BLAST Search Results


BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1810

Length=118
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841280|ref|NP_336317.1|  hypothetical protein MT1858 [Mycoba...   237    3e-61
gi|15608947|ref|NP_216326.1|  hypothetical protein Rv1810 [Mycoba...   237    4e-61
gi|289443284|ref|ZP_06433028.1|  conserved hypothetical protein [...   232    2e-59
gi|167967395|ref|ZP_02549672.1|  hypothetical protein MtubH3_0489...   205    1e-51
gi|254231992|ref|ZP_04925319.1|  conserved hypothetical protein [...   202    1e-50
gi|41407621|ref|NP_960457.1|  hypothetical protein MAP1523 [Mycob...   125    2e-27
gi|254775379|ref|ZP_05216895.1|  hypothetical protein MaviaA2_120...   117    6e-25
gi|15841274|ref|NP_336311.1|  hypothetical protein MT1854 [Mycoba...   112    3e-23
gi|118465508|ref|YP_882090.1|  hypothetical protein MAV_2904 [Myc...   111    3e-23
gi|289554423|ref|ZP_06443633.1|  conserved hypothetical protein [...   110    8e-23
gi|15608941|ref|NP_216320.1|  hypothetical protein Rv1804c [Mycob...   110    9e-23
gi|340626814|ref|YP_004745266.1|  hypothetical protein MCAN_18201...   109    1e-22
gi|167967401|ref|ZP_02549678.1|  hypothetical protein MtubH3_0492...   107    5e-22
gi|254823256|ref|ZP_05228257.1|  hypothetical protein MintA_25224...   106    1e-21
gi|183982693|ref|YP_001850984.1|  hypothetical protein MMAR_2686 ...   100    8e-20
gi|240173096|ref|ZP_04751754.1|  hypothetical protein MkanA1_2753...  95.5    2e-18
gi|254776404|ref|ZP_05217920.1|  hypothetical protein MaviaA2_172...  95.1    3e-18
gi|118466879|ref|YP_882536.1|  hypothetical protein MAV_3354 [Myc...  94.7    4e-18
gi|41407252|ref|NP_960088.1|  hypothetical protein MAP1154 [Mycob...  94.7    4e-18
gi|254823283|ref|ZP_05228284.1|  hypothetical protein MintA_25369...  94.4    5e-18
gi|296164795|ref|ZP_06847355.1|  conserved hypothetical protein [...  92.8    2e-17
gi|240169301|ref|ZP_04747960.1|  hypothetical protein MkanA1_0830...  92.4    2e-17
gi|254823260|ref|ZP_05228261.1|  hypothetical protein MintA_25244...  89.0    2e-16
gi|254775796|ref|ZP_05217312.1|  hypothetical protein MaviaA2_141...  89.0    2e-16
gi|254823259|ref|ZP_05228260.1|  hypothetical protein MintA_25239...  85.9    2e-15
gi|336459289|gb|EGO38233.1|  Protein of unknown function (DUF732)...  83.6    1e-14
gi|41409256|ref|NP_962092.1|  hypothetical protein MAP3158c [Myco...  83.2    1e-14
gi|342861290|ref|ZP_08717938.1|  hypothetical protein MCOL_20501 ...  81.6    3e-14
gi|254821156|ref|ZP_05226157.1|  hypothetical protein MintA_14562...  81.3    4e-14
gi|41408883|ref|NP_961719.1|  hypothetical protein MAP2785c [Myco...  81.3    4e-14
gi|41407615|ref|NP_960451.1|  hypothetical protein MAP1517 [Mycob...  80.5    8e-14
gi|342858464|ref|ZP_08715119.1|  hypothetical protein MCOL_06301 ...  80.5    9e-14
gi|336457566|gb|EGO36571.1|  Protein of unknown function (DUF732)...  80.1    9e-14
gi|118465355|ref|YP_882735.1|  hypothetical protein MAV_3557 [Myc...  80.1    9e-14
gi|118467287|ref|YP_882098.1|  hypothetical protein MAV_2912 [Myc...  80.1    9e-14
gi|333989644|ref|YP_004522258.1|  hypothetical protein JDM601_100...  80.1    1e-13
gi|342861294|ref|ZP_08717942.1|  hypothetical protein MCOL_20521 ...  80.1    1e-13
gi|254775999|ref|ZP_05217515.1|  hypothetical protein MaviaA2_152...  79.7    1e-13
gi|254818542|ref|ZP_05223543.1|  hypothetical protein MintA_01391...  79.3    2e-13
gi|240169738|ref|ZP_04748397.1|  hypothetical protein MkanA1_1052...  79.3    2e-13
gi|342861289|ref|ZP_08717937.1|  hypothetical protein MCOL_20496 ...  78.6    3e-13
gi|342860982|ref|ZP_08717631.1|  hypothetical protein MCOL_18962 ...  78.6    3e-13
gi|118618631|ref|YP_906963.1|  hypothetical protein MUL_3300 [Myc...  77.8    6e-13
gi|118463814|ref|YP_882093.1|  hypothetical protein MAV_2907 [Myc...  77.0    9e-13
gi|333989793|ref|YP_004522407.1|  hypothetical protein JDM601_115...  75.9    2e-12
gi|118618176|ref|YP_906508.1|  hypothetical protein MUL_2724 [Myc...  75.9    2e-12
gi|183983439|ref|YP_001851730.1|  hypothetical protein MMAR_3450 ...  75.1    3e-12
gi|333991945|ref|YP_004524559.1|  hypothetical protein JDM601_330...  74.3    6e-12
gi|296169238|ref|ZP_06850891.1|  conserved hypothetical protein [...  73.9    8e-12
gi|118466065|ref|YP_882736.1|  hypothetical protein MAV_3558 [Myc...  72.4    2e-11


>gi|15841280|ref|NP_336317.1| hypothetical protein MT1858 [Mycobacterium tuberculosis CDC1551]
 gi|13881509|gb|AAK46131.1| hypothetical protein MT1858 [Mycobacterium tuberculosis CDC1551]
Length=135

 Score =  237 bits (605),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 118/118 (100%), Positives = 118/118 (100%), Gaps = 0/118 (0%)

Query  1    MQLQRTMGQCRPMRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGH  60
            MQLQRTMGQCRPMRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGH
Sbjct  18   MQLQRTMGQCRPMRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGH  77

Query  61   AITAAKAMCGLCANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEHHPS  118
            AITAAKAMCGLCANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEHHPS
Sbjct  78   AITAAKAMCGLCANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEHHPS  135


