BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1826
Length=134
Score E
Sequences producing significant alignments: (Bits) Value
gi|255918033|pdb|3IFT|A Chain A, Crystal Structure Of Glycine Cl... 266 8e-70
gi|238538027|pdb|3HGB|A Chain A, Crystal Structure Of Glycine Cl... 265 1e-69
gi|15608963|ref|NP_216342.1| glycine cleavage system protein H [... 265 2e-69
gi|289745742|ref|ZP_06505120.1| glycine cleavage system protein ... 263 6e-69
gi|31793016|ref|NP_855509.1| glycine cleavage system protein H [... 263 8e-69
gi|289757930|ref|ZP_06517308.1| glycine cleavage system protein ... 262 1e-68
gi|340626834|ref|YP_004745286.1| putative glycine cleavage syste... 261 3e-68
gi|41407637|ref|NP_960473.1| glycine cleavage system protein H [... 228 2e-58
gi|254775365|ref|ZP_05216881.1| glycine cleavage system protein ... 224 2e-57
gi|254823240|ref|ZP_05228241.1| glycine cleavage system protein ... 224 4e-57
gi|342861270|ref|ZP_08717918.1| glycine cleavage system protein ... 223 6e-57
gi|296164812|ref|ZP_06847371.1| acetyl-coA carboxylase carboxyl ... 221 3e-56
gi|15828123|ref|NP_302386.1| glycine cleavage system protein H [... 216 1e-54
gi|118618434|ref|YP_906766.1| glycine cleavage system protein H ... 205 2e-51
gi|183982710|ref|YP_001851001.1| glycine cleavage system H prote... 203 8e-51
gi|240171749|ref|ZP_04750408.1| glycine cleavage system protein ... 194 4e-48
gi|145223989|ref|YP_001134667.1| glycine cleavage system protein... 189 9e-47
gi|315444321|ref|YP_004077200.1| glycine cleavage system protein... 187 3e-46
gi|108799811|ref|YP_640008.1| glycine cleavage system protein H ... 187 5e-46
gi|120404115|ref|YP_953944.1| glycine cleavage system protein H ... 187 6e-46
gi|118467731|ref|YP_887951.1| glycine cleavage system protein H ... 187 7e-46
gi|333990561|ref|YP_004523175.1| glycine cleavage system H prote... 186 7e-46
gi|312139835|ref|YP_004007171.1| glycine cleavage system protein... 177 6e-43
gi|111017925|ref|YP_700897.1| glycine cleavage system protein H ... 172 2e-41
gi|169629488|ref|YP_001703137.1| glycine cleavage system H prote... 169 2e-40
gi|326384966|ref|ZP_08206640.1| glycine cleavage system protein ... 163 7e-39
gi|262202679|ref|YP_003273887.1| glycine cleavage system protein... 162 1e-38
gi|23821218|emb|CAD52976.1| putative glycine cleavage system pro... 162 1e-38
gi|324997670|ref|ZP_08118782.1| glycine cleavage system H protei... 161 3e-38
gi|333920804|ref|YP_004494385.1| glycine cleavage system H prote... 161 4e-38
gi|343928463|ref|ZP_08767911.1| glycine cleavage system H protei... 160 9e-38
gi|256392313|ref|YP_003113877.1| glycine cleavage system protein... 159 2e-37
gi|256379362|ref|YP_003103022.1| glycine cleavage system H prote... 157 5e-37
gi|226360056|ref|YP_002777834.1| glycine cleavage system protein... 154 3e-36
gi|319949171|ref|ZP_08023260.1| glycine cleavage system protein ... 154 4e-36
gi|284031103|ref|YP_003381034.1| glycine cleavage system H prote... 154 5e-36
gi|84496381|ref|ZP_00995235.1| glycine cleavage system protein H... 154 6e-36
gi|145594911|ref|YP_001159208.1| glycine cleavage system H prote... 153 1e-35
gi|54024454|ref|YP_118696.1| glycine cleavage system protein H [... 152 1e-35
gi|226306712|ref|YP_002766672.1| glycine cleavage system H-prote... 150 4e-35
gi|326331335|ref|ZP_08197626.1| glycine cleavage system H protei... 150 8e-35
gi|229494853|ref|ZP_04388606.1| glycine cleavage system H protei... 150 9e-35
gi|336178131|ref|YP_004583506.1| glycine cleavage system H prote... 149 1e-34
gi|331699322|ref|YP_004335561.1| glycine cleavage system H prote... 149 1e-34
gi|312196778|ref|YP_004016839.1| glycine cleavage system H prote... 149 1e-34
gi|309810367|ref|ZP_07704202.1| glycine cleavage system H protei... 149 1e-34
gi|317124947|ref|YP_004099059.1| glycine cleavage system protein... 149 2e-34
gi|255326205|ref|ZP_05367291.1| glycine cleavage system H protei... 147 4e-34
gi|239917887|ref|YP_002957445.1| glycine cleavage system H prote... 146 9e-34
gi|296140043|ref|YP_003647286.1| glycine cleavage system protein... 145 1e-33
>gi|255918033|pdb|3IFT|A Chain A, Crystal Structure Of Glycine Cleavage System Protein
H From Mycobacterium Tuberculosis, Using X-Rays From The Compact
L Source.
