BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1806

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841276|ref|NP_336313.1|  PE family protein [Mycobacterium tu...   187    4e-46
gi|289447420|ref|ZP_06437164.1|  PE family protein [Mycobacterium...   155    3e-36
gi|289750379|ref|ZP_06509757.1|  PE family protein [Mycobacterium...   139    2e-31
gi|342861310|ref|ZP_08717958.1|  hypothetical protein MCOL_20601 ...  90.9    6e-17
gi|333989643|ref|YP_004522257.1|  PE-PGRS family protein [Mycobac...  89.7    1e-16
gi|296164186|ref|ZP_06846786.1|  PE family protein [Mycobacterium...  88.6    3e-16
gi|254820293|ref|ZP_05225294.1|  hypothetical protein MintA_10211...  88.2    3e-16
gi|254775399|ref|ZP_05216915.1|  hypothetical protein MaviaA2_121...  88.2    3e-16
gi|240172899|ref|ZP_04751558.1|  PE family protein [Mycobacterium...  87.8    5e-16
gi|296170606|ref|ZP_06852185.1|  PE family protein [Mycobacterium...  87.4    6e-16
gi|183982677|ref|YP_001850968.1|  PE family protein, PE19_1 [Myco...  87.4    6e-16
gi|118618471|ref|YP_906803.1|  PE family protein [Mycobacterium u...  87.0    7e-16
gi|333989806|ref|YP_004522420.1|  PE family protein PE19 [Mycobac...  87.0    9e-16
gi|342861305|ref|ZP_08717953.1|  hypothetical protein MCOL_20576 ...  86.3    1e-15
gi|183984754|ref|YP_001853045.1|  PE-PGRS family protein [Mycobac...  84.0    7e-15
gi|15843089|ref|NP_338126.1|  PE family protein [Mycobacterium tu...  84.0    8e-15
gi|296164779|ref|ZP_06847341.1|  PE family protein [Mycobacterium...  82.8    2e-14
gi|41407605|ref|NP_960441.1|  hypothetical protein MAP1507 [Mycob...  82.4    2e-14
gi|31794651|ref|NP_857144.1|  PE family protein [Mycobacterium bo...  82.4    2e-14
gi|333989636|ref|YP_004522250.1|  PE family protein PE8 [Mycobact...  81.6    4e-14
gi|254774223|ref|ZP_05215739.1|  PE family protein [Mycobacterium...  81.3    5e-14
gi|296165761|ref|ZP_06848275.1|  PE family protein [Mycobacterium...  80.5    7e-14
gi|41408674|ref|NP_961510.1|  hypothetical protein MAP2576c [Myco...  80.5    9e-14
gi|333990542|ref|YP_004523156.1|  PE-PGRS family protein [Mycobac...  79.0    2e-13
gi|342862086|ref|ZP_08718729.1|  PE family protein [Mycobacterium...  79.0    2e-13
gi|240172414|ref|ZP_04751073.1|  PE family protein, PE19_1 [Mycob...  78.6    3e-13
gi|296166686|ref|ZP_06849111.1|  PE family protein [Mycobacterium...  78.6    3e-13
gi|254822878|ref|ZP_05227879.1|  PE family protein [Mycobacterium...  77.4    6e-13
gi|118619579|ref|YP_907911.1|  PE family protein [Mycobacterium u...  77.0    9e-13
gi|212596283|gb|ACJ35566.1|  PE5 [Mycobacterium intracellulare AT...  77.0    9e-13
gi|15841256|ref|NP_336293.1|  PE family protein [Mycobacterium tu...  75.9    2e-12
gi|240172420|ref|ZP_04751079.1|  PE family protein, PE19_1 [Mycob...  75.9    2e-12
gi|342861297|ref|ZP_08717945.1|  hypothetical protein MCOL_20536 ...  75.9    2e-12
gi|254364620|ref|ZP_04980666.1|  PE family protein [Mycobacterium...  75.1    3e-12
gi|183982680|ref|YP_001850971.1|  PE family protein, PE19 [Mycoba...  75.1    3e-12
gi|118619702|ref|YP_908034.1|  PE family protein [Mycobacterium u...  74.7    4e-12
gi|183984422|ref|YP_001852713.1|  PE family protein, PE8 [Mycobac...  74.7    4e-12
gi|118618467|ref|YP_906799.1|  PE family protein [Mycobacterium u...  73.9    8e-12
gi|254365420|ref|ZP_04981465.1|  PE family protein [Mycobacterium...  73.6    9e-12
gi|333992874|ref|YP_004525488.1|  PE-PGRS family protein [Mycobac...  73.6    1e-11
gi|240173303|ref|ZP_04751961.1|  PE family protein [Mycobacterium...  73.2    1e-11
gi|118619370|ref|YP_907702.1|  PE family protein [Mycobacterium u...  72.8    1e-11
gi|183985086|ref|YP_001853377.1|  PE family protein, PE32 [Mycoba...  72.8    2e-11
gi|183980964|ref|YP_001849255.1|  PE-PGRS family protein [Mycobac...  72.8    2e-11
gi|240173524|ref|ZP_04752182.1|  PE family protein, PE19_1 [Mycob...  72.4    2e-11
gi|240170799|ref|ZP_04749458.1|  PE-PGRS family protein [Mycobact...  72.4    2e-11
gi|240169038|ref|ZP_04747697.1|  hypothetical protein MkanA1_0697...  72.0    3e-11
gi|296165770|ref|ZP_06848283.1|  PE family protein [Mycobacterium...  68.9    2e-10
gi|118619178|ref|YP_907510.1|  PE-PGRS family protein [Mycobacter...  68.6    3e-10
gi|31792979|ref|NP_855472.1|  PE family protein [Mycobacterium bo...  67.8    5e-10