>gi|15608947|ref|NP_216326.1| hypothetical protein Rv1810 [Mycobacterium tuberculosis H37Rv]
 gi|31792999|ref|NP_855492.1| hypothetical protein Mb1840 [Mycobacterium bovis AF2122/97]
 gi|121637712|ref|YP_977935.1| hypothetical protein BCG_1844 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 39 more sequence titles
 gi|148661616|ref|YP_001283139.1| hypothetical protein MRA_1822 [Mycobacterium tuberculosis H37Ra]
 gi|148823023|ref|YP_001287777.1| hypothetical protein TBFG_11840 [Mycobacterium tuberculosis F11]
 gi|224990196|ref|YP_002644883.1| hypothetical protein JTY_1828 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253799146|ref|YP_003032147.1| hypothetical protein TBMG_02184 [Mycobacterium tuberculosis KZN 
1435]
 gi|254364638|ref|ZP_04980684.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289447424|ref|ZP_06437168.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289554416|ref|ZP_06443626.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289574487|ref|ZP_06454714.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289745758|ref|ZP_06505136.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289757913|ref|ZP_06517291.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289761960|ref|ZP_06521338.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|294996721|ref|ZP_06802412.1| hypothetical protein Mtub2_19993 [Mycobacterium tuberculosis 
210]
 gi|297634370|ref|ZP_06952150.1| hypothetical protein MtubK4_09626 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297731357|ref|ZP_06960475.1| hypothetical protein MtubKR_09726 [Mycobacterium tuberculosis 
KZN R506]
 gi|298525305|ref|ZP_07012714.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|313658691|ref|ZP_07815571.1| hypothetical protein MtubKV_09741 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339631863|ref|YP_004723505.1| hypothetical protein MAF_18320 [Mycobacterium africanum GM041182]
 gi|340626819|ref|YP_004745271.1| hypothetical protein MCAN_18261 [Mycobacterium canettii CIPT 
140010059]
 gi|3242258|emb|CAB09502.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|31618590|emb|CAD94543.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493359|emb|CAL71831.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|134150152|gb|EBA42197.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148505768|gb|ABQ73577.1| hypothetical protein MRA_1822 [Mycobacterium tuberculosis H37Ra]
 gi|148721550|gb|ABR06175.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224773309|dbj|BAH26115.1| hypothetical protein JTY_1828 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253320649|gb|ACT25252.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
1435]
 gi|289420382|gb|EFD17583.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289439048|gb|EFD21541.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289538918|gb|EFD43496.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289686286|gb|EFD53774.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289709466|gb|EFD73482.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289713477|gb|EFD77489.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298495099|gb|EFI30393.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|326903414|gb|EGE50347.1| hypothetical protein TBPG_01286 [Mycobacterium tuberculosis W-148]
 gi|328458901|gb|AEB04324.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
 gi|339331219|emb|CCC26902.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
 gi|340005009|emb|CCC44158.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
 gi|341601739|emb|CCC64413.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344219632|gb|AEN00263.1| hypothetical protein MTCTRI2_1842 [Mycobacterium tuberculosis 
CTRI-2]
Length=118

 Score =  237 bits (605),  Expect = 4e-61, Method: Compositional matrix adjust.
 Identities = 118/118 (100%), Positives = 118/118 (100%), Gaps = 0/118 (0%)

Query  1    MQLQRTMGQCRPMRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGH  60
            MQLQRTMGQCRPMRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGH
Sbjct  1    MQLQRTMGQCRPMRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGH  60

Query  61   AITAAKAMCGLCANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEHHPS  118
            AITAAKAMCGLCANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEHHPS
Sbjct  61   AITAAKAMCGLCANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEHHPS  118


>gi|289443284|ref|ZP_06433028.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289569882|ref|ZP_06450109.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289750383|ref|ZP_06509761.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289753905|ref|ZP_06513283.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289416203|gb|EFD13443.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289543636|gb|EFD47284.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289690970|gb|EFD58399.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289694492|gb|EFD61921.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=122

 Score =  232 bits (591),  Expect = 2e-59, Method: Compositional matrix adjust.
 Identities = 118/122 (97%), Positives = 118/122 (97%), Gaps = 4/122 (3%)

Query  1    MQLQRTMGQCRPM----RMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYA  56
            MQLQRTMGQCRPM    RMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYA
Sbjct  1    MQLQRTMGQCRPMSRPMRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYA  60

Query  57   DPGHAITAAKAMCGLCANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEHH  116
            DPGHAITAAKAMCGLCANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEHH
Sbjct  61   DPGHAITAAKAMCGLCANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEHH  120

Query  117  PS  118
            PS
Sbjct  121  PS  122


>gi|167967395|ref|ZP_02549672.1| hypothetical protein MtubH3_04897 [Mycobacterium tuberculosis 
H37Ra]
 gi|254550818|ref|ZP_05141265.1| hypothetical protein Mtube_10226 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|308231946|ref|ZP_07414364.2| hypothetical protein TMAG_01985 [Mycobacterium tuberculosis SUMu001]
 26 more sequence titles
 gi|308369530|ref|ZP_07418148.2| hypothetical protein TMBG_00341 [Mycobacterium tuberculosis SUMu002]
 gi|308370828|ref|ZP_07422873.2| hypothetical protein TMCG_02846 [Mycobacterium tuberculosis SUMu003]
 gi|308372059|ref|ZP_07427235.2| hypothetical protein TMDG_03059 [Mycobacterium tuberculosis SUMu004]
 gi|308373242|ref|ZP_07431551.2| hypothetical protein TMEG_01699 [Mycobacterium tuberculosis SUMu005]
 gi|308374405|ref|ZP_07435930.2| hypothetical protein TMFG_00888 [Mycobacterium tuberculosis SUMu006]
 gi|308375685|ref|ZP_07444757.2| hypothetical protein TMGG_00350 [Mycobacterium tuberculosis SUMu007]
 gi|308376830|ref|ZP_07440181.2| hypothetical protein TMHG_00981 [Mycobacterium tuberculosis SUMu008]
 gi|308377830|ref|ZP_07480564.2| hypothetical protein TMIG_02050 [Mycobacterium tuberculosis SUMu009]
 gi|308379039|ref|ZP_07484798.2| hypothetical protein TMJG_00054 [Mycobacterium tuberculosis SUMu010]
 gi|308380193|ref|ZP_07489017.2| hypothetical protein TMKG_00058 [Mycobacterium tuberculosis SUMu011]
 gi|308402285|ref|ZP_07493539.2| hypothetical protein TMLG_01081 [Mycobacterium tuberculosis SUMu012]
 gi|308215521|gb|EFO74920.1| hypothetical protein TMAG_01985 [Mycobacterium tuberculosis SUMu001]
 gi|308327271|gb|EFP16122.1| hypothetical protein TMBG_00341 [Mycobacterium tuberculosis SUMu002]
 gi|308330711|gb|EFP19562.1| hypothetical protein TMCG_02846 [Mycobacterium tuberculosis SUMu003]
 gi|308334536|gb|EFP23387.1| hypothetical protein TMDG_03059 [Mycobacterium tuberculosis SUMu004]
 gi|308338362|gb|EFP27213.1| hypothetical protein TMEG_01699 [Mycobacterium tuberculosis SUMu005]
 gi|308342041|gb|EFP30892.1| hypothetical protein TMFG_00888 [Mycobacterium tuberculosis SUMu006]
 gi|308345553|gb|EFP34404.1| hypothetical protein TMGG_00350 [Mycobacterium tuberculosis SUMu007]
 gi|308349835|gb|EFP38686.1| hypothetical protein TMHG_00981 [Mycobacterium tuberculosis SUMu008]
 gi|308354493|gb|EFP43344.1| hypothetical protein TMIG_02050 [Mycobacterium tuberculosis SUMu009]
 gi|308358397|gb|EFP47248.1| hypothetical protein TMJG_00054 [Mycobacterium tuberculosis SUMu010]
 gi|308362333|gb|EFP51184.1| hypothetical protein TMKG_00058 [Mycobacterium tuberculosis SUMu011]
 gi|308365970|gb|EFP54821.1| hypothetical protein TMLG_01081 [Mycobacterium tuberculosis SUMu012]
 gi|323719687|gb|EGB28808.1| hypothetical protein TMMG_01067 [Mycobacterium tuberculosis CDC1551A]
 gi|339294746|gb|AEJ46857.1| hypothetical protein CCDC5079_1667 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339298374|gb|AEJ50484.1| hypothetical protein CCDC5180_1647 [Mycobacterium tuberculosis 
CCDC5180]
Length=104

 Score =  205 bits (522),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 104/104 (100%), Positives = 104/104 (100%), Gaps = 0/104 (0%)

Query  15   MLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCAN  74
            MLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCAN
Sbjct  1    MLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCAN  60

Query  75   GVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEHHPS  118
            GVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEHHPS
Sbjct  61   GVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEHHPS  104


>gi|254231992|ref|ZP_04925319.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|124601051|gb|EAY60061.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=104

 Score =  202 bits (515),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 103/104 (99%), Positives = 103/104 (99%), Gaps = 0/104 (0%)