Length=142
Score = 266 bits (680), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 134/134 (100%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE
Sbjct 9 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 68
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT
Sbjct 69 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 128
Query 121 TLLDAEAYRGTLTE 134
TLLDAEAYRGTLTE
Sbjct 129 TLLDAEAYRGTLTE 142
>gi|238538027|pdb|3HGB|A Chain A, Crystal Structure Of Glycine Cleavage System Protein
H From Mycobacterium Tuberculosis
Length=155
Score = 265 bits (678), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 133/134 (99%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+SDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE
Sbjct 22 MSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 81
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT
Sbjct 82 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 141
Query 121 TLLDAEAYRGTLTE 134
TLLDAEAYRGTLTE
Sbjct 142 TLLDAEAYRGTLTE 155
>gi|15608963|ref|NP_216342.1| glycine cleavage system protein H [Mycobacterium tuberculosis
H37Rv]
gi|15841296|ref|NP_336333.1| glycine cleavage system protein H [Mycobacterium tuberculosis
CDC1551]
gi|148661632|ref|YP_001283155.1| glycine cleavage system protein H [Mycobacterium tuberculosis
H37Ra]
49 more sequence titles
Length=134
Score = 265 bits (676), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 133/134 (99%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+SDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE
Sbjct 1 MSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT
Sbjct 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
Query 121 TLLDAEAYRGTLTE 134
TLLDAEAYRGTLTE
Sbjct 121 TLLDAEAYRGTLTE 134
>gi|289745742|ref|ZP_06505120.1| glycine cleavage system protein H [Mycobacterium tuberculosis
02_1987]
gi|294996736|ref|ZP_06802427.1| glycine cleavage system protein H [Mycobacterium tuberculosis
210]
gi|298525320|ref|ZP_07012729.1| glycine cleavage system H protein [Mycobacterium tuberculosis
94_M4241A]
gi|289686270|gb|EFD53758.1| glycine cleavage system protein H [Mycobacterium tuberculosis
02_1987]
gi|298495114|gb|EFI30408.1| glycine cleavage system H protein [Mycobacterium tuberculosis
94_M4241A]
gi|326903429|gb|EGE50362.1| glycine cleavage system H protein gcvH [Mycobacterium tuberculosis
W-148]
gi|339294763|gb|AEJ46874.1| glycine cleavage system protein H [Mycobacterium tuberculosis
CCDC5079]
gi|339298390|gb|AEJ50500.1| glycine cleavage system protein H [Mycobacterium tuberculosis
CCDC5180]
Length=134
Score = 263 bits (672), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 132/134 (99%), Positives = 133/134 (99%), Gaps = 0/134 (0%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+SDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE
Sbjct 1 MSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT
Sbjct 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
Query 121 TLLDAEAYRGTLTE 134
LLDAEAYRGTLTE
Sbjct 121 KLLDAEAYRGTLTE 134
>gi|31793016|ref|NP_855509.1| glycine cleavage system protein H [Mycobacterium bovis AF2122/97]
gi|121637729|ref|YP_977952.1| glycine cleavage system protein H [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224990213|ref|YP_002644900.1| glycine cleavage system protein H [Mycobacterium bovis BCG str.
Tokyo 172]
21 more sequence titles
Length=134
Score = 263 bits (671), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 132/134 (99%), Positives = 133/134 (99%), Gaps = 0/134 (0%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+SDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE
Sbjct 1 MSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAPISGKVS VNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT
Sbjct 61 VESTKSVSDLYAPISGKVSAVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
Query 121 TLLDAEAYRGTLTE 134
TLLDAEAYRGTLTE
Sbjct 121 TLLDAEAYRGTLTE 134
>gi|289757930|ref|ZP_06517308.1| glycine cleavage system protein H [Mycobacterium tuberculosis
T85]
gi|289713494|gb|EFD77506.1| glycine cleavage system protein H [Mycobacterium tuberculosis
T85]
Length=134
Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 131/134 (98%), Positives = 133/134 (99%), Gaps = 0/134 (0%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+SDIPSDLHYTAEHEWIRRSGDDTVR+GITDYAQSALGDVVFVQLPVIGTAVTAGETFGE
Sbjct 1 MSDIPSDLHYTAEHEWIRRSGDDTVRMGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT
Sbjct 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
Query 121 TLLDAEAYRGTLTE 134
LLDAEAYRGTLTE
Sbjct 121 KLLDAEAYRGTLTE 134
>gi|340626834|ref|YP_004745286.1| putative glycine cleavage system H protein GCVH [Mycobacterium
canettii CIPT 140010059]
gi|340005024|emb|CCC44173.1| putative glycine cleavage system H protein GCVH [Mycobacterium
canettii CIPT 140010059]
Length=134
Score = 261 bits (666), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 131/134 (98%), Positives = 132/134 (99%), Gaps = 0/134 (0%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+SDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLP IGTAVTAGETFGE
Sbjct 1 MSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPAIGTAVTAGETFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAPISGKVS VNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT
Sbjct 61 VESTKSVSDLYAPISGKVSAVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
Query 121 TLLDAEAYRGTLTE 134
TLLDAEAYRGTLTE
Sbjct 121 TLLDAEAYRGTLTE 134
>gi|41407637|ref|NP_960473.1| glycine cleavage system protein H [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118464885|ref|YP_882075.1| glycine cleavage system protein H [Mycobacterium avium 104]
gi|81571348|sp|Q73ZR2.1|GCSH_MYCPA RecName: Full=Glycine cleavage system H protein
gi|158512438|sp|A0QGN7.1|GCSH_MYCA1 RecName: Full=Glycine cleavage system H protein
gi|41395990|gb|AAS03856.1| GcvH [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118166172|gb|ABK67069.1| glycine cleavage system H protein [Mycobacterium avium 104]
gi|336457589|gb|EGO36594.1| glycine cleavage system H protein [Mycobacterium avium subsp.