>gi|15841276|ref|NP_336313.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31792995|ref|NP_855488.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116919|ref|YP_177843.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 73 more sequence titles
 Length=99

 Score =  187 bits (476),  Expect = 4e-46, Method: Compositional matrix adjust.
 Identities = 99/99 (100%), Positives = 99/99 (100%), Gaps = 0/99 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA
Sbjct  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATEAANIIAVS  99
           MYQAVGAQAIAMNEAFVAMLGASADSYAATEAANIIAVS
Sbjct  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATEAANIIAVS  99


>gi|289447420|ref|ZP_06437164.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289420378|gb|EFD17579.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
Length=97

 Score =  155 bits (391),  Expect = 3e-36, Method: Compositional matrix adjust.
 Identities = 80/80 (100%), Positives = 80/80 (100%), Gaps = 0/80 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA
Sbjct  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60

Query  61  MYQAVGAQAIAMNEAFVAML  80
           MYQAVGAQAIAMNEAFVAML
Sbjct  61  MYQAVGAQAIAMNEAFVAML  80


>gi|289750379|ref|ZP_06509757.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289690966|gb|EFD58395.1| PE family protein [Mycobacterium tuberculosis T92]
Length=76

 Score =  139 bits (349),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 75/76 (99%), Positives = 76/76 (100%), Gaps = 0/76 (0%)

Query  24  VIAARNAVAAPATAELAPAAADEVSALTATQFNFHAAMYQAVGAQAIAMNEAFVAMLGAS  83
           +IAARNAVAAPATAELAPAAADEVSALTATQFNFHAAMYQAVGAQAIAMNEAFVAMLGAS
Sbjct  1   MIAARNAVAAPATAELAPAAADEVSALTATQFNFHAAMYQAVGAQAIAMNEAFVAMLGAS  60

Query  84  ADSYAATEAANIIAVS  99
           ADSYAATEAANIIAVS
Sbjct  61  ADSYAATEAANIIAVS  76


>gi|342861310|ref|ZP_08717958.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
 gi|342131210|gb|EGT84491.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score = 90.9 bits (224),  Expect = 6e-17, Method: Compositional matrix adjust.
 Identities = 53/91 (59%), Positives = 64/91 (71%), Gaps = 0/91 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+ALA AAG L+ +GS ++A+NA AA  T  + PAAADEVSALTA QF  H  
Sbjct  1   MSFVTTQPEALAAAAGNLQTIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHGQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATE  91
           MYQAV AQA A++E FV  L  S+ SYA TE
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSTSSGSYAVTE  91


>gi|333989643|ref|YP_004522257.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333485611|gb|AEF35003.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 50/87 (58%), Positives = 63/87 (73%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+ALA AAG L+ +GS + A+NA A+  T  + PAAADEVSALTA QF  HA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSALNAQNAAASAPTTGVVPAAADEVSALTAAQFATHAT  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           +YQ+V AQA A++E FVA L  SA+SY
Sbjct  61  LYQSVAAQAAAIHEMFVATLNGSAESY  87


>gi|296164186|ref|ZP_06846786.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900461|gb|EFG79867.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 53/88 (61%), Positives = 60/88 (69%), Gaps = 0/88 (0%)

Query  4   VLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAAMYQ  63
           V V P  L  AAG L+ +GS ++A NA AA  T  + PAAADEVSALTA QF  HA MYQ
Sbjct  4   VTVDPQMLTAAAGTLQGIGSAMSAENAPAAAPTTGVVPAAADEVSALTALQFAAHAQMYQ  63

Query  64  AVGAQAIAMNEAFVAMLGASADSYAATE  91
           AV AQA A++E F   LG SADSYA TE
Sbjct  64  AVSAQAAAIHEMFANTLGVSADSYAVTE  91


>gi|254820293|ref|ZP_05225294.1| hypothetical protein MintA_10211 [Mycobacterium intracellulare 
ATCC 13950]
 gi|212596298|gb|ACJ35567.1| PE7 [Mycobacterium intracellulare ATCC 13950]
Length=99