Query  15   MLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCAN  74
            MLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCAN
Sbjct  1    MLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCAN  60

Query  75   GVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEHHPS  118
            GVTGLQLVADLRDYNPGLTM SAAKFAAIASGAYCPEHLEHHPS
Sbjct  61   GVTGLQLVADLRDYNPGLTMHSAAKFAAIASGAYCPEHLEHHPS  104


>gi|41407621|ref|NP_960457.1| hypothetical protein MAP1523 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395974|gb|AAS03840.1| hypothetical protein MAP_1523 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336457573|gb|EGO36578.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=106

 Score =  125 bits (314),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 60/101 (60%), Positives = 77/101 (77%), Gaps = 0/101 (0%)

Query  13   MRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLC  72
            M+ ++ALL   A  +G  AP +A+P GDDAAFLA+LDQ+GITY+ P   I +AKA+CGL 
Sbjct  1    MKRVLALLGIGAAALGYTAPARAEPQGDDAAFLASLDQSGITYSSPVQVIASAKAVCGLM  60

Query  73   ANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
              G TGLQ+V D++D NPG+TMD AA+FAA+AS AYCP HL
Sbjct  61   GRGETGLQVVTDIKDQNPGMTMDGAAQFAALASNAYCPHHL  101


>gi|254775379|ref|ZP_05216895.1| hypothetical protein MaviaA2_12021 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=106

 Score =  117 bits (293),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 61/101 (61%), Positives = 78/101 (78%), Gaps = 0/101 (0%)

Query  13   MRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLC  72
            M+ ++ALL   A  +G AAP +A+P GDDAAFLA+LDQ+GITY+ P   I +AKA+CGL 
Sbjct  1    MKRVLALLGIGAAALGYAAPARAEPQGDDAAFLASLDQSGITYSSPVQVIASAKAVCGLM  60

Query  73   ANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
              G TGLQ+V D++D NPG+TMD AA+FAA+AS AYCP HL
Sbjct  61   GRGETGLQVVTDIKDQNPGMTMDGAAQFAALASNAYCPHHL  101


>gi|15841274|ref|NP_336311.1| hypothetical protein MT1854 [Mycobacterium tuberculosis CDC1551]
 gi|13881502|gb|AAK46125.1| hypothetical protein MT1854 [Mycobacterium tuberculosis CDC1551]
Length=122

 Score =  112 bits (279),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 55/106 (52%), Positives = 73/106 (69%), Gaps = 1/106 (0%)

Query  8    GQCRPMRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKA  67
            G+   MR +V+ LLS   MIGLA P  A P+GDDA FLA+L++AGITY+ P  AI + KA
Sbjct  10   GESLSMR-VVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKA  68

Query  68   MCGLCANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
            +C L  +G +GLQ+V +LR  NPG +MD   KFAAI++  YCP  +
Sbjct  69   VCALVESGESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI  114


>gi|118465508|ref|YP_882090.1| hypothetical protein MAV_2904 [Mycobacterium avium 104]
 gi|118166795|gb|ABK67692.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=103

 Score =  111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 59/98 (61%), Positives = 75/98 (77%), Gaps = 0/98 (0%)

Query  16   LVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANG  75
            ++ALL   A  +G AAP +A+P GDDAAFLA+LDQ+GITY+     I +AKA+CGL   G
Sbjct  1    MLALLGIGAAALGYAAPARAEPQGDDAAFLASLDQSGITYSSSVQVIASAKAVCGLMGRG  60

Query  76   VTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
             TGLQ+V D++D NPG+TMD AA+FAA+AS AYCP HL
Sbjct  61   ETGLQVVTDIKDQNPGMTMDGAAQFAALASNAYCPHHL  98


>gi|289554423|ref|ZP_06443633.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289439055|gb|EFD21548.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
Length=110

 Score =  110 bits (274),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 52/98 (54%), Positives = 69/98 (71%), Gaps = 0/98 (0%)

Query  16   LVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANG  75
            +V+ LLS   MIGLA P  A P+GDDA FLA+L++AGITY+ P  AI + KA+C L  +G
Sbjct  5    VVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESG  64

Query  76   VTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
             +GLQ+V +LR  NPG +MD   KFAAI++  YCP  +
Sbjct  65   ESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI  102


>gi|15608941|ref|NP_216320.1| hypothetical protein Rv1804c [Mycobacterium tuberculosis H37Rv]
 gi|31792993|ref|NP_855486.1| hypothetical protein Mb1833c [Mycobacterium bovis AF2122/97]
 gi|121637706|ref|YP_977929.1| hypothetical protein BCG_1837c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 59 more sequence titles
 gi|148661610|ref|YP_001283133.1| hypothetical protein MRA_1817 [Mycobacterium tuberculosis H37Ra]
 gi|148823018|ref|YP_001287772.1| hypothetical protein TBFG_11835 [Mycobacterium tuberculosis F11]
 gi|224990190|ref|YP_002644877.1| hypothetical protein JTY_1821 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253799154|ref|YP_003032155.1| hypothetical protein TBMG_02192 [Mycobacterium tuberculosis KZN 
1435]
 gi|254231988|ref|ZP_04925315.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254364634|ref|ZP_04980680.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289443278|ref|ZP_06433022.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289447419|ref|ZP_06437163.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289569876|ref|ZP_06450103.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289574482|ref|ZP_06454709.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289745764|ref|ZP_06505142.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289750375|ref|ZP_06509753.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289753899|ref|ZP_06513277.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289757907|ref|ZP_06517285.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289761954|ref|ZP_06521332.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|294996716|ref|ZP_06802407.1| hypothetical protein Mtub2_19968 [Mycobacterium tuberculosis 
210]
 gi|297634363|ref|ZP_06952143.1| hypothetical protein MtubK4_09591 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297731350|ref|ZP_06960468.1| hypothetical protein MtubKR_09691 [Mycobacterium tuberculosis 
KZN R506]
 gi|306776022|ref|ZP_07414359.1| hypothetical protein TMAG_01980 [Mycobacterium tuberculosis SUMu001]
 gi|306779806|ref|ZP_07418143.1| hypothetical protein TMBG_00336 [Mycobacterium tuberculosis SUMu002]
 gi|306788907|ref|ZP_07427229.1| hypothetical protein TMDG_03054 [Mycobacterium tuberculosis SUMu004]
 gi|306967898|ref|ZP_07480559.1| hypothetical protein TMIG_02045 [Mycobacterium tuberculosis SUMu009]
 gi|306972132|ref|ZP_07484793.1| hypothetical protein TMJG_00049 [Mycobacterium tuberculosis SUMu010]
 gi|307079842|ref|ZP_07489012.1| hypothetical protein TMKG_00053 [Mycobacterium tuberculosis SUMu011]
 gi|307084420|ref|ZP_07493533.1| hypothetical protein TMLG_01075 [Mycobacterium tuberculosis SUMu012]
 gi|313658684|ref|ZP_07815564.1| hypothetical protein MtubKV_09706 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339631857|ref|YP_004723499.1| hypothetical protein MAF_18260 [Mycobacterium africanum GM041182]
 gi|2924485|emb|CAA17725.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|31618584|emb|CAD94536.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493353|emb|CAL71824.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|124601047|gb|EAY60057.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134150148|gb|EBA42193.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148505762|gb|ABQ73571.1| hypothetical protein MRA_1817 [Mycobacterium tuberculosis H37Ra]
 gi|148721545|gb|ABR06170.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224773303|dbj|BAH26109.1| hypothetical protein JTY_1821 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253320657|gb|ACT25260.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
1435]
 gi|289416197|gb|EFD13437.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289420377|gb|EFD17578.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289538913|gb|EFD43491.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289543630|gb|EFD47278.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289686292|gb|EFD53780.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289690962|gb|EFD58391.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289694486|gb|EFD61915.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289709460|gb|EFD73476.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289713471|gb|EFD77483.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|308215516|gb|EFO74915.1| hypothetical protein TMAG_01980 [Mycobacterium tuberculosis SUMu001]
 gi|308327266|gb|EFP16117.1| hypothetical protein TMBG_00336 [Mycobacterium tuberculosis SUMu002]
 gi|308334574|gb|EFP23425.1| hypothetical protein TMDG_03054 [Mycobacterium tuberculosis SUMu004]
 gi|308354488|gb|EFP43339.1| hypothetical protein TMIG_02045 [Mycobacterium tuberculosis SUMu009]
 gi|308358392|gb|EFP47243.1| hypothetical protein TMJG_00049 [Mycobacterium tuberculosis SUMu010]
 gi|308362328|gb|EFP51179.1| hypothetical protein TMKG_00053 [Mycobacterium tuberculosis SUMu011]
 gi|308365980|gb|EFP54831.1| hypothetical protein TMLG_01075 [Mycobacterium tuberculosis SUMu012]
 gi|326903408|gb|EGE50341.1| hypothetical protein TBPG_01280 [Mycobacterium tuberculosis W-148]
 gi|328458909|gb|AEB04332.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
 gi|339294742|gb|AEJ46853.1| hypothetical protein CCDC5079_1663 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339298370|gb|AEJ50480.1| hypothetical protein CCDC5180_1643 [Mycobacterium tuberculosis 
CCDC5180]
 gi|339331213|emb|CCC26896.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
 gi|341601733|emb|CCC64406.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344219626|gb|AEN00257.1| hypothetical protein MTCTRI2_1836 [Mycobacterium tuberculosis 
CTRI-2]
Length=108