paratuberculosis S397]
Length=132
Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/134 (83%), Positives = 124/134 (93%), Gaps = 2/134 (1%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+SDIP DLHYTAEHEW+RRSGDDTVRVGITD+AQSALGDVVFVQLP +G +TAGE+FGE
Sbjct 1 MSDIPPDLHYTAEHEWVRRSGDDTVRVGITDFAQSALGDVVFVQLPEVGAQLTAGESFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAP+SG V+ VN+DL+G+PQLVNSDPYGAGWLLD+QV SD AALESA+T
Sbjct 61 VESTKSVSDLYAPVSGTVTAVNTDLEGSPQLVNSDPYGAGWLLDVQV--SDAAALESAIT 118
Query 121 TLLDAEAYRGTLTE 134
LLDAEAYRGTLTE
Sbjct 119 ALLDAEAYRGTLTE 132
>gi|254775365|ref|ZP_05216881.1| glycine cleavage system protein H [Mycobacterium avium subsp.
avium ATCC 25291]
Length=132
Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/134 (83%), Positives = 123/134 (92%), Gaps = 2/134 (1%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+SDIP DLHYTAEHEW+ RSGDDTVRVGITD+AQSALGDVVFVQLP +G +TAGE+FGE
Sbjct 1 MSDIPPDLHYTAEHEWVCRSGDDTVRVGITDFAQSALGDVVFVQLPEVGAQLTAGESFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAP+SG V+ VN+DL+G+PQLVNSDPYGAGWLLD+QV SD AALESA+T
Sbjct 61 VESTKSVSDLYAPVSGTVTAVNTDLEGSPQLVNSDPYGAGWLLDVQV--SDAAALESAIT 118
Query 121 TLLDAEAYRGTLTE 134
LLDAEAYRGTLTE
Sbjct 119 ALLDAEAYRGTLTE 132
>gi|254823240|ref|ZP_05228241.1| glycine cleavage system protein H [Mycobacterium intracellulare
ATCC 13950]
Length=132
Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/134 (82%), Positives = 125/134 (94%), Gaps = 2/134 (1%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+SDIP DL YTAEHEW+RRSGDDT+RVGITD+AQSALGDVVFVQLP +G +TAGE+FGE
Sbjct 1 MSDIPPDLRYTAEHEWVRRSGDDTLRVGITDFAQSALGDVVFVQLPDVGAELTAGESFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAP+SGKVS VN+DL+G+PQLVNSDPYGAGWLLD+QV SDVA +ESA++
Sbjct 61 VESTKSVSDLYAPVSGKVSAVNTDLEGSPQLVNSDPYGAGWLLDVQV--SDVAEVESAIS 118
Query 121 TLLDAEAYRGTLTE 134
+LLDAEAYRGTLTE
Sbjct 119 SLLDAEAYRGTLTE 132
>gi|342861270|ref|ZP_08717918.1| glycine cleavage system protein H [Mycobacterium colombiense
CECT 3035]
gi|342131170|gb|EGT84451.1| glycine cleavage system protein H [Mycobacterium colombiense
CECT 3035]
Length=132
Score = 223 bits (568), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 109/134 (82%), Positives = 123/134 (92%), Gaps = 2/134 (1%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+SDIP DL YTAEHEW+RRSGDDT+RVGITD+AQSALGDVVFVQLP +GT +TAGE+FGE
Sbjct 1 MSDIPPDLRYTAEHEWVRRSGDDTLRVGITDFAQSALGDVVFVQLPDVGTELTAGESFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAP+SGKV+ VN DLDG+PQLVNSDPYG GWLLD+QV SDV LESA++
Sbjct 61 VESTKSVSDLYAPVSGKVTAVNGDLDGSPQLVNSDPYGGGWLLDVQV--SDVGELESAIS 118
Query 121 TLLDAEAYRGTLTE 134
+LLDAEAYRGTLTE
Sbjct 119 SLLDAEAYRGTLTE 132
>gi|296164812|ref|ZP_06847371.1| acetyl-coA carboxylase carboxyl transferase subunit beta [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295899826|gb|EFG79273.1| acetyl-coA carboxylase carboxyl transferase subunit beta [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length=132
Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 106/134 (80%), Positives = 126/134 (95%), Gaps = 2/134 (1%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+SDIP DLHYTAEHEW+RRSG+DTVRVGITD+AQSALGDVVFVQLP +GT +T G++FGE
Sbjct 1 MSDIPPDLHYTAEHEWVRRSGEDTVRVGITDFAQSALGDVVFVQLPEVGTELTGGQSFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAP+SG VS VN++L+G+PQLVNSDPYGAGWL+D++V SDV+ALESA++
Sbjct 61 VESTKSVSDLYAPLSGTVSAVNAELEGSPQLVNSDPYGAGWLVDVRV--SDVSALESAIS 118
Query 121 TLLDAEAYRGTLTE 134
+LLDAEAYRGTLTE
Sbjct 119 SLLDAEAYRGTLTE 132
>gi|15828123|ref|NP_302386.1| glycine cleavage system protein H [Mycobacterium leprae TN]
gi|221230600|ref|YP_002504016.1| glycine cleavage system protein H [Mycobacterium leprae Br4923]
gi|12229789|sp|O32920.1|GCSH_MYCLE RecName: Full=Glycine cleavage system H protein
gi|254797811|sp|B8ZSP0.1|GCSH_MYCLB RecName: Full=Glycine cleavage system H protein
gi|2578384|emb|CAA15469.1| glycine cleavage system h protein [Mycobacterium leprae]
gi|13093677|emb|CAC31032.1| glycine cleavage system H protein [Mycobacterium leprae]
