKAVC 56
MR+++ L + + +++G AH+ P GD+A FLASL AGITYS PD A+ KAVC
Sbjct 1 MRLLAALGVGVSVILGPTPLAHSDPGTTGGDEAAFLASLRGAGITYSTPDGAVKFAKAVC 60
Query 57 ALVESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITK 102
+ +GE G Q+V+EL+++NPG + D F AI+A YCP Q+ K
Sbjct 61 VSMANGELGPQMVDELKSQNPGLTDDHATSFLAIAAKFYCPQQLNK 106
>gi|118618176|ref|YP_906508.1| hypothetical protein MUL_2724 [Mycobacterium ulcerans Agy99]
gi|118570286|gb|ABL05037.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=99
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/79 (54%), Positives = 51/79 (65%), Gaps = 0/79 (0%)
Query 25 SGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSMDGC 84
+GDD FL +L+R GITY P QAI + +AVC ++ GESGL VV E+ RNPGF MD
Sbjct 21 AGDDVGFLVALQRIGITYPSPAQAIDAARAVCVCLDRGESGLAVVQEVTARNPGFDMDAA 80
Query 85 CKFAAISAHVYCPHQITKT 103
FA IS YCPH + T
Sbjct 81 AHFAVISTTYYCPHHLAVT 99
>gi|41407252|ref|NP_960088.1| hypothetical protein MAP1154 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395604|gb|AAS03471.1| hypothetical protein MAP_1154 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=117
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/91 (48%), Positives = 59/91 (65%), Gaps = 7/91 (7%)
Query 17 AVPAHAGPSGDDA-------VFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVV 69
AVPA A P D+A VF+A L + GI++ P QA+++GKAVC L+ G SGLQ++
Sbjct 17 AVPAQAVPGEDEAATDDNNEVFIADLHKVGISFQDPGQAVSAGKAVCGLLARGVSGLQLL 76
Query 70 NELRTRNPGFSMDGCCKFAAISAHVYCPHQI 100
N+LR NP + +G +FA ISA YCP Q+
Sbjct 77 NDLRDNNPALTTNGAAQFATISAKSYCPRQL 107
>gi|254776404|ref|ZP_05217920.1| hypothetical protein MaviaA2_17294 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=108
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/103 (40%), Positives = 64/103 (63%), Gaps = 3/103 (2%)
Query 3 VVSTLLSIPLMIGLAVPAHAGP---SGDDAVFLASLERAGITYSHPDQAIASGKAVCALV 59
+++ L ++ G+A PAHA P +G DA FLA+L +AGITY +P AI GK C L+
Sbjct 1 MLALLAGFAVLAGMAAPAHADPAGTTGSDASFLAALNQAGITYQNPATAIEVGKRACELM 60
Query 60 ESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITK 102
+ G ++V+ + + NPGF++DG +F I+A YCP + +
Sbjct 61 DQGSPQVEVIKNVSSSNPGFTVDGAAQFTMIAASAYCPQHLGQ 103
>gi|254775796|ref|ZP_05217312.1| hypothetical protein MaviaA2_14160 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=115
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/91 (48%), Positives = 59/91 (65%), Gaps = 9/91 (9%)
Query 17 AVPAHAGPSGDDA-------VFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVV 69
AVPAHA P D+A VF+A L + GI++ P QA+++GKAVC L+ G SGLQ++
Sbjct 17 AVPAHAVPGEDEAAADDNNEVFIADLHKVGISFQDPGQAVSAGKAVCGLLARGVSGLQLL 76
Query 70 NELRTRNPGFSMDGCCKFAAISAHVYCPHQI 100
N+LR NP + +G +FA SA YCP Q+
Sbjct 77 NDLRDNNPALTTNGAAQFA--SAKSYCPRQL 105
>gi|333989793|ref|YP_004522407.1| hypothetical protein JDM601_1153 [Mycobacterium sp. JDM601]
gi|333485761|gb|AEF35153.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=108
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/89 (44%), Positives = 55/89 (62%), Gaps = 0/89 (0%)
Query 19 PAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPG 78
PA A P+ D FLA+L+ AGITY+ PDQAI + K VC + G+ +V++ L+ RNPG
Sbjct 19 PAQADPADVDTDFLAALQAAGITYNRPDQAIVTAKMVCRFIAEGKPSPEVLDGLKERNPG 78
Query 79 FSMDGCCKFAAISAHVYCPHQITKTSVSA 107
+ + F I+AH YCP Q+ + V A
Sbjct 79 LTTEHGSMFVGIAAHSYCPDQLVQNPVPA 107
>gi|254821156|ref|ZP_05226157.1| hypothetical protein MintA_14562 [Mycobacterium intracellulare
ATCC 13950]
Length=107
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/94 (41%), Positives = 58/94 (62%), Gaps = 3/94 (3%)