 Score =  110 bits (274),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 52/98 (54%), Positives = 69/98 (71%), Gaps = 0/98 (0%)

Query  16   LVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANG  75
            +V+ LLS   MIGLA P  A P+GDDA FLA+L++AGITY+ P  AI + KA+C L  +G
Sbjct  3    VVSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESG  62

Query  76   VTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
             +GLQ+V +LR  NPG +MD   KFAAI++  YCP  +
Sbjct  63   ESGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI  100


>gi|340626814|ref|YP_004745266.1| hypothetical protein MCAN_18201 [Mycobacterium canettii CIPT 
140010059]
 gi|340005004|emb|CCC44152.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=108

 Score =  109 bits (272),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 52/97 (54%), Positives = 68/97 (71%), Gaps = 0/97 (0%)

Query  17   VALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGV  76
            V+ LLS   MIGLA P  A P+GDDA FLA+L++AGITY+ P  AI + KA+C L  +G 
Sbjct  4    VSTLLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGE  63

Query  77   TGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
            +GLQ+V +LR  NPG +MD   KFAAI++  YCP  +
Sbjct  64   SGLQVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI  100


>gi|167967401|ref|ZP_02549678.1| hypothetical protein MtubH3_04927 [Mycobacterium tuberculosis 
H37Ra]
 gi|254550813|ref|ZP_05141260.1| hypothetical protein Mtube_10201 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|298525300|ref|ZP_07012709.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 12 more sequence titles
 gi|308370827|ref|ZP_07422868.2| hypothetical protein TMCG_02841 [Mycobacterium tuberculosis SUMu003]
 gi|308373241|ref|ZP_07431546.2| hypothetical protein TMEG_01694 [Mycobacterium tuberculosis SUMu005]
 gi|308374404|ref|ZP_07435925.2| hypothetical protein TMFG_00883 [Mycobacterium tuberculosis SUMu006]
 gi|308375684|ref|ZP_07444752.2| hypothetical protein TMGG_00345 [Mycobacterium tuberculosis SUMu007]
 gi|308376828|ref|ZP_07440176.2| hypothetical protein TMHG_00976 [Mycobacterium tuberculosis SUMu008]
 gi|298495094|gb|EFI30388.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308330706|gb|EFP19557.1| hypothetical protein TMCG_02841 [Mycobacterium tuberculosis SUMu003]
 gi|308338357|gb|EFP27208.1| hypothetical protein TMEG_01694 [Mycobacterium tuberculosis SUMu005]
 gi|308342036|gb|EFP30887.1| hypothetical protein TMFG_00883 [Mycobacterium tuberculosis SUMu006]
 gi|308345548|gb|EFP34399.1| hypothetical protein TMGG_00345 [Mycobacterium tuberculosis SUMu007]
 gi|308349830|gb|EFP38681.1| hypothetical protein TMHG_00976 [Mycobacterium tuberculosis SUMu008]
 gi|323719682|gb|EGB28803.1| hypothetical protein TMMG_01062 [Mycobacterium tuberculosis CDC1551A]
Length=105

 Score =  107 bits (268),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 51/94 (55%), Positives = 66/94 (71%), Gaps = 0/94 (0%)

Query  20   LLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGL  79
            LLS   MIGLA P  A P+GDDA FLA+L++AGITY+ P  AI + KA+C L  +G +GL
Sbjct  4    LLSIPLMIGLAVPAHAGPSGDDAVFLASLERAGITYSHPDQAIASGKAVCALVESGESGL  63

Query  80   QLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
            Q+V +LR  NPG +MD   KFAAI++  YCP  +
Sbjct  64   QVVNELRTRNPGFSMDGCCKFAAISAHVYCPHQI  97


>gi|254823256|ref|ZP_05228257.1| hypothetical protein MintA_25224 [Mycobacterium intracellulare 
ATCC 13950]
Length=105

 Score =  106 bits (265),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 60/96 (63%), Positives = 74/96 (78%), Gaps = 0/96 (0%)

Query  18   ALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGVT  77
            A LL A  +IG AAP  A+P GDDAAFLA LD +GITY+     IT+AKA+CGL   G T
Sbjct  5    AALLGAVGVIGFAAPAHAEPEGDDAAFLANLDNSGITYSSSSQVITSAKAVCGLMGRGET  64

Query  78   GLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
            GLQ+V+D++D NPG+TMD+AAKFAA+AS AYCP H+
Sbjct  65   GLQVVSDIKDQNPGMTMDAAAKFAALASSAYCPHHI  100


>gi|183982693|ref|YP_001850984.1| hypothetical protein MMAR_2686 [Mycobacterium marinum M]
 gi|183176019|gb|ACC41129.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=106

 Score =  100 bits (249),  Expect = 8e-20, Method: Compositional matrix adjust.
 Identities = 56/107 (53%), Positives = 72/107 (68%), Gaps = 6/107 (5%)

Query  13   MRMLVALL-LSAATMIGLAAPGKADPT---GDDAAFLAALDQAGITYADPGHAITAAKAM  68
            M+ L ALL LSA  MI LAAP  A P    GDD  FLAAL  AGITY++P  AI +AKA+
Sbjct  1    MKTLFALLGLSA--MIWLAAPAHAHPDEGGGDDVGFLAALQNAGITYSNPDQAIGSAKAV  58

Query  69   CGLCANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEH  115
            C     G +GL+LV D++ +NPG  M++A++FA +A+  YCP HL H
Sbjct  59   CWCLDGGESGLELVHDVKTHNPGFNMEAASQFAVLAATYYCPHHLSH  105


>gi|240173096|ref|ZP_04751754.1| hypothetical protein MkanA1_27536 [Mycobacterium kansasii ATCC 
12478]
Length=110

 Score = 95.5 bits (236),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 49/92 (54%), Positives = 63/92 (69%), Gaps = 4/92 (4%)

Query  28   GLAAPGKADPTG----DDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGLQLVA  83
            GLAAP  ADP G    DDA FLAAL QAGITY  P  AI +A+A+CG   NG  GL++V 
Sbjct  18   GLAAPAHADPQGPSGGDDAGFLAALQQAGITYPSPAAAIGSAQAVCGCLDNGEAGLEVVH  77