gi|219933707|emb|CAR72174.1| glycine cleavage system H protein [Mycobacterium leprae Br4923]
Length=132
Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 105/134 (79%), Positives = 120/134 (90%), Gaps = 2/134 (1%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+SDIPSDLHYTAEHEWIRRS +DTVRVG+TD+AQS LGDVVFVQLP +G + AG++FGE
Sbjct 1 MSDIPSDLHYTAEHEWIRRSREDTVRVGLTDFAQSTLGDVVFVQLPEVGAELAAGKSFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAP+SG VS VN+DL+G+PQLVNSDPYGAGWLLD+ V SDV ALESA+
Sbjct 61 VESTKSVSDLYAPVSGTVSAVNTDLEGSPQLVNSDPYGAGWLLDVHV--SDVGALESAIA 118
Query 121 TLLDAEAYRGTLTE 134
TLLDAE YRGTLT+
Sbjct 119 TLLDAETYRGTLTK 132
>gi|118618434|ref|YP_906766.1| glycine cleavage system protein H [Mycobacterium ulcerans Agy99]
gi|118570544|gb|ABL05295.1| glycine cleavage system H protein GcvH [Mycobacterium ulcerans
Agy99]
Length=134
Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/134 (80%), Positives = 122/134 (92%), Gaps = 0/134 (0%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+SDIP+DLHYTAEHEWIRR+ +DTVRVGITD+AQSALGDVVFVQLP +G VTAGETFGE
Sbjct 1 MSDIPADLHYTAEHEWIRRTAEDTVRVGITDFAQSALGDVVFVQLPDVGAEVTAGETFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDL+APISGKV+ VN+DL+ TPQLVN+DPYGAGWLLD+QV+ SDVAALESAL
Sbjct 61 VESTKSVSDLFAPISGKVAAVNADLEATPQLVNTDPYGAGWLLDVQVEGSDVAALESALA 120
Query 121 TLLDAEAYRGTLTE 134
LLD + YR T+TE
Sbjct 121 ALLDVQTYRDTVTE 134
>gi|183982710|ref|YP_001851001.1| glycine cleavage system H protein GcvH [Mycobacterium marinum
M]
gi|183176036|gb|ACC41146.1| glycine cleavage system H protein GcvH [Mycobacterium marinum
M]
Length=134
Score = 203 bits (516), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 108/134 (81%), Positives = 123/134 (92%), Gaps = 0/134 (0%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+SDIP+DLHYTAEHEWIRR+ +DTVRVGITD+AQSALGDVVFVQLP +G VTAGETFGE
Sbjct 1 MSDIPADLHYTAEHEWIRRTAEDTVRVGITDFAQSALGDVVFVQLPDVGAEVTAGETFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDL+APISGKV+ VN+DL+ TPQLVN+DPYGAGWLLD+QV+ SDVAALESAL
Sbjct 61 VESTKSVSDLFAPISGKVAAVNADLEATPQLVNTDPYGAGWLLDVQVEGSDVAALESALA 120
Query 121 TLLDAEAYRGTLTE 134
LLDA+ YR T+TE
Sbjct 121 ALLDAQTYRDTVTE 134
>gi|240171749|ref|ZP_04750408.1| glycine cleavage system protein H [Mycobacterium kansasii ATCC
12478]
Length=132
Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/134 (77%), Positives = 115/134 (86%), Gaps = 2/134 (1%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+SDIP DLHYTAEHEW+RR+ DDTVRVGITD+AQSALGDVVFVQLP +G VTAGE+FGE
Sbjct 1 MSDIPPDLHYTAEHEWVRRTADDTVRVGITDFAQSALGDVVFVQLPAVGDEVTAGESFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAP+SGKV+ VNSDL+GTPQLVNSDPYG GWLLD+QV+SS A A
Sbjct 61 VESTKSVSDLYAPVSGKVAAVNSDLEGTPQLVNSDPYGDGWLLDLQVESSAAAEAALAAL 120
Query 121 TLLDAEAYRGTLTE 134
AEAYRGT+TE
Sbjct 121 LD--AEAYRGTITE 132
>gi|145223989|ref|YP_001134667.1| glycine cleavage system protein H [Mycobacterium gilvum PYR-GCK]
gi|189045285|sp|A4TA86.1|GCSH_MYCGI RecName: Full=Glycine cleavage system H protein
gi|145216475|gb|ABP45879.1| glycine cleavage system H protein [Mycobacterium gilvum PYR-GCK]
Length=131
Score = 189 bits (481), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/134 (68%), Positives = 112/134 (84%), Gaps = 3/134 (2%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+S+IP+DL YT EHEW++R+GDDTVRVGITDYAQ+ALGDVVFVQLP + A+TAGE+FGE
Sbjct 1 MSEIPADLSYTEEHEWVQRTGDDTVRVGITDYAQAALGDVVFVQLPDVDAALTAGESFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAP++ KV VN DL+ PQLVNSDPYG GWL+++Q DS A+L++AL
Sbjct 61 VESTKSVSDLYAPLTAKVVAVNGDLESNPQLVNSDPYGEGWLVELQADS---ASLDAALA 117
Query 121 TLLDAEAYRGTLTE 134
L DAE YRG + +
Sbjct 118 ELFDAEGYRGHVAD 131
>gi|315444321|ref|YP_004077200.1| glycine cleavage system protein H [Mycobacterium sp. Spyr1]
gi|315262624|gb|ADT99365.1| glycine cleavage system H protein [Mycobacterium sp. Spyr1]
Length=131
Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/134 (68%), Positives = 111/134 (83%), Gaps = 3/134 (2%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+S+IP+DL YT EHEW++R+GDDTVRVGITDYAQ+ALGDVVFVQLP + A+TAGE+FGE