Query 12 LMIGLAVPAHAGPSGD---DAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQV 68
+ IG+A PAHA P+G+ D FL +L +AGITY P A+ GK C L++ G + V
Sbjct 7 VFIGVATPAHADPAGNSAADVSFLTALNKAGITYESPATAVGVGKRACELMDQGHPQVDV 66
Query 69 VNELRTRNPGFSMDGCCKFAAISAHVYCPHQITK 102
++ + + NPGF++DG +F I+A YCP + +
Sbjct 67 IHNVSSSNPGFTVDGAAQFTMIAASAYCPQHLGQ 100
>gi|296164793|ref|ZP_06847353.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899847|gb|EFG79293.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=107
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/107 (43%), Positives = 70/107 (66%), Gaps = 4/107 (3%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAV----FLASLERAGITYSHPDQAIASGKAVC 56
M+ + LL PLMIGLA PA+A P F+++L +AG ++ PD A+ +G+AVC
Sbjct 1 MKRLLALLGAPLMIGLAAPAYADPPPVPDGDDGGFISALHQAGFGFASPDAAVGAGRAVC 60
Query 57 ALVESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKT 103
+ + +GESGL+VV++++ NPG M+ FA +SA YCPHQ++K
Sbjct 61 SCLNNGESGLEVVHDVKMHNPGMDMEMASNFALLSAKYYCPHQLSKA 107
>gi|333991945|ref|YP_004524559.1| hypothetical protein JDM601_3305 [Mycobacterium sp. JDM601]
gi|333487913|gb|AEF37305.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=101
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/101 (43%), Positives = 65/101 (65%), Gaps = 1/101 (0%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQA-IASGKAVCALV 59
M+ + L + M+GLA PAHA PSG D FLA+L AG+++ DQA +++G+AVC L+
Sbjct 1 MKRLLLLAGLSAMVGLAAPAHAAPSGVDGQFLATLSGAGLSHRASDQATVSAGRAVCQLM 60
Query 60 ESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI 100
++G S + V ++ NPGF++ +FAAIS YCP +
Sbjct 61 DAGLSPMDTVVAVQATNPGFTIQTAGQFAAISTAHYCPEHM 101
>gi|333992834|ref|YP_004525448.1| hypothetical protein JDM601_4194 [Mycobacterium sp. JDM601]
gi|333488802|gb|AEF38194.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=117
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 54/70 (78%), Gaps = 0/70 (0%)
Query 31 FLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSMDGCCKFAAI 90
FL SL AGITYS P QAI + +AVC LV+ GE GLQV+++L+ NPGF+ DG +FAAI
Sbjct 45 FLESLRAAGITYSSPGQAIEAARAVCGLVDRGEPGLQVISDLKATNPGFTTDGAAQFAAI 104
Query 91 SAHVYCPHQI 100
+A+ YCPHQ+
Sbjct 105 AANTYCPHQL 114
>gi|254818543|ref|ZP_05223544.1| hypothetical protein MintA_01396 [Mycobacterium intracellulare
ATCC 13950]
Length=111
Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/108 (43%), Positives = 62/108 (58%), Gaps = 4/108 (3%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGP----SGDDAVFLASLERAGITYSHPDQAIASGKAVC 56
M+++ L + + IGLAVPAHA P G D F+ASL AGIT++ D+A+ +GK VC
Sbjct 1 MKLMLALSGLAVTIGLAVPAHADPVDGVDGTDEAFIASLRAAGITFADSDKAVGAGKWVC 60
Query 57 ALVESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQITKTS 104
V G VV L ++N S +FAAI+A YCP IT T+
Sbjct 61 DTVGQGTQMPDVVKTLLSKNSALSEGKANQFAAIAASTYCPGAITSTT 108
>gi|41407618|ref|NP_960454.1| hypothetical protein MAP1520 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118464367|ref|YP_882094.1| hypothetical protein MAV_2908 [Mycobacterium avium 104]
gi|41395971|gb|AAS03837.1| hypothetical protein MAP_1520 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118165654|gb|ABK66551.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=112
Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/72 (48%), Positives = 55/72 (77%), Gaps = 0/72 (0%)
Query 31 FLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSMDGCCKFAAI 90
F+A+L++AG ++S P A+A+G+AVC+ + +GE GL+VV++++T NPG M+ FA +