 Score = 88.2 bits (217),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 63/87 (73%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+ALA AAG L+ +GS ++A+NA AA  T  + PAAADEVSALTA QF  HA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           MYQAV AQA A++EAFV  L  S+ SY
Sbjct  61  MYQAVSAQAQAIHEAFVNTLSTSSGSY  87


>gi|254775399|ref|ZP_05216915.1| hypothetical protein MaviaA2_12121 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|212595819|gb|ACJ35525.1| PE7 [Mycobacterium avium subsp. avium]
 gi|336457654|gb|EGO36658.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=99

 Score = 88.2 bits (217),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 63/87 (73%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+ALA AAG L+ +GS ++A+NA AA  T  + PAAADEVSALTA QF  HA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           MYQAV AQA A++EAFV  L  S+ SY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSTSSGSY  87


>gi|240172899|ref|ZP_04751558.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 87.8 bits (216),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 47/87 (55%), Positives = 64/87 (74%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M FV+  P+ LA AAG L+ +GS ++A+N  A+  T  + PAAAD+VSALTA +F+ HA 
Sbjct  1   MTFVVTQPETLAAAAGNLQEIGSAVSAQNVAASAHTTSVTPAAADQVSALTAARFSAHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           +YQ V AQA A+++AFVA L ASA+SY
Sbjct  61  VYQVVSAQAAAIHQAFVAALTASANSY  87


>gi|296170606|ref|ZP_06852185.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894738|gb|EFG74468.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 87.4 bits (215),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 52/87 (60%), Positives = 63/87 (73%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+ALA AAG L+ +GS ++A+NA AA  T  + PAAADEVSALTA QF  HA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           MYQAV AQA A++EAFV  L  S+ SY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSMSSGSY  87


>gi|183982677|ref|YP_001850968.1| PE family protein, PE19_1 [Mycobacterium marinum M]
 gi|183176003|gb|ACC41113.1| PE family protein, PE19_1 [Mycobacterium marinum M]
Length=99

 Score = 87.4 bits (215),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 49/87 (57%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M++V   P+ALA AA  L+ +GS ++++NA AA  T  + PAAADEVSALTA QF  HA 
Sbjct  1   MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           MYQAV AQA A++E FV  LG S+ SY
Sbjct  61  MYQAVSAQASAIHEMFVNTLGISSGSY  87


>gi|118618471|ref|YP_906803.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570581|gb|ABL05332.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score = 87.0 bits (214),  Expect = 7e-16, Method: Compositional matrix adjust.
 Identities = 49/87 (57%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M++V   P+ALA AA  L+ +GS ++++NA AA  T  + PAAADEVSALTA QF  HA 
Sbjct  1   MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTTGVVPAAADEVSALTAAQFVAHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           MYQAV AQA A++E FV  LG S+ SY
Sbjct  61  MYQAVSAQASAIHEMFVNTLGISSGSY  87


>gi|333989806|ref|YP_004522420.1| PE family protein PE19 [Mycobacterium sp. JDM601]
 gi|333485774|gb|AEF35166.1| PE family protein PE19 [Mycobacterium sp. JDM601]
Length=99

 Score = 87.0 bits (214),  Expect = 9e-16, Method: Compositional matrix adjust.
 Identities = 51/87 (59%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+ALA AA +LR +GSV+AA+N  AA  T  L PAAADEVSALTA  F+ HA 
Sbjct  1   MSFVNTQPEALASAASELRGIGSVVAAQNMAAAGPTTVLPPAAADEVSALTAALFSAHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
            YQ V AQA A++EAFV  L  S++SY
Sbjct  61  AYQEVSAQAAAIHEAFVRTLALSSESY  87


>gi|342861305|ref|ZP_08717953.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
 gi|342131205|gb|EGT84486.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score = 86.3 bits (212),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 51/87 (59%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+ALA AAG L+ +GS ++A+NA AA  T  + PAAADEVSALTA QF  HA 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           MYQAV AQA A++E FV  L  S+ SY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSTSSGSY  87


>gi|183984754|ref|YP_001853045.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183178080|gb|ACC43190.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=99

 Score = 84.0 bits (206),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 57/98 (59%), Positives = 65/98 (67%), Gaps = 2/98 (2%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVA-APATAELAPAAADEVSALTATQFNFHA  59
           MAFV   P+AL  AA  L  VG+ ++A NA A AP T  + PAAADEVSALTA  F  H 
Sbjct  1   MAFVTSAPEALTAAALNLHSVGAGMSAGNAAAMAPITG-VVPAAADEVSALTAAHFAAHG  59

Query  60  AMYQAVGAQAIAMNEAFVAMLGASADSYAATEAANIIA  97
           AMYQ + AQA A++E FV  L AS  SYA TEAAN IA
Sbjct  60  AMYQTLSAQAQAIHEMFVTTLQASGGSYAETEAANAIA  97