Sbjct 1 MSEIPADLSYTEEHEWVQRTGDDTVRVGITDYAQAALGDVVFVQLPDVDAALTAGESFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAP++ KV VN DL+ PQLVNSDPYG GWL+++Q D A+L++AL
Sbjct 61 VESTKSVSDLYAPLTAKVVAVNGDLESNPQLVNSDPYGEGWLVELQADG---ASLDAALA 117
Query 121 TLLDAEAYRGTLTE 134
L DAE YRG + +
Sbjct 118 ELFDAEGYRGHVAD 131
>gi|108799811|ref|YP_640008.1| glycine cleavage system protein H [Mycobacterium sp. MCS]
gi|119868921|ref|YP_938873.1| glycine cleavage system protein H [Mycobacterium sp. KMS]
gi|126435455|ref|YP_001071146.1| glycine cleavage system protein H [Mycobacterium sp. JLS]
6 more sequence titles
Length=131
Score = 187 bits (475), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 89/134 (67%), Positives = 114/134 (86%), Gaps = 3/134 (2%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+S+IP++L+YT EHEW+ R+GDDT+RVGITDYAQ+ALGDVVFVQLP +G +T+GE+FGE
Sbjct 1 MSEIPAELYYTDEHEWVLRTGDDTLRVGITDYAQAALGDVVFVQLPDVGAELTSGESFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAP+S KV VN +L+ +P LVNSDPYG GWL+D+Q+D+ D +E+AL
Sbjct 61 VESTKSVSDLYAPVSAKVLAVNGNLEASPDLVNSDPYGEGWLVDLQLDADD---MEAALG 117
Query 121 TLLDAEAYRGTLTE 134
LLDA+ YRG +TE
Sbjct 118 GLLDADGYRGVVTE 131
>gi|120404115|ref|YP_953944.1| glycine cleavage system protein H [Mycobacterium vanbaalenii
PYR-1]
gi|158513017|sp|A1T9T8.1|GCSH_MYCVP RecName: Full=Glycine cleavage system H protein
gi|119956933|gb|ABM13938.1| glycine cleavage system H protein [Mycobacterium vanbaalenii
PYR-1]
Length=131
Score = 187 bits (474), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 88/129 (69%), Positives = 110/129 (86%), Gaps = 3/129 (2%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+S+IP+DL YT EHEW++R+GD TVRVGITDYAQSALGDVVFVQLP +G+ VTAGE+FGE
Sbjct 1 MSEIPADLSYTTEHEWVQRTGDGTVRVGITDYAQSALGDVVFVQLPDVGSDVTAGESFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAP++ KV VN DL+G PQLVNSDPYG GWL+++Q ++ ++++ L
Sbjct 61 VESTKSVSDLYAPVTAKVIAVNGDLEGNPQLVNSDPYGEGWLVELQTETE---SMQAGLA 117
Query 121 TLLDAEAYR 129
+LLDAE YR
Sbjct 118 SLLDAEGYR 126
>gi|118467731|ref|YP_887951.1| glycine cleavage system protein H [Mycobacterium smegmatis str.
MC2 155]
gi|158512470|sp|A0QYG3.1|GCSH_MYCS2 RecName: Full=Glycine cleavage system H protein
gi|118169018|gb|ABK69914.1| glycine cleavage system H protein [Mycobacterium smegmatis str.
MC2 155]
Length=131
Score = 187 bits (474), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 90/134 (68%), Positives = 112/134 (84%), Gaps = 3/134 (2%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+S+IP+DL+YT+EHEW+ R+GDDTVRVGITDYAQSALGDVVFVQLP +G V +G+ FGE
Sbjct 1 MSEIPADLYYTSEHEWVLRTGDDTVRVGITDYAQSALGDVVFVQLPDVGADVASGDAFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDLYAP++ KV VN DL+G+P+LVNSDPYG GWL+D++V++ L+ AL
Sbjct 61 VESTKSVSDLYAPVTAKVVAVNGDLEGSPELVNSDPYGEGWLVDLRVEA---GTLDEALG 117
Query 121 TLLDAEAYRGTLTE 134
LLDAE YR +TE
Sbjct 118 GLLDAEGYRAVVTE 131
>gi|333990561|ref|YP_004523175.1| glycine cleavage system H protein GcvH [Mycobacterium sp. JDM601]
gi|333486529|gb|AEF35921.1| glycine cleavage system H protein GcvH [Mycobacterium sp. JDM601]
Length=133
Score = 186 bits (473), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 91/133 (69%), Positives = 108/133 (82%), Gaps = 4/133 (3%)
Query 2 SDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEV 61
S++PSDL+YTAEHEW++R+G DTVRVGITD+AQ+ALGDVVFVQLP +G VTAGE+FGEV
Sbjct 5 SNVPSDLYYTAEHEWVQRTGTDTVRVGITDFAQAALGDVVFVQLPEVGADVTAGESFGEV 64
Query 62 ESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTT 121
ESTKSVSDL+ PIS KV VN+DLD +PQLVNSDPYGAGWL+D+Q L+ L
Sbjct 65 ESTKSVSDLFGPISAKVVAVNADLDASPQLVNSDPYGAGWLVDLQA----ADGLDETLAG 120
Query 122 LLDAEAYRGTLTE 134
LL +AYR TL E
Sbjct 121 LLTPDAYRATLAE 133
>gi|312139835|ref|YP_004007171.1| glycine cleavage system protein h [Rhodococcus equi 103S]
gi|325674354|ref|ZP_08154043.1| glycine cleavage system protein H [Rhodococcus equi ATCC 33707]
gi|311889174|emb|CBH48488.1| glycine cleavage system protein H [Rhodococcus equi 103S]
gi|325555034|gb|EGD24707.1| glycine cleavage system protein H [Rhodococcus equi ATCC 33707]
