BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1817 Length=487 Score E Sequences producing significant alignments: (Bits) Value gi|15608954|ref|NP_216333.1| hypothetical protein Rv1817 [Mycoba... 989 0.0 gi|289447431|ref|ZP_06437175.1| flavoprotein [Mycobacterium tube... 987 0.0 gi|340626826|ref|YP_004745278.1| putative flavoprotein [Mycobact... 980 0.0 gi|240173105|ref|ZP_04751763.1| hypothetical protein MkanA1_2758... 865 0.0 gi|342861282|ref|ZP_08717930.1| hypothetical protein MCOL_20461 ... 848 0.0 gi|118618449|ref|YP_906781.1| flavoprotein [Mycobacterium ulcera... 840 0.0 gi|183982701|ref|YP_001850992.1| flavoprotein [Mycobacterium mar... 830 0.0 gi|296164804|ref|ZP_06847363.1| succinate dehydrogenase [Mycobac... 815 0.0 gi|254823249|ref|ZP_05228250.1| hypothetical protein MintA_25189... 761 0.0 gi|333990554|ref|YP_004523168.1| flavoprotein [Mycobacterium sp.... 749 0.0 gi|118463573|ref|YP_882083.1| hypothetical protein MAV_2897 [Myc... 749 0.0 gi|41407628|ref|NP_960464.1| hypothetical protein MAP1530 [Mycob... 748 0.0 gi|336457580|gb|EGO36585.1| succinate dehydrogenase/fumarate red... 748 0.0 gi|169629475|ref|YP_001703124.1| hypothetical protein MAB_2389 [... 745 0.0 gi|126435466|ref|YP_001071157.1| hypothetical protein Mjls_2887 ... 734 0.0 gi|108799822|ref|YP_640019.1| hypothetical protein Mmcs_2856 [My... 732 0.0 gi|315444329|ref|YP_004077208.1| succinate dehydrogenase/fumarat... 722 0.0 gi|145223997|ref|YP_001134675.1| hypothetical protein Mflv_3411 ... 720 0.0 gi|118472320|ref|YP_887960.1| hypothetical protein MSMEG_3657 [M... 704 0.0 gi|120404144|ref|YP_953973.1| hypothetical protein Mvan_3165 [My... 704 0.0 gi|326383601|ref|ZP_08205287.1| hypothetical protein SCNU_11720 ... 696 0.0 gi|343925411|ref|ZP_08764931.1| hypothetical protein GOALK_045_0... 675 0.0 gi|119714563|ref|YP_921528.1| hypothetical protein Noca_0296 [No... 666 0.0 gi|262204363|ref|YP_003275571.1| fumarate reductase/succinate de... 656 0.0 gi|311744214|ref|ZP_07718018.1| succinate dehydrogenase [Aeromic... 584 1e-164 gi|333918688|ref|YP_004492269.1| putative fumarate reductase/suc... 557 1e-156 gi|15841287|ref|NP_336324.1| hypothetical protein MT1865 [Mycoba... 495 7e-138 gi|339328197|ref|YP_004687889.1| fumarate reductase flavoprotein... 424 2e-116 gi|146275714|ref|YP_001165874.1| fumarate reductase/succinate de... 402 8e-110 gi|334140851|ref|YP_004534057.1| fumarate reductase/succinate de... 395 9e-108 gi|329897340|ref|ZP_08272041.1| fumarate reductase/succinate deh... 339 5e-91 gi|170701410|ref|ZP_02892369.1| Succinate dehydrogenase [Burkhol... 339 7e-91 gi|78062368|ref|YP_372276.1| hypothetical protein Bcep18194_B151... 336 5e-90 gi|206563425|ref|YP_002234188.1| hypothetical protein BCAM1577 [... 332 7e-89 gi|312138806|ref|YP_004006142.1| fumarate reductase/succinate de... 320 4e-85 gi|325676494|ref|ZP_08156172.1| succinate dehydrogenase [Rhodoco... 319 6e-85 gi|40062891|gb|AAR37762.1| conserved hypothetical protein [uncul... 319 7e-85 gi|111022663|ref|YP_705635.1| hypothetical protein RHA1_ro05698 ... 319 8e-85 gi|339328460|ref|YP_004688152.1| fumarate reductase flavoprotein... 317 2e-84 gi|77361069|ref|YP_340644.1| hypothetical protein PSHAa2146 [Pse... 317 4e-84 gi|329897950|ref|ZP_08272258.1| fumarate reductase/succinate deh... 315 1e-83 gi|119504169|ref|ZP_01626250.1| hypothetical protein MGP2080_104... 315 2e-83 gi|73541349|ref|YP_295869.1| hypothetical protein Reut_A1659 [Ra... 314 3e-83 gi|146275911|ref|YP_001166071.1| hypothetical protein Saro_3686 ... 313 3e-83 gi|334145019|ref|YP_004538228.1| hypothetical protein PP1Y_Mpl31... 309 6e-82 gi|226306873|ref|YP_002766833.1| hypothetical protein RER_33860 ... 306 6e-81 gi|229492746|ref|ZP_04386547.1| putative FAD binding domain prot... 304 2e-80 gi|226365175|ref|YP_002782958.1| hypothetical protein ROP_57660 ... 304 3e-80 gi|254482707|ref|ZP_05095945.1| putative FAD binding domain prot... 303 4e-80 gi|126470057|dbj|BAF48140.1| hypothetical protein [Rhodococcus r... 301 1e-79 >gi|15608954|ref|NP_216333.1| hypothetical protein Rv1817 [Mycobacterium tuberculosis H37Rv] gi|31793007|ref|NP_855500.1| hypothetical protein Mb1848 [Mycobacterium bovis AF2122/97] gi|121637720|ref|YP_977943.1| hypothetical protein BCG_1852 [Mycobacterium bovis BCG str. Pasteur 1173P2] 74 more sequence titles Length=487 Score = 989 bits (2557), Expect = 0.0, Method: Compositional matrix adjust. Identities = 487/487 (100%), Positives = 487/487 (100%), Gaps = 0/487 (0%) Query 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA Sbjct 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 Query 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL Sbjct 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 Query 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID Sbjct 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 Query 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP Sbjct 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 Query 241 DMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGII 300 DMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGII Sbjct 241 DMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGII 300 Query 301 VNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEME 360 VNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEME Sbjct 301 VNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEME 360 Query 361 AALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFT 420 AALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFT Sbjct 361 AALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFT 420 Query 421 LGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHA 480 LGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHA Sbjct 421 LGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHA 480 Query 481 AARAQGM 487 AARAQGM Sbjct 481 AARAQGM 487 >gi|289447431|ref|ZP_06437175.1| flavoprotein [Mycobacterium tuberculosis CPHL_A] gi|289420389|gb|EFD17590.1| flavoprotein [Mycobacterium tuberculosis CPHL_A] Length=487 Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/487 (99%), Positives = 487/487 (100%), Gaps = 0/487 (0%) Query 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA Sbjct 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 Query 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL Sbjct 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 Query 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID Sbjct 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 Query 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP Sbjct 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 Query 241 DMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGII 300 DMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGII Sbjct 241 DMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGII 300 Query 301 VNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEME 360 VNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEA+LEHPKMPLVPLIDGWETVVEME Sbjct 301 VNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAYLEHPKMPLVPLIDGWETVVEME 360 Query 361 AALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFT 420 AALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFT Sbjct 361 AALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFT 420 Query 421 LGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHA 480 LGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHA Sbjct 421 LGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHA 480 Query 481 AARAQGM 487 AARAQGM Sbjct 481 AARAQGM 487 >gi|340626826|ref|YP_004745278.1| putative flavoprotein [Mycobacterium canettii CIPT 140010059] gi|340005016|emb|CCC44165.1| putative flavoprotein [Mycobacterium canettii CIPT 140010059] Length=487 Score = 980 bits (2533), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/482 (100%), Positives = 482/482 (100%), Gaps = 0/482 (0%) Query 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA Sbjct 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 Query 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL Sbjct 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 Query 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID Sbjct 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 Query 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP Sbjct 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 Query 241 DMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGII 300 DMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGII Sbjct 241 DMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGII 300 Query 301 VNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEME 360 VNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEME Sbjct 301 VNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEME 360 Query 361 AALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFT 420 AALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFT Sbjct 361 AALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFT 420 Query 421 LGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHA 480 LGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHA Sbjct 421 LGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHA 480 Query 481 AA 482 AA Sbjct 481 AA 482 >gi|240173105|ref|ZP_04751763.1| hypothetical protein MkanA1_27581 [Mycobacterium kansasii ATCC 12478] Length=490 Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/472 (92%), Positives = 450/472 (96%), Gaps = 0/472 (0%) Query 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 MSTD+PA VSA++V SWSDDVDV VIGFGIAGGCAAV+AAAAGARVLVLERAAAAGGTT+ Sbjct 1 MSTDLPAIVSADSVASWSDDVDVVVIGFGIAGGCAAVTAAAAGARVLVLERAAAAGGTTS 60 Query 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 LAGGHFYLGGGT VQ ATGHPDSP+EMYKYLVAVSR+PDH KIRAYCDGSVEHFNWLE L Sbjct 61 LAGGHFYLGGGTAVQQATGHPDSPDEMYKYLVAVSRQPDHAKIRAYCDGSVEHFNWLEDL 120 Query 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPF E AVPAPRGHKVPVPGDTGGA+MVID Sbjct 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFFEKAVPAPRGHKVPVPGDTGGASMVID 180 Query 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 LLLKRAASLG+QIRYETGATELIVDG G VTGVMWKRFSETGAIKAKSVIIAAGGFVMNP Sbjct 181 LLLKRAASLGVQIRYETGATELIVDGLGAVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 Query 241 DMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGII 300 DMVAKYTPKLAEKPFVLGNTYDDGLGIR+G+SAGGAT+HMDQ+FITAPPYPPSILLTG+I Sbjct 241 DMVAKYTPKLAEKPFVLGNTYDDGLGIRMGISAGGATEHMDQIFITAPPYPPSILLTGVI 300 Query 301 VNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEME 360 VNKLGQRFVAEDSYHSRTAGFIM+QP SAAYLIVDEAHLE P MPLVPLIDGWETV EME Sbjct 301 VNKLGQRFVAEDSYHSRTAGFIMDQPGSAAYLIVDEAHLERPTMPLVPLIDGWETVAEME 360 Query 361 AALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFT 420 AALGIPPGNL ATLDRYN YAARG DPDFHKQPEFLA QD GPWGAFDMSLGKAMYAGFT Sbjct 361 AALGIPPGNLTATLDRYNTYAARGEDPDFHKQPEFLAPQDKGPWGAFDMSLGKAMYAGFT 420 Query 421 LGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFF 472 LGGLATSVDG+VLRDDG+V+ GLYA GACASNIAQDGKGYASGTQLGEGSFF Sbjct 421 LGGLATSVDGEVLRDDGSVIPGLYAAGACASNIAQDGKGYASGTQLGEGSFF 472 >gi|342861282|ref|ZP_08717930.1| hypothetical protein MCOL_20461 [Mycobacterium colombiense CECT 3035] gi|342131182|gb|EGT84463.1| hypothetical protein MCOL_20461 [Mycobacterium colombiense CECT 3035] Length=487 Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/472 (91%), Positives = 449/472 (96%), Gaps = 0/472 (0%) Query 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 MST+IPATVSA+ VT+WSDDVDV VIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTT+ Sbjct 1 MSTEIPATVSADGVTTWSDDVDVVVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTS 60 Query 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 LAGGHFYLGGGT VQ ATG DSPEEMYKYLVAVSR+PD DKIRAYCDGSVEHFNWLE L Sbjct 61 LAGGHFYLGGGTAVQQATGQEDSPEEMYKYLVAVSRQPDLDKIRAYCDGSVEHFNWLEDL 120 Query 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 GFQFERSY+PGKAVIQPNTEGLMFTGNEKVWPFLE AVPAPRGHKVPVPGDTGGA+MVID Sbjct 121 GFQFERSYYPGKAVIQPNTEGLMFTGNEKVWPFLEKAVPAPRGHKVPVPGDTGGASMVID 180 Query 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 LLLKRAA LG+QIRYETGATELIVDG+G VTGVMWK+FSE+GAIKAKSVIIAAGGFVMNP Sbjct 181 LLLKRAADLGVQIRYETGATELIVDGSGAVTGVMWKQFSESGAIKAKSVIIAAGGFVMNP 240 Query 241 DMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGII 300 DMVA+YTPKLAEKPFVLGNTYDDGLGIR+GVSAGGATQHMDQ+FITAPPYPPSILLTGII Sbjct 241 DMVAEYTPKLAEKPFVLGNTYDDGLGIRMGVSAGGATQHMDQIFITAPPYPPSILLTGII 300 Query 301 VNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEME 360 VNKLGQRFVAEDSYHSRT+GFIM+QPDSAA+LIVDEAHLEHPKMPLVPLIDGWETV EME Sbjct 301 VNKLGQRFVAEDSYHSRTSGFIMDQPDSAAFLIVDEAHLEHPKMPLVPLIDGWETVPEME 360 Query 361 AALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFT 420 AALGIP GNL ATLDRYNA AARG DPDFHKQPEFLA QD GPWGAFDMSLGKAMYAGFT Sbjct 361 AALGIPEGNLVATLDRYNANAARGEDPDFHKQPEFLAPQDKGPWGAFDMSLGKAMYAGFT 