Sbjct 40 FVAALQQAGFSFSSPGSAVAAGRAVCSCLNNGEPGLEVVHDVKTHNPGMDMEMASNFALL 99
Query 91 SAHVYCPHQITK 102
SA YCPHQ++K
Sbjct 100 SAKYYCPHQLSK 111
>gi|254775384|ref|ZP_05216900.1| hypothetical protein MaviaA2_12046 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|336457569|gb|EGO36574.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=111
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 34/72 (48%), Positives = 55/72 (77%), Gaps = 0/72 (0%)
Query 31 FLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSMDGCCKFAAI 90
F+A+L++AG ++S P A+A+G+AVC+ + +GE GL+VV++++T NPG M+ FA +
Sbjct 39 FVAALQQAGFSFSSPGSAVAAGRAVCSCLNNGEPGLEVVHDVKTHNPGMDMEMASNFALL 98
Query 91 SAHVYCPHQITK 102
SA YCPHQ++K
Sbjct 99 SAKYYCPHQLSK 110
>gi|342861294|ref|ZP_08717942.1| hypothetical protein MCOL_20521 [Mycobacterium colombiense CECT
3035]
gi|342131194|gb|EGT84475.1| hypothetical protein MCOL_20521 [Mycobacterium colombiense CECT
3035]
Length=111
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/101 (41%), Positives = 59/101 (59%), Gaps = 2/101 (1%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE 60
MR + L GLA+PAHA DD FLA+L +AGITY +PD+AI +G+ VC L
Sbjct 1 MRFLPFLAGAVAFAGLALPAHA--DSDDDAFLAALNKAGITYQNPDRAIKAGQKVCDLAN 58
Query 61 SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT 101
SG + L ++ ++ NP F+ F +A VYCP +++
Sbjct 59 SGTTELDIIRDVHDLNPAFTTAKAALFVQAAASVYCPDRLS 99
>gi|254818542|ref|ZP_05223543.1| hypothetical protein MintA_01391 [Mycobacterium intracellulare
ATCC 13950]
Length=114
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/101 (45%), Positives = 57/101 (57%), Gaps = 1/101 (0%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE 60
MR + L S +GLAVPAHA +D FL L AGITY AI GK+VC L++
Sbjct 1 MRFLLGLCSAAAALGLAVPAHADVD-NDQDFLKDLRDAGITYQDAGNAITIGKSVCELLD 59
Query 61 SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT 101
G+S ++V +LR +NP F KF +SA YCP IT
Sbjct 60 DGQSDAKIVTDLRNQNPAFQGASAAKFTFLSAAHYCPKYIT 100
>gi|118465355|ref|YP_882735.1| hypothetical protein MAV_3557 [Mycobacterium avium 104]
gi|118166642|gb|ABK67539.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336458836|gb|EGO37793.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=114
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/101 (44%), Positives = 57/101 (57%), Gaps = 1/101 (0%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE 60
MR+ L ++ IGLA PAHA +D FL L AGITY AI GK+VC L++
Sbjct 1 MRLFLGLCALAATIGLAAPAHADID-NDQDFLKDLRDAGITYQDAGNAITIGKSVCELLD 59
Query 61 SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT 101
G+S ++V +LR +NP F KF +SA YCP IT
Sbjct 60 DGQSDAKIVTDLRNQNPAFQGASAAKFTYLSAAHYCPKYIT 100
>gi|342861289|ref|ZP_08717937.1| hypothetical protein MCOL_20496 [Mycobacterium colombiense CECT
3035]
gi|342131189|gb|EGT84470.1| hypothetical protein MCOL_20496 [Mycobacterium colombiense CECT
3035]
Length=108
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/92 (46%), Positives = 58/92 (64%), Gaps = 3/92 (3%)
Query 14 IGLAVPAHAGP---SGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVN 70
IG+A AH P GD+A FLASL AGITY+ P+ AI K+VC + GE G Q+V+
Sbjct 16 IGMAPLAHGDPVTPGGDEAGFLASLRSAGITYATPEAAITFAKSVCVSMGDGEVGPQMVD 75
Query 71 ELRTRNPGFSMDGCCKFAAISAHVYCPHQITK 102
EL+++NP + + F AI+A YCP Q+ +
Sbjct 76 ELKSQNPELTNERATSFLAIAAKYYCPQQLNR 107
>gi|254775999|ref|ZP_05217515.1| hypothetical protein MaviaA2_15205 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=114
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/101 (44%), Positives = 56/101 (56%), Gaps = 1/101 (0%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE 60