Query  84   DLRDYNPGLTMDSAAKFAAIASGAYCPEHLEH  115
            +++  NPG  M++A++FA I++  YCP HL H
Sbjct  78   EVKVRNPGFNMEAASQFAVISAKYYCPHHLGH  109


>gi|254776404|ref|ZP_05217920.1| hypothetical protein MaviaA2_17294 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=108

 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 49/101 (49%), Positives = 66/101 (66%), Gaps = 3/101 (2%)

Query  16   LVALLLSAATMIGLAAPGKADP---TGDDAAFLAALDQAGITYADPGHAITAAKAMCGLC  72
            ++ALL   A + G+AAP  ADP   TG DA+FLAAL+QAGITY +P  AI   K  C L 
Sbjct  1    MLALLAGFAVLAGMAAPAHADPAGTTGSDASFLAALNQAGITYQNPATAIEVGKRACELM  60

Query  73   ANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
              G   ++++ ++   NPG T+D AA+F  IA+ AYCP+HL
Sbjct  61   DQGSPQVEVIKNVSSSNPGFTVDGAAQFTMIAASAYCPQHL  101


>gi|118466879|ref|YP_882536.1| hypothetical protein MAV_3354 [Mycobacterium avium 104]
 gi|118168166|gb|ABK69063.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=117

 Score = 94.7 bits (234),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 45/87 (52%), Positives = 61/87 (71%), Gaps = 2/87 (2%)

Query  30   AAPGKADPTGDD--AAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGLQLVADLRD  87
            A PG+ +   DD    F+A L + GI++ DPG A++A KA+CGL A GV+GLQL+ DLRD
Sbjct  22   AVPGEDEAAADDNNEVFIADLHKVGISFQDPGQAVSAGKAVCGLLARGVSGLQLLNDLRD  81

Query  88   YNPGLTMDSAAKFAAIASGAYCPEHLE  114
             NP LT + AA+FA I++ +YCP  LE
Sbjct  82   NNPALTTNGAAQFATISAKSYCPRQLE  108


>gi|41407252|ref|NP_960088.1| hypothetical protein MAP1154 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395604|gb|AAS03471.1| hypothetical protein MAP_1154 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=117

 Score = 94.7 bits (234),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 45/87 (52%), Positives = 61/87 (71%), Gaps = 2/87 (2%)

Query  30   AAPGKADPTGDD--AAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGLQLVADLRD  87
            A PG+ +   DD    F+A L + GI++ DPG A++A KA+CGL A GV+GLQL+ DLRD
Sbjct  22   AVPGEDEAATDDNNEVFIADLHKVGISFQDPGQAVSAGKAVCGLLARGVSGLQLLNDLRD  81

Query  88   YNPGLTMDSAAKFAAIASGAYCPEHLE  114
             NP LT + AA+FA I++ +YCP  LE
Sbjct  82   NNPALTTNGAAQFATISAKSYCPRQLE  108


>gi|254823283|ref|ZP_05228284.1| hypothetical protein MintA_25369 [Mycobacterium intracellulare 
ATCC 13950]
Length=116

 Score = 94.4 bits (233),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 51/110 (47%), Positives = 70/110 (64%), Gaps = 8/110 (7%)

Query  13   MRMLVALLLSAATMIGLAAPGKADPTGDDA-------AFLAALDQAGITYADPGHAITAA  65
            M  L+ALL + +  I LAAP  A P  D+A       +FL+ L   GI++ DPG A+ A 
Sbjct  1    MTRLLALL-TVSLGITLAAPAHATPGEDEAPADDNNGSFLSDLHTVGISFKDPGQAVAAG  59

Query  66   KAMCGLCANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEH  115
            K++CG+   GV+GLQL+ D+RD NP LT + AA+FA I++ AYCP  LE 
Sbjct  60   KSVCGMITRGVSGLQLLTDIRDNNPALTTNGAAQFATISAKAYCPGQLEE  109


>gi|296164795|ref|ZP_06847355.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899849|gb|EFG79295.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=105

 Score = 92.8 bits (229),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 67/104 (65%), Gaps = 3/104 (2%)

Query  13   MRMLVALLLSAATMIGLAAPGKADPTG--DDAAFLAALDQAGITYADPGHAITAAKAMCG  70
            MR+LVA++     +IGLAAP   DP G  D+A+FLA+L  AGITY  P  A+  AKA+C 
Sbjct  1    MRLLVAVI-GVWAVIGLAAPAHGDPDGGVDEASFLASLRSAGITYKTPDAAVQFAKAVCE  59

Query  71   LCANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLE  114
               NG  G Q+V++L+  NPGLT D A  F AIA+  YCP+ L 
Sbjct  60   SMGNGEYGPQMVSELQAQNPGLTADHATSFLAIAAKFYCPQKLN  103


>gi|240169301|ref|ZP_04747960.1| hypothetical protein MkanA1_08306 [Mycobacterium kansasii ATCC 
12478]
Length=102

 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 50/99 (51%), Positives = 65/99 (66%), Gaps = 4/99 (4%)

Query  19   LLLSAATMIGLAAPGKADPTGD----DAAFLAALDQAGITYADPGHAITAAKAMCGLCAN  74
            LLLSA T IG+AAP  AD   D    D  FL AL  AGITY++PGHA+ +A AMC    +
Sbjct  3    LLLSAFTTIGIAAPALADAGVDLGARDVGFLGALQDAGITYSNPGHAVESAHAMCRNLHH  62

Query  75   GVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
            G +GLQ V  ++  NP + +D+A++FA IA+  YCPE L
Sbjct  63   GESGLQAVQQVKIQNPPIDLDTASRFAVIAAKYYCPEQL  101


>gi|254823260|ref|ZP_05228261.1| hypothetical protein MintA_25244 [Mycobacterium intracellulare 
ATCC 13950]
Length=107

 Score = 89.0 bits (219),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 4/100 (4%)

Query  20   LLSAATMIGLAAPGKADPT----GDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANG  75
            LLSA   IGLAAP  ADP      DD  F+AAL QAG ++A PG A+ A +A+C    NG
Sbjct  7    LLSAFATIGLAAPAHADPGPEPGADDGGFIAALRQAGFSFATPGSAVAAGRAVCSCLDNG  66

Query  76   VTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEH  115
              GL++V D++  NPG+ M+ A+ FA +++  YCP  L  
Sbjct  67   EPGLEVVHDVKTRNPGMDMEMASNFAVLSAKFYCPNQLSK  106


>gi|254775796|ref|ZP_05217312.1| hypothetical protein MaviaA2_14160 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=115

 Score = 89.0 bits (219),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 45/87 (52%), Positives = 59/87 (68%), Gaps = 4/87 (4%)

Query  30   AAPGKADPTGDD--AAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGLQLVADLRD  87
            A PG+ +   DD    F+A L + GI++ DPG A++A KA+CGL A GV+GLQL+ DLRD
Sbjct  22   AVPGEDEAAADDNNEVFIADLHKVGISFQDPGQAVSAGKAVCGLLARGVSGLQLLNDLRD  81

Query  88   YNPGLTMDSAAKFAAIASGAYCPEHLE  114
             NP LT + AA+FA+  S  YCP  LE
Sbjct  82   NNPALTTNGAAQFASAKS--YCPRQLE  106


>gi|254823259|ref|ZP_05228260.1| hypothetical protein MintA_25239 [Mycobacterium intracellulare 
ATCC 13950]
Length=107

 Score = 85.9 bits (211),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 49/107 (46%), Positives = 65/107 (61%), Gaps = 3/107 (2%)