420 Query 421 LGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFF 472 +GGLA +VDG+V R DG+VV GLYA GACASN+AQDGKGYASGTQLGEGSFF Sbjct 421 IGGLAVTVDGEVQRADGSVVPGLYAAGACASNLAQDGKGYASGTQLGEGSFF 472 >gi|118618449|ref|YP_906781.1| flavoprotein [Mycobacterium ulcerans Agy99] gi|118570559|gb|ABL05310.1| conserved hypothetical flavoprotein [Mycobacterium ulcerans Agy99] Length=658 Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/475 (89%), Positives = 449/475 (95%), Gaps = 3/475 (0%) Query 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 ++T+IPATVS++TVTSW+DDVDV VIGFGIAGGCAAV+AAAAGARVLVLERAAAAGGTT+ Sbjct 166 LNTEIPATVSSDTVTSWTDDVDVVVIGFGIAGGCAAVAAAAAGARVLVLERAAAAGGTTS 225 Query 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 LAGGHFYLGGGT VQ ATGH D+P+EMYKYL AVSR+PDH KIRAYCDGSVEHFNWLE L Sbjct 226 LAGGHFYLGGGTAVQQATGHSDTPDEMYKYLAAVSRQPDHAKIRAYCDGSVEHFNWLEDL 285 Query 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPF E AVPAPRGHKVPVPGDTGGA+MVID Sbjct 286 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFFEKAVPAPRGHKVPVPGDTGGASMVID 345 Query 181 LLLKRAASLGIQIRYETGATELIVDGTG---KVTGVMWKRFSETGAIKAKSVIIAAGGFV 237 LLLKR ASLG+QIRYETGATELIV G+G +V GVMWKRF+ETGAIKAKSVIIAAGGFV Sbjct 346 LLLKRGASLGVQIRYETGATELIVAGSGTAARVAGVMWKRFTETGAIKAKSVIIAAGGFV 405 Query 238 MNPDMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLT 297 MNP+MVAKYTPKLAEKPFVLGNTYDDGLGIR+GVSAGGAT+HMDQ+F+TAPPYPPSILLT Sbjct 406 MNPEMVAKYTPKLAEKPFVLGNTYDDGLGIRMGVSAGGATEHMDQIFVTAPPYPPSILLT 465 Query 298 GIIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVV 357 G+IVNKLG+RFVAEDSYHSRTAGFIM+QPDSAAYLIVDEAHL+HPKMPLVPLIDGWE+V Sbjct 466 GVIVNKLGRRFVAEDSYHSRTAGFIMDQPDSAAYLIVDEAHLQHPKMPLVPLIDGWESVA 525 Query 358 EMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYA 417 EMEAALGIP NL A LDRYN YAARG DPDFHKQPEFLA QD GPWGAFDMSLGKAMYA Sbjct 526 EMEAALGIPDCNLVAALDRYNTYAARGEDPDFHKQPEFLAPQDKGPWGAFDMSLGKAMYA 585 Query 418 GFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFF 472 GFTLGGLATSVDG+VLR DG+VVAGLYA GACASNIAQDGKGYASGTQLGEGSFF Sbjct 586 GFTLGGLATSVDGEVLRSDGSVVAGLYAAGACASNIAQDGKGYASGTQLGEGSFF 640 >gi|183982701|ref|YP_001850992.1| flavoprotein [Mycobacterium marinum M] gi|183176027|gb|ACC41137.1| conserved hypothetical flavoprotein [Mycobacterium marinum M] Length=480 Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/462 (91%), Positives = 441/462 (96%), Gaps = 3/462 (0%) Query 14 VTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYLGGGTT 73 +TSW+DDVDV VIGFGIAGGCAAV+AAAAGARVLVLERAAAAGGTT+LAGGHFYLGGGT Sbjct 1 MTSWTDDVDVVVIGFGIAGGCAAVAAAAAGARVLVLERAAAAGGTTSLAGGHFYLGGGTA 60 Query 74 VQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGLGFQFERSYFPGKA 133 VQ ATGH D+P+EMYKYLVAVSR+PDH KIRAYCDGSVEHFNWLE LGFQFERSYFPGKA Sbjct 61 VQQATGHSDTPDEMYKYLVAVSRQPDHAKIRAYCDGSVEHFNWLEDLGFQFERSYFPGKA 120 Query 134 VIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLLKRAASLGIQI 193 VIQPNTEGLMFTGNEKVWPF E AVPAPRGHKVPVPGDTGGA+MVIDLLLKRAASLG+QI Sbjct 121 VIQPNTEGLMFTGNEKVWPFFEKAVPAPRGHKVPVPGDTGGASMVIDLLLKRAASLGVQI 180 Query 194 RYETGATELIVDGTG---KVTGVMWKRFSETGAIKAKSVIIAAGGFVMNPDMVAKYTPKL 250 RYETGATELIVDG+G +V GVMWKRF+ETGAIKAKSVIIAAGGFVMNP+MVAKYTPKL Sbjct 181 RYETGATELIVDGSGTAARVAGVMWKRFTETGAIKAKSVIIAAGGFVMNPEMVAKYTPKL 240 Query 251 AEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVNKLGQRFVA 310 AEKPFVLGNTYDDGLGIR+GVSAGGAT+HMDQ+F+TAPPYPPSILLTG+IVNKLG+RFVA Sbjct 241 AEKPFVLGNTYDDGLGIRMGVSAGGATEHMDQIFVTAPPYPPSILLTGVIVNKLGRRFVA 300 Query 311 EDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEMEAALGIPPGNL 370 EDSYHSRTAGFIM+QPDSAAYLIVDEAHL+HPKMPLVPLIDGWE+V EMEAALGIP GNL Sbjct 301 EDSYHSRTAGFIMDQPDSAAYLIVDEAHLQHPKMPLVPLIDGWESVAEMEAALGIPDGNL 360 Query 371 AATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFTLGGLATSVDG 430 ATLDRYN YAARG DPDFHKQPEFLA QD GPWGAFDMSLGKAMYAGFTLGGLATSVDG Sbjct 361 VATLDRYNTYAARGEDPDFHKQPEFLAPQDKGPWGAFDMSLGKAMYAGFTLGGLATSVDG 420 Query 431 QVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFF 472 +VLR DG+VVAGLYA GACASNIAQDGKGYASGTQLGEGSFF Sbjct 421 EVLRSDGSVVAGLYAAGACASNIAQDGKGYASGTQLGEGSFF 462 >gi|296164804|ref|ZP_06847363.1| succinate dehydrogenase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899818|gb|EFG79265.1| succinate dehydrogenase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=444 Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/429 (92%), Positives = 411/429 (96%), Gaps = 0/429 (0%) Query 44 ARVLVLERAAAAGGTTALAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKI 103 ARVLVLERAAAAGGTT+LAGGHFYLGGGT VQ ATGHPDSPEEMYKYLVAVSR+PDHDKI Sbjct 1 ARVLVLERAAAAGGTTSLAGGHFYLGGGTAVQEATGHPDSPEEMYKYLVAVSRQPDHDKI 60 Query 104 RAYCDGSVEHFNWLEGLGFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRG 163 RAYC+GSVEHF+WLE LGFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLE AVPAPRG Sbjct 61 RAYCEGSVEHFDWLEDLGFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLEKAVPAPRG 120 Query 164 HKVPVPGDTGGAAMVIDLLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGA 223 HKVPVPGDTGGA+MVIDLLLKRAASLG+QIRYETGATEL+VD +G VTGV WK FSETGA Sbjct 121 HKVPVPGDTGGASMVIDLLLKRAASLGVQIRYETGATELVVDSSGSVTGVTWKHFSETGA 180 Query 224 IKAKSVIIAAGGFVMNPDMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQM 283 IKAKSVIIAAGGFVMNP+MVA YTPKLAEKPFVLGNTYDDGLGIR+GVSAGGAT+HMDQ+ Sbjct 181 IKAKSVIIAAGGFVMNPEMVATYTPKLAEKPFVLGNTYDDGLGIRMGVSAGGATEHMDQI 240 Query 284 FITAPPYPPSILLTGIIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPK 343 FITAPPYPPSILLTGIIVNKLGQRFVAEDSYHSRT+GFIM+QPDSAA+LIVDEAHLEHPK Sbjct 241 FITAPPYPPSILLTGIIVNKLGQRFVAEDSYHSRTSGFIMDQPDSAAFLIVDEAHLEHPK 300 Query 344 MPLVPLIDGWETVVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGP 403 MPLVPLIDGWETV EMEAALGIP GNL ATLDRYNA AARG DPDFHKQPEFLAAQD GP Sbjct 301 MPLVPLIDGWETVPEMEAALGIPEGNLVATLDRYNANAARGEDPDFHKQPEFLAAQDQGP 360 Query 404 WGAFDMSLGKAMYAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASG 463 WGAFDMSLGKAMYAGFT+GGL+TSVDG+VLR DG VVAGLYA GACASNIAQDGKGYASG Sbjct 361 WGAFDMSLGKAMYAGFTIGGLSTSVDGEVLRADGTVVAGLYAAGACASNIAQDGKGYASG 420 Query 464 TQLGEGSFF 472 TQLGEGSFF Sbjct 421 TQLGEGSFF 429 >gi|254823249|ref|ZP_05228250.1| hypothetical protein MintA_25189 [Mycobacterium intracellulare ATCC 13950] Length=497 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/496 (77%), Positives = 420/496 (85%), Gaps = 10/496 (2%) Query 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 MST+IP TVSA VTSWSD+VDV VIGFGIAGGCAAVSAAA GARVLVLERAAAAGGTT+ Sbjct 1 MSTEIPPTVSANDVTSWSDEVDVLVIGFGIAGGCAAVSAAAEGARVLVLERAAAAGGTTS 60 Query 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 LAGGHFYLGGGT VQ ATG DS EEMYKYLV VSREP+ DKIRAYCDGSVEHFNWLE L Sbjct 61 LAGGHFYLGGGTAVQQATGQDDSAEEMYKYLVEVSREPELDKIRAYCDGSVEHFNWLEDL 120 Query 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 GFQFERSY+PGK V+ P TEGL +TGNEKVWPF E A PAPRGH VPVPG+ GGAAMVID Sbjct 121 GFQFERSYYPGKVVVPPGTEGLSYTGNEKVWPFCERAKPAPRGHSVPVPGELGGAAMVID 180 Query 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 LL+KRA +LG+Q RYETGAT LI+D G V GV WK F+ETGAIKAK+VIIAAGGF MNP Sbjct 181 LLVKRADALGVQTRYETGATNLILDDDGAVVGVAWKHFTETGAIKAKAVIIAAGGFAMNP 240 Query 241 DMVAKYTPKLAE----------KPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPY 290 +MVA++TP L + P++LGN DDGL IR+GVSAGGAT+HMD++FITA Y Sbjct 241 EMVAEHTPALGQPRRTKHHGLAAPYILGNPNDDGLSIRMGVSAGGATKHMDELFITAAAY 300 Query 291 PPSILLTGIIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLI 350 PP ILLTG+IVNK G+RFVAEDSYHSRT+ F++EQP+ AYLIVDEAH E P MPL+ + Sbjct 301 PPEILLTGVIVNKEGKRFVAEDSYHSRTSAFVLEQPEQTAYLIVDEAHTEMPAMPLIRFL 360 Query 351 DGWETVVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMS 410 DG+ET+ EMEAALGIP GNLAATLDRYN +AA G DPDFHKQPEFLA QDNGPW FD+S Sbjct 361 DGYETIAEMEAALGIPAGNLAATLDRYNEFAAAGEDPDFHKQPEFLAPQDNGPWAVFDLS 420 Query 411 LGKAMYAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGS 470 LG+AMY+GFT+GGLA +VDG+V RDDG VV GLYA GACASN+AQDGKGYASGTQLGEGS Sbjct 421 LGRAMYSGFTIGGLAVTVDGEVQRDDGTVVPGLYAAGACASNLAQDGKGYASGTQLGEGS 480 Query 471 FFGRRAGAHAAARAQG 486 FFGRRAG HAA RA G Sbjct 481 FFGRRAGTHAARRAGG 496 >gi|333990554|ref|YP_004523168.1| flavoprotein [Mycobacterium sp. JDM601] gi|333486522|gb|AEF35914.1| flavoprotein [Mycobacterium sp. JDM601] Length=485 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/472 (83%), Positives = 428/472 (91%), Gaps = 0/472 (0%) Query 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 M+T+IP T++ E ++SWSD+VDV VIGFGI GGCAAVSAAAAGARVLVLERAA AGGTTA Sbjct 1 MTTEIPETIAVEDISSWSDEVDVVVIGFGIGGGCAAVSAAAAGARVLVLERAAEAGGTTA 60 Query 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 +AGGHFYLGGGT VQ ATGHPDSP+EMYKYLVAVSREP+HDKIRAYCDGSVEHFNWLE L Sbjct 61 MAGGHFYLGGGTAVQQATGHPDSPDEMYKYLVAVSREPEHDKIRAYCDGSVEHFNWLEEL 120 Query 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 G FERSY+P KAVIQPNTEGLM+TGNEKVWP+L AVPAPRGHKVPVPGDT GA MVID Sbjct 121 GVAFERSYYPEKAVIQPNTEGLMYTGNEKVWPYLNQAVPAPRGHKVPVPGDTQGAKMVID 180 Query 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 LLLKRA LG++IRYETGAT L+ D G V GV WK F+E+GAIKAKSV+IAAGGFVMNP Sbjct 181 LLLKRADGLGVEIRYETGATGLVTDAAGAVAGVTWKHFTESGAIKAKSVVIAAGGFVMNP 240 Query 241 DMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGII 300 +MVA+YTPKLAEKPFVLGNTYDDGLGIR+G+S GGAT+HMDQ+FITAP YPPSILLTGII Sbjct 241 EMVAQYTPKLAEKPFVLGNTYDDGLGIRMGMSVGGATKHMDQIFITAPVYPPSILLTGII 300 Query 301 VNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEME 360 VN G+RFVAEDSYHSRT+G++M+QP+SAA+LIVDE HL P++PLV LIDGWETV EME Sbjct 301 VNSDGKRFVAEDSYHSRTSGYVMDQPNSAAFLIVDENHLRTPQVPLVTLIDGWETVPEME 360 Query 361 AALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFT 420 AALGIP GNL ATLDRYN+YAARG DPDFHKQP FLA QD GPWGAFD+SLGKAMYAGFT Sbjct 361 AALGIPEGNLVATLDRYNSYAARGEDPDFHKQPPFLAPQDTGPWGAFDLSLGKAMYAGFT 420 Query 421 LGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFF 472 +GGLATSVDG+VLRDDG+ V GLYA GACA+NIAQDGKGYASGTQLGEGSFF Sbjct 421 IGGLATSVDGEVLRDDGSAVPGLYAAGACAANIAQDGKGYASGTQLGEGSFF 472 >gi|118463573|ref|YP_882083.1| hypothetical protein MAV_2897 [Mycobacterium avium 104] gi|118164860|gb|ABK65757.1| succinate dehydrogenase [Mycobacterium avium 104] Length=497 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/483 (77%), Positives = 415/483 (86%), Gaps = 10/483 (2%) Query 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 MST+IPATVSA VTSWSDDVDV VIGFGIAGGCAAVSAAA GARVLVLERAAAAGGTT+ Sbjct 1 MSTEIPATVSAHDVTSWSDDVDVVVIGFGIAGGCAAVSAAADGARVLVLERAAAAGGTTS 60 Query 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 LAGGHFYLGGGT VQ ATGH DS EEMYKYLVAVSREP+ DKIRAYC+GSVEHFNWLE L Sbjct 61 LAGGHFYLGGGTAVQQATGHDDSAEEMYKYLVAVSREPELDKIRAYCEGSVEHFNWLEDL 120 Query 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 GFQFERSY+PGK V+ P TEGL +TGNEKVWPF E A PAPRGH VPVPG+ GGAAMVID Sbjct 121 GFQFERSYYPGKVVVPPGTEGLSYTGNEKVWPFCEQAKPAPRGHSVPVPGELGGAAMVID 180 Query 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 LL+KRA +LG+QIRYETGAT LIVD G V GV WK F+ETGA+KA +VI+AAGGF MNP Sbjct 181 LLVKRAEALGVQIRYETGATNLIVDDDGAVVGVAWKHFTETGAVKADAVILAAGGFAMNP 240 Query 241 DMVAKYTPKLAE----------KPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPY 290 MVA++TP L + P++LGN +DDGL IR+GVSAGGAT+HMD++FITA Y Sbjct 241 QMVAEHTPALGQPRRTKHHGLVAPYILGNPHDDGLAIRMGVSAGGATKHMDELFITAAAY 300 Query 291 PPSILLTGIIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLI 350 PP +LLTGIIVNK G+RFVAEDSYHSRT+ F++EQP+ AYLIVDEAH E P+MPL+ + Sbjct 301 PPEVLLTGIIVNKEGKRFVAEDSYHSRTSAFVLEQPEQTAYLIVDEAHTEMPEMPLIRFL 360 Query 351 DGWETVVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMS 410 DG+ET+ EMEAALGIP GNLAATL+RYN +AA G DPDFHKQPE+LAAQDNGPW FD+S Sbjct 361 DGYETIAEMEAALGIPAGNLAATLERYNKFAAAGEDPDFHKQPEYLAAQDNGPWAVFDLS 420 Query 411 LGKAMYAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGS 470 LG+AMY+GFT+GGLA SVDG+V R DG+VV GLYA GACASN+AQDGKGYASGTQLGEGS Sbjct 421 LGRAMYSGFTIGGLAVSVDGEVQRADGSVVPGLYAAGACASNLAQDGKGYASGTQLGEGS 480 Query 471 FFG 473 FFG Sbjct 481 FFG 483 >gi|41407628|ref|NP_960464.1| hypothetical protein MAP1530 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395981|gb|AAS03847.1| hypothetical protein MAP_1530 [Mycobacterium avium subsp. paratuberculosis K-10] Length=497 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/483 (77%), Positives = 414/483 (86%), Gaps = 10/483 (2%) Query 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 MST+IPATVSA VTSWSDDVDV VIGFGIAGGCAAVSAAA GARVLVLERAAAAGGTT+ Sbjct 1 MSTEIPATVSAHDVTSWSDDVDVVVIGFGIAGGCAAVSAAADGARVLVLERAAAAGGTTS 60 Query 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 LAGGHFYLGGGT VQ ATGH DS EEMYKYLVAVSREP+ DKIRAYC+GSVEHFNWLE L Sbjct 61 LAGGHFYLGGGTAVQQATGHDDSAEEMYKYLVAVSREPELDKIRAYCEGSVEHFNWLEDL 120 Query 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 GFQFERSY+PGK V+ P TEGL +TGNEKVWPF E A PAPRGH VPVPG+ GGAAMVID Sbjct 121 GFQFERSYYPGKVVVPPGTEGLSYTGNEKVWPFCEQAKPAPRGHSVPVPGELGGAAMVID 180 Query 