>gi|15843089|ref|NP_338126.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|57117110|ref|YP_177975.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121639395|ref|YP_979619.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 75 more sequence titles
 Length=98

 Score = 84.0 bits (206),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 48/89 (54%), Positives = 58/89 (66%), Gaps = 0/89 (0%)

Query  8   PDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAAMYQAVGA  67
           P+ LA AAG+LR +G+ + A NA AA  T  + P AADEVS L ATQF  HAA YQ   A
Sbjct  7   PEMLAAAAGELRSLGATLKASNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQTASA  66

Query  68  QAIAMNEAFVAMLGASADSYAATEAANII  96
           +A  ++E FV  L  SA SYA TEAAN +
Sbjct  67  KAAVIHEQFVTTLATSASSYADTEAANAV  95


>gi|296164779|ref|ZP_06847341.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899880|gb|EFG79324.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 82.8 bits (203),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 53/91 (59%), Positives = 64/91 (71%), Gaps = 0/91 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+AL+ AAG L+ +GS + A+NA AA  T  + PAAADEVSALTA QF  HA 
Sbjct  1   MSFVTTQPEALSAAAGSLQSIGSALNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATE  91
           MYQAV AQA A++E FV  L  S+ SYA TE
Sbjct  61  MYQAVSAQAAAIHEMFVNTLSMSSGSYAVTE  91


>gi|41407605|ref|NP_960441.1| hypothetical protein MAP1507 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395958|gb|AAS03824.1| PE_4 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|225698451|gb|ACO07343.1| PE protein [Mycobacterium avium subsp. paratuberculosis]
Length=99

 Score = 82.4 bits (202),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 50/87 (58%), Positives = 62/87 (72%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+ALA AAG L+ +G  ++A+NA AA  T  + PAAADEVSALTA QF  +A 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGWTLSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAYAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           MYQAV AQA A++EAFV  L  S+ SY
Sbjct  61  MYQAVSAQAAAIHEAFVNTLSTSSVSY  87


>gi|31794651|ref|NP_857144.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|31620248|emb|CAD95691.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
Length=98

 Score = 82.4 bits (202),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 47/89 (53%), Positives = 57/89 (65%), Gaps = 0/89 (0%)

Query  8   PDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAAMYQAVGA  67
           P+ LA AAG+LR +G+ +   NA AA  T  + P AADEVS L ATQF  HAA YQ   A
Sbjct  7   PEMLAAAAGELRSLGATLKVSNAAAAVPTTGVVPPAADEVSLLLATQFRTHAATYQTASA  66

Query  68  QAIAMNEAFVAMLGASADSYAATEAANII  96
           +A  ++E FV  L  SA SYA TEAAN +
Sbjct  67  KAAVIHEQFVTTLATSASSYADTEAANAV  95


>gi|333989636|ref|YP_004522250.1| PE family protein PE8 [Mycobacterium sp. JDM601]
 gi|333485604|gb|AEF34996.1| PE family protein PE8 [Mycobacterium sp. JDM601]
Length=273

 Score = 81.6 bits (200),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 45/91 (50%), Positives = 58/91 (64%), Gaps = 0/91 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+A+A  A  L+ +GS + A+N  AA  T  +APA ADEVS L ATQF  +  
Sbjct  1   MSFVTTHPEAMAATASNLQAIGSAMTAQNTAAAAPTTGIAPAGADEVSVLQATQFAAYGQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATE  91
           +YQ + AQA A+ E FV  L  SADSY +TE
Sbjct  61  LYQQISAQAAAIQEMFVNTLRTSADSYGSTE  91


>gi|254774223|ref|ZP_05215739.1| PE family protein [Mycobacterium avium subsp. avium ATCC 25291]
Length=173

 Score = 81.3 bits (199),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 50/99 (51%), Positives = 63/99 (64%), Gaps = 0/99 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+AL   A  L  +GS + A+NA AA  T  +APAAADEVSAL A QF+ +  
Sbjct  1   MSFVTTRPEALLAVASMLEGLGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGT  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATEAANIIAVS  99
            YQ V AQA A+++  V  L  +ADSY ATEAAN +  S
Sbjct  61  WYQQVSAQAKAIHQTLVQNLDTNADSYGATEAANRVNTS  99


>gi|296165761|ref|ZP_06848275.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898886|gb|EFG78378.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 80.5 bits (197),  Expect = 7e-14, Method: Compositional matrix adjust.
 Identities = 56/99 (57%), Positives = 65/99 (66%), Gaps = 0/99 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+ LA  A  LR +GS +A +NA A+ +T  + PA ADEVSALTA QF  HA 
Sbjct  1   MSFVTAQPEMLAATANDLRGIGSALAVQNAAASRSTTGVIPAGADEVSALTAVQFAAHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATEAANIIAVS  99
           MYQAV AQA A  + FV  L  SA SYAATEA N IA S
Sbjct  61  MYQAVSAQAAAAYDLFVRTLAVSAGSYAATEAINTIAAS  99