Query  13   MRMLVALLLSAATMIGLAAPGKADPT---GDDAAFLAALDQAGITYADPGHAITAAKAMC  69
            MR+L AL +  + ++G      +DP    GD+AAFLA+L  AGITY+ P  A+  AKA+C
Sbjct  1    MRLLAALGVGVSVILGPTPLAHSDPGTTGGDEAAFLASLRGAGITYSTPDGAVKFAKAVC  60

Query  70   GLCANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEHH  116
               ANG  G Q+V +L+  NPGLT D A  F AIA+  YCP+ L   
Sbjct  61   VSMANGELGPQMVDELKSQNPGLTDDHATSFLAIAAKFYCPQQLNKR  107


>gi|336459289|gb|EGO38233.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=110

 Score = 83.6 bits (205),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 54/82 (66%), Gaps = 3/82 (3%)

Query  35   ADP---TGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGLQLVADLRDYNPG  91
            ADP   TG DA+FLAAL+QAGITY +P  AI   K  C L   G   ++++ ++   NPG
Sbjct  22   ADPAGTTGSDASFLAALNQAGITYQNPATAIEVGKRACELMDQGSPQVEVIKNVSSSNPG  81

Query  92   LTMDSAAKFAAIASGAYCPEHL  113
             T+D AA+F  IA+ AYCP+HL
Sbjct  82   FTVDGAAQFTMIAASAYCPQHL  103


>gi|41409256|ref|NP_962092.1| hypothetical protein MAP3158c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118465687|ref|YP_883144.1| hypothetical protein MAV_3988 [Mycobacterium avium 104]
 gi|41398076|gb|AAS05706.1| hypothetical protein MAP_3158c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118166974|gb|ABK67871.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=131

 Score = 83.2 bits (204),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 54/82 (66%), Gaps = 3/82 (3%)

Query  35   ADP---TGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGLQLVADLRDYNPG  91
            ADP   TG DA+FLAAL+QAGITY +P  AI   K  C L   G   ++++ ++   NPG
Sbjct  43   ADPAGTTGSDASFLAALNQAGITYQNPATAIEVGKRACELMDQGSPQVEVIKNVSSSNPG  102

Query  92   LTMDSAAKFAAIASGAYCPEHL  113
             T+D AA+F  IA+ AYCP+HL
Sbjct  103  FTVDGAAQFTMIAASAYCPQHL  124


>gi|342861290|ref|ZP_08717938.1| hypothetical protein MCOL_20501 [Mycobacterium colombiense CECT 
3035]
 gi|342131190|gb|EGT84471.1| hypothetical protein MCOL_20501 [Mycobacterium colombiense CECT 
3035]
Length=98

 Score = 81.6 bits (200),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 35/75 (47%), Positives = 53/75 (71%), Gaps = 0/75 (0%)

Query  39   GDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGLQLVADLRDYNPGLTMDSAA  98
            GDD  F+AAL QAG ++++PG A+ A +A+C    NG +GL+LV D++ +NPG+ M+ A+
Sbjct  21   GDDGGFVAALQQAGFSFSNPGSAVAAGRAVCSCLNNGESGLELVHDVKTHNPGMDMEMAS  80

Query  99   KFAAIASGAYCPEHL  113
             FA I++  YCP  L
Sbjct  81   NFALISAKFYCPHQL  95


>gi|254821156|ref|ZP_05226157.1| hypothetical protein MintA_14562 [Mycobacterium intracellulare 
ATCC 13950]
Length=107

 Score = 81.3 bits (199),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 41/98 (42%), Positives = 57/98 (59%), Gaps = 3/98 (3%)

Query  19   LLLSAATMIGLAAPGKADPTGD---DAAFLAALDQAGITYADPGHAITAAKAMCGLCANG  75
            +L      IG+A P  ADP G+   D +FL AL++AGITY  P  A+   K  C L   G
Sbjct  1    MLAGFVVFIGVATPAHADPAGNSAADVSFLTALNKAGITYESPATAVGVGKRACELMDQG  60

Query  76   VTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
               + ++ ++   NPG T+D AA+F  IA+ AYCP+HL
Sbjct  61   HPQVDVIHNVSSSNPGFTVDGAAQFTMIAASAYCPQHL  98


>gi|41408883|ref|NP_961719.1| hypothetical protein MAP2785c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41397242|gb|AAS05102.1| hypothetical protein MAP_2785c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=161

 Score = 81.3 bits (199),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 46/101 (46%), Positives = 63/101 (63%), Gaps = 2/101 (1%)

Query  13   MRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLC  72
            MR+ + L   AAT IGLAAP  AD   +D  FL  L  AGITY D G+AIT  K++C L 
Sbjct  48   MRLFLGLCALAAT-IGLAAPAHAD-IDNDQDFLKDLRDAGITYQDAGNAITIGKSVCELL  105

Query  73   ANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
             +G +  ++V DLR+ NP     SAAKF  +++  YCP+++
Sbjct  106  DDGQSDAKIVTDLRNQNPAFQGASAAKFTYLSAAHYCPKYI  146


>gi|41407615|ref|NP_960451.1| hypothetical protein MAP1517 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395968|gb|AAS03834.1| hypothetical protein MAP_1517 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=118

 Score = 80.5 bits (197),  Expect = 8e-14, Method: Compositional matrix adjust.
 Identities = 41/88 (47%), Positives = 55/88 (63%), Gaps = 2/88 (2%)

Query  27   IGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGLQLVADLR  86
            +G+A P  AD   DD AFLAAL++AGITY DP  AI A + +C L  +G T L ++ D+ 
Sbjct  21   VGMAIPAHAD--SDDDAFLAALNKAGITYPDPTRAIRAGQKVCDLAGSGTTELDIIRDVH  78

Query  87   DYNPGLTMDSAAKFAAIASGAYCPEHLE  114
            + NP  +   AA F   A+GAYCP+ L 
Sbjct  79   ELNPAFSTAKAALFVQAAAGAYCPDRLS  106


>gi|342858464|ref|ZP_08715119.1| hypothetical protein MCOL_06301 [Mycobacterium colombiense CECT 
3035]
 gi|342134168|gb|EGT87348.1| hypothetical protein MCOL_06301 [Mycobacterium colombiense CECT 
3035]
Length=114

 Score = 80.5 bits (197),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 46/101 (46%), Positives = 64/101 (64%), Gaps = 2/101 (1%)

Query  13   MRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLC  72
            MR L+ L  S AT+I LAAP  AD   +D  FL  L  AG+TY D G+AIT  K++C L 
Sbjct  1    MRFLLGLT-SLATVIFLAAPAHAD-IDNDQDFLKDLRDAGLTYQDGGNAITIGKSVCDLL  58

Query  73   ANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
             +G +  ++V DLR+ NPG    +AAKF  +A+  YCP+++
Sbjct  59   DDGQSDAKIVTDLRNQNPGFQGAAAAKFTYLAAAHYCPKYI  99


>gi|336457566|gb|EGO36571.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=111

 Score = 80.1 bits (196),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 41/88 (47%), Positives = 55/88 (63%), Gaps = 2/88 (2%)

Query  27   IGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGLQLVADLR  86
            +G+A P  AD   DD AFLAAL++AGITY DP  AI A + +C L  +G T L ++ D+ 
Sbjct  14   VGMAIPAHAD--SDDDAFLAALNKAGITYPDPTRAIRAGQKVCDLAGSGTTELDIIRDVH  71

Query  87   DYNPGLTMDSAAKFAAIASGAYCPEHLE  114
            + NP  +   AA F   A+GAYCP+ L 
Sbjct  72   ELNPAFSTAKAALFVQAAAGAYCPDRLS  99


>gi|118465355|ref|YP_882735.1| hypothetical protein MAV_3557 [Mycobacterium avium 104]
 gi|118166642|gb|ABK67539.1| conserved hypothetical protein [Mycobacterium avium 104]
 gi|336458836|gb|EGO37793.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=114