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 LL+KRA +LG+QIRYETGAT LIVD G V GV WK F+ETGA+KA +VI+AAGGF MNP Sbjct 181 LLVKRAEALGVQIRYETGATNLIVDDDGAVVGVAWKHFTETGAVKADAVILAAGGFAMNP 240 Query 241 DMVAKYTPKLAE----------KPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPY 290 MVA++TP L + P++LGN +DDGL IR+GVSAGGAT+HMD++FITA Y Sbjct 241 QMVAEHTPALGQPRRTKHHGLVAPYILGNPHDDGLAIRMGVSAGGATKHMDELFITAAAY 300 Query 291 PPSILLTGIIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLI 350 PP +LLTGIIVNK G+RFVAEDSYHSRT+ F++EQP+ AYLIVDEAH E P+MPL+ + Sbjct 301 PPEVLLTGIIVNKEGKRFVAEDSYHSRTSAFVLEQPEQTAYLIVDEAHTEMPEMPLIRFL 360 Query 351 DGWETVVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMS 410 DG+ET+ EMEAALGIP GNLAATL+RYN +A G DPDFHKQPE+LAAQDNGPW FD+S Sbjct 361 DGYETIAEMEAALGIPAGNLAATLERYNKFATAGEDPDFHKQPEYLAAQDNGPWAVFDLS 420 Query 411 LGKAMYAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGS 470 LG+AMY+GFT+GGLA SVDG+V R DG+VV GLYA GACASN+AQDGKGYASGTQLGEGS Sbjct 421 LGRAMYSGFTIGGLAVSVDGEVQRADGSVVPGLYAAGACASNLAQDGKGYASGTQLGEGS 480 Query 471 FFG 473 FFG Sbjct 481 FFG 483 >gi|336457580|gb|EGO36585.1| succinate dehydrogenase/fumarate reductase flavoprotein subunit [Mycobacterium avium subsp. paratuberculosis S397] Length=497 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/483 (77%), Positives = 414/483 (86%), Gaps = 10/483 (2%) Query 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 MST+IPATVSA VTSWSDDVDV VIGFGIAGGCAAVSAAA GARVLVLERAAAAGGTT+ Sbjct 1 MSTEIPATVSAHDVTSWSDDVDVVVIGFGIAGGCAAVSAAADGARVLVLERAAAAGGTTS 60 Query 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 LAGGHFYLGGGT VQ ATGH DS EEMYKYLVAVSREP+ DKIRAYC+GSVEHFNWLE L Sbjct 61 LAGGHFYLGGGTAVQQATGHDDSAEEMYKYLVAVSREPELDKIRAYCEGSVEHFNWLEDL 120 Query 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 GFQFERSY+PGK V+ P TEGL +TGNEKVWPF E A PAPRGH VPVPG+ GGAAMVID Sbjct 121 GFQFERSYYPGKVVVPPGTEGLSYTGNEKVWPFCEQAKPAPRGHSVPVPGELGGAAMVID 180 Query 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 LL+KRA +LG+QIRYETGAT LIVD G V GV WK F+ETGA+KA +VI+AAGGF MNP Sbjct 181 LLVKRAEALGVQIRYETGATNLIVDDDGAVVGVAWKHFTETGAVKADAVILAAGGFAMNP 240 Query 241 DMVAKYTPKLAE----------KPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPY 290 MVA++TP L + P++LGN +DDGL IR+GVSAGGAT+HMD++FITA Y Sbjct 241 QMVAEHTPALGQPRRTKHHGLVAPYILGNPHDDGLAIRMGVSAGGATKHMDELFITAAAY 300 Query 291 PPSILLTGIIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLI 350 PP +LLTGIIVNK G+RFVAEDSYHSRT+ F++EQP+ AYLIVDEAH E P+MPL+ + Sbjct 301 PPEVLLTGIIVNKEGKRFVAEDSYHSRTSAFVLEQPEQTAYLIVDEAHTEMPEMPLIRFL 360 Query 351 DGWETVVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMS 410 DG+ET+ EMEAALGIP GNLAATL+RYN +A G DPDFHKQPE+LAAQDNGPW FD+S Sbjct 361 DGYETIAEMEAALGIPAGNLAATLERYNKFATAGEDPDFHKQPEYLAAQDNGPWAVFDLS 420 Query 411 LGKAMYAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGS 470 LG+AMY+GFT+GGLA SVDG+V R DG+VV GLYA GACASN+AQDGKGYASGTQLGEGS Sbjct 421 LGRAMYSGFTIGGLAVSVDGEVQRADGSVVPGLYAAGACASNLAQDGKGYASGTQLGEGS 480 Query 471 FFG 473 FFG Sbjct 481 FFG 483 >gi|169629475|ref|YP_001703124.1| hypothetical protein MAB_2389 [Mycobacterium abscessus ATCC 19977] gi|169241442|emb|CAM62470.1| Possible fumarate reductase/succinate dehydrogenase [Mycobacterium abscessus] Length=487 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/483 (76%), Positives = 416/483 (87%), Gaps = 0/483 (0%) Query 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 MS IP TV+ + +T WSD+VDV VIGFG+ GGCAAVSAA AGA+VL LERAA+AGGTTA Sbjct 1 MSAAIPETVAVQDITEWSDEVDVLVIGFGMGGGCAAVSAAEAGAQVLALERAASAGGTTA 60 Query 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 +AGGHFYLGGGT VQ ATGH DS +EMYKYL+AVS +PD +KIR YCDGSVEHFNWLE L Sbjct 61 MAGGHFYLGGGTAVQQATGHADSADEMYKYLMAVSPDPDPEKIRLYCDGSVEHFNWLEAL 120 Query 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 GFQFERS++P KAVIQPNTEGLMFTGNE VWP+ + A+PAPRGHKVP PGDTGGA MV++ Sbjct 121 GFQFERSFYPEKAVIQPNTEGLMFTGNELVWPYRDEAIPAPRGHKVPKPGDTGGAGMVVE 180 Query 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 LL +RAA LGI IRYETGAT LI+D G V GV WK F+ETGAI+AKSVIIAAGGFVMNP Sbjct 181 LLAQRAAELGIPIRYETGATALILDEGGAVVGVTWKHFTETGAIRAKSVIIAAGGFVMNP 240 Query 241 DMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGII 300 MVA+YTPKLAEKPFVLG+TYDDGLGIRLGVSAGGAT++M+Q+F+TAP YPPS LLTGII Sbjct 241 AMVAEYTPKLAEKPFVLGSTYDDGLGIRLGVSAGGATRNMNQIFVTAPVYPPSGLLTGII 300 Query 301 VNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEME 360 VNK G+RFV+EDSYHSRT+GF+M+Q DSAAYLIVD H++ P +PL P IDGWETV EME Sbjct 301 VNKNGERFVSEDSYHSRTSGFVMDQVDSAAYLIVDSEHMDRPTLPLTPFIDGWETVAEME 360 Query 361 AALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFT 420 AALGIP GNL TL RYN YAA+G DPDFHK P++LAAQ GPWGAFD++LGKAMYAGFT Sbjct 361 AALGIPAGNLDKTLQRYNEYAAKGEDPDFHKHPKYLAAQGTGPWGAFDLTLGKAMYAGFT 420 Query 421 LGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHA 480 LGGL T DG+VL + G + GLYA GA ASNIAQDGKGY+SGT+LGE SFFGRRAG+HA Sbjct 421 LGGLRTDADGRVLTESGEAIPGLYAAGASASNIAQDGKGYSSGTRLGEASFFGRRAGSHA 480 Query 481 AAR 483 + R Sbjct 481 SVR 483 >gi|126435466|ref|YP_001071157.1| hypothetical protein Mjls_2887 [Mycobacterium sp. JLS] gi|126235266|gb|ABN98666.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Mycobacterium sp. JLS] Length=658 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/493 (76%), Positives = 422/493 (86%), Gaps = 11/493 (2%) Query 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 MST+IP TV A +V WSD+VDV V+GFGIAGGCAAVSAAAAGARVLVLE+AAAAGGTT+ Sbjct 166 MSTEIPETVEAGSVHEWSDEVDVVVVGFGIAGGCAAVSAAAAGARVLVLEKAAAAGGTTS 225 Query 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 +AGGHFYLGGGT VQ ATGH D+ EEMYKYLVA+SREP+HDKIRAYC+GSV+HF WLE L Sbjct 226 MAGGHFYLGGGTAVQQATGHEDTAEEMYKYLVAMSREPEHDKIRAYCEGSVDHFEWLENL 285 Query 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 GFQFERSY+PGK V+ P TEGL +TGNEKVWPF E A PAPRGH VPVPG+ GGAAMVID Sbjct 286 GFQFERSYYPGKVVVPPGTEGLSYTGNEKVWPFCEQAKPAPRGHSVPVPGELGGAAMVID 345 Query 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 LLLKRAA LG+QIRYETG T L+V G V V WK F+ETGAIKAK+VIIAAGGF MNP Sbjct 346 LLLKRAADLGVQIRYETGVTNLVVGDGGVVG-VKWKHFAETGAIKAKAVIIAAGGFAMNP 404 Query 241 DMVAKYTPKLAEK----------PFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPY 290 +MVA+YTP L K P++LGNT DDGLGIR+G+SAGG +++DQ+FITA Y Sbjct 405 EMVAEYTPALGHKRKTKHHGEVEPYILGNTNDDGLGIRMGISAGGVAKNLDQLFITAAAY 464 Query 291 PPSILLTGIIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLI 350 PP +LLTG+IVNK GQRFVAEDSYHSRT+ F++EQPD AYLIVDEAH++ P+MPL+ I Sbjct 465 PPEVLLTGVIVNKDGQRFVAEDSYHSRTSAFVLEQPDQTAYLIVDEAHMQMPEMPLIKFI 524 Query 351 DGWETVVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMS 410 DGWETVVEMEAALGIP G LAATL+RYN +AARG DPDFHKQP++LAAQD GPW AFD+S Sbjct 525 DGWETVVEMEAALGIPEGKLAATLERYNEHAARGEDPDFHKQPDYLAAQDKGPWAAFDLS 584 Query 411 LGKAMYAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGS 470 LG+AMY+GFT+GGLA S+DG+VLR+DG+ + GLYA GACASNIAQDGKGYASGTQLGEGS Sbjct 585 LGRAMYSGFTMGGLAVSIDGEVLREDGSPIPGLYAAGACASNIAQDGKGYASGTQLGEGS 644 Query 471 FFGRRAGAHAAAR 483 FFGRRAG HAA R Sbjct 645 FFGRRAGTHAAQR 657 >gi|108799822|ref|YP_640019.1| hypothetical protein Mmcs_2856 [Mycobacterium sp. MCS] gi|119868932|ref|YP_938884.1| hypothetical protein Mkms_2900 [Mycobacterium sp. KMS] gi|108770241|gb|ABG08963.1| fumarate reductase/succinate dehydrogenase flavoprotein-like protein [Mycobacterium sp. MCS] gi|119695021|gb|ABL92094.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Mycobacterium sp. KMS] Length=493 Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/493 (76%), Positives = 420/493 (86%), Gaps = 11/493 (2%) Query 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 MST+IP TV A +V WSD+VDV V+GFGIAGGCAAVSAAAAGARVLVLE+AAAAGGTT+ Sbjct 1 MSTEIPETVEAGSVHEWSDEVDVVVVGFGIAGGCAAVSAAAAGARVLVLEKAAAAGGTTS 60 Query 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 +AGGHFYLGGGT VQ ATGH D+ EEMYKYLVA+SREP+HDKIRAYC+GSV HF WLE L Sbjct 61 MAGGHFYLGGGTAVQQATGHDDTAEEMYKYLVAMSREPEHDKIRAYCEGSVGHFEWLENL 120 Query 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 GFQFERSY+PGK V+ P TEGL +TGNEKVWPF E A PAPRGH VPVPG+ GGAAMVID Sbjct 121 GFQFERSYYPGKVVVPPGTEGLSYTGNEKVWPFCEQAKPAPRGHSVPVPGELGGAAMVID 180 Query 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 LLLKRAA LG+QIRYETG T L+V G V V WK F+ETGAIKAK+VIIAAGGF MNP Sbjct 181 LLLKRAADLGVQIRYETGVTNLVVGDGGVVG-VKWKHFAETGAIKAKAVIIAAGGFAMNP 239 Query 241 DMVAKYTPKLAEK----------PFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPY 290 +MVA+YTP L K P++LGNT DDGLGIR+G+SAGG +++DQ+FITA Y Sbjct 240 EMVAEYTPALGHKRKTKHHGEVEPYILGNTNDDGLGIRMGISAGGVAKNLDQLFITAAAY 299 Query 291 PPSILLTGIIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLI 350 PP ILLTG+IVNK GQRFVAEDSYHSRT+ F++EQPD AYLIVDEAH++ P+MPL+ I Sbjct 300 PPEILLTGVIVNKDGQRFVAEDSYHSRTSAFVLEQPDQTAYLIVDEAHMQMPEMPLIKFI 359 Query 351 DGWETVVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMS 410 DGWETV EMEAALGIP G LAATL+RYN +AARG DPDFHKQP++LAAQD GPW AFD+S Sbjct 360 DGWETVAEMEAALGIPEGKLAATLERYNEHAARGEDPDFHKQPDYLAAQDKGPWAAFDLS 419 Query 411 LGKAMYAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGS 470 LG+AMY+GFT+GGLA S+DG+VLR+DG+ + GLYA GACASNIAQDGKGYASGTQLGEGS Sbjct 420 LGRAMYSGFTMGGLAVSIDGEVLREDGSPIPGLYAAGACASNIAQDGKGYASGTQLGEGS 479 Query 471 FFGRRAGAHAAAR 483 FFGRRAG HAA R Sbjct 480 FFGRRAGTHAAQR 492 >gi|315444329|ref|YP_004077208.1| succinate dehydrogenase/fumarate reductase flavoprotein subunit [Mycobacterium sp. Spyr1] gi|315262632|gb|ADT99373.1| succinate dehydrogenase/fumarate reductase flavoprotein subunit [Mycobacterium sp. Spyr1] Length=502 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/490 (74%), Positives = 405/490 (83%), Gaps = 10/490 (2%) Query 5 IPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGG 64 IP TVS E VTSWSD+ DV VIGFGIAGG AAVSAAAAGARVLVLE+AAAAGGTT++AGG Sbjct 6 IPDTVSVEDVTSWSDETDVVVIGFGIAGGSAAVSAAAAGARVLVLEKAAAAGGTTSMAGG 65 Query 65 HFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGLGFQF 124 HFYLGGGT VQ ATGH DSPEEMY YLV SR P+HDKIRAYCDGSVEHFNWLE LGFQF Sbjct 66 HFYLGGGTAVQQATGHDDSPEEMYNYLVTQSRNPEHDKIRAYCDGSVEHFNWLEALGFQF 125 Query 125 ERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLLK 184 ERSY+PGK V+ P TEGL +TGNEKVWPF E A PAPRGH VPVPG+ GGAAMVIDLL+K Sbjct 126 ERSYYPGKVVVPPGTEGLSYTGNEKVWPFCEQARPAPRGHSVPVPGELGGAAMVIDLLVK 185 Query 185 RAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNPDMVA 244 RA LG+Q+RYETGAT LI D G V GV WK F+ETG IKA SVIIAAGGF MNP+MVA Sbjct 186 RADELGVQMRYETGATALITDADGAVVGVRWKHFTETGDIKANSVIIAAGGFAMNPEMVA 245 Query 245 KYTPKLAEK----------PFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSI 294 +YTP L ++ P++LGN DDGLGI+LGVSAGGAT ++DQ+FITA YPP I Sbjct 246 EYTPALGQERKTKHHGNVAPYILGNPNDDGLGIKLGVSAGGATDNLDQLFITAAAYPPEI 305 Query 295 LLTGIIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWE 354 LLTGIIVNK G RFVAEDSYHSRT+ F++EQPD AYLIVDEAH++ P+MPL+ +DG+E Sbjct 306 LLTGIIVNKNGDRFVAEDSYHSRTSAFVLEQPDQTAYLIVDEAHMQMPEMPLIKFLDGYE 365 Query 355 TVVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKA 414 T+ E+E LGIP G +AATL+RYN AA G DPDFHKQ E++A QD GPW FD+SLG+A Sbjct 366 TIEELEKELGIPAGRVAATLERYNTNAAAGEDPDFHKQSEYVAPQDKGPWAVFDLSLGRA 425 Query 415 MYAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGR 474 MY+GFT+GGL S+DG+VLRDD + + GLYA GACA NIAQDGKGYASGTQLGEGSFFGR Sbjct 426 MYSGFTMGGLTVSIDGEVLRDDRSAIPGLYAAGACACNIAQDGKGYASGTQLGEGSFFGR 485 Query 475 RAGAHAAARA 484 RAG HAA RA Sbjct 486 RAGEHAARRA 495 >gi|145223997|ref|YP_001134675.1| hypothetical protein Mflv_3411 [Mycobacterium gilvum PYR-GCK] gi|145216483|gb|ABP45887.