>gi|41408674|ref|NP_961510.1| hypothetical protein MAP2576c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118463687|ref|YP_880590.1| PE family protein [Mycobacterium avium 104]
 gi|41397032|gb|AAS04893.1| PE_6 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118164974|gb|ABK65871.1| PE family protein [Mycobacterium avium 104]
 gi|212595794|gb|ACJ35523.1| PE5 [Mycobacterium avium subsp. avium]
Length=278

 Score = 80.5 bits (197),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 50/99 (51%), Positives = 63/99 (64%), Gaps = 0/99 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+AL   A  L  +GS + A+NA AA  T  +APAAADEVSAL A QF+ +  
Sbjct  1   MSFVTTRPEALLAVASMLEGLGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGT  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATEAANIIAVS  99
            YQ V AQA A+++  V  L  +ADSY ATEAAN +  S
Sbjct  61  WYQQVSAQAKAIHQTLVQNLDTNADSYGATEAANRVNTS  99


>gi|333990542|ref|YP_004523156.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333486510|gb|AEF35902.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 50/87 (58%), Positives = 65/87 (75%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+AL  AAG L  +GS ++A+NA AA  T  + PAAADEVSALTA QF  HA+
Sbjct  1   MSFVNTQPEALTAAAGNLAAIGSALSAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAS  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           MYQ++ AQA A+++AFVA L +SA+SY
Sbjct  61  MYQSISAQAEAIHQAFVATLNSSANSY  87


>gi|342862086|ref|ZP_08718729.1| PE family protein [Mycobacterium colombiense CECT 3035]
 gi|342130390|gb|EGT83705.1| PE family protein [Mycobacterium colombiense CECT 3035]
Length=268

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 49/99 (50%), Positives = 64/99 (65%), Gaps = 0/99 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+AL   A  L+ +GS + A+NA AA  T  +APAAADEVSAL A QF+ + A
Sbjct  1   MSFVTTRPEALLATASMLQALGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGA  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATEAANIIAVS  99
            YQ V AQA A+++  VA L ++A SY  TE AN +  S
Sbjct  61  WYQQVSAQAKAVHQTMVANLNSNAGSYGETETANKVTTS  99


>gi|240172414|ref|ZP_04751073.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=281

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 46/94 (49%), Positives = 62/94 (66%), Gaps = 0/94 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV+  P+ L  A G+L  +GS ++  N  AA   A + PAAADEVS +TA  F  +  
Sbjct  1   MSFVITLPEMLMAAVGRLEAIGSAVSTANVTAALPIAGVIPAAADEVSMVTAASFTAYGQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATEAAN  94
           +YQA+ A+A  ++E FV  LG SA+SYAATEAAN
Sbjct  61  LYQAISAEAHLIHEQFVKALGLSANSYAATEAAN  94


>gi|296166686|ref|ZP_06849111.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295897951|gb|EFG77532.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 51/98 (53%), Positives = 65/98 (67%), Gaps = 0/98 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+ V+  PD L+ AAG+L+ + S + A NA AA  T  +APAA+D VS LTATQF+ HA 
Sbjct  1   MSIVIAQPDMLSAAAGELQSINSALQAGNAAAAGPTTAVAPAASDAVSILTATQFSAHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATEAANIIAV  98
           +YQA+ AQA    E    +LG  A SYAATEAAN + V
Sbjct  61  LYQAISAQAARAQEQLATVLGICAGSYAATEAANSVLV  98


>gi|254822878|ref|ZP_05227879.1| PE family protein [Mycobacterium intracellulare ATCC 13950]
Length=176

 Score = 77.4 bits (189),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 61/98 (63%), Gaps = 0/98 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+AL  AA  L  +GS + A+NA AA  T  +APAAADEVSAL A QF+ + A
Sbjct  1   MSFVTTRPEALMAAASMLEALGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGA  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATEAANIIAV  98
            YQ V AQA A+++  V  L  SA SY  TE AN +  
Sbjct  61  WYQQVSAQAKAIHQTMVNNLDTSAGSYGETETANRVTT  98


>gi|118619579|ref|YP_907911.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|183984578|ref|YP_001852869.1| PE family protein [Mycobacterium marinum M]
 gi|118571689|gb|ABL06440.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|183177904|gb|ACC43014.1| PE family protein [Mycobacterium marinum M]
Length=99

 Score = 77.0 bits (188),  Expect = 9e-13, Method: Compositional matrix adjust.
 Identities = 47/87 (55%), Positives = 64/87 (74%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV+  P+ LA AAG L+ VGS ++A++A A   T  +APAAAD+VSALTA +F+ HA 
Sbjct  1   MSFVVTQPERLAAAAGSLQEVGSAVSAQSAAAVAPTTSVAPAAADQVSALTAARFSAHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           +YQ V AQA+A+++ FVA L A A SY
Sbjct  61  LYQMVSAQAVAIHDRFVAALAAGAQSY  87


