BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1805c

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841275|ref|NP_336312.1|  hypothetical protein MT1854.1 [Myco...   233    5e-60
gi|15608942|ref|NP_216321.1|  hypothetical protein Rv1805c [Mycob...   233    8e-60
gi|45184813|ref|NP_982531.1|  AAL011Cp [Ashbya gossypii ATCC 1089...  34.3    6.8  
gi|260810244|ref|XP_002599913.1|  hypothetical protein BRAFLDRAFT...  33.9    8.6  


>gi|15841275|ref|NP_336312.1| hypothetical protein MT1854.1 [Mycobacterium tuberculosis CDC1551]
 gi|167967400|ref|ZP_02549677.1| hypothetical protein MtubH3_04922 [Mycobacterium tuberculosis 
H37Ra]
 gi|289750376|ref|ZP_06509754.1| hypothetical protein TBDG_04063 [Mycobacterium tuberculosis T92]
 gi|289757909|ref|ZP_06517287.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|13881503|gb|AAK46126.1| hypothetical protein MT1854.1 [Mycobacterium tuberculosis CDC1551]
 gi|289690963|gb|EFD58392.1| hypothetical protein TBDG_04063 [Mycobacterium tuberculosis T92]
 gi|289713473|gb|EFD77485.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=140

 Score =  233 bits (595),  Expect = 5e-60, Method: Compositional matrix adjust.
 Identities = 115/115 (100%), Positives = 115/115 (100%), Gaps = 0/115 (0%)

Query  1    MTASVVATSRERHSHKAAKQRACEITDFEPEGRFRVRKRRRGRIGTKRSSISDTDYRRDS  60
            MTASVVATSRERHSHKAAKQRACEITDFEPEGRFRVRKRRRGRIGTKRSSISDTDYRRDS
Sbjct  26   MTASVVATSRERHSHKAAKQRACEITDFEPEGRFRVRKRRRGRIGTKRSSISDTDYRRDS  85

Query  61   FRSHLLTAGAHGDADAQHKGMTAQQTTELGTPLVRALAPHGVSGRSSRKPLGLNP  115
            FRSHLLTAGAHGDADAQHKGMTAQQTTELGTPLVRALAPHGVSGRSSRKPLGLNP
Sbjct  86   FRSHLLTAGAHGDADAQHKGMTAQQTTELGTPLVRALAPHGVSGRSSRKPLGLNP  140


>gi|15608942|ref|NP_216321.1| hypothetical protein Rv1805c [Mycobacterium tuberculosis H37Rv]
 gi|31792994|ref|NP_855487.1| hypothetical protein Mb1834c [Mycobacterium bovis AF2122/97]
 gi|121637707|ref|YP_977930.1| hypothetical protein BCG_1838c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 25 more sequence titles
 
gi|148661611|ref|YP_001283134.1| hypothetical protein MRA_1817A [Mycobacterium tuberculosis H37Ra]
 gi|224990191|ref|YP_002644878.1| hypothetical protein JTY_1822 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253799151|ref|YP_003032152.1| hypothetical protein TBMG_02189 [Mycobacterium tuberculosis KZN 
1435]
 gi|289443279|ref|ZP_06433023.1| hypothetical protein TBLG_00381 [Mycobacterium tuberculosis T46]
 gi|289569877|ref|ZP_06450104.1| hypothetical protein TBJG_00244 [Mycobacterium tuberculosis T17]
 gi|289745763|ref|ZP_06505141.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289753900|ref|ZP_06513278.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289761955|ref|ZP_06521333.1| hypothetical protein TBIG_01192 [Mycobacterium tuberculosis GM 
1503]
 gi|339631858|ref|YP_004723500.1| hypothetical protein MAF_18270 [Mycobacterium africanum GM041182]
 gi|2924486|emb|CAA17726.1| HYPOTHETICAL PROTEIN Rv1805c [Mycobacterium tuberculosis H37Rv]
 gi|31618585|emb|CAD94537.1| HYPOTHETICAL PROTEIN Mb1834c [Mycobacterium bovis AF2122/97]
 gi|121493354|emb|CAL71825.1| Hypothetical protein BCG_1838c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|148505763|gb|ABQ73572.1| hypothetical protein MRA_1817A [Mycobacterium tuberculosis H37Ra]
 gi|224773304|dbj|BAH26110.1| hypothetical protein JTY_1822 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253320654|gb|ACT25257.1| hypothetical protein TBMG_02189 [Mycobacterium tuberculosis KZN 
1435]
 gi|289416198|gb|EFD13438.1| hypothetical protein TBLG_00381 [Mycobacterium tuberculosis T46]
 gi|289543631|gb|EFD47279.1| hypothetical protein TBJG_00244 [Mycobacterium tuberculosis T17]
 gi|289686291|gb|EFD53779.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289694487|gb|EFD61916.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289709461|gb|EFD73477.1| hypothetical protein TBIG_01192 [Mycobacterium tuberculosis GM 
1503]
 gi|326903409|gb|EGE50342.1| hypothetical protein TBPG_01281 [Mycobacterium tuberculosis W-148]
 gi|328458906|gb|AEB04329.1| hypothetical protein TBSG_02200 [Mycobacterium tuberculosis KZN 
4207]
 gi|339331214|emb|CCC26897.1| hypothetical protein MAF_18270 [Mycobacterium africanum GM041182]
 gi|341601734|emb|CCC64407.1| hypothetical protein BCGM_1814c [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344219627|gb|AEN00258.1| hypothetical protein MTCTRI2_1837 [Mycobacterium tuberculosis 
CTRI-2]
Length=115