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Mycobacterium gilvum PYR-GCK] Length=500 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/490 (74%), Positives = 405/490 (83%), Gaps = 10/490 (2%) Query 5 IPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGG 64 IP TVS E VTSWSD+ DV VIGFGIAGG AAVSAAAAGARVLVLE+AAAAGGTT++AGG Sbjct 4 IPDTVSVEDVTSWSDETDVVVIGFGIAGGSAAVSAAAAGARVLVLEKAAAAGGTTSMAGG 63 Query 65 HFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGLGFQF 124 HFYLGGGT VQ ATGH DSPEEMYKYLV SR P+HDKIRAYCDGSVEHFNWLE LGFQF Sbjct 64 HFYLGGGTAVQQATGHDDSPEEMYKYLVTQSRNPEHDKIRAYCDGSVEHFNWLEALGFQF 123 Query 125 ERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLLK 184 ERSY+PGK V+ P TEGL +TGNEKVWPF E A PAPRGH VPVPG+ GGAAMVIDLL+K Sbjct 124 ERSYYPGKVVVPPGTEGLSYTGNEKVWPFCEQARPAPRGHSVPVPGELGGAAMVIDLLVK 183 Query 185 RAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNPDMVA 244 RA LG+Q+RYETGAT LI D G V GV WK F+ETG IKA SVIIAAGGF MNP+MVA Sbjct 184 RADELGVQMRYETGATALITDADGAVVGVRWKHFTETGDIKANSVIIAAGGFAMNPEMVA 243 Query 245 KYTPKLAEK----------PFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSI 294 +YTP L ++ P++LGN DDGLGI+LGVSAGGAT ++DQ+FITA YPP I Sbjct 244 EYTPALGQERKTKHHGNVAPYILGNPNDDGLGIKLGVSAGGATDNLDQLFITAAAYPPEI 303 Query 295 LLTGIIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWE 354 LLTGIIVNK G RFVAEDSYHSRT+ F++EQPD AYLIVDEAH++ P+MPL+ +DG+E Sbjct 304 LLTGIIVNKNGDRFVAEDSYHSRTSAFVLEQPDQTAYLIVDEAHMQMPEMPLIKFLDGYE 363 Query 355 TVVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKA 414 T+ E+E LGIP G +AATL+RYN AA G DPDFHKQ E++A QD GPW FD+SLG+A Sbjct 364 TIEELEKELGIPAGRVAATLERYNTNAAAGEDPDFHKQSEYVAPQDKGPWAVFDLSLGRA 423 Query 415 MYAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGR 474 MY+GFT+GGL S+DG+VLR D + + GLYA GACA NIAQDGKGYASGTQLGEGSFFGR Sbjct 424 MYSGFTMGGLTVSIDGEVLRGDRSAIPGLYAAGACACNIAQDGKGYASGTQLGEGSFFGR 483 Query 475 RAGAHAAARA 484 RAG HAA RA Sbjct 484 RAGEHAARRA 493 >gi|118472320|ref|YP_887960.1| hypothetical protein MSMEG_3657 [Mycobacterium smegmatis str. MC2 155] gi|118173607|gb|ABK74503.1| succinate dehydrogenase [Mycobacterium smegmatis str. MC2 155] Length=499 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/497 (72%), Positives = 407/497 (82%), Gaps = 15/497 (3%) Query 3 TDIPATVSAETVTSW----SDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGT 58 +IP V+A V +W +D+VDV VIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGT Sbjct 2 NEIPDVVNAVDVEAWRDEAADEVDVVVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGT 61 Query 59 TALAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLE 118 +A+AGGHFYLGGGT VQ ATGH D+P+EMYKYLVAV+++PDH KIRAYCDGSVEHFNWLE Sbjct 62 SAMAGGHFYLGGGTAVQRATGHDDTPDEMYKYLVAVAKDPDHAKIRAYCDGSVEHFNWLE 121 Query 119 GLGFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMV 178 LGF+FER+Y+PGK V+ P TEGL +TGNEKVWP+ E A PAPRGH VPVPG+ GGAAMV Sbjct 122 ALGFEFERTYYPGKVVVPPGTEGLSYTGNEKVWPYREQARPAPRGHSVPVPGELGGAAMV 181 Query 179 IDLLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVM 238 IDLLLKRA LG++IRYE G T L+VD G V GV WK F ETG +KA+SVIIAAGGF M Sbjct 182 IDLLLKRAEELGVEIRYEHGVTNLVVD-DGAVAGVKWKHFGETGCVKARSVIIAAGGFAM 240 Query 239 NPDMVAKYTPKLAEK----------PFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAP 288 NP+MVA+YTP L K P++LGN DDGLGIRLGVSAGG + MDQ+FITA Sbjct 241 NPEMVAQYTPALGAKRKTKHHGEVEPYILGNPNDDGLGIRLGVSAGGVARDMDQLFITAA 300 Query 289 PYPPSILLTGIIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVP 348 YPP ILLTGIIVN G+RFVAEDSYHSRT+ F++EQPD AYLIVDEAH+E P MPL+ Sbjct 301 AYPPEILLTGIIVNNRGERFVAEDSYHSRTSAFVLEQPDQEAYLIVDEAHMEMPAMPLIK 360 Query 349 LIDGWETVVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFD 408 IDG+ETV EM ALGIP NL ATL RYN A RG DPDFHK P ++A QD+GPW AFD Sbjct 361 FIDGYETVEEMATALGIPVENLTATLQRYNENARRGEDPDFHKDPAYVAPQDSGPWAAFD 420 Query 409 MSLGKAMYAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGE 468 +SLG+AMY+GFT+GGL S+DG+VLR+DG+ + GLYA GACASNIAQDGKGYASGTQLGE Sbjct 421 LSLGRAMYSGFTMGGLTVSIDGEVLREDGSAIPGLYAAGACASNIAQDGKGYASGTQLGE 480 Query 469 GSFFGRRAGAHAAARAQ 485 GSFFGRRAGAHAA+R + Sbjct 481 GSFFGRRAGAHAASRVR 497 >gi|120404144|ref|YP_953973.1| hypothetical protein Mvan_3165 [Mycobacterium vanbaalenii PYR-1] gi|119956962|gb|ABM13967.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Mycobacterium vanbaalenii PYR-1] Length=525 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/478 (74%), Positives = 402/478 (85%), Gaps = 10/478 (2%) Query 5 IPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGG 64 IP TV+ VTSWSD+VDV V+GFGIAGGCAAVSAAAAGARVLVLE+AAA GGTT++AGG Sbjct 4 IPETVNVGDVTSWSDEVDVVVVGFGIAGGCAAVSAAAAGARVLVLEKAAAVGGTTSMAGG 63 Query 65 HFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGLGFQF 124 HFYLGGGT VQ ATGH DS EEMYKYLV+ SR+P+HDKIRAYC+GSVEHFNWLE LGFQF Sbjct 64 HFYLGGGTAVQQATGHDDSAEEMYKYLVSQSRDPEHDKIRAYCEGSVEHFNWLEALGFQF 123 Query 125 ERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLLK 184 ERSY+PGK V+ P TEGL +TGNEKVWPF E A PAPRGH VPVPG+ GGAAMVIDLLLK Sbjct 124 ERSYYPGKVVVPPGTEGLSYTGNEKVWPFCEQAKPAPRGHSVPVPGELGGAAMVIDLLLK 183 Query 185 RAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNPDMVA 244 RAA LG+QIRYETG T L+VD G V GV WK F+ETG +KAKSV+IAAGGF MN +MVA Sbjct 184 RAADLGVQIRYETGVTGLVVDDDGAVVGVRWKHFTETGEVKAKSVVIAAGGFAMNAEMVA 243 Query 245 KYTPKLAEK----------PFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSI 294 +YTP LA + P++LGN DDGLGI+LGVSAGG ++DQ+FITA YPP I Sbjct 244 EYTPALAAERKTKHHGTVAPYILGNPNDDGLGIKLGVSAGGVAANLDQLFITAAAYPPEI 303 Query 295 LLTGIIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWE 354 LLTG+IVNK GQRFVAEDSYHSRT+ F++EQP+ AYLIVDE H++ P+MPL+ +DG+E Sbjct 304 LLTGVIVNKDGQRFVAEDSYHSRTSAFVLEQPEQTAYLIVDEDHMQMPEMPLIKFVDGFE 363 Query 355 TVVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKA 414 T+ E+E+ALGIP GNLAATL+ YNA AA G DPDFHKQPE+LAAQD GPW FD+SLG+A Sbjct 364 TIAEIESALGIPDGNLAATLECYNANAAAGVDPDFHKQPEYLAAQDKGPWAVFDLSLGRA 423 Query 415 MYAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFF 472 MY+GFT+GGL S+DG+VLR+DG+ + GLYA GACA NIAQDGKGYASGTQLGEGSFF Sbjct 424 MYSGFTMGGLTVSIDGEVLREDGSAIPGLYAAGACACNIAQDGKGYASGTQLGEGSFF 481 >gi|326383601|ref|ZP_08205287.1| hypothetical protein SCNU_11720 [Gordonia neofelifaecis NRRL B-59395] gi|326197685|gb|EGD54873.1| hypothetical protein SCNU_11720 [Gordonia neofelifaecis NRRL B-59395] Length=497 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/482 (73%), Positives = 396/482 (83%), Gaps = 0/482 (0%) Query 4 DIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAG 63 D+P V+A + +SD VDV VIG GI G CAAV AAAAGA VLVLER+AAAGGTT +AG Sbjct 5 DLPEIVNASDIAEYSDTVDVLVIGAGIGGCCAAVEAAAAGASVLVLERSAAAGGTTCMAG 64 Query 64 GHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGLGFQ 123 GHFYLGGGT VQ ATGH DS EEM KY+ AVS EP+ +KI+AYCD SVEHF+WLE LGFQ Sbjct 65 GHFYLGGGTAVQQATGHADSAEEMAKYITAVSLEPEPEKIKAYCDDSVEHFDWLESLGFQ 124 Query 124 FERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLL 183 FERSY+P KAVIQP T+GLMFTGNEKVWPF E AVPAPRGHKVPVPGDTGGA MVI+LL+ Sbjct 125 FERSYYPEKAVIQPQTQGLMFTGNEKVWPFKEQAVPAPRGHKVPVPGDTGGAGMVIELLV 184 Query 184 KRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNPDMV 243 KR L + IRYE GA L+VD G V G WK E G I+A SV+IAAGGFVMNPDMV Sbjct 185 KRLGELNVPIRYEVGARRLVVDRDGDVVGASWKAGKEEGFIRASSVVIAAGGFVMNPDMV 244 Query 244 AKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVNK 303 A+Y P+LAEKPF LG+TYDDGLGIR+G S G +HMDQ FITAP YPPS+LLTG++VNK Sbjct 245 AEYVPQLAEKPFTLGSTYDDGLGIRMGASVGAGLKHMDQAFITAPVYPPSVLLTGLVVNK 304 Query 304 LGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEMEAAL 363 +RFVAEDSYHSRT+GF+M+Q D AAYLIVDEAH+E P+ PL P IDGWETV EM L Sbjct 305 EAKRFVAEDSYHSRTSGFVMDQTDRAAYLIVDEAHMERPEFPLAPFIDGWETVAEMADGL 364 Query 364 GIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFTLGG 423 G+ L ATLDRYN YAA+G DPDFHK EFLAAQDNGPW AFDMSLGKA+YAGFT+GG Sbjct 365 GLDRDTLQATLDRYNEYAAKGEDPDFHKSAEFLAAQDNGPWAAFDMSLGKALYAGFTVGG 424 Query 424 LATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHAAAR 483 +ATSVDGQVL + G+V+AGLYA GACA+N+AQDGKGYASGTQLGEGS+FGRRAG HAA Sbjct 425 MATSVDGQVLSEAGSVIAGLYAAGACAANLAQDGKGYASGTQLGEGSYFGRRAGRHAARS 484 Query 484 AQ 485 A+ Sbjct 485 AR 486 >gi|343925411|ref|ZP_08764931.1| hypothetical protein GOALK_045_00520 [Gordonia alkanivorans NBRC 16433] gi|343764677|dbj|GAA11857.1| hypothetical protein GOALK_045_00520 [Gordonia alkanivorans NBRC 16433] Length=491 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/482 (70%), Positives = 399/482 (83%), Gaps = 0/482 (0%) Query 2 STDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTAL 61 ST+IP TV+ E+VT +SD+VDV VIGFGIAGGCAA AAA GARVL++ERAAAAGGTT+L Sbjct 4 STEIPETVALESVTEFSDEVDVVVIGFGIAGGCAAAEAAANGARVLLIERAAAAGGTTSL 63 Query 62 AGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGLG 121 +GG FYLGGGT VQ ATG DSPEEM KYL AVS +P+ DKI AYC SV+HFNWLEGLG Sbjct 64 SGGFFYLGGGTAVQKATGQDDSPEEMEKYLTAVSIDPEADKIHAYCVDSVDHFNWLEGLG 123 Query 122 FQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDL 181 F FERS++P KAVIQP TEGLM+TGNEKVWPF + AVPAPRGHKVPVPG+TGGA++VIDL Sbjct 124 FTFERSFYPEKAVIQPGTEGLMYTGNEKVWPFKDQAVPAPRGHKVPVPGETGGASLVIDL 183 Query 182 LLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNPD 241 L+KR LG+++RYETGA +L+VD G V GV WKR E G I+A SVIIAAGGFVMNP+ Sbjct 184 LVKRLGELGVEVRYETGARQLVVDSDGTVAGVTWKRPGEEGVIRATSVIIAAGGFVMNPE 243 Query 242 MVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIV 301 MVA++TP LAEKPFVLGNTYDDGLG+R+G S G ++MD+ FITAP YPP+ ++ G+IV Sbjct 244 MVAEHTPHLAEKPFVLGNTYDDGLGLRMGRSVGAELKYMDKAFITAPIYPPASMVMGVIV 303 Query 302 NKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEMEA 361 NK G+RFV EDSYH+RT+GFI+EQPDS AYLIVDE+H+ L+ IDG+E++ EMEA Sbjct 304 NKFGERFVTEDSYHARTSGFILEQPDSTAYLIVDESHMNQEHNYLIKFIDGYESIAEMEA 363 Query 362 ALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFTL 421 ALGIP GNL T+ RYN AA+ DPDFHK EFL QD GPW +D+SLGKA+YAGFT+ Sbjct 364 ALGIPEGNLQQTMARYNENAAKKEDPDFHKAAEFLEPQDKGPWAVYDLSLGKAVYAGFTM 423 Query 422 GGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHAA 481 GG+ATS+DG+VL + G+V+ GLYA GA A+NIAQD KGY SGTQLGEGS+FGRRAG HAA Sbjct 424 GGMATSLDGEVLDESGSVIKGLYAAGASATNIAQDCKGYCSGTQLGEGSYFGRRAGRHAA 483 Query 482 AR 483 A+ Sbjct 484 AK 485 >gi|119714563|ref|YP_921528.1| hypothetical protein Noca_0296 [Nocardioides sp. JS614] gi|119535224|gb|ABL79841.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Nocardioides sp. JS614] Length=493 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/470 (71%), Positives = 387/470 (83%), Gaps = 1/470 (0%) Query 3 TDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALA 62 TDIPA + AE + + DV V+GFGIAGGCAA+ AA AGARVL+LERAA GGT++L+ Sbjct 5 TDIPAVLPAELLAD-APSYDVVVVGFGIAGGCAALEAARAGARVLLLERAAVHGGTSSLS 63 Query 63 GGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGLGF 122 GGHFYLGGGT VQ+ATGH D+PEEMYKYLVAVS+EP+HDKIRAYC+GSVEHF+WLE LGF Sbjct 64 GGHFYLGGGTAVQVATGHDDTPEEMYKYLVAVSKEPEHDKIRAYCEGSVEHFDWLEALGF 123 Query 123 QFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLL 182 +FER+Y+P KAVIQP TEGLM+TGNEKVWP+ E A PAPRGHKVPVPGDT G MV+DLL Sbjct 124 EFERTYYPEKAVIQPGTEGLMYTGNEKVWPYREQARPAPRGHKVPVPGDTEGTRMVMDLL 183 Query 183 LKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNPDM 242 +R G+++RYETGAT L+ DG+G V G+ W+ F ETG + A V+IAAGGFVMNPDM Sbjct 184 HERVEEAGVEVRYETGATNLVADGSGTVRGLAWRSFEETGYVAAAGVVIAAGGFVMNPDM 243 Query 243 VAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVN 302 VA +TP+LAEKPF LG+TYDDGLGIRLG SAG +HMD+ FITAP YPPS L+TG +VN Sbjct 244 VAAHTPRLAEKPFTLGSTYDDGLGIRLGASAGAELKHMDEPFITAPFYPPSALVTGFLVN 303 Query 303 KLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEMEAA 362 KLG+RF AEDSYHSRT+ F+MEQPDS AYLIVD H+E+PK PLVPLIDG+ET+ E+E A Sbjct 304 KLGERFCAEDSYHSRTSQFVMEQPDSTAYLIVDSEHVEYPKFPLVPLIDGFETISELEDA 363 Query 363 LGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFTLG 422 L +P G++A TL+RYN A G D DFHK PE+LA Q GPW FD+ LG AMYAGFTLG Sbjct 364 LELPAGSVAKTLERYNELAEAGEDADFHKAPEWLAPQGAGPWAVFDLRLGHAMYAGFTLG 423 Query 423 GLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFF 472 GL SVDG+V R DG+V+ GLYA GACASNIAQDGKGY SGTQLGEGSFF Sbjct 424 GLRVSVDGEVERPDGSVIPGLYAAGACASNIAQDGKGYCSGTQLGEGSFF 473 >gi|262204363|ref|YP_003275571.1| fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein [Gordonia bronchialis DSM 43247] gi|262087710|gb|ACY23678.