>gi|212596283|gb|ACJ35566.1| PE5 [Mycobacterium intracellulare ATCC 13950]
Length=265

 Score = 77.0 bits (188),  Expect = 9e-13, Method: Compositional matrix adjust.
 Identities = 49/96 (52%), Positives = 61/96 (64%), Gaps = 0/96 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+AL  AA  L  +GS + A+NA AA  T  +APAAADEVSAL A QF+ + A
Sbjct  1   MSFVTTRPEALMAAASMLEALGSSMDAQNAAAAAPTTSIAPAAADEVSALQAAQFSAYGA  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATEAANII  96
            YQ V AQA A+++  V  L  SA SY  TE AN +
Sbjct  61  WYQQVSAQAKAIHQTMVNNLDTSAGSYGETETANRV  96


>gi|15841256|ref|NP_336293.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31792976|ref|NP_855469.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116910|ref|YP_177834.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 60 more sequence titles
 Length=99

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 50/87 (58%), Positives = 61/87 (71%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+ALA AAG L+ +GS + A+NA AA  T  + PAAADEVSALTA QF  HA 
Sbjct  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           +YQAV AQA A++E FV  L  S+ SY
Sbjct  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87


>gi|240172420|ref|ZP_04751079.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 47/98 (48%), Positives = 62/98 (64%), Gaps = 0/98 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+ +   P+ L  AA +L+ +GS + +RNA AA AT  + P A DEVSALTA  F  HA 
Sbjct  1   MSILTTEPEMLQSAATKLQTLGSSMISRNAAAAAATMNVIPPAGDEVSALTAMHFAAHAK  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATEAANIIAV  98
            +QAV  +AIA++EAFVA L A  DSY   EA N + +
Sbjct  61  AFQAVYTRAIAIHEAFVATLAACGDSYTVVEATNRVGL  98


>gi|342861297|ref|ZP_08717945.1| hypothetical protein MCOL_20536 [Mycobacterium colombiense CECT 
3035]
 gi|342131197|gb|EGT84478.1| hypothetical protein MCOL_20536 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 47/88 (54%), Positives = 58/88 (66%), Gaps = 2/88 (2%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARN-AVAAPATAELAPAAADEVSALTATQFNFHA  59
           M FV   P++L IAA +L  +GS + A+N A AAP T  +APAAADEVS LTA QF  H 
Sbjct  1   MNFVTAQPESLDIAASRLHEIGSALTAQNSATAAPMTG-VAPAAADEVSLLTAAQFARHG  59

Query  60  AMYQAVGAQAIAMNEAFVAMLGASADSY  87
             +QA+ AQA A++E FV  L  SA SY
Sbjct  60  QTFQALSAQAAAIHENFVTTLQVSAGSY  87


>gi|254364620|ref|ZP_04980666.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134150134|gb|EBA42179.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=99

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 50/87 (58%), Positives = 60/87 (69%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M FV   P+ALA AAG L+ +GS + A+NA AA  T  + PAAADEVSALTA QF  HA 
Sbjct  1   MPFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           +YQAV AQA A++E FV  L  S+ SY
Sbjct  61  IYQAVSAQAAAIHEMFVNTLQMSSGSY  87


>gi|183982680|ref|YP_001850971.1| PE family protein, PE19 [Mycobacterium marinum M]
 gi|183176006|gb|ACC41116.1| PE family protein, PE19 [Mycobacterium marinum M]
Length=99

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 49/87 (57%), Positives = 61/87 (71%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+ALA AA  L+ +G+ ++A+NA AA  T  + PAAADEVSALTA QF  HA 
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           MYQAV AQA A++E FV  L  S+ SY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLATSSGSY  87


>gi|118619702|ref|YP_908034.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118571812|gb|ABL06563.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=274

 Score = 74.7 bits (182),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 59/94 (63%), Gaps = 0/94 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+F+   P+ L  AA QL  +GS ++A+NA AA  T  +APAA DEVSAL A  F  +  
Sbjct  1   MSFLKTVPEELTAAAAQLGTIGSSMSAQNAAAAAPTTVIAPAALDEVSALQAALFTAYGT  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATEAAN  94
            YQ V A A AM++ FV  LGASA +Y ATE  N
Sbjct  61  YYQQVSADAQAMHDMFVNTLGASAGTYGATENLN  94


>gi|183984422|ref|YP_001852713.1| PE family protein, PE8 [Mycobacterium marinum M]
 gi|183177748|gb|ACC42858.1| PE family protein, PE8 [Mycobacterium marinum M]
Length=274