 Score =  233 bits (593),  Expect = 8e-60, Method: Compositional matrix adjust.
 Identities = 115/115 (100%), Positives = 115/115 (100%), Gaps = 0/115 (0%)

Query  1    MTASVVATSRERHSHKAAKQRACEITDFEPEGRFRVRKRRRGRIGTKRSSISDTDYRRDS  60
            MTASVVATSRERHSHKAAKQRACEITDFEPEGRFRVRKRRRGRIGTKRSSISDTDYRRDS
Sbjct  1    MTASVVATSRERHSHKAAKQRACEITDFEPEGRFRVRKRRRGRIGTKRSSISDTDYRRDS  60

Query  61   FRSHLLTAGAHGDADAQHKGMTAQQTTELGTPLVRALAPHGVSGRSSRKPLGLNP  115
            FRSHLLTAGAHGDADAQHKGMTAQQTTELGTPLVRALAPHGVSGRSSRKPLGLNP
Sbjct  61   FRSHLLTAGAHGDADAQHKGMTAQQTTELGTPLVRALAPHGVSGRSSRKPLGLNP  115


>gi|45184813|ref|NP_982531.1| AAL011Cp [Ashbya gossypii ATCC 10895]
 gi|52783296|sp|Q75ET5.1|RLP7_ASHGO RecName: Full=Ribosome biogenesis protein RLP7
 gi|44980422|gb|AAS50355.1| AAL011Cp [Ashbya gossypii ATCC 10895]
Length=293

 Score = 34.3 bits (77),  Expect = 6.8, Method: Compositional matrix adjust.
 Identities = 40/128 (32%), Positives = 56/128 (44%), Gaps = 30/128 (23%)

Query  1    MTASVVATSRE-----RHSHKAAKQRACEITDFEPEGRFRVRKRRRGRIGTKRSSISDTD  55
            + AS +AT RE     R S +AAKQRA  +T     G + VR R     G +R     T 
Sbjct  53   LVASTLATEREKTRIQRVSKRAAKQRAGHVTG----GEWLVRVRAAADGGLEREK---TA  105

Query  56   YRRDSFRSHLLTAGAHGDADAQ-----HKGMTAQQTTELGT-----------PLVRALAP  99
            Y  D   + L      G A A+     H+ +T  +  E+ T           PL++ +AP
Sbjct  106  Y--DGRATLLFVVRVRGPAAAKIPRKAHRVLTLLRLAEVNTGVFVRLTAEVFPLLQVVAP  163

Query  100  HGVSGRSS  107
            + V GR S
Sbjct  164  YVVVGRPS  171


>gi|260810244|ref|XP_002599913.1| hypothetical protein BRAFLDRAFT_58116 [Branchiostoma floridae]
 gi|229285197|gb|EEN55925.1| hypothetical protein BRAFLDRAFT_58116 [Branchiostoma floridae]
Length=377

 Score = 33.9 bits (76),  Expect = 8.6, Method: Compositional matrix adjust.
 Identities = 20/57 (36%), Positives = 29/57 (51%), Gaps = 3/57 (5%)

Query  4    SVVATSRERH--SHKAAKQRACEITDFEPEGR-FRVRKRRRGRIGTKRSSISDTDYR  57
            + + ++ ERH   H A K   CE  DF   G+ + V+ RRR   G K  S  + DY+
Sbjct  75   TYIKSNVERHMMCHSAVKPYKCEECDFRAVGKSYLVKHRRRRHTGEKPYSCQECDYK  131



Lambda     K      H
   0.317    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131043835296


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40