Length=134
Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 85/124 (69%), Positives = 103/124 (84%), Gaps = 2/124 (1%)
Query 5 PSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVEST 64
P DL YTAEHEW+RR+G TVRVGITD+AQS LGDVVFVQLP +G VT+G++FGEVEST
Sbjct 7 PDDLRYTAEHEWVRRTGPTTVRVGITDFAQSQLGDVVFVQLPAVGEDVTSGDSFGEVEST 66
Query 65 KSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLD 124
KSVSD+YAP++ KV VN DLDG+P+LVNS+PYG GWL+D++V+ D A L+S L LD
Sbjct 67 KSVSDIYAPLTAKVVAVNEDLDGSPELVNSEPYGNGWLVDLEVE--DEAGLDSVLAATLD 124
Query 125 AEAY 128
AEAY
Sbjct 125 AEAY 128
>gi|111017925|ref|YP_700897.1| glycine cleavage system protein H [Rhodococcus jostii RHA1]
gi|110817455|gb|ABG92739.1| glycine cleavage system H protein [Rhodococcus jostii RHA1]
Length=134
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/126 (66%), Positives = 101/126 (81%), Gaps = 2/126 (1%)
Query 3 DIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVE 62
+IP+D YTAEHEW+ R+G TVRVGITD+AQS LGDVVFVQLP + AVTAGE+FGEVE
Sbjct 5 EIPADRRYTAEHEWVERTGPTTVRVGITDFAQSQLGDVVFVQLPAVDEAVTAGESFGEVE 64
Query 63 STKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTL 122
STKSVSD++AP++ KV N+DLDG P+LVNS PYG GWL+D+ VD D A L++AL +
Sbjct 65 STKSVSDIFAPLTAKVVAANADLDGNPELVNSAPYGQGWLVDLGVD--DEATLDAALAEM 122
Query 123 LDAEAY 128
LDA Y
Sbjct 123 LDAAGY 128
>gi|169629488|ref|YP_001703137.1| glycine cleavage system H protein [Mycobacterium abscessus ATCC
19977]
gi|226801526|sp|B1MB62.1|GCSH_MYCA9 RecName: Full=Glycine cleavage system H protein
gi|169241455|emb|CAM62483.1| Glycine cleavage system H protein (GcvH) [Mycobacterium abscessus]
Length=131
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/128 (68%), Positives = 105/128 (83%), Gaps = 2/128 (1%)
Query 1 VSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGE 60
+++IP+DLHYT EHEW+RR+GD TVR+GITDYAQS LGDVVFVQLP +G+ +TAG TFGE
Sbjct 1 MTEIPADLHYTEEHEWVRRTGDTTVRIGITDYAQSQLGDVVFVQLPDVGSELTAGSTFGE 60
Query 61 VESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALT 120
VESTKSVSDL+API+ KV N DLD PQLVNSDPYG GWL+D++ ++ A L++AL
Sbjct 61 VESTKSVSDLFAPITAKVIAANGDLDSDPQLVNSDPYGEGWLVDLE--AASAADLDAALN 118
Query 121 TLLDAEAY 128
LLDA Y
Sbjct 119 DLLDASGY 126
>gi|326384966|ref|ZP_08206640.1| glycine cleavage system protein H [Gordonia neofelifaecis NRRL
B-59395]
gi|326196356|gb|EGD53556.1| glycine cleavage system protein H [Gordonia neofelifaecis NRRL
B-59395]
Length=134
Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 79/130 (61%), Positives = 100/130 (77%), Gaps = 2/130 (1%)
Query 4 IPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVES 63
IP +L YTAEHEWIR+ GD TVRVGITD+AQ ALGDVVFVQLP + + V GE+F EVES
Sbjct 6 IPDELRYTAEHEWIRKVGDKTVRVGITDFAQDALGDVVFVQLPDVDSDVETGESFAEVES 65
Query 64 TKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLL 123
TKSVSD++ P+ G V+ VN +LDG P+LVNS PYG GWL++I + +D A ++ L +LL
Sbjct 66 TKSVSDIFGPLDGTVAAVNDELDGAPELVNSAPYGDGWLVEITL--ADDADIDGVLASLL 123
Query 124 DAEAYRGTLT 133
DAE YR ++
Sbjct 124 DAEGYRAVIS 133
>gi|262202679|ref|YP_003273887.1| glycine cleavage system protein H [Gordonia bronchialis DSM 43247]
gi|262086026|gb|ACY21994.1| glycine cleavage system H protein [Gordonia bronchialis DSM 43247]
Length=134
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/131 (60%), Positives = 100/131 (77%), Gaps = 2/131 (1%)
Query 2 SDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEV 61
S++P +L YTAEHEW+R+ G VRVGITD+AQ ALGDVVFVQLP G+AV +GE+F EV
Sbjct 4 SNVPDELRYTAEHEWVRQVGPTVVRVGITDFAQDALGDVVFVQLPEEGSAVESGESFAEV 63
Query 62 ESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTT 121
ESTKSVSD++ P+ G VS VN +L+ P LVNSDPYGAGWL++I++ +D A L + L
Sbjct 64 ESTKSVSDIFGPLDGTVSAVNGELEAAPDLVNSDPYGAGWLVEIEI--ADKATLTARLDA 121
Query 122 LLDAEAYRGTL 132
+LDA YR +
Sbjct 122 ILDAAGYRAVI 132
>gi|23821218|emb|CAD52976.1| putative glycine cleavage system protein H [Rhodococcus fascians
D188]
Length=140
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/126 (62%), Positives = 100/126 (80%), Gaps = 2/126 (1%)