 Score = 74.7 bits (182),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 59/94 (63%), Gaps = 0/94 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+F+   P+ L  AA QL  +GS ++A+NA AA  T  +APAA DEVSAL A  F  +  
Sbjct  1   MSFLKTVPEELTAAAAQLGTIGSSMSAQNAAAAAPTTVIAPAALDEVSALQAALFTAYGT  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATEAAN  94
            YQ V A A AM++ FV  LGASA +Y ATE  N
Sbjct  61  YYQQVSADAQAMHDMFVNTLGASAGTYGATENLN  94


>gi|118618467|ref|YP_906799.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570577|gb|ABL05328.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score = 73.9 bits (180),  Expect = 8e-12, Method: Compositional matrix adjust.
 Identities = 48/87 (56%), Positives = 60/87 (69%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+ALA AA  L+ +G+ ++A+NA AA  T  + PAAADEVSALTA QF  HA 
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAGHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           MYQAV AQA  ++E FV  L  S+ SY
Sbjct  61  MYQAVSAQAAVIHEMFVNTLATSSGSY  87


>gi|254365420|ref|ZP_04981465.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134150933|gb|EBA42978.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=275

 Score = 73.6 bits (179),  Expect = 9e-12, Method: Compositional matrix adjust.
 Identities = 48/95 (51%), Positives = 63/95 (67%), Gaps = 1/95 (1%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAA-PATAELAPAAADEVSALTATQFNFHA  59
           M+F+   P+ LA AAG+L  +GS + A+NA AA P T  + PAAADE+S L A  F  + 
Sbjct  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60

Query  60  AMYQAVGAQAIAMNEAFVAMLGASADSYAATEAAN  94
            +YQ V A+A A+ + FV  LG SA +YAATEAAN
Sbjct  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAAN  95


>gi|333992874|ref|YP_004525488.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333488842|gb|AEF38234.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=95

 Score = 73.6 bits (179),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 47/92 (52%), Positives = 62/92 (68%), Gaps = 0/92 (0%)

Query  7   CPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAAMYQAVG  66
            P+ L   A +L  +G+ +AA+N  AA  T  + PAAADEVSALTA QF  HA MYQA+ 
Sbjct  4   LPEELTATAAELSSIGNAVAAQNTAAAGPTTGVVPAAADEVSALTAAQFARHAQMYQAIS  63

Query  67  AQAIAMNEAFVAMLGASADSYAATEAANIIAV  98
            +A  ++E FV ML  +A SYAAT+AAN I++
Sbjct  64  KRAAVVHERFVIMLQRNAQSYAATDAANAISI  95


>gi|240173303|ref|ZP_04751961.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=146

 Score = 73.2 bits (178),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 40/87 (46%), Positives = 55/87 (64%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+F+   PD LA AAG+L+ +G+ + A N  AA  T  + PAAADEVS L A+ F  + +
Sbjct  1   MSFLTTQPDELAAAAGKLQTIGATMEAENVAAAVPTTGVIPAAADEVSMLQASMFTAYGS  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           +YQ + A+A AM E  V  LG SA +Y
Sbjct  61  LYQQISAEAAAMYEMLVNTLGVSAGTY  87


>gi|118619370|ref|YP_907702.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118571480|gb|ABL06231.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score = 72.8 bits (177),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 48/99 (49%), Positives = 62/99 (63%), Gaps = 0/99 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+ V   P+ +A  A +L+ + S   A + VA   T  + P AAD VS LTA QF  HA 
Sbjct  1   MSHVTAQPEIVAGVALELQAINSAARAGDEVAVAPTTGVVPPAADLVSMLTAAQFAAHAR  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATEAANIIAVS  99
           +YQA+ AQA A+ +  V +LG SA SYAATEAAN +AVS
Sbjct  61  VYQAISAQAAAVQDELVTVLGISAGSYAATEAANTVAVS  99


>gi|183985086|ref|YP_001853377.1| PE family protein, PE32 [Mycobacterium marinum M]
 gi|183178412|gb|ACC43522.1| PE family protein, PE32 [Mycobacterium marinum M]
Length=99

 Score = 72.8 bits (177),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 48/99 (49%), Positives = 62/99 (63%), Gaps = 0/99 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+ V   P+ +A  A +L+ + S   A + VA   T  + P AAD VS LTA QF  HA 
Sbjct  1   MSHVTAQPEIVAGVALELQAINSAARAGDEVAVAPTTGVVPPAADLVSMLTAAQFAAHAR  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATEAANIIAVS  99
           +YQA+ AQA A+ +  V +LG SA SYAATEAAN +AVS
Sbjct  61  VYQAISAQAAAVQDQLVTVLGISAGSYAATEAANTVAVS  99


>gi|183980964|ref|YP_001849255.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183174290|gb|ACC39400.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=1425