MR L ++ IGLA PAHA +D FL L AGITY AI GK+VC L++
Sbjct 1 MRFFLGLCALAATIGLAAPAHADID-NDQDFLKDLRDAGITYQDAGNAITIGKSVCELLD 59
Query 61 SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT 101
G+S ++V +LR +NP F KF +SA YCP IT
Sbjct 60 DGQSDAKIVTDLRNQNPAFQGASAAKFTYLSAAHYCPKYIT 100
>gi|41408883|ref|NP_961719.1| hypothetical protein MAP2785c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41397242|gb|AAS05102.1| hypothetical protein MAP_2785c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=161
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/101 (44%), Positives = 57/101 (57%), Gaps = 1/101 (0%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE 60
MR+ L ++ IGLA PAHA +D FL L AGITY AI GK+VC L++
Sbjct 48 MRLFLGLCALAATIGLAAPAHADID-NDQDFLKDLRDAGITYQDAGNAITIGKSVCELLD 106
Query 61 SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT 101
G+S ++V +LR +NP F KF +SA YCP IT
Sbjct 107 DGQSDAKIVTDLRNQNPAFQGASAAKFTYLSAAHYCPKYIT 147
>gi|342858464|ref|ZP_08715119.1| hypothetical protein MCOL_06301 [Mycobacterium colombiense CECT
3035]
gi|342134168|gb|EGT87348.1| hypothetical protein MCOL_06301 [Mycobacterium colombiense CECT
3035]
Length=114
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/101 (43%), Positives = 58/101 (58%), Gaps = 1/101 (0%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE 60
MR + L S+ +I LA PAHA +D FL L AG+TY AI GK+VC L++
Sbjct 1 MRFLLGLTSLATVIFLAAPAHADID-NDQDFLKDLRDAGLTYQDGGNAITIGKSVCDLLD 59
Query 61 SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT 101
G+S ++V +LR +NPGF KF ++A YCP IT
Sbjct 60 DGQSDAKIVTDLRNQNPGFQGAAAAKFTYLAAAHYCPKYIT 100
>gi|296169238|ref|ZP_06850891.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896136|gb|EFG75803.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=129
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/101 (42%), Positives = 58/101 (58%), Gaps = 1/101 (0%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGD-DAVFLASLERAGITYSHPDQAIASGKAVCALV 59
MR+ L S +IG A PAHA PSG+ DA FLA+L+R+G+ Y + AI GK C L+
Sbjct 1 MRMFLVLASFAAIIGAATPAHADPSGNPDADFLAALDRSGVPYKNAAVAIRVGKKACQLM 60
Query 60 ESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI 100
+ G S V+ + + N GF++ KF + VYCP I
Sbjct 61 DQGHSEADVIQSVSSENAGFTVSDATKFTTSAVSVYCPQHI 101
>gi|336459289|gb|EGO38233.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=110
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/81 (44%), Positives = 52/81 (65%), Gaps = 0/81 (0%)
Query 22 AGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSM 81
AG +G DA FLA+L +AGITY +P AI GK C L++ G ++V+ + + NPGF++
Sbjct 25 AGTTGSDASFLAALNQAGITYQNPATAIEVGKRACELMDQGSPQVEVIKNVSSSNPGFTV 84
Query 82 DGCCKFAAISAHVYCPHQITK 102
DG +F I+A YCP + +
Sbjct 85 DGAAQFTMIAASAYCPQHLGQ 105
>gi|240169301|ref|ZP_04747960.1| hypothetical protein MkanA1_08306 [Mycobacterium kansasii ATCC
12478]
Length=102
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/98 (44%), Positives = 58/98 (60%), Gaps = 4/98 (4%)
Query 7 LLSIPLMIGLAVPAHAGPSGD----DAVFLASLERAGITYSHPDQAIASGKAVCALVESG 62
LLS IG+A PA A D D FL +L+ AGITYS+P A+ S A+C + G
Sbjct 4 LLSAFTTIGIAAPALADAGVDLGARDVGFLGALQDAGITYSNPGHAVESAHAMCRNLHHG 63
Query 63 ESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI 100
ESGLQ V +++ +NP +D +FA I+A YCP Q+
Sbjct 64 ESGLQAVQQVKIQNPPIDLDTASRFAVIAAKYYCPEQL 101
>gi|41409256|ref|NP_962092.1| hypothetical protein MAP3158c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118465687|ref|YP_883144.1| hypothetical protein MAV_3988 [Mycobacterium avium 104]