Query 3 DIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVE 62
D P+DL YT EHEW++R+G TVR+GITDYAQ+ LGDVVFVQLP IG +VTAGE+ GEVE
Sbjct 11 DTPADLLYTPEHEWVQRTGPATVRIGITDYAQTQLGDVVFVQLPAIGDSVTAGESLGEVE 70
Query 63 STKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTL 122
STKSVSD+++P++ KV VN DLD P+ VNS PY GWL++++V SS+ AL++AL +
Sbjct 71 STKSVSDVFSPLTAKVVAVNEDLDSEPEKVNSGPYTGGWLIELEVASSE--ALDAALAPM 128
Query 123 LDAEAY 128
LDA Y
Sbjct 129 LDAAGY 134
>gi|324997670|ref|ZP_08118782.1| glycine cleavage system H protein [Pseudonocardia sp. P1]
Length=130
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/128 (64%), Positives = 99/128 (78%), Gaps = 6/128 (4%)
Query 2 SDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEV 61
S+IPSDL YT HEW+R +GD VR+GITD+AQS LGDVVFVQLP +G VTAG+T GEV
Sbjct 3 SEIPSDLTYTEAHEWVRETGDGVVRIGITDHAQSQLGDVVFVQLPTVGETVTAGDTMGEV 62
Query 62 ESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTT 121
ESTKSVSD+YAP++G+V VN L+G P+LVNS PYG GWL+D+++ +D E
Sbjct 63 ESTKSVSDIYAPVAGEVVAVNESLEGAPELVNSGPYGDGWLVDVRL--ADGGLPEG---- 116
Query 122 LLDAEAYR 129
LLDAEAYR
Sbjct 117 LLDAEAYR 124
>gi|333920804|ref|YP_004494385.1| glycine cleavage system H protein [Amycolicicoccus subflavus
DQS3-9A1]
gi|333483025|gb|AEF41585.1| Glycine cleavage system H protein [Amycolicicoccus subflavus
DQS3-9A1]
Length=134
Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/131 (62%), Positives = 97/131 (75%), Gaps = 2/131 (1%)
Query 4 IPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVES 63
IP DL YT EHEW++R+GD VR+GITDYAQ L DVVFVQLP G AVTAGE GEVES
Sbjct 6 IPDDLRYTREHEWVQRTGDTRVRIGITDYAQKQLDDVVFVQLPESGAAVTAGEPLGEVES 65
Query 64 TKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLL 123
TKSVSD+++PISG+V VN L P+LVN+ PY GWL++++V +D A LESAL L
Sbjct 66 TKSVSDIFSPISGRVIAVNEQLSNRPELVNASPYREGWLVELEV--ADSAHLESALGETL 123
Query 124 DAEAYRGTLTE 134
DA YR +T+
Sbjct 124 DAAGYREIITD 134
>gi|343928463|ref|ZP_08767911.1| glycine cleavage system H protein [Gordonia alkanivorans NBRC
16433]
gi|343761648|dbj|GAA14837.1| glycine cleavage system H protein [Gordonia alkanivorans NBRC
16433]
Length=134
Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 78/131 (60%), Positives = 97/131 (75%), Gaps = 2/131 (1%)
Query 2 SDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEV 61
S +P DL YTAEHEWI + G VR+GITD+AQ ALGDVVFVQLP G VT GE+F EV
Sbjct 4 SKVPEDLRYTAEHEWIEKIGPTAVRIGITDFAQDALGDVVFVQLPDSGAEVTVGESFAEV 63
Query 62 ESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTT 121
ESTKSVSD++ P++G VS VN LD +P+LVNSDPYG GWL++I+ ++D A L+ L
Sbjct 64 ESTKSVSDIFGPLTGTVSAVNDALDASPELVNSDPYGEGWLVEIE--AADEATLDEQLGD 121
Query 122 LLDAEAYRGTL 132
+LDA YR +
Sbjct 122 VLDAAGYRAVI 132
>gi|256392313|ref|YP_003113877.1| glycine cleavage system protein H [Catenulispora acidiphila DSM
44928]
gi|256358539|gb|ACU72036.1| glycine cleavage system H protein [Catenulispora acidiphila DSM
44928]
Length=126
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/130 (57%), Positives = 97/130 (75%), Gaps = 6/130 (4%)
Query 5 PSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVEST 64
P +L YTAEHEW+R D+VRVGITDYAQ LGD+VFVQLP +G VTAGE GE+EST
Sbjct 3 PEELKYTAEHEWVRSGDADSVRVGITDYAQGQLGDIVFVQLPDVGAKVTAGEPCGELEST 62
Query 65 KSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLD 124
KSVSDL+AP++G V+ VN++LD +P+L+N+DPYG GW+ D++ D + S + LLD
Sbjct 63 KSVSDLFAPLTGTVTAVNAELDSSPELINTDPYGEGWIFDVEPDDA------SEVEALLD 116
Query 125 AEAYRGTLTE 134
A+ Y T+ E
Sbjct 117 AKGYEATIAE 126
>gi|256379362|ref|YP_003103022.1| glycine cleavage system H protein [Actinosynnema mirum DSM 43827]
gi|255923665|gb|ACU39176.1| glycine cleavage system H protein [Actinosynnema mirum DSM 43827]
Length=126
Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/131 (56%), Positives = 99/131 (76%), Gaps = 6/131 (4%)
Query 4 IPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVES 63
IP +L YT EHEW++R+G+ TVR+GITD+AQ+ LGDVVFVQLP +G V+AG+T GEVES
Sbjct 2 IPEELKYTEEHEWVQRTGETTVRLGITDFAQAQLGDVVFVQLPELGEKVSAGQTLGEVES 61
Query 64 TKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLL 123