 Score = 80.1 bits (196),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 46/101 (46%), Positives = 63/101 (63%), Gaps = 2/101 (1%)

Query  13   MRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLC  72
            MR+ + L   AAT IGLAAP  AD   +D  FL  L  AGITY D G+AIT  K++C L 
Sbjct  1    MRLFLGLCALAAT-IGLAAPAHAD-IDNDQDFLKDLRDAGITYQDAGNAITIGKSVCELL  58

Query  73   ANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
             +G +  ++V DLR+ NP     SAAKF  +++  YCP+++
Sbjct  59   DDGQSDAKIVTDLRNQNPAFQGASAAKFTYLSAAHYCPKYI  99


>gi|118467287|ref|YP_882098.1| hypothetical protein MAV_2912 [Mycobacterium avium 104]
 gi|254775387|ref|ZP_05216903.1| hypothetical protein MaviaA2_12061 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|118168574|gb|ABK69471.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=111

 Score = 80.1 bits (196),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 41/88 (47%), Positives = 55/88 (63%), Gaps = 2/88 (2%)

Query  27   IGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGLQLVADLR  86
            +G+A P  AD   DD AFLAAL++AGITY DP  AI A + +C L  +G T L ++ D+ 
Sbjct  14   VGMAIPAHAD--SDDDAFLAALNKAGITYPDPTRAIRAGQKVCDLAGSGTTELDIIRDVH  71

Query  87   DYNPGLTMDSAAKFAAIASGAYCPEHLE  114
            + NP  +   AA F   A+GAYCP+ L 
Sbjct  72   ELNPAFSTAKAALFVQAAAGAYCPDRLS  99


>gi|333989644|ref|YP_004522258.1| hypothetical protein JDM601_1004 [Mycobacterium sp. JDM601]
 gi|333485612|gb|AEF35004.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=101

 Score = 80.1 bits (196),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 46/96 (48%), Positives = 62/96 (65%), Gaps = 2/96 (2%)

Query  19   LLLSAAT-MIGLAAPGKADPTGDDAAFLAALDQAGITYADPGH-AITAAKAMCGLCANGV  76
            LLL+  T M+GLAAPG ADP G DAAFL AL  AG+++      AI+A  ++C L   G+
Sbjct  5    LLLAGVTAMMGLAAPGHADPVGSDAAFLTALSGAGLSHRGSDQVAISAGHSVCQLMDAGL  64

Query  77   TGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEH  112
            + +  V  ++  NPG T+  AA+FA IA+  YCPEH
Sbjct  65   SPMDTVVAVQTTNPGFTLQRAAEFARIAAVNYCPEH  100


>gi|342861294|ref|ZP_08717942.1| hypothetical protein MCOL_20521 [Mycobacterium colombiense CECT 
3035]
 gi|342131194|gb|EGT84475.1| hypothetical protein MCOL_20521 [Mycobacterium colombiense CECT 
3035]
Length=111

 Score = 80.1 bits (196),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 46/102 (46%), Positives = 57/102 (56%), Gaps = 3/102 (2%)

Query  13   MRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLC  72
            MR L   L  A    GLA P  AD   DD AFLAAL++AGITY +P  AI A + +C L 
Sbjct  1    MRFL-PFLAGAVAFAGLALPAHAD--SDDDAFLAALNKAGITYQNPDRAIKAGQKVCDLA  57

Query  73   ANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLE  114
             +G T L ++ D+ D NP  T   AA F   A+  YCP+ L 
Sbjct  58   NSGTTELDIIRDVHDLNPAFTTAKAALFVQAAASVYCPDRLS  99


>gi|254775999|ref|ZP_05217515.1| hypothetical protein MaviaA2_15205 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=114

 Score = 79.7 bits (195),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 46/101 (46%), Positives = 62/101 (62%), Gaps = 2/101 (1%)

Query  13   MRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLC  72
            MR  + L   AAT IGLAAP  AD   +D  FL  L  AGITY D G+AIT  K++C L 
Sbjct  1    MRFFLGLCALAAT-IGLAAPAHAD-IDNDQDFLKDLRDAGITYQDAGNAITIGKSVCELL  58

Query  73   ANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
             +G +  ++V DLR+ NP     SAAKF  +++  YCP+++
Sbjct  59   DDGQSDAKIVTDLRNQNPAFQGASAAKFTYLSAAHYCPKYI  99


>gi|254818542|ref|ZP_05223543.1| hypothetical protein MintA_01391 [Mycobacterium intracellulare 
ATCC 13950]
Length=114

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 45/101 (45%), Positives = 62/101 (62%), Gaps = 2/101 (1%)

Query  13   MRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLC  72
            MR L+ L  SAA  +GLA P  AD   +D  FL  L  AGITY D G+AIT  K++C L 
Sbjct  1    MRFLLGLC-SAAAALGLAVPAHAD-VDNDQDFLKDLRDAGITYQDAGNAITIGKSVCELL  58

Query  73   ANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
             +G +  ++V DLR+ NP     SAAKF  +++  YCP+++
Sbjct  59   DDGQSDAKIVTDLRNQNPAFQGASAAKFTFLSAAHYCPKYI  99


>gi|240169738|ref|ZP_04748397.1| hypothetical protein MkanA1_10522 [Mycobacterium kansasii ATCC 
12478]
Length=104

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 43/95 (46%), Positives = 58/95 (62%), Gaps = 1/95 (1%)

Query  19   LLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTG  78
            +L    T+IGLAAP +AD    D AFL AL  AGITY + G  I   K +C +   G + 
Sbjct  1    MLACIVTVIGLAAPARADDK-QDQAFLVALGAAGITYQNAGATIATGKKVCDMAKEGKSA  59

Query  79   LQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
            +++V  L+  +P LT  +AA+F AIA+G YCPE L
Sbjct  60   IEVVTYLQGLSPQLTQPNAARFTAIAAGVYCPEQL  94


>gi|342861289|ref|ZP_08717937.1| hypothetical protein MCOL_20496 [Mycobacterium colombiense CECT 
3035]
 gi|342131189|gb|EGT84470.1| hypothetical protein MCOL_20496 [Mycobacterium colombiense CECT 
3035]
Length=108

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 43/93 (47%), Positives = 55/93 (60%), Gaps = 3/93 (3%)

Query  27   IGLAAPGKADPT---GDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGLQLVA  83
            IG+A     DP    GD+A FLA+L  AGITYA P  AIT AK++C    +G  G Q+V 
Sbjct  16   IGMAPLAHGDPVTPGGDEAGFLASLRSAGITYATPEAAITFAKSVCVSMGDGEVGPQMVD  75

Query  84   DLRDYNPGLTMDSAAKFAAIASGAYCPEHLEHH  116
            +L+  NP LT + A  F AIA+  YCP+ L   
Sbjct  76   ELKSQNPELTNERATSFLAIAAKYYCPQQLNRQ  108


>gi|342860982|ref|ZP_08717631.1| hypothetical protein MCOL_18962 [Mycobacterium colombiense CECT 
3035]
 gi|342131426|gb|EGT84696.1| hypothetical protein MCOL_18962 [Mycobacterium colombiense CECT 
3035]
Length=131

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 36/76 (48%), Positives = 49/76 (65%), Gaps = 0/76 (0%)

Query  38   TGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGLQLVADLRDYNPGLTMDSA  97
            +G DA+F+AAL+QAGITY DP  A+   K  C L   G   ++++  +   NPG T D A
Sbjct  26   SGADASFIAALNQAGITYQDPAAAVGVGKRACQLMDEGSPQVEVIKSVSSSNPGFTEDGA  85