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Gordonia bronchialis DSM 43247] Length=495 Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/471 (71%), Positives = 387/471 (83%), Gaps = 0/471 (0%) Query 2 STDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTAL 61 ST+IP TV+ +VT +SD+VDV VIGFGIAGGCAA AAA GARVL+LERAAAAGGTT++ Sbjct 4 STEIPETVALSSVTEFSDEVDVVVIGFGIAGGCAAAEAAAHGARVLLLERAAAAGGTTSM 63 Query 62 AGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGLG 121 AGG FYLGGGT VQ+ATG DS EEM KYL AVS +P+ DKI AYC SV+HF WLE LG Sbjct 64 AGGFFYLGGGTPVQVATGQEDSAEEMAKYLTAVSVDPELDKIEAYCTDSVDHFTWLESLG 123 Query 122 FQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDL 181 F FERS++P KAVIQP TEGLM+TGNEKVWPF ++A PAPRGHKVPVPGDTGGA++VIDL Sbjct 124 FAFERSFYPEKAVIQPGTEGLMYTGNEKVWPFKDMAHPAPRGHKVPVPGDTGGASLVIDL 183 Query 182 LLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNPD 241 L+KR A LG ++RY+TGA +L++D G V GV+WKR E G I+A+SVIIAAGGFVMNPD Sbjct 184 LVKRLAELGAEVRYDTGARQLVLDDDGAVAGVVWKRPGEEGVIRARSVIIAAGGFVMNPD 243 Query 242 MVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIV 301 MVA TP LAEKPFVLGNTYDDGLG+R+G S G ++MD+ FITAP YPP+ ++TGIIV Sbjct 244 MVAANTPHLAEKPFVLGNTYDDGLGLRMGKSVGAELKYMDKAFITAPIYPPASMVTGIIV 303 Query 302 NKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEMEA 361 N+ G RFV EDSYH+RT+GF+MEQPD+ AYLIVDE+H+ + LVPLIDGWETV EME Sbjct 304 NRDGDRFVTEDSYHARTSGFVMEQPDAVAYLIVDESHMNPDRNYLVPLIDGWETVEEMER 363 Query 362 ALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFTL 421 LGIP G L ATL RYN AA G DPDFHK EFL QD GPW A+++SLGKAMYAGFT+ Sbjct 364 DLGIPEGKLVATLKRYNENAANGEDPDFHKAAEFLEPQDTGPWAAYNLSLGKAMYAGFTM 423 Query 422 GGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFF 472 GG+ATSVDG+VL D G V+ GLYA GA ASNIAQD KGY SGTQLGEGS+F Sbjct 424 GGMATSVDGEVLDDAGRVIEGLYAAGASASNIAQDCKGYCSGTQLGEGSYF 474 >gi|311744214|ref|ZP_07718018.1| succinate dehydrogenase [Aeromicrobium marinum DSM 15272] gi|311312387|gb|EFQ82300.1| succinate dehydrogenase [Aeromicrobium marinum DSM 15272] Length=510 Score = 584 bits (1505), Expect = 1e-164, Method: Compositional matrix adjust. Identities = 299/486 (62%), Positives = 364/486 (75%), Gaps = 4/486 (0%) Query 2 STDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTAL 61 S +IP VSA V +WSD+VDV V+G G+AG AA+ AA AGARVLV++R T+A+ Sbjct 6 SLEIPEVVSARDVPAWSDEVDVLVVGAGMAGTAAAIEAARAGARVLVIDRGGRLSCTSAM 65 Query 62 AGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGLG 121 AGGHFYLGGGT VQ A G D+PE+M YL AV+ + D +KIR Y + SVEHF WLEGLG Sbjct 66 AGGHFYLGGGTPVQQAAGFEDTPEQMAAYLAAVAPDCDPEKIRVYSEDSVEHFGWLEGLG 125 Query 122 FQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDL 181 F+FERSY+P KA IQP T+G+MF+GNEK+WPF E+AVPAPRGHK PV GD GGA++V++L Sbjct 126 FEFERSYYPEKAAIQPGTQGVMFSGNEKLWPFCEIAVPAPRGHKPPVEGDMGGASLVLEL 185 Query 182 LLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNPD 241 L LG+++RYETGAT L+V+ V G WKRF E+GAI+A +V+IAAGGFVMNPD Sbjct 186 ALTALDDLGVEVRYETGATALVVEAD-TVVGATWKRFGESGAIRAGAVVIAAGGFVMNPD 244 Query 242 MVAKYTPKLA---EKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTG 298 MV + P L E+ LGNTYDDGLGIRLG S GGA HM++ F+TAP YPP L+ G Sbjct 245 MVHAFAPPLEALLERGMALGNTYDDGLGIRLGQSVGGAADHMEEAFLTAPFYPPGDLVKG 304 Query 299 IIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVE 358 I VN G+RFVAEDSYHSRT+ F+ +QPD A+L++D AH+ P L PL+DGW+TV E Sbjct 305 ICVNNRGERFVAEDSYHSRTSAFVFDQPDQQAWLVLDSAHIAEPSYGLQPLVDGWDTVAE 364 Query 359 MEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAG 418 MEA LG+P G+LA TLD YNA A GADP F K E + D P+GA+D++ G+ Y+G Sbjct 365 MEAGLGVPEGSLAQTLDAYNAAARDGADPAFRKAAEHVVPLDQPPYGAYDLTPGRCFYSG 424 Query 419 FTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGA 478 FT GGL DG+VLRDD +VVAG+YA GACASNIA DG+GYASGTQLGE SFFGRRAG Sbjct 425 FTCGGLRVDHDGRVLRDDRSVVAGVYAAGACASNIAVDGRGYASGTQLGEASFFGRRAGR 484 Query 479 HAAARA 484 HAA RA Sbjct 485 HAATRA 490 >gi|333918688|ref|YP_004492269.1| putative fumarate reductase/succinate dehydrogenase [Amycolicicoccus subflavus DQS3-9A1] gi|333480909|gb|AEF39469.1| Possible fumarate reductase/succinate dehydrogenase [Amycolicicoccus subflavus DQS3-9A1] Length=486 Score = 557 bits (1436), Expect = 1e-156, Method: Compositional matrix adjust. Identities = 296/486 (61%), Positives = 352/486 (73%), Gaps = 3/486 (0%) Query 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 M+TDIP +S + V W D DV V+GFG+AG CAA++AA GA VL+LERA A+GGTTA Sbjct 1 MATDIPELMSTKDVPEWGDAADVIVVGFGVAGACAAIAAAETGADVLLLERATASGGTTA 60 Query 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 L G YLGGGT VQ ATG D EM +Y+ AV+ EPD +KIR YC+GSV HF+WLE L Sbjct 61 LCAGQIYLGGGTPVQEATGIIDDVAEMIRYIEAVTPEPDSEKIRLYCEGSVAHFSWLESL 120 Query 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 G FERS++ GKAV QP TEGLM+TGNE WPF E A PAPRGHKV PG+TGGA + + Sbjct 121 GVPFERSFYAGKAVYQPGTEGLMWTGNELTWPFREQAKPAPRGHKVAAPGETGGAEL-MR 179 Query 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGA-IKAKSVIIAAGGFVMN 239 +L K SL I+++YET L+ D G V GV +R S+ A ++A SV++AAGGFV+N Sbjct 180 ILTKHIESLPIRVQYETTVRNLVADADGHVVGVHVRRLSDGPAFLRAGSVVLAAGGFVVN 239 Query 240 PDMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGI 299 +M+A YTP+L LG DDGLGIRLG SAGG HM+ F+TA YPP +L GI Sbjct 240 TEMIAAYTPRLVSGFMPLGTPGDDGLGIRLGQSAGGVPIHMEGAFMTAAFYPPPQMLNGI 299 Query 300 IVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVPLIDGWETVVEM 359 IVN+ G RFVAEDSYH RTAG ++EQP++ AYLI+D P++PL P IDGWE++ EM Sbjct 300 IVNEAGHRFVAEDSYHGRTAGAVLEQPNARAYLILDAETTAWPEIPLAPFIDGWESIDEM 359 Query 360 EAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGF 419 E ALGIPPGNLA TLD YN AA+G DPDFHK P++L D GPW AFD+SLGKA Y GF Sbjct 360 ELALGIPPGNLATTLDDYNTSAAKGDDPDFHKHPDWLKPLDAGPWAAFDLSLGKAAYVGF 419 Query 420 TLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAH 479 TLGGL TS DG+VL G V GLYA GACASNIAQD GYASGT +GEGSFFGRRAG H Sbjct 420 TLGGLRTSPDGEVLT-AGGPVPGLYAAGACASNIAQDCSGYASGTCVGEGSFFGRRAGRH 478 Query 480 AAARAQ 485 AAA + Sbjct 479 AAASVR 484 >gi|15841287|ref|NP_336324.1| hypothetical protein MT1865 [Mycobacterium tuberculosis CDC1551] gi|13881516|gb|AAK46138.1| hypothetical protein MT1865 [Mycobacterium tuberculosis CDC1551] Length=466 Score = 495 bits (1275), Expect = 7e-138, Method: Compositional matrix adjust. Identities = 245/247 (99%), Positives = 245/247 (99%), Gaps = 0/247 (0%) Query 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA Sbjct 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 Query 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL Sbjct 61 LAGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGL 120 Query 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID Sbjct 121 GFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVID 180 Query 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMNP 240 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVM Sbjct 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKSVIIAAGGFVMTX 240 Query 241 DMVAKYT 247 DMVAKYT Sbjct 241 DMVAKYT 247 >gi|339328197|ref|YP_004687889.1| fumarate reductase flavoprotein subunit [Cupriavidus necator N-1] gi|338170798|gb|AEI81851.1| fumarate reductase flavoprotein subunit [Cupriavidus necator N-1] Length=487 Score = 424 bits (1090), Expect = 2e-116, Method: Compositional matrix adjust. Identities = 230/476 (49%), Positives = 296/476 (63%), Gaps = 4/476 (0%) Query 9 VSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYL 68 V + W DV V+G GIAG CAA+ A GA VL++ERA+ GG +A++ G FYL Sbjct 8 VKQSGIGRWDRSADVVVVGQGIAGACAALEARRGGAEVLIIERASGGGGASAISAGVFYL 67 Query 69 GGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGLGFQFERSY 128 GGGT VQ A G+ DS + M ++L+A + P+ + +R +C+ SVEHF+WLE G FERS Sbjct 68 GGGTDVQKACGYEDSADNMARFLMANTEHPNDELVRLFCNHSVEHFHWLESQGVPFERSG 127 Query 129 FPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLLKRAAS 188 +PGK P TE L TGNEKVWP+ E+A P PRGHK G A+ + LL + A Sbjct 128 YPGKVFFPPGTECLYSTGNEKVWPYREIAEPVPRGHKAAGA-GETGGAVAMHALLAKCAE 186 Query 189 LGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKS-VIIAAGGFVMNPDMVAKYT 247 GI Y++ T L+V+ G VTGV ++ + I+A+ VI+A GG MN M ++ Sbjct 187 EGIPALYDSRVTALVVNEAGHVTGVRVRQTTGDLHIEARRGVILATGGLNMNEAMAREHI 246 Query 248 PKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVNKLGQR 307 L++ +G Y+DG+GI LG S G A MD + TAP YPP L+ GIIVN+ G+R Sbjct 247 ALLSDTSIPIGIPYNDGIGIVLGQSVGAAVAAMDGVMATAPIYPPEQLIKGIIVNRNGER 306 Query 308 FVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLV--PLIDGWETVVEMEAALGI 365 FVAED+YH RTA F MEQP AYLIVD +P+M LIDGWETV EME ALG+ Sbjct 307 FVAEDAYHGRTAQFTMEQPGQTAYLIVDAEIFAYPEMTTARHALIDGWETVQEMEKALGM 366 Query 366 PPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFTLGGLA 425 P G L T+ YN AA G D FHKQ +++ D GP+ AFD+S K+ Y TLGGL Sbjct 367 PTGALQKTMAAYNRDAAAGEDNQFHKQGDWIKPLDVGPYAAFDISFTKSAYVYMTLGGLE 426 Query 426 TSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHAA 481 T + G+ L G + GLY VGACA++I + GK YASG L GSFFGRRAG HA+ Sbjct 427 TGIHGEALDAAGRPIQGLYVVGACAAHIPRSGKSYASGLSLAPGSFFGRRAGRHAS 482 >gi|146275714|ref|YP_001165874.1| fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein [Novosphingobium aromaticivorans DSM 12444] gi|145322405|gb|ABP64348.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Novosphingobium aromaticivorans DSM 12444] Length=491 Score = 402 bits (1033), Expect = 8e-110, Method: Compositional matrix adjust. Identities = 224/482 (47%), Positives = 293/482 (61%), Gaps = 5/482 (1%) Query 4 DIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAG 63 DIP + V W +VDV V G G+AG CAA+ A AGA VL++ERA+ GG +AL+ Sbjct 6 DIPQVIRPADVADWEREVDVIVAGQGVAGTCAALEAHRAGAEVLIVERASGGGGASALSS 65 Query 64 GHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGLGFQ 123 G FYLGGGT VQ A G+ D E++ +L+A D + A+ + +HF+WLE G Sbjct 66 GIFYLGGGTAVQQAAGYDDDAEQLAAFLLASCDPLDPNAALAFANDCKDHFDWLEAQGVP 125 Query 124 FERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLL 183 FER+Y+ GKAV +T LM+TGNEK WP+ E A PAPRGHKV G+ GAA + LL Sbjct 126 FERTYYGGKAVWLDDTTCLMWTGNEKAWPYREAARPAPRGHKVAGMGENAGAAG-MKPLL 184 Query 184 KRAASLGIQIRYETGATELIV-DGTGKVTGVMWKRFSETGAIKAKS-VIIAAGGFVMNPD 241 +R + GI Y++ L+ + G+V GV ++ ++A+ VI+A G M Sbjct 185 ERCEAEGIAAIYDSAVIALVQEEADGRVVGVKVRQPGREFFVRARRGVIVACGSHNMCEP 244 Query 242 MVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIV 301 ++ ++ P L E LG +DG G+RLG+SAG MD + TA YPP L+ GIIV Sbjct 245 LIKEHLPLLTETSEPLGIPSNDGAGVRLGLSAGAHAVAMDGVIPTASIYPPGQLIKGIIV 304 Query 302 NKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVP--LIDGWETVVEM 359 N+ G+RFVAED YH R F+MEQP AYLIVD +P+ PL L+DGWETV EM Sbjct 305 NRNGERFVAEDVYHGRLGNFVMEQPGQTAYLIVDSEVFAYPENPLAKHTLVDGWETVEEM 364 Query 360 EAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGF 419 EA LG+P G+L T+ YNA AARG D F K P++L D GP+ AFD+S K+ Y Sbjct 365 EAGLGLPAGSLVETMRTYNADAARGHDARFRKHPDWLKPLDVGPFAAFDISFDKSHYLFI 424 Query 420 TLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAH 479 TLGG+ T G+ L + GLY VGA A++I + GK YASG LG GS+FGRRAG H Sbjct 425 TLGGIKTDATGRALDLHSNAIPGLYVVGASAAHIPRTGKAYASGLSLGPGSYFGRRAGRH 484 Query 480 AA 481 A Sbjct 485 VA 486 >gi|334140851|ref|YP_004534057.1| fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein [Novosphingobium sp. PP1Y] gi|333938881|emb|CCA92239.1| fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein [Novosphingobium sp. PP1Y] Length=489 Score = 395 bits (1015), Expect = 9e-108, Method: Compositional matrix adjust. Identities = 222/483 (46%), Positives = 300/483 (63%), Gaps = 4/483 (0%) Query 2 STDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTAL 61 + +PAT++ + V +W +VDV V+G G+AG CAA+ A AGA VL++ERA+ GG +A+ Sbjct 3 AAQVPATIAPDAVDAWEREVDVVVVGQGVAGTCAALEAHRAGADVLIVERASGGGGASAM 62 Query 62 AGGHFYLGGGTTVQLATGHPDSPEEMYKYLVAVSREPDHDKIRAYCDGSVEHFNWLEGLG 121 + G FYLGGGT VQ A G+ DS E+M ++L+A D + A+C S +HF+WLE G Sbjct 63 SSGIFYLGGGTAVQGAAGYEDSAEDMARFLMASCDPLDPNATLAFCRDSKDHFDWLEEQG 122 Query 122 FQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDL 181 FER+YFPGKAV ++ LM+TGNEK WP+ E A PAPRGHKV G+ G+ + Sbjct 123 VPFERTYFPGKAVYLLDSTCLMWTGNEKAWPYREAAKPAPRGHKVVGQGENAGSEG-MKP 181 Query 182 LLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKS-VIIAAGGFVMNP 240 LL+R I Y++ L+ D +V GV K+ + T +KA+ VIIA G + Sbjct 182 LLQRCIDEEIPAIYDSAVIALVQDAEKRVVGVQVKQSTGTSFVKARRGVIIACGSHNLCK 241 Query 241 DMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGII 300 +++ ++ P L E L +DG G+RLG+SAG MD + T YPP L+ GI+ Sbjct 242 ELLDEHLPLLTETSEPLAIPSNDGAGVRLGMSAGAYAVAMDGLIPTGSIYPPGQLIKGIV 301 Query 301 VNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPKMPLVP--LIDGWETVVE 358 VN+ G+RFVAED YH R F+MEQP AYLI+D +P+ P L+DGWET+ E Sbjct 302 VNRNGERFVAEDVYHGRLGNFVMEQPGQTAYLILDSEVFAYPENPFAKHQLVDGWETIEE 361 Query 359 MEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAG 418 MEA L +P G+L T+ YN AA+G DP FHK ++L D GP+ AFD+S K+ Y Sbjct 362 MEAGLNLPTGSLVRTMSEYNRGAAKGEDPRFHKHADWLKPLDVGPYAAFDISFDKSTYLF 421 Query 419 FTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGA 478 TLGG+ T G+ L V+ GLY VGA A++I + GK YASG LG GS+FGRRAG Sbjct 422 ITLGGIKTDEQGRALDLRSNVIPGLYVVGASAAHIPRTGKAYASGLSLGPGSYFGRRAGR 481 Query 479 HAA 481 HAA Sbjct 482 HAA 484 >gi|329897340|ref|ZP_08272041.1| fumarate reductase/succinate dehydrogenase flavoprotein [gamma proteobacterium IMCC3088] gi|328921231|gb|EGG28631.1| fumarate reductase/succinate dehydrogenase flavoprotein [gamma proteobacterium IMCC3088] Length=489 Score = 339 bits (870), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 201/478 (43%), Positives = 283/478 (60%), Gaps = 13/478 (2%) Query 14 VTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYLGGGTT 73 V W VDV V+GFG AG C+A++A +GA+V+++E A+ AGG+TAL+ YLGGGT Sbjct 13 VEHWDAQVDVLVVGFGAAGACSAIAAHDSGAKVMIVEAASDAGGSTALSSAELYLGGGTR 72 Query 74 VQLATGHPDSPEEMYKYLVAVSREPDH--DKIRAYCDGSVEHFNWLEGLGFQFERSYFPG 131 VQ A G+ D+ + MY YL+ +S P +K R YCD SVEHF+WL G F+ S +PG Sbjct 73 VQKAVGYEDTADAMYDYLM-MSNAPQASAEKTRRYCDESVEHFDWLVEQGVPFKDSEYPG 131 Query 132 KAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLLKRAASLGI 191 +A++ + L+FTG+EK WPF + APRGH + V GD GG + + ++ + A GI Sbjct 132 RAMMALTDDCLLFTGSEKAWPFKDHIPAAPRGHNLYVEGDNGGP-LFMKIMAEAVAKRGI 190 Query 192 QIRYETGATELIV---DGTGKVTGVMWKRFSETGAIKA-KSVIIAAGGFVMNPDMVAKYT 247 + R+ET +LIV DG +V G + ++ + ++A + V++ GGFVMN DMV +Y Sbjct 191 EQRFETRVLKLIVSTEDGVTRVCGAVIRQDMQEKFVEATQGVMLCCGGFVMNEDMVKQYA 250 Query 248 PKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVNKLGQR 307 P+L + +GN D G GI++G+S GGA +M + F++ P YPP+ L GI+VN GQR Sbjct 251 PELLKASVPIGNPNDTGSGIQMGMSVGGAVINMHEGFVSLPYYPPATLTYGILVNAQGQR 310 Query 308 FVAEDSYHSRTAGFIMEQPDSAAYLIV---DEAHLEHPKMPLVPLIDGWETVVEMEAALG 364 F+ ED+YH R + Q Y ++ D E P+ ETV E+ A L Sbjct 311 FINEDAYHGRVGAACLRQVGGPVYFVMNVEDYEGYETQSYLGSPIGGTGETVDELAAELN 370 Query 365 IPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGK-AMYAGFTLGG 423 +P G L ++ +N +A G DP FHK +L + P A D + G Y FTLGG Sbjct 371 LPEGQLQNCIETFNRFAKEGQDPLFHKDAAWLKPLEP-PLVALDCTPGNGTFYPYFTLGG 429 Query 424 LATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHAA 481 L T+VDGQVL G V+ GLYA G A + + G GYASG+ +G+ SF GR AG H A Sbjct 430 LDTTVDGQVLTAGGEVIPGLYAAGRTACGVPRRGDGYASGSSVGDASFSGRVAGLHIA 487 >gi|170701410|ref|ZP_02892369.1| Succinate dehydrogenase [Burkholderia ambifaria IOP40-10] gi|170133689|gb|EDT02058.1| Succinate dehydrogenase [Burkholderia ambifaria IOP40-10] Length=498 Score = 339 bits (869), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 212/482 (44%), Positives = 286/482 (60%), Gaps = 8/482 (1%) Query 9 VSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYL 68 ++ V W + DV +IGFG AG CAA+ AA AGA L++ERA++ GGT+AL+GG YL Sbjct 11 LNVRDVHRWDAEHDVVIIGFGAAGACAAIEAARAGADTLIVERASSYGGTSALSGGEIYL 70 Query 69 GG--GTTVQLATGHPDSPEEMYKYL-VAVSREPDHDKIRAYCDGSVEHFNWLEGLGFQFE 125 GG GT Q G D E++Y+YL +A R+ D K+R Y + S+ H +WL G ++ Sbjct 71 GGSGGTPAQRLAGFSDDTEDLYRYLMLAGGRDADEAKVRLYANESLAHHDWLAAQGLTYK 130 Query 126 RSYFPGKAVIQPNTEG-LMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLLK 184 + F + +++P T+ L+++G+E+ WPF E A P PRGH PG GG M++ +L Sbjct 131 NT-FIAERIVEPETDDCLIWSGSEEAWPFSEAATPCPRGHTPQWPG-WGGGQMLMRVLAG 188 Query 185 RAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAK-SVIIAAGGFVMNPDMV 243 R +LG+ RY+T A LIVD G V GV+ + + ET ++A+ +VI+ AGGF MN DMV Sbjct 189 RVQALGVSTRYDTRALALIVDDAGAVRGVVLRAYGETACVRARRAVILCAGGFAMNRDMV 248 Query 244 AKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVNK 303 K+ P+ +G+ DDG GI LG SAGGA HMDQ F++ P Y P L+ GI VN Sbjct 249 RKHAPQFLRSDEPIGSPGDDGSGILLGQSAGGAAIHMDQGFVSLPFYAPESLIYGIFVNA 308 Query 304 LGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLE-HPKMPLVPLIDGWETVVEMEAA 362 GQRF+ ED YH RT Q D YL+VD+A + P + + + ET E+E Sbjct 309 HGQRFINEDGYHGRTGHHAFHQADDRIYLLVDQASYQPPPAIARIGIAAAGETWEEVERD 368 Query 363 LGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFTLG 422 L +P G L ATLD YN +AA G DP FHK ++L P+ A D + A Y FTLG Sbjct 369 LQMPAGTLTATLDVYNRHAAEGVDPLFHKAKKWLRPLIEPPFVALDCRIDYAFYPHFTLG 428 Query 423 GLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHAAA 482 GL T GQVL VAGLYA G + + G GY+SG L + +FFGR+AG HAA Sbjct 429 GLDTLPTGQVLDAARTPVAGLYAAGRTTCGLPRWGAGYSSGLSLADATFFGRQAGRHAAR 488 Query 483 RA 484 A Sbjct 489 SA 490 >gi|78062368|ref|YP_372276.1| hypothetical protein Bcep18194_B1518 [Burkholderia sp. 383] gi|77970253|gb|ABB11632.1| Succinate dehydrogenase [Burkholderia sp. 383] Length=498 Score = 336 bits (862), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 211/489 (44%), Positives = 294/489 (61%), Gaps = 10/489 (2%) Query 1 MSTDIPAT--VSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGT 58 MS+D T ++ V W + DV ++GFG AG CAA+ AA+AGA L++ERA++ GGT Sbjct 1 MSSDYSLTHPLNTRDVHHWDAEHDVVIVGFGAAGACAAIEAASAGADTLIVERASSYGGT 60 Query 59 TALAGGHFYLGG--GTTVQLATGHPDSPEEMYKYL-VAVSREPDHDKIRAYCDGSVEHFN 115 +AL+GG YLGG GT Q G D E++Y+YL +A R+ D K+R Y + S+ H + Sbjct 61 SALSGGEIYLGGSGGTPAQRQAGFTDDTEDLYRYLMLAGGRDADDAKVRLYANESLAHHD 120 Query 116 WLEGLGFQFERSYFPGKAVIQPNTEG-LMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGG 174 WL G ++ + F + +++P T+ L+++G+E+ WPF E A P PRGH PG GG Sbjct 121 WLVAQGLTYKNT-FIAERIVEPETDDCLIWSGSEEAWPFSEAAKPCPRGHTPQWPG-WGG 178 Query 175 AAMVIDLLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAK-SVIIAA 233 M++ +L +R A+LG+ RY+T A LIVD G V GV+ + + ET ++A+ ++I+ A Sbjct 179 GQMLMRVLAERVAALGVATRYDTRALALIVDDGGTVRGVVLRAYGETAFVRARRALILCA 238 Query 234 GGFVMNPDMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPS 293 GGF MN +MV ++ P+ +G+ DDG GI LG SAGGA HMDQ F++ P Y P Sbjct 239 GGFAMNREMVRRHAPQFLRSDEPIGSPGDDGSGILLGQSAGGAAIHMDQGFVSLPFYAPE 298 Query 294 ILLTGIIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEA-HLEHPKMPLVPLIDG 352 L+ GI VN GQRF+ ED YH RT Q D YL+VD+A + E P + + + Sbjct 299 ALIKGIFVNARGQRFINEDGYHGRTGHHAFHQADDRIYLLVDQATYQEPPAIARIGIAAA 358 Query 353 WETVVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLG 412 ET E+E L +P G L AT+D YN +AA G DP FHK ++L P+ A D + Sbjct 359 GETWEEVERDLQMPAGTLTATVDVYNRHAAEGVDPLFHKAKKWLQPLIEPPFVALDCRID 418 Query 413 KAMYAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFF 472 A Y FTLGGL T GQV+ A V GLYA G + + G GY+SG L + +FF Sbjct 419 YAFYPHFTLGGLDTLPTGQVVDASRAPVPGLYAAGRTTCGLPRWGAGYSSGLSLADATFF 478 Query 473 GRRAGAHAA 481 GR+AG HAA Sbjct 479 GRQAGRHAA 487 >gi|206563425|ref|YP_002234188.1| hypothetical protein BCAM1577 [Burkholderia cenocepacia J2315] gi|198039465|emb|CAR55432.1| FAD-dependent oxidoreductase [Burkholderia cenocepacia J2315] Length=498 Score = 332 bits (852), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 212/489 (44%), Positives = 291/489 (60%), Gaps = 10/489 (2%) Query 1 MSTDIPAT--VSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGT 58 MS D T ++ V W D DV ++GFG AG CAA+ AA+AGA L++ERA++ GGT Sbjct 1 MSFDYSLTHPLNLRDVHRWDADHDVVIVGFGAAGACAAIEAASAGADTLIVERASSYGGT 60 Query 59 TALAGGHFYLGG--GTTVQLATGHPDSPEEMYKYL-VAVSREPDHDKIRAYCDGSVEHFN 115 +AL+GG YLGG GT Q G D E++Y+YL +A R+ D K+R Y + S+ H + Sbjct 61 SALSGGEIYLGGSGGTPAQRQAGFTDDTEDLYRYLMLAGGRDADDAKVRLYANESLAHHD 120 Query 116 WLEGLGFQFERSYFPGKAVIQPNTEG-LMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGG 174 WL G ++ + F + +++P T+ L+++G+E+ WPF E A P PRGH PG GG Sbjct 121 WLVAQGVTYKNT-FIAERIVEPETDDCLIWSGSEEAWPFSEAAKPCPRGHTPQWPG-WGG 178 Query 175 AAMVIDLLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAK-SVIIAA 233 +++ +L +R A+LG+ RY+T A LIVD G V GV+ + + +T ++A+ +VI+ A Sbjct 179 GQLLMRVLAERVAALGVATRYDTRAVALIVDDGGAVRGVVLRAYGDTVFVRARRAVILCA 238 Query 234 GGFVMNPDMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPS 293 GGF MN DMV ++ P+ +G+ DDG GI LG SAGGA HMD+ F++ P Y P Sbjct 239 GGFAMNRDMVRRHAPQFLRSDEPIGSPGDDGSGILLGQSAGGAAIHMDEGFVSLPFYAPE 298 Query 294 ILLTGIIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEA-HLEHPKMPLVPLIDG 352 L+ GI VN GQRFV ED YH RT Q D YL+VD A + E P + + + Sbjct 299 ALIKGIFVNARGQRFVNEDGYHGRTGHHAFHQADDRIYLLVDHATYQEPPAIARIGIAAA 358 Query 353 WETVVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLG 412 ET E+E L +P G L AT+D YN +AA G DP FHK ++L P+ A D + Sbjct 359 GETWEEVERDLRMPAGTLTATVDVYNRHAADGVDPLFHKAKQWLQPLIEPPFVALDCRID 418 Query 413 KAMYAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFF 472 A Y FTLGGL T GQVL V GLYA G + + G GY+SG L + +FF Sbjct 419 YAFYPHFTLGGLDTLPTGQVLDATRTPVPGLYAAGRTTCGLPRWGAGYSSGLSLADATFF 478 Query 473 GRRAGAHAA 481 GR+AG HAA Sbjct 479 GRQAGRHAA 487 >gi|312138806|ref|YP_004006142.1| fumarate reductase/succinate dehydrogenase [Rhodococcus equi 103S] gi|311888145|emb|CBH47457.1| putative fumarate reductase/succinate dehydrogenase [Rhodococcus equi 103S] Length=480 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 202/489 (42%), Positives = 279/489 (58%), Gaps = 27/489 (5%) Query 9 VSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYL 68 +SAE++ W + DV + G+GIAG AAV AA AGA VLVLERA GG +LAGG Y+ Sbjct 1 MSAESIDVWDYEADVVIAGYGIAGVSAAVEAARAGAEVLVLERAGGWGGAASLAGGFIYM 60 Query 69 GGGTTVQLATGHPDSPEEMYKYLV-AVSREPDHDKIRAYCDGSVEHFNWLEGLGFQFERS 127 GGGT +Q A G D+PE M +++ A+ D KI YC+GSV+H+NWL G F+ S Sbjct 61 GGGTPLQKALGFEDTPENMKTFMMAALGPGADEAKITEYCEGSVDHYNWLVDCGVPFKES 120 Query 128 YFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVP-------GDTGGAAMVID 180 ++ P +GLM++G E PF +A PAPRGH +P G+ GG M++ Sbjct 121 FYGQPGWETPFDDGLMYSGGENSAPFNTIATPAPRGH---IPQMADKKVGEKGGGYMLMK 177 Query 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKA-KSVIIAAGGFVMN 239 L++ A LG+Q +Y+ L+ D TG+V GV K++ + ++A K V++A G F N Sbjct 178 PLVETAEKLGVQAQYDMRVQTLVTDATGRVVGVQAKQYGKDVVVRASKGVVLATGSFAYN 237 Query 240 PDMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGI 299 DMV + P+L +P + DG IR+ + G HMD + A P +++ GI Sbjct 238 KDMVEAFAPRLIGRPGAAIEEH-DGRSIRMAQALGADLAHMDATEV-AFFGDPQMMVRGI 295 Query 300 IVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPK-----MPLVPLIDGW- 353 +VN GQR+V ED+Y R + Q D+ AYLI+DE E K P W Sbjct 296 LVNGRGQRYVNEDTYPGRIGQLTLLQNDNQAYLIIDEDAYEEAKTTPSSTPFFRFQPKWV 355 Query 354 -ETVVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLG 412 ETV E+EA +G+P G L AT++ YN +AA G DP K+PE++ + P A D+ Sbjct 356 AETVEELEAEMGLPEGTLQATVEVYNKHAANGQDPVLGKKPEWVKPIGS-PIAALDL--- 411 Query 413 KAMYAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFF 472 + AGFTLGGL T+ +VL G + GL+A G C + + GYASGT LG+GSFF Sbjct 412 RNFTAGFTLGGLRTNTASEVLHVSGDPIPGLFAAGRCTAGVC--AWGYASGTSLGDGSFF 469 Query 473 GRRAGAHAA 481 GRRAG AA Sbjct 470 GRRAGVSAA 478 >gi|325676494|ref|ZP_08156172.1| succinate dehydrogenase [Rhodococcus equi ATCC 33707] gi|325552672|gb|EGD22356.1| succinate dehydrogenase [Rhodococcus equi ATCC 33707] Length=493 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 202/489 (42%), Positives = 279/489 (58%), Gaps = 27/489 (5%) Query 9 VSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYL 68 +SAE++ W + DV + G+GIAG AAV AA AGA VLVLERA GG +LAGG Y+ Sbjct 14 LSAESIDVWDYEADVVIAGYGIAGVSAAVEAARAGAEVLVLERAGGWGGAASLAGGFIYM 73 Query 69 GGGTTVQLATGHPDSPEEMYKYLV-AVSREPDHDKIRAYCDGSVEHFNWLEGLGFQFERS 127 GGGT +Q A G D+PE M +++ A+ D KI YC+GSV+H+NWL G F+ S Sbjct 74 GGGTPLQKALGFEDTPENMKTFMMAALGPGADEAKITEYCEGSVDHYNWLVDCGVPFKES 133 Query 128 YFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVP-------GDTGGAAMVID 180 ++ P +GLM++G E PF +A PAPRGH +P G+ GG M++ Sbjct 134 FYGQPGWETPFDDGLMYSGGENSAPFNTIATPAPRGH---IPQMADKKVGEKGGGYMLMK 190 Query 181 LLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKA-KSVIIAAGGFVMN 239 L++ A LG+Q +Y+ L+ D TG+V GV K++ + ++A K V++A G F N Sbjct 191 PLVETAEKLGVQAQYDMRVQTLVTDATGRVVGVQAKQYGKDVVVRARKGVVLATGSFAYN 250 Query 240 PDMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGI 299 DMV + P+L +P + DG IR+ + G HMD + A P +++ GI Sbjct 251 KDMVEAFAPRLIGRPGAAIEEH-DGRSIRMAQALGADLAHMDATEV-AFFGDPQMMVRGI 308 Query 300 IVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPK-----MPLVPLIDGW- 353 +VN GQR+V ED+Y R + Q D+ AYLI+DE E K P W Sbjct 309 LVNGRGQRYVNEDTYPGRIGQLTLLQNDNQAYLIIDEDAYEEAKTTPSSTPFFRFQPKWV 368 Query 354 -ETVVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLG 412 ETV E+EA +G+P G L AT++ YN +AA G DP K+PE++ + P A D+ Sbjct 369 AETVEELEAEMGLPEGTLQATVEVYNKHAANGQDPVLGKKPEWVKPIGS-PVAALDL--- 424 Query 413 KAMYAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFF 472 + AGFTLGGL T+ +VL G + GL+A G C + + GYASGT LG+GSFF Sbjct 425 RNFTAGFTLGGLRTNTASEVLHVSGDPIPGLFAAGRCTAGVC--AWGYASGTSLGDGSFF 482 Query 473 GRRAGAHAA 481 GRRAG AA Sbjct 483 GRRAGISAA 491 >gi|40062891|gb|AAR37762.1| conserved hypothetical protein [uncultured marine bacterium 442] Length=484 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 193/473 (41%), Positives = 283/473 (60%), Gaps = 12/473 (2%) Query 14 VTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYLGGGTT 73 VTSWS + DV V+GFG AG CAA++AA GA V+++E A+A+GG+TAL+ YLGGGT Sbjct 6 VTSWSGESDVVVVGFGGAGACAAIAAADEGASVMIVEAASASGGSTALSSAEIYLGGGTK 65 Query 74 VQLATGHPDSPEEMYKYLVAVSR-EPDHDKIRAYCDGSVEHFNWLEGLGFQFERSYFPGK 132 +Q A G+ D+ E+++ YL+A +R + D K+RAY +G EH +WL LG F+ S + Sbjct 66 IQKAVGYEDNVEDVFGYLMASNRPQADASKVRAYAEGGAEHLDWLMSLGVPFKASELKER 125 Query 133 AVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLLKRAASLGIQ 192 A++ + L++TG+EK WP+ E PAPRGH + V GD GG ++ +LL++ GI Sbjct 126 AMMALTDDCLLYTGSEKAWPYCEQYTPAPRGHNLEVEGDNGGP-LLTKILLQQVEQRGID 184 Query 193 IRYETGATELIVDGTG---KVTGVMWKRFSETGAIKA-KSVIIAAGGFVMNPDMVAKYTP 248 I YET A LIV G ++ G+ ++ + +A + V++ AGGF+MN DMV +Y P Sbjct 185 IHYETRALRLIVSCHGPQQRIVGLAVRQNMQEHYFRAGRGVVLCAGGFIMNEDMVREYCP 244 Query 249 KLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVNKLGQRF 308 + + +GN D G GI++G+S GG +M + F++ P YPP+ L GI VN GQRF Sbjct 245 QFLDNKTQIGNPNDTGAGIQMGLSVGGRVINMHEGFLSLPFYPPATLTFGIFVNGQGQRF 304 Query 309 VAEDSYHSRTAGFIMEQPDSAAYLIV---DEAHLEHPKMPLVPLIDGWETVVEMEAALGI 365 + ED+YH R F++ Q YLI+ D + E P++ E++ E+ + L + Sbjct 305 INEDAYHGRIGSFLVNQ-SYPVYLILNVEDYGNYETESWLQAPVVATGESLEELVSELDL 363 Query 366 PPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGK-AMYAGFTLGGL 424 P G L T++R+N G D FHK +L + P+ A D + G A + FTLGGL Sbjct 364 PTGQLERTIERFNEDVFEGVDRLFHKDNSWLKTLE-APFVALDCTPGAGAFFPCFTLGGL 422 Query 425 ATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAG 477 T+VDG V V+ GLYA G A + + G GYASG+ +G+ +F GR AG Sbjct 423 DTTVDGAVRSVHEGVIPGLYAAGRTACGVPRRGDGYASGSSVGDATFSGRMAG 475 >gi|111022663|ref|YP_705635.1| hypothetical protein RHA1_ro05698 [Rhodococcus jostii RHA1] gi|110822193|gb|ABG97477.1| possible succinate dehydrogenase [Rhodococcus jostii RHA1] Length=490 Score = 319 bits (817), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 200/489 (41%), Positives = 283/489 (58%), Gaps = 23/489 (4%) Query 10 SAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYLG 69 SA TVT W + DV V G+GIAG A++ AA AGA VLVLER + GG ALAGG YLG Sbjct 11 SATTVTEWDYEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGAAALAGGFIYLG 70 Query 70 GGTTVQLATGHPDSPEEMYKYLV-AVSREPDHDKIRAYCDGSVEHFNWLEGLGFQFERSY 128 GGT +Q A G DSPE M +++ A+ D +KI YC+GSVEH+NWL G F+ S+ Sbjct 71 GGTPLQKACGFDDSPENMKTFMMAALGPGADEEKITDYCEGSVEHYNWLVDCGVPFKESF 130 Query 129 FPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPV-----PGDTGGAAMVIDLLL 183 + P +GLM++G E PF E+A PAPRGH VP G+ GG M++ L+ Sbjct 131 WGEPGWEPPFDDGLMYSGGENAAPFNEIATPAPRGH-VPQMDGKRTGEKGGGYMLMKPLV 189 Query 184 KRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKS-VIIAAGGFVMNPDM 242 + A LG++ Y+ L+ D TG+V G++ K++ + A++A+ V++A G F N M Sbjct 190 ETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFAYNDKM 249 Query 243 VAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVN 302 + + P+L +P + DG I + + G HMD + A P +++ GI+VN Sbjct 250 IEAHAPRLIGRPGAAIEEH-DGRSILMAQALGADLAHMDATEV-AFVCDPQLIVRGILVN 307 Query 303 KLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEH-----PKMPLVPLIDGW--ET 355 GQR+V ED+Y R + D+ A+LI+DEA E P + + W ET Sbjct 308 GRGQRYVPEDTYSGRIGQMTLFHQDNQAFLIIDEASYEEGAAATTATPFLRVQPKWAAET 367 Query 356 VVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAM 415 V E+E+ +G+P G L +T++ YN +AA G+DP HK+ E++ P A D+ + Sbjct 368 VEELESDMGLPAGALQSTVEVYNKHAAEGSDPLLHKKSEWVKPIGT-PVAALDL---RGF 423 Query 416 YAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRR 475 GFTLGGL T+V+ +VL G + GL+A G C S + GYASGT LG+GSF+GRR Sbjct 424 TLGFTLGGLRTTVNSEVLHVSGEPIPGLFAAGRCTSGVC--AGGYASGTSLGDGSFYGRR 481 Query 476 AGAHAAARA 484 AG AA +A Sbjct 482 AGISAAKQA 490 >gi|339328460|ref|YP_004688152.1| fumarate reductase flavoprotein subunit [Cupriavidus necator N-1] gi|338171061|gb|AEI82114.1| fumarate reductase flavoprotein subunit [Cupriavidus necator N-1] Length=493 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 202/482 (42%), Positives = 280/482 (59%), Gaps = 12/482 (2%) Query 14 VTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYLGGG-- 71 V W +VDV V+GFG AG CAA+ AA GA V + E A+ +GGT+AL+GG YLGGG Sbjct 16 VLQWDMEVDVIVVGFGAAGACAAIEAAQTGASVTLFEVASGSGGTSALSGGEIYLGGGGG 75 Query 72 TTVQLATGHPDSPEEMYKYLV-AVSREPDHDKIRAYCDGSVEHFNWLEGLGFQFERSYFP 130 T Q G D E++Y+YL+ A + D K+R Y +GS H++WL G ++ ++ P Sbjct 76 TPAQRQAGFIDDTEDLYRYLLMAGGPDADEAKVRIYANGSRAHYDWLVDQGLTYKNTFLP 135 Query 131 GKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLLKRAASLG 190 + + + L+++G+E+ WPF A P PRGH P GG M++D+L R LG Sbjct 136 ERMLEPETDDCLIWSGSEEAWPFSANAKPCPRGH-TPQWVGWGGGRMLMDVLAARVVKLG 194 Query 191 IQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKS-VIIAAGGFVMNPDMVAKYTPK 249 + +RY++ LI D V GV+ + +A+ V++ AGGFVMN DMV ++ P Sbjct 195 VDVRYDSRVLALIADEANNVHGVVVRINGRMLFARARRGVVLCAGGFVMNRDMVRRHAPN 254 Query 250 LAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVNKLGQRFV 309 L +G+ DDG GI +G+S GGA HMDQ F++ P Y P L+ G+ VN+ GQRF+ Sbjct 255 LLRANEPIGSPGDDGSGILMGLSVGGAAIHMDQGFVSLPFYAPESLIKGVFVNERGQRFL 314 Query 310 AEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHP----KMPLVPLIDGWETVVEMEAALGI 365 ED YH R IM+Q YL+VD A + P ++ + D WE E+E LG+ Sbjct 315 NEDCYHGRIGHHIMQQLGDRIYLLVDSATFQQPAEFTRIGIAAAGDTWE---EVERDLGM 371 Query 366 PPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFTLGGLA 425 PPG L+AT+ YN +AA GADP FHK ++L D P+ A D + A Y FTLGGL Sbjct 372 PPGTLSATVSSYNRHAAEGADPMFHKAAKWLKPLDEPPFVALDCRVDYAFYPHFTLGGLD 431 Query 426 TSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHAAARAQ 485 T GQVL + + GLYA G A + + G GY+SG L + +FFGR+AG HAA+ A Sbjct 432 TLPSGQVLTEKRVPIRGLYAAGRTACGLPRWGGGYSSGMSLADATFFGRQAGRHAASSAS 491 Query 486 GM 487 G Sbjct 492 GF 493 >gi|77361069|ref|YP_340644.1| hypothetical protein PSHAa2146 [Pseudoalteromonas haloplanktis TAC125] gi|76875980|emb|CAI87202.1| putative oxidoreductase [Pseudoalteromonas haloplanktis TAC125] Length=501 Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 188/484 (39%), Positives = 278/484 (58%), Gaps = 15/484 (3%) Query 12 ETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYLGG- 70 E+++ + DV V G+G AG AA+ A GA+V +LERA+A GG+TAL+ YLGG Sbjct 14 ESISHFDISTDVLVCGYGGAGAAAALEAVTLGAKVTILERASAGGGSTALSSCEMYLGGS 73 Query 71 -GTTVQLATGHPDSPEEMYKYLV-AVSREPDHDKIRAYCDGSVEHFNWLEGLGFQFERSY 128 GT +Q G DS E M YL A+ D DK+R Y G+ HF+W+E LG ++R+ Sbjct 74 GGTALQKELGLEDSTENMLAYLREALGPYGDEDKMRCYAQGAAGHFDWVESLGVPYKRAA 133 Query 129 FPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLLKRAAS 188 F + V+ + E L+FTGNEK PF +A P PRGH GD GG + +D +++R A Sbjct 134 FLERTVVPLSDESLLFTGNEKAHPFNTIAKPVPRGHVPSKVGDEGGK-IFMDAIMQRIAG 192 Query 189 LGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKA-KSVIIAAGGFVMNPDMVAKYT 247 G ++ + A L+VD +V GV+ KR + AI+A + V++A GGFVMN M +Y Sbjct 193 AGAEVINDCRAIALLVDKNNRVCGVIAKRDNREIAIRATRGVVLATGGFVMNDTMTRQYM 252 Query 248 PKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVNKLGQR 307 P+L E GNT+D G GI+LG + GG T +M+Q F++ P YPP+ L GI++NK GQR Sbjct 253 PELLEYCVPYGNTFDMGDGIQLGQAVGGQTINMEQAFMSFPLYPPAKLTYGILLNKHGQR 312 Query 308 FVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPK-MPLVPLIDGWETVVEMEAALGIP 366 ++ ED+Y +R A + +Q + YL+V E E + ++ +++ E+ + P Sbjct 313 YINEDAYLARLAHYSCQQAEQKFYLLVQEEDFEASHYLQRAAIVATGDSIAEVASEAPFP 372 Query 367 PGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMS---LGKAMYAG----- 418 G L T+ +N +A+ DP FHK E+L + P+ + S + + G Sbjct 373 AGILEQTVSYFNQHASNKQDPLFHKTAEWLKPLNKPPFALLEYSASEMTAVIMPGTKGPL 432 Query 419 -FTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAG 477 FTLGGL T G+V+ D +++GLYA G + + + KGYASG +G+ +FFGR AG Sbjct 433 IFTLGGLKTLTTGEVVNLDNEIISGLYAAGRATAGLPRTAKGYASGMSVGDATFFGRLAG 492 Query 478 AHAA 481 AA Sbjct 493 RSAA 496 >gi|329897950|ref|ZP_08272258.1| fumarate reductase/succinate dehydrogenase flavoprotein [gamma proteobacterium IMCC3088] gi|328920997|gb|EGG28418.1| fumarate reductase/succinate dehydrogenase flavoprotein [gamma proteobacterium IMCC3088] Length=497 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 196/498 (40%), Positives = 291/498 (59%), Gaps = 16/498 (3%) Query 1 MSTDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTA 60 MS + +S ++ S+ + DV V GFG AGG AA+ AA AGARV++ ERA+ AGG+T Sbjct 1 MSQTDFSVISLASIASFDAEADVLVCGFGGAGGSAALEAAKAGARVILYERASGAGGSTG 60 Query 61 LAGGHFYLGG--GTTVQLATGHPDSPEEMYKYL-VAVSREPDHDKIRAYCDGSVEHFNWL 117 L+ YLGG GT++Q A G DS E YL A+ D +KIR Y +G+ +HF W+ Sbjct 61 LSSCEMYLGGSGGTSLQKALGFEDSTENFIAYLEKAMGVRGDPEKIRLYAEGAADHFEWV 120 Query 118 EGLGFQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAM 177 LG ++ + + V+ E L+FTGNE+ F ++A P PRGH GD GG M Sbjct 121 RSLGVPYKEAVMLEREVVPLTDESLLFTGNERTLEFKDVAAPVPRGHVPSHEGDFGGR-M 179 Query 178 VIDLLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKA-KSVIIAAGGF 236 ID L G+ ++Y++ LI D G+V G++ K+ ++ +KA + V++ +GGF Sbjct 180 FIDALTSAVVEAGVDVQYDSRVMHLIADEAGRVVGLVVKQDNQLRYVKASRGVVLTSGGF 239 Query 237 VMNPDMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILL 296 +MN +M +Y P + GN +D G GI+LG +AGG T +MD+ F++ P YPPS L Sbjct 240 IMNDEMRKRYLPDNHKWATPYGNPFDMGDGIKLGQAAGGYTINMDEAFVSLPIYPPSKLT 299 Query 297 TGIIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHPK-MPLVPLIDGWET 355 GI+VN+ G+RFV ED+Y +R A + QP+ YL+VD + +HP + + ++ +T Sbjct 300 FGILVNQRGERFVNEDAYLARLAHYASLQPNQQLYLLVDADNFDHPMYIERLDVVATGDT 359 Query 356 VVEMEAALGI-PPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKA 414 + E+ A GI P G L T+ +N +A +G DP F K PE+L+ + GP+G D+S K Sbjct 360 IEELAAEAGIFPAGALEQTVAYFNQHAKQGVDPKFRKAPEWLSPLEKGPYGLLDLSFDKQ 419 Query 415 MYA---------GFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQ 465 FTLGGL T G+V R +G +V GLYA G + + + +GY+SG Sbjct 420 TAVIMPGTKGPLTFTLGGLDTLPTGEVKRWNGGIVEGLYAAGRVTAGLPRSSEGYSSGMS 479 Query 466 LGEGSFFGRRAGAHAAAR 483 +G+ +FFGR AG AA++ Sbjct 480 VGDATFFGRIAGRQAASQ 497 >gi|119504169|ref|ZP_01626250.1| hypothetical protein MGP2080_10473 [marine gamma proteobacterium HTCC2080] gi|119460172|gb|EAW41266.1| hypothetical protein MGP2080_10473 [marine gamma proteobacterium HTCC2080] Length=489 Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 193/477 (41%), Positives = 283/477 (60%), Gaps = 12/477 (2%) Query 14 VTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYLGGGTT 73 VTSWS + DV V+GFG AG CAA++AA GA V+++E A+A+GG+TAL+ YLGGGT Sbjct 11 VTSWSGESDVVVVGFGGAGACAAIAAADEGASVMIVEAASASGGSTALSSAEIYLGGGTK 70 Query 74 VQLATGHPDSPEEMYKYLVAVS-REPDHDKIRAYCDGSVEHFNWLEGLGFQFERSYFPGK 132 +Q A G+ DS E+++ YL+A + + D K+RAY +G EH +WL LG F+ S + Sbjct 71 IQKAVGYEDSVEDVFGYLMASNGPQADASKVRAYAEGGAEHLDWLMSLGVPFKASELKER 130 Query 133 AVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLLKRAASLGIQ 192 A++ + L++TG+EK WP+ E PAPRGH + V GD GG ++ +LL++ GI Sbjct 131 AMMALTDDCLLYTGSEKAWPYCEQYKPAPRGHNLEVEGDNGGP-LLTKILLQQVEQRGID 189 Query 193 IRYETGATELIVDGTG---KVTGVMWKRFSETGAIKA-KSVIIAAGGFVMNPDMVAKYTP 248 I YET A LIV G ++ G+ ++ + +A + V++ AGGF+MN DMV +Y P Sbjct 190 IHYETRALRLIVSCHGPQQRIVGLAVRQNMQEHYFRAGRGVVLCAGGFIMNEDMVREYCP 249 Query 249 KLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVNKLGQRF 308 + + +GN D G GI++G+S GG +M + F++ P YPP+ L GI VN GQRF Sbjct 250 QFLDNKTQIGNPNDTGTGIQMGLSVGGRVINMHEGFLSLPFYPPATLTFGIFVNGQGQRF 309 Query 309 VAEDSYHSRTAGFIMEQPDSAAYLIV---DEAHLEHPKMPLVPLIDGWETVVEMEAALGI 365 + ED+YH R F++ Q YLI+ D + E P++ E++ E+ + L + Sbjct 310 INEDAYHGRIGSFLVNQ-SYPVYLILNVEDYGNYETESWLQAPVVATGESLEELVSELDL 368 Query 366 PPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGK-AMYAGFTLGGL 424 P G L T++R+N + D FHK +L + P+ A D + G A + FTLGGL Sbjct 369 PTGQLERTIERFNEDVSERVDRLFHKDISWLKTLE-APFVALDCTPGAGAFFPCFTLGGL 427 Query 425 ATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHAA 481 T+VDG V V+ GLYA G A + + G GYASG+ +G+ +F GR AG A Sbjct 428 DTTVDGAVRSVHEGVIPGLYAAGRTACGVPRRGDGYASGSSVGDATFSGRMAGRSVA 484 >gi|73541349|ref|YP_295869.1| hypothetical protein Reut_A1659 [Ralstonia eutropha JMP134] gi|72118762|gb|AAZ61025.1| Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal:FAD dependent oxidoreductase [Ralstonia eutropha JMP134] Length=493 Score = 314 bits (804), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 204/480 (43%), Positives = 281/480 (59%), Gaps = 12/480 (2%) Query 13 TVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYLGGG- 71 V W + DV V+GFG AG CAA+ AA AGA V + E A+ +GGT+AL+GG YLGGG Sbjct 15 NVPQWDMETDVVVVGFGAAGACAAIEAAQAGAVVTLFEVASGSGGTSALSGGEIYLGGGG 74 Query 72 -TTVQLATGHPDSPEEMYKYLV-AVSREPDHDKIRAYCDGSVEHFNWLEGLGFQFERSYF 129 T Q G D E++Y+YL+ A + D K+R Y DGS H++WL G ++ +Y Sbjct 75 GTPAQQQAGFVDDTEDLYRYLLMAGGPDADEPKVRTYADGSRAHYDWLVEQGLTYKNTYL 134 Query 130 PGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLLKRAASL 189 P + + + L+++G+E+ WPF A P PRGH P GG M++D+L R L Sbjct 135 PERMLEPETDDCLIWSGSEEAWPFSGNAKPCPRGH-TPQWAGWGGGRMLMDVLAARVVKL 193 Query 190 GIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKS-VIIAAGGFVMNPDMVAKYTP 248 G+ +RY++ LI D V GV+ + +T +A+S V++ AGGFVMN DMV ++ P Sbjct 194 GVDVRYDSRVLALIADEANNVHGVVVRINGQTRYARARSGVVLCAGGFVMNRDMVRRHAP 253 Query 249 KLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVNKLGQRF 308 L +G+ DDG GI +G+S GGA HMDQ F++ P Y P L+ G+ VN+ GQRF Sbjct 254 GLLRANEPIGSPGDDGSGILMGISVGGAAIHMDQGFVSLPFYAPESLIKGVFVNERGQRF 313 Query 309 VAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHP----KMPLVPLIDGWETVVEMEAALG 364 + ED YH R IM+Q YL+VD A + P ++ + D WE E+E LG Sbjct 314 INEDCYHGRIGHHIMQQLGDRIYLLVDSATYQQPAEFTRIGIAAAGDTWE---EVEHDLG 370 Query 365 IPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFTLGGL 424 +P G L+AT+ YN +AA GADP FHK ++L D P+ A D + A Y FTLGGL Sbjct 371 MPAGTLSATVSNYNRHAADGADPLFHKAAKWLKPLDEPPFVALDCRVDYAFYPHFTLGGL 430 Query 425 ATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHAAARA 484 T GQVL + + GLYA G + + + G GY+SG L + +FFGR+AG HAAA A Sbjct 431 DTLPTGQVLSEKRVPIHGLYAAGRTSCGLPRWGGGYSSGMSLADATFFGRQAGRHAAASA 490 >gi|146275911|ref|YP_001166071.1| hypothetical protein Saro_3686 [Novosphingobium aromaticivorans DSM 12444] gi|145322602|gb|ABP64545.