gi|41398076|gb|AAS05706.1| hypothetical protein MAP_3158c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118166974|gb|ABK67871.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=131
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/81 (44%), Positives = 52/81 (65%), Gaps = 0/81 (0%)
Query 22 AGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSM 81
AG +G DA FLA+L +AGITY +P AI GK C L++ G ++V+ + + NPGF++
Sbjct 46 AGTTGSDASFLAALNQAGITYQNPATAIEVGKRACELMDQGSPQVEVIKNVSSSNPGFTV 105
Query 82 DGCCKFAAISAHVYCPHQITK 102
DG +F I+A YCP + +
Sbjct 106 DGAAQFTMIAASAYCPQHLGQ 126
>gi|118463814|ref|YP_882093.1| hypothetical protein MAV_2907 [Mycobacterium avium 104]
gi|254775383|ref|ZP_05216899.1| hypothetical protein MaviaA2_12041 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118165101|gb|ABK65998.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336457570|gb|EGO36575.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=102
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/80 (47%), Positives = 53/80 (67%), Gaps = 0/80 (0%)
Query 24 PSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGLQVVNELRTRNPGFSMDG 83
P D+A FLASL AGI Y+ P AI +AVC + +GESG Q+++EL+++NPG + D
Sbjct 23 PGVDEAGFLASLRSAGIGYATPQGAIKFAQAVCVSMGNGESGPQLLDELKSQNPGLTNDH 82
Query 84 CCKFAAISAHVYCPHQITKT 103
F AI+A YCP Q+ ++
Sbjct 83 ATSFLAIAAKYYCPQQLNRS 102
>gi|333989644|ref|YP_004522258.1| hypothetical protein JDM601_1004 [Mycobacterium sp. JDM601]
gi|333485612|gb|AEF35004.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=101
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQ-AIASGKAVCALV 59
M+ L + M+GLA P HA P G DA FL +L AG+++ DQ AI++G +VC L+
Sbjct 1 MKRFLLLAGVTAMMGLAAPGHADPVGSDAAFLTALSGAGLSHRGSDQVAISAGHSVCQLM 60
Query 60 ESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQ 99
++G S + V ++T NPGF++ +FA I+A YCP
Sbjct 61 DAGLSPMDTVVAVQTTNPGFTLQRAAEFARIAAVNYCPEH 100
>gi|41408884|ref|NP_961720.1| hypothetical protein MAP2786c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|254776000|ref|ZP_05217516.1| hypothetical protein MaviaA2_15210 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41397243|gb|AAS05103.1| hypothetical protein MAP_2786c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336458835|gb|EGO37792.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=114
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/99 (43%), Positives = 60/99 (61%), Gaps = 2/99 (2%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE 60
M++ + +IGLAVPA A S DDA F+ASL++AGI Y D+A +GK VC ++
Sbjct 1 MKLFLIVAGFAAVIGLAVPARA-DSTDDA-FVASLDKAGIKYGDADKAAGAGKWVCTTLQ 58
Query 61 SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQ 99
G+ VV+ L+++N S D FAAI+ + YCP Q
Sbjct 59 GGKQMSDVVSTLQSKNSNLSDDHANTFAAIAVNAYCPDQ 97
>gi|336457566|gb|EGO36571.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=111
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/101 (39%), Positives = 59/101 (59%), Gaps = 2/101 (1%)
Query 1 MRVVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVE 60
MR ++ L ++G+A+PAHA DD FLA+L +AGITY P +AI +G+ VC L
Sbjct 1 MRTLALLAGAAALVGMAIPAHA--DSDDDAFLAALNKAGITYPDPTRAIRAGQKVCDLAG 58
Query 61 SGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQIT 101
SG + L ++ ++ NP FS F +A YCP +++
Sbjct 59 SGTTELDIIRDVHELNPAFSTAKAALFVQAAAGAYCPDRLS 99
Lambda K H
0.319 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129996839040
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40