Query  98   AKFAAIASGAYCPEHL  113
            A+F  IA+ AYCP+HL
Sbjct  86   AQFTMIAASAYCPQHL  101


>gi|118618631|ref|YP_906963.1| hypothetical protein MUL_3300 [Mycobacterium ulcerans Agy99]
 gi|183982063|ref|YP_001850354.1| hypothetical protein MMAR_2049 [Mycobacterium marinum M]
 gi|118570741|gb|ABL05492.1| conserved secreted protein [Mycobacterium ulcerans Agy99]
 gi|183175389|gb|ACC40499.1| conserved secreted protein [Mycobacterium marinum M]
Length=107

 Score = 77.8 bits (190),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 50/104 (49%), Positives = 62/104 (60%), Gaps = 3/104 (2%)

Query  13   MRMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLC  72
            M++LV +    A M+GLAAP  AD   +D AFL AL +AGITY D   AI AAK +C   
Sbjct  1    MKLLVGVT-GLAVMVGLAAPAHAD--ANDDAFLVALGKAGITYPDAARAIAAAKWICQQV  57

Query  73   ANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHLEHH  116
             NG   + +V  ++  N GL  D AAKF AIA+ AYCP  L  H
Sbjct  58   NNGTQTVDVVKQVQSSNSGLQEDGAAKFTAIAANAYCPAILSGH  101


>gi|118463814|ref|YP_882093.1| hypothetical protein MAV_2907 [Mycobacterium avium 104]
 gi|254775383|ref|ZP_05216899.1| hypothetical protein MaviaA2_12041 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|118165101|gb|ABK65998.1| conserved hypothetical protein [Mycobacterium avium 104]
 gi|336457570|gb|EGO36575.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=102

 Score = 77.0 bits (188),  Expect = 9e-13, Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 50/80 (63%), Gaps = 0/80 (0%)

Query  36   DPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGLQLVADLRDYNPGLTMD  95
            DP  D+A FLA+L  AGI YA P  AI  A+A+C    NG +G QL+ +L+  NPGLT D
Sbjct  22   DPGVDEAGFLASLRSAGIGYATPQGAIKFAQAVCVSMGNGESGPQLLDELKSQNPGLTND  81

Query  96   SAAKFAAIASGAYCPEHLEH  115
             A  F AIA+  YCP+ L  
Sbjct  82   HATSFLAIAAKYYCPQQLNR  101


>gi|333989793|ref|YP_004522407.1| hypothetical protein JDM601_1153 [Mycobacterium sp. JDM601]
 gi|333485761|gb|AEF35153.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=108

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 38/88 (44%), Positives = 51/88 (58%), Gaps = 0/88 (0%)

Query  30   AAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGLQLVADLRDYN  89
            A P +ADP   D  FLAAL  AGITY  P  AI  AK +C   A G    +++  L++ N
Sbjct  17   AGPAQADPADVDTDFLAALQAAGITYNRPDQAIVTAKMVCRFIAEGKPSPEVLDGLKERN  76

Query  90   PGLTMDSAAKFAAIASGAYCPEHLEHHP  117
            PGLT +  + F  IA+ +YCP+ L  +P
Sbjct  77   PGLTTEHGSMFVGIAAHSYCPDQLVQNP  104


>gi|118618176|ref|YP_906508.1| hypothetical protein MUL_2724 [Mycobacterium ulcerans Agy99]
 gi|118570286|gb|ABL05037.1| conserved hypothetical membrane protein [Mycobacterium ulcerans 
Agy99]
Length=99

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 37/75 (50%), Positives = 47/75 (63%), Gaps = 0/75 (0%)

Query  39   GDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGLQLVADLRDYNPGLTMDSAA  98
            GDD  FL AL + GITY  P  AI AA+A+C     G +GL +V ++   NPG  MD+AA
Sbjct  22   GDDVGFLVALQRIGITYPSPAQAIDAARAVCVCLDRGESGLAVVQEVTARNPGFDMDAAA  81

Query  99   KFAAIASGAYCPEHL  113
             FA I++  YCP HL
Sbjct  82   HFAVISTTYYCPHHL  96


>gi|183983439|ref|YP_001851730.1| hypothetical protein MMAR_3450 [Mycobacterium marinum M]
 gi|183176765|gb|ACC41875.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=99

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 37/75 (50%), Positives = 47/75 (63%), Gaps = 0/75 (0%)

Query  39   GDDAAFLAALDQAGITYADPGHAITAAKAMCGLCANGVTGLQLVADLRDYNPGLTMDSAA  98
            GDD  FL AL + GITY  P  AI AA+A+C     G +GL +V ++   NPG  MD+AA
Sbjct  22   GDDVGFLVALQRIGITYPSPAQAIDAARAVCVCLDRGESGLAVVQEVTARNPGFDMDAAA  81

Query  99   KFAAIASGAYCPEHL  113
             FA I++  YCP HL
Sbjct  82   HFAVISATYYCPHHL  96


>gi|333991945|ref|YP_004524559.1| hypothetical protein JDM601_3305 [Mycobacterium sp. JDM601]
 gi|333487913|gb|AEF37305.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=101

 Score = 74.3 bits (181),  Expect = 6e-12, Method: Compositional matrix adjust.
 Identities = 42/101 (42%), Positives = 64/101 (64%), Gaps = 3/101 (2%)

Query  14   RMLVALLLSAATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHA-ITAAKAMCGLC  72
            R+L+   LSA  M+GLAAP  A P+G D  FLA L  AG+++     A ++A +A+C L 
Sbjct  3    RLLLLAGLSA--MVGLAAPAHAAPSGVDGQFLATLSGAGLSHRASDQATVSAGRAVCQLM  60

Query  73   ANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
              G++ +  V  ++  NPG T+ +A +FAAI++  YCPEH+
Sbjct  61   DAGLSPMDTVVAVQATNPGFTIQTAGQFAAISTAHYCPEHM  101


>gi|296169238|ref|ZP_06850891.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896136|gb|EFG75803.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=129

 Score = 73.9 bits (180),  Expect = 8e-12, Method: Compositional matrix adjust.
 Identities = 41/102 (41%), Positives = 57/102 (56%), Gaps = 2/102 (1%)

Query  13   MRMLVALLLSAATMIGLAAPGKADPTGD-DAAFLAALDQAGITYADPGHAITAAKAMCGL  71
            MRM + +L S A +IG A P  ADP+G+ DA FLAALD++G+ Y +   AI   K  C L
Sbjct  1    MRMFL-VLASFAAIIGAATPAHADPSGNPDADFLAALDRSGVPYKNAAVAIRVGKKACQL  59

Query  72   CANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEHL  113
               G +   ++  +   N G T+  A KF   A   YCP+H+
Sbjct  60   MDQGHSEADVIQSVSSENAGFTVSDATKFTTSAVSVYCPQHI  101


>gi|118466065|ref|YP_882736.1| hypothetical protein MAV_3558 [Mycobacterium avium 104]
 gi|118167352|gb|ABK68249.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=122

 Score = 72.4 bits (176),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 44/105 (42%), Positives = 58/105 (56%), Gaps = 4/105 (3%)

Query  10   CRPMRMLVALLLSA--ATMIGLAAPGKADPTGDDAAFLAALDQAGITYADPGHAITAAKA  67
            C+  R +   L+ A  A +IGLA P +AD T D  AF+A+LD+AGI Y D   A  A K 
Sbjct  3    CKNHRFMKLFLIVAGFAAVIGLAVPARADSTDD--AFVASLDKAGIKYGDADKAAGAGKW  60

Query  68   MCGLCANGVTGLQLVADLRDYNPGLTMDSAAKFAAIASGAYCPEH  112
            +C     G     +V+ L+  N  L+ D A  FAAIA  AYCP+ 
Sbjct  61   VCTTLQGGKQMSDVVSTLQSKNSNLSDDHANTFAAIAVNAYCPDQ  105



Lambda     K      H
   0.321    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129536132814


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40