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Novosphingobium aromaticivorans DSM 12444] Length=484 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 194/471 (42%), Positives = 270/471 (58%), Gaps = 6/471 (1%) Query 14 VTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYLGGGTT 73 V W + DV VIGFG G CAA+ AA AGARV++ ER++ +GG +AL+GG Y+GGGT Sbjct 15 VPHWDFETDVAVIGFGATGACAAIEAAQAGARVMLFERSSGSGGASALSGGEIYVGGGTD 74 Query 74 VQLATGHPDSPEEMYKYL-VAVSREPDHDKIRAYCDGSVEHFNWLEGLGFQFERSYFPGK 132 Q A G D+ E KYL +A D K Y ++ H+ WL+ G + ++ PGK Sbjct 75 AQKAAGFDDTVEAFTKYLKLAGGPCADEAKCEIYGREALNHYQWLKDQGVPYRGNFLPGK 134 Query 133 AVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLLKRAASLGIQ 192 + + L+++G+E PF A PAPRGH + G GG ++D+L RA +LG + Sbjct 135 HIEPTDDSTLIWSGSEAAAPFCHEAKPAPRGHVIQHMG-WGGGRPLVDILEARARALGTE 193 Query 193 IRYETGATELIVDGTGKVTGVMWKRFSETGAIKA-KSVIIAAGGFVMNPDMVAKYTPKLA 251 I + A LIVDGT +V G + + ++ ++A K V++A GGFV N M AKY P Sbjct 194 IHIDARAVALIVDGT-RVCGAVVRIDNQDRFVRADKGVVLATGGFVFNDAMRAKYCPDTF 252 Query 252 EKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVNKLGQRFVAE 311 + +G+ DDG+GI LGVS GG HMDQ F T P P G+ VN GQRF+ E Sbjct 253 KVNSPIGDK-DDGVGIELGVSVGGDAIHMDQFFTTCPWTMPESHAYGVFVNVHGQRFINE 311 Query 312 DSYHSRTAGFIMEQPDSAAYLIVDEAHLEHP-KMPLVPLIDGWETVVEMEAALGIPPGNL 370 D YH R + ++QP YL++D A+ P + + + ET E+EA L +P G L Sbjct 312 DCYHGRVSRCALDQPGGKVYLLLDVANFVQPLDLAGITIAGTGETWEEVEAELEMPQGTL 371 Query 371 AATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFTLGGLATSVDG 430 +AT+ YN +A G DP F KQ L D P+ A +++ + ++ FTLGGL T+ DG Sbjct 372 SATMAFYNEHARDGRDPLFDKQLPILKPLDQSPFIALELNFETSYFSFFTLGGLKTTTDG 431 Query 431 QVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHAA 481 +VL G +AGL+A G C S + G GY+SG L + +FFGRRAG AA Sbjct 432 EVLDRSGKAIAGLFAAGRCTSGLPAWGHGYSSGLSLADCTFFGRRAGRKAA 482 >gi|334145019|ref|YP_004538228.1| hypothetical protein PP1Y_Mpl3136 [Novosphingobium sp. PP1Y] gi|333936902|emb|CCA90261.1| conserved hypothetical protein [Novosphingobium sp. PP1Y] Length=484 Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 195/477 (41%), Positives = 275/477 (58%), Gaps = 12/477 (2%) Query 11 AETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYLGG 70 A V +W + V VIGFG AG CAA+ AA AGARV+V ER + +GG +AL+GG Y+GG Sbjct 12 ASQVPAWDFETQVVVIGFGAAGACAAIEAADAGARVMVFERNSGSGGASALSGGEIYIGG 71 Query 71 GTTVQLATGHPDSPEEMYKYLVAVSRE-PDHDKIRAYCDGSVEHFNWLEGLGFQFERSYF 129 GT Q A G D+ E + YL A D K Y + S+ H++WL+ G + +Y Sbjct 72 GTDAQRAAGFEDTTEALAAYLKAAGGPYADEAKCDLYAEQSLSHYDWLKAQGVPYRGNYL 131 Query 130 PGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLLKRAASL 189 PGK + + L+++G+E PF ++A PAPRGH + G GG +ID+L RA L Sbjct 132 PGKHIEPVDDSTLIWSGSEAAQPFCDIATPAPRGHVIQHAG-WGGGRPLIDILEARARDL 190 Query 190 GIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKA-KSVIIAAGGFVMNPDMVAKYTP 248 G+++ + A LI DG ++ G +++ + +KA + V++A GGFV N +M KY P Sbjct 191 GVEVVADARAVALIADGE-RIVGAVFRIDNRNRYVKAARGVVLATGGFVFNEEMRRKYCP 249 Query 249 KLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVNKLGQRF 308 + +G+ DDG GI LG+ AGG HM+Q F T P P G+ VN GQRF Sbjct 250 ETFSINAPIGDK-DDGTGILLGMGAGGDAIHMEQFFTTCPWTMPEPHAKGVFVNVAGQRF 308 Query 309 VAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEHP----KMPLVPLIDGWETVVEMEAALG 364 V ED YH R + ++QP YL++D AH P +M + + WE E+EA L Sbjct 309 VNEDCYHGRVSRCAVDQPGGKVYLLLDCAHFSQPLDIAQMRIAATGETWE---EVEAELE 365 Query 365 IPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYAGFTLGGL 424 +P G L+AT+ YN +A +G DP F K+ L + GP+ A ++ + ++ FTLGGL Sbjct 366 MPEGTLSATMAFYNRHARKGCDPLFGKRTPILTPLEEGPFVALELDFMDSYFSFFTLGGL 425 Query 425 ATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHAA 481 TSVDG+VL G V+GL+A G C S + G GY+SG L + +FFGRRAG+ AA Sbjct 426 RTSVDGEVLDRAGHPVSGLFAAGRCTSGLPAWGHGYSSGMSLADCTFFGRRAGSRAA 482 >gi|226306873|ref|YP_002766833.1| hypothetical protein RER_33860 [Rhodococcus erythropolis PR4] gi|226185990|dbj|BAH34094.1| hypothetical protein RER_33860 [Rhodococcus erythropolis PR4] Length=488 Score = 306 bits (784), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 195/486 (41%), Positives = 281/486 (58%), Gaps = 24/486 (4%) Query 10 SAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYLG 69 SA ++ W + DV V G+GIAG A++ AA AGA VLVLER + GG ALAGG YLG Sbjct 11 SAASIEQWDFEADVVVAGYGIAGVSASIEAARAGADVLVLERTSGWGGAAALAGGFIYLG 70 Query 70 GGTTVQLATGHPDSPEEMYKYLV-AVSREPDHDKIRAYCDGSVEHFNWLEGLGFQFERSY 128 GGT +Q A G DSP M +++ A+ D +KI YC+GSVEH+NWL G F+ S+ Sbjct 71 GGTPLQQALGFEDSPANMKSFMMAALGPGADEEKITDYCEGSVEHYNWLVDNGVPFKESF 130 Query 129 FPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPV-----PGDTGGAAMVIDLLL 183 + P +GLM++G E PF +A PAPRGH VP G+ GG M++ L+ Sbjct 131 YGQPGWETPFDDGLMYSGGENSAPFNTIATPAPRGH-VPQMSGKRTGEKGGGFMLMKPLI 189 Query 184 KRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKS-VIIAAGGFVMNPDM 242 + A SLG++ Y+ L+VDG +V G++ K++ + A++A++ V++A G F N M Sbjct 190 ETAESLGVRAEYDMRVQRLVVDGD-RVVGIIAKQYGKEVAVRARTGVVLATGSFAYNEAM 248 Query 243 VAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVN 302 + Y P+L +P + DG I++ + G HMD + A P +++ GI+VN Sbjct 249 IQSYAPRLIGRPGAAIEEH-DGKAIQMAQALGADLAHMDATEV-AFFGDPQLMIRGILVN 306 Query 303 KLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEH-----PKMPLVPLIDGW--ET 355 GQR+V ED+Y R + + ++ AYLI+DEA E P W ET Sbjct 307 GRGQRYVNEDTYPGRIGQETLLRNENQAYLIIDEASYEEGCAADSSTPFFRFQPKWVAET 366 Query 356 VVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAM 415 V E+E+ +G+P G L +T++ YN +AARG DP K+ E++ + P A D+ + Sbjct 367 VEELESDMGLPEGTLQSTVEVYNRHAARGEDPVLGKKKEWVKPIGS-PVAALDL---RNF 422 Query 416 YAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRR 475 AGFTLGGL TS++ +V+ G + GL+A G C + + GYASGT LG+GSF+GRR Sbjct 423 TAGFTLGGLRTSINSEVIHVSGEPIPGLFAAGRCTAGVC--AGGYASGTSLGDGSFYGRR 480 Query 476 AGAHAA 481 AG AA Sbjct 481 AGISAA 486 >gi|229492746|ref|ZP_04386547.1| putative FAD binding domain protein [Rhodococcus erythropolis SK121] gi|229320405|gb|EEN86225.1| putative FAD binding domain protein [Rhodococcus erythropolis SK121] Length=488 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 194/486 (40%), Positives = 280/486 (58%), Gaps = 24/486 (4%) Query 10 SAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYLG 69 S+ + W + DV V G+GIAG A++ AA AGA VLVLER + GG ALAGG YLG Sbjct 11 SSANIEQWHFEADVVVAGYGIAGVSASIEAARAGADVLVLERTSGWGGAAALAGGFIYLG 70 Query 70 GGTTVQLATGHPDSPEEMYKYLV-AVSREPDHDKIRAYCDGSVEHFNWLEGLGFQFERSY 128 GGT +Q A G DSP M +++ A+ D +KI YC+GSVEH+NWL G F+ S+ Sbjct 71 GGTPLQQALGFEDSPANMKSFMMAALGPGADEEKITDYCEGSVEHYNWLVDNGVPFKESF 130 Query 129 FPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPV-----PGDTGGAAMVIDLLL 183 + P +GLM++G E PF +A PAPRGH VP G+ GG M++ L+ Sbjct 131 YGQPGWETPFDDGLMYSGGENSAPFNTIATPAPRGH-VPQMSGKRTGEKGGGFMLMKPLI 189 Query 184 KRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKS-VIIAAGGFVMNPDM 242 + A SLG++ Y+ L+VDG +V G++ K++ + A++A++ V++A G F N M Sbjct 190 ETAESLGVRAEYDMRVQRLVVDGD-RVVGIIAKQYGKEVAVRARTGVVLATGSFAYNEAM 248 Query 243 VAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVN 302 + Y P+L +P + DG I++ + G HMD + A P +++ GI+VN Sbjct 249 IQSYAPRLIGRPGAAIEEH-DGKSIQMAQALGADLAHMDATEV-AFFGDPQLMIRGILVN 306 Query 303 KLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEH-----PKMPLVPLIDGW--ET 355 GQR+V ED+Y R + + ++ AYLI+DEA E P W ET Sbjct 307 GRGQRYVNEDTYPGRIGQETLLRNENQAYLIIDEASYEEGCAADSSTPFFRFQPKWVAET 366 Query 356 VVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAM 415 V E+E+ +G+P G L +T++ YN +AARG DP K+ E++ + P A D+ + Sbjct 367 VEELESDMGLPEGALQSTVEVYNRHAARGEDPVLGKKKEWVKPIGS-PVAALDL---RNF 422 Query 416 YAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRR 475 AGFTLGGL TS++ +V+ G + GL+A G C + + GYASGT LG+GSF+GRR Sbjct 423 TAGFTLGGLRTSINSEVMHVSGEPIPGLFAAGRCTAGVC--AGGYASGTSLGDGSFYGRR 480 Query 476 AGAHAA 481 AG AA Sbjct 481 AGISAA 486 >gi|226365175|ref|YP_002782958.1| hypothetical protein ROP_57660 [Rhodococcus opacus B4] gi|226243665|dbj|BAH54013.1| putative oxidoreductase [Rhodococcus opacus B4] Length=490 Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 198/488 (41%), Positives = 280/488 (58%), Gaps = 23/488 (4%) Query 10 SAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYLG 69 SA V W + DV V G+GIAG AA+ AA AGA VLVLER + GG ALAGG YLG Sbjct 11 SAAEVAEWDYEADVVVAGYGIAGVSAAIEAARAGADVLVLERTSGWGGAAALAGGFIYLG 70 Query 70 GGTTVQLATGHPDSPEEMYKYLV-AVSREPDHDKIRAYCDGSVEHFNWLEGLGFQFERSY 128 GGT +Q A G D+PE M +++ A+ D +KI YC+GSVEH+NWL G F+ S+ Sbjct 71 GGTPLQKACGFEDTPENMKTFMMAALGPGADEEKITDYCEGSVEHYNWLVDCGVPFKESF 130 Query 129 FPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPV-----PGDTGGAAMVIDLLL 183 + P +GLM++G E PF E+A PAPRGH VP G+ GG M++ L+ Sbjct 131 WAEPGWEPPFDDGLMYSGGENAAPFNEIATPAPRGH-VPQMDGKRTGEKGGGYMLMKPLV 189 Query 184 KRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKS-VIIAAGGFVMNPDM 242 + A LG++ Y+ LI D TG+V G++ K++ + A++A+ V++A G F N M Sbjct 190 ETAEKLGVRAEYDMRVQTLITDDTGRVVGILAKQYGKEVAVRARRGVVLATGSFAYNDKM 249 Query 243 VAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVN 302 + + P+L +P + DG I + + G HMD + A P +++ GI+VN Sbjct 250 IEAHAPRLIGRPGAAIEEH-DGRSILMAQALGADLAHMDATEV-AFVCDPQLIVRGILVN 307 Query 303 KLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEH-----PKMPLVPLIDGW--ET 355 GQR+V ED+Y R + D+ A+L++DEA E P + + W ET Sbjct 308 GRGQRYVPEDTYSGRIGQMTLFHQDNQAFLVIDEAAYEEGSAATTATPFLRVQPKWVAET 367 Query 356 VVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAM 415 V E+E+ +G+P G L +T++ YN +AA G+DP HK+ E++ P A D+ + Sbjct 368 VEELESDMGLPAGALQSTVEVYNKHAAEGSDPLLHKKSEWVKPIGT-PVAALDL---RGF 423 Query 416 YAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRR 475 GFTLGGL TS+D +VL G + GL+A G C S + GYASGT LG+GSF+GRR Sbjct 424 TLGFTLGGLRTSIDSEVLHVSGEPIPGLFAAGRCTSGVC--AGGYASGTSLGDGSFYGRR 481 Query 476 AGAHAAAR 483 AG AA + Sbjct 482 AGISAAKQ 489 >gi|254482707|ref|ZP_05095945.1| putative FAD binding domain protein [marine gamma proteobacterium HTCC2148] gi|214037066|gb|EEB77735.1| putative FAD binding domain protein [marine gamma proteobacterium HTCC2148] Length=498 Score = 303 bits (777), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 185/483 (39%), Positives = 277/483 (58%), Gaps = 9/483 (1%) Query 11 AETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALAGGHFYLGG 70 + V W + DV ++GFG AGGCAA+ AA AG+ V++ E A+A+GG+TA++ Y+GG Sbjct 15 SRDVAQWDMETDVAIVGFGGAGGCAAIEAADAGSEVIIFELASASGGSTAMSSAEIYMGG 74 Query 71 --GTTVQLATGHPDSPEEMYKYLV-AVSREPDHDKIRAYCDGSVEHFNWLEGLGFQFERS 127 GT VQ A G DS E+M+ Y++ + + D KIR YC+ S HF+WL LG F+ S Sbjct 75 SGGTRVQQACGFDDSTEDMFTYMMMSAGPQADEVKIRNYCENSAAHFDWLVDLGVPFKDS 134 Query 128 YFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGHKVPVPGDTGGAAMVIDLLLKRAA 187 + +A++ + L++TG+EK +PF+E A P PRGH + V GD GG + + Sbjct 135 FHEERAIMCLTDDCLLYTGSEKAYPFVEHAKPCPRGHNLYVEGDNGGPLFMKIVTANVDK 194 Query 188 SLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKAKS-VIIAAGGFVMNPDMVAKY 246 I + YET A LI+D G V G++ ++ + ++A+ VI+ AGGF MN +MV KY Sbjct 195 RDHISVEYETRALTLIIDDVGAVVGLVIRKDQKEINVRARQGVILCAGGFNMNEEMVQKY 254 Query 247 TPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILLTGIIVNKLGQ 306 P L + +GN D G GI++G+S GGA +M + FI+ P YPP+ + GI +N Q Sbjct 255 APMLTQGTEPIGNPGDTGSGIQMGMSVGGAAINMHEGFISIPYYPPASMTCGIAINDKAQ 314 Query 307 RFVAEDSYHSRTAGFIMEQPDSAAYLIVD-EAHLEHPKMPLV--PLIDGWETVVEMEAAL 363 RF+ ED YH+R ++Q Y IV + + + KM + + E+V E+E L Sbjct 315 RFINEDVYHARLGHAALQQQGDRLYFIVTVDDYGSYEKMNFLGASIAGTGESVTELEDEL 374 Query 364 GIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGAFDMSLGKAMYA-GFTLG 422 G+ G+L T+D YN G D +HK ++L + P A D++ G+ + FTLG Sbjct 375 GLRKGSLQQTIDLYNEDCVTGEDSQYHKASQWLKPLE-APLVALDITPGRGCFVPWFTLG 433 Query 423 GLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQLGEGSFFGRRAGAHAAA 482 GL T GQV+ ++ GLYA G A I + +GY+SG +G+ +F GR AG AA+ Sbjct 434 GLDTLPTGQVVDPQRQIIPGLYAAGRTACGIVRRAEGYSSGMSVGDATFSGRLAGKQAAS 493 Query 483 RAQ 485 + Sbjct 494 STK 496 >gi|126470057|dbj|BAF48140.1| hypothetical protein [Rhodococcus rhodochrous] Length=488 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 200/495 (41%), Positives = 284/495 (58%), Gaps = 28/495 (5%) Query 3 TDIPATVSAETVTSWSDDVDVTVIGFGIAGGCAAVSAAAAGARVLVLERAAAAGGTTALA 62 TDI + AE + W + DV + GFGIAG AA+ AA +GA VLVLER GG AL+ Sbjct 4 TDI-RPIPAEGIEHWDHEADVVIAGFGIAGVAAAIGAAESGADVLVLERTGGGGGAAALS 62 Query 63 GGHFYLGGGTTVQLATGHPDSPEEMYKYL-VAVSREPDHDKIRAYCDGSVEHFNWLEGLG 121 GG YLGGGT +Q A G D+PE M +L A+ D K+ AYCDGSV HF WLE G Sbjct 63 GGIVYLGGGTRLQKACGIDDTPENMKTFLAAALGPGVDEQKLDAYCDGSVAHFEWLEACG 122 Query 122 FQFERSYFPGKAVIQPNTEGLMFTGNEKVWPFLELAVPAPRGH--KVPVP--GDTGGAAM 177 ++ +++ PN + LM++G E PF L PAPRGH +VP+P G+ G + Sbjct 123 VPYKDAFWNQPGWEIPNDDSLMYSGGENAAPFSTLVDPAPRGHLAQVPMPRKGEQGAGHV 182 Query 178 VIDLLLKRAASLGIQIRYETGATELIVDGTGKVTGVMWKRFSETGAIKA-KSVIIAAGGF 236 ++ L+ +A LG++I + L+ D G+V G++ RF + A++A K VI+A G F Sbjct 183 LMTTLIAKAGELGVRIETDVRMQRLVTDTDGRVVGLVTTRFGKQVAVRARKGVILATGSF 242 Query 237 VMNPDMVAKYTPKLAEKPFVLGNTYDDGLGIRLGVSAGGATQHMDQMFITAPPYPPSILL 296 N +M+ Y P+L ++P + DG GI + + G HMD + A P ++ Sbjct 243 AYNDEMMQAYAPRLYKRPAATVEEH-DGRGILVAQALGAGLAHMDACEV-AFFCDPQLMA 300 Query 297 TGIIVNKLGQRFVAEDSYHSRTAGFIMEQPDSAAYLIVDEAHLEH--------PKMPLVP 348 GI+VN GQR+V ED+Y R + + D+ A+L++D+ E P++ P Sbjct 301 RGILVNGRGQRYVQEDTYPGRIGQLTLFENDNQAFLVIDQKSYEEGMAAPSSSPQLKRQP 360 Query 349 LIDGW--ETVVEMEAALGIPPGNLAATLDRYNAYAARGADPDFHKQPEFLAAQDNGPWGA 406 W ETV E+E+ +G+P G+L +T+ YN +AA G+DP K+PE++A + P A Sbjct 361 T---WVCETVDELESEMGLPSGSLTSTVAEYNRHAAEGSDPVLGKKPEWVAPIGS-PVAA 416 Query 407 FDMSLGKAMYAGFTLGGLATSVDGQVLRDDGAVVAGLYAVGACASNIAQDGKGYASGTQL 466 D+ + GFTLGGL T+VD +VL DG + GLYA G C S ++ GY SG L Sbjct 417 IDL---RGNTGGFTLGGLRTTVDSEVLHVDGTPIPGLYAAGRCTSGLS--AFGYCSGISL 471 Query 467 GEGSFFGRRAGAHAA 481 G+GSFFGR+AG HAA Sbjct 472 GDGSFFGRKAGIHAA 486 Lambda K H 0.318 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1038195005428 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40