 Score = 72.8 bits (177),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 45/95 (48%), Positives = 57/95 (60%), Gaps = 0/95 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+F +V P  L  AA  L  +G+ I   +  AA +T  L PAAADEVSA  A+ F  HA 
Sbjct  1   MSFTVVEPQMLTAAAADLAKIGAAIDTVSTAAAASTTNLLPAAADEVSAAIASLFGTHAL  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATEAANI  95
            YQA+GAQA   ++ FV  L  +A  YAATE AN+
Sbjct  61  AYQAIGAQAATFHDGFVQALSRAASRYAATEVANV  95


>gi|240173524|ref|ZP_04752182.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 72.4 bits (176),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 49/87 (57%), Positives = 61/87 (71%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+ALA AA  L+ +G+ ++A+NA AA  T  + PAAADEVSALTA QF  HA 
Sbjct  1   MSFVTTQPEALAAAASSLQGIGTTMSAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           MYQAV AQA A++E FV  L  S+ SY
Sbjct  61  MYQAVSAQAAAIHEMFVNTLATSSGSY  87


>gi|240170799|ref|ZP_04749458.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478]
Length=99

 Score = 72.4 bits (176),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 47/87 (55%), Positives = 56/87 (65%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+AL  AAG L+ +GS + A NA A      + PAAADEVSALTA  F  H  
Sbjct  1   MSFVTSEPEALISAAGNLQSIGSAMNASNAAAIAPITGVVPAAADEVSALTAAHFAAHGT  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           +YQAV AQA A++E FV  LGAS  SY
Sbjct  61  LYQAVSAQAAAIHELFVTTLGASGGSY  87


>gi|240169038|ref|ZP_04747697.1| hypothetical protein MkanA1_06979 [Mycobacterium kansasii ATCC 
12478]
Length=99

 Score = 72.0 bits (175),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 47/89 (53%), Positives = 58/89 (66%), Gaps = 0/89 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+F+   PD LA AA  L  VG+ ++A N+ AA  T  + P AADEVSAL A QF  HAA
Sbjct  1   MSFLTAQPDVLAAAAANLGSVGAALSAGNSAAAAPTTGVLPPAADEVSALVAVQFAAHAA  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAA  89
            YQAV A+A  +++  VA L ASA SYAA
Sbjct  61  TYQAVSARAAGIHDQLVATLAASAGSYAA  89


>gi|296165770|ref|ZP_06848283.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898876|gb|EFG78369.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=105

 Score = 68.9 bits (167),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 47/89 (53%), Positives = 60/89 (68%), Gaps = 0/89 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           ++FV   P+AL+ AAG+L  +GS +AA+NA A+  T  + PAA DEVS L A QF  HA 
Sbjct  7   VSFVTTQPEALSAAAGKLAVIGSALAAQNAAASAPTTGVVPAATDEVSVLIAAQFATHAQ  66

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAA  89
           MYQ V AQA  ++E+FV ML   A SYAA
Sbjct  67  MYQTVCAQATMIHESFVKMLHLGAGSYAA  95


>gi|118619178|ref|YP_907510.1| PE-PGRS family protein [Mycobacterium ulcerans Agy99]
 gi|118571288|gb|ABL06039.1| PE-PGRS family protein [Mycobacterium ulcerans Agy99]
Length=176

 Score = 68.6 bits (166),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 45/98 (46%), Positives = 64/98 (66%), Gaps = 0/98 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+ V+V P+ +A AA     +G ++   +A AA +T EL PAAADEVSA  A  F+ HA 
Sbjct  1   MSDVMVAPELVAAAANDYAKIGVLLGEAHAAAAASTVELLPAAADEVSAGIAHLFSEHAE  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSYAATEAANIIAV  98
            YQ V +QA+A ++ FVA + ASA  YA+ EAAN +++
Sbjct  61  DYQKVASQAVAFHDRFVAQVNASAGGYASAEAANAVSL  98


>gi|31792979|ref|NP_855472.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116913|ref|YP_177837.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121637692|ref|YP_977915.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 59 more sequence titles
 Length=99

 Score = 67.8 bits (164),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 49/87 (57%), Positives = 60/87 (69%), Gaps = 0/87 (0%)

Query  1   MAFVLVCPDALAIAAGQLRHVGSVIAARNAVAAPATAELAPAAADEVSALTATQFNFHAA  60
           M+FV   P+ALA AA  L+ +G+ + A+NA AA  T  + PAAADEVSALTA QF  HA 
Sbjct  1   MSFVTTQPEALAAAAANLQGIGTTMNAQNAAAAAPTTGVVPAAADEVSALTAAQFAAHAQ  60

Query  61  MYQAVGAQAIAMNEAFVAMLGASADSY  87
           MYQ V AQA A++E FV  L AS+ SY
Sbjct  61  MYQTVSAQAAAIHEMFVNTLVASSGSY  87



Lambda     K      H
   0.320    0.123    0.329 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129711308684


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40