TKSVSD+YAP++G+V+ N LD P L+N DPYG GW++++++D +D A LL
Sbjct 62 TKSVSDIYAPLAGEVTARNDSLDQQPDLINEDPYGEGWMVELRLDDTD------AFEGLL 115
Query 124 DAEAYRGTLTE 134
DA AY+ + E
Sbjct 116 DAAAYQELVQE 126
>gi|226360056|ref|YP_002777834.1| glycine cleavage system protein H [Rhodococcus opacus B4]
gi|226238541|dbj|BAH48889.1| glycine cleavage system H-protein [Rhodococcus opacus B4]
Length=134
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/105 (68%), Positives = 87/105 (83%), Gaps = 0/105 (0%)
Query 3 DIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVE 62
+IP+D YTAEHEW+ R+G TVRVGITD+AQS LGDVVFVQLP + VTAGE+FGEVE
Sbjct 5 EIPADRRYTAEHEWVERTGPTTVRVGITDFAQSQLGDVVFVQLPAVDEDVTAGESFGEVE 64
Query 63 STKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQV 107
STKSVSD++AP++ KV N+DLDG P+LVNS PYG GWL+++ V
Sbjct 65 STKSVSDIFAPLTAKVVAANADLDGNPELVNSAPYGQGWLVELGV 109
>gi|319949171|ref|ZP_08023260.1| glycine cleavage system protein H [Dietzia cinnamea P4]
gi|319437157|gb|EFV92188.1| glycine cleavage system protein H [Dietzia cinnamea P4]
Length=134
Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/127 (59%), Positives = 95/127 (75%), Gaps = 2/127 (1%)
Query 2 SDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEV 61
+IP L YT EHEW+ R D VR+GIT+YAQS LGD+VFVQLP +G +GE FGEV
Sbjct 4 QNIPDQLRYTDEHEWVERVSDTRVRIGITEYAQSKLGDIVFVQLPDVGGETESGEPFGEV 63
Query 62 ESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTT 121
ES KSVSDLYAP+SGKV EVN+ L+ +P+LVNSDPYG GW++ +++ +DV LE+ L
Sbjct 64 ESPKSVSDLYAPLSGKVVEVNTALETSPELVNSDPYGEGWIVVLEI--ADVEDLEAQLEQ 121
Query 122 LLDAEAY 128
LD++ Y
Sbjct 122 TLDSDGY 128
>gi|284031103|ref|YP_003381034.1| glycine cleavage system H protein [Kribbella flavida DSM 17836]
gi|283810396|gb|ADB32235.1| glycine cleavage system H protein [Kribbella flavida DSM 17836]
Length=127
Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/130 (58%), Positives = 94/130 (73%), Gaps = 6/130 (4%)
Query 5 PSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVEST 64
P DL YTAEHEW++ D VRVGITD+AQ ALGD+V+VQLP +G AV AG+ GE+EST
Sbjct 3 PEDLKYTAEHEWVKAGEDGPVRVGITDFAQDALGDIVYVQLPEVGAAVRAGDACGELEST 62
Query 65 KSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLD 124
KSVSDL+AP++G V+ VN L P LVN+DPYG GWLLDI+VD E + L+D
Sbjct 63 KSVSDLFAPVNGTVTAVNEALADQPDLVNTDPYGEGWLLDIRVDD------EEEVAALMD 116
Query 125 AEAYRGTLTE 134
A+ Y+G L +
Sbjct 117 ADTYQGQLDQ 126
>gi|84496381|ref|ZP_00995235.1| glycine cleavage system protein H [Janibacter sp. HTCC2649]
gi|84383149|gb|EAP99030.1| glycine cleavage system protein H [Janibacter sp. HTCC2649]
Length=129
Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 77/131 (59%), Positives = 98/131 (75%), Gaps = 6/131 (4%)
Query 3 DIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVE 62
+ PSDL YTAEHEW+R S D VR+GIT +AQ ALGDVV+V LP +G V G+ GEVE
Sbjct 5 EYPSDLRYTAEHEWVRASEDGAVRIGITSFAQDALGDVVYVSLPAVGDTVAVGDACGEVE 64
Query 63 STKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTL 122
STKSVSDLYAP++G+V+ VN+ LD +P+LVNSDPYG GW+ +++ SD AA+E L
Sbjct 65 STKSVSDLYAPLAGEVTAVNAALDASPELVNSDPYGEGWMYELK--PSDSAAVEG----L 118
Query 123 LDAEAYRGTLT 133
LD EAY+ L+
Sbjct 119 LDLEAYQQQLS 129
>gi|145594911|ref|YP_001159208.1| glycine cleavage system H protein [Salinispora tropica CNB-440]
gi|145304248|gb|ABP54830.1| glycine cleavage system H protein [Salinispora tropica CNB-440]
Length=126
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/131 (60%), Positives = 94/131 (72%), Gaps = 7/131 (5%)
Query 4 IPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVES 63
IP DL YTAEHEW+ +GD VRVGIT +AQ ALGD+VFVQLP +G AV+ G++ GE+ES
Sbjct 2 IPEDLRYTAEHEWVAGAGDSVVRVGITHFAQDALGDIVFVQLPEVGAAVSVGDSVGEIES 61
Query 64 TKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLL 123
TKSVS++YAP+ G VS N L TP+L+NSDPY AGWL ++ V S AL LL
Sbjct 62 TKSVSEIYAPVGGTVSACNEALGDTPELINSDPYAAGWLFEVTVADS------VALDGLL 115
Query 124 DAEAYRGTLTE 134
AEAYR LTE
Sbjct 116 SAEAYR-ELTE 125
>gi|54024454|ref|YP_118696.1| glycine cleavage system protein H [Nocardia farcinica IFM 10152]
gi|81374979|sp|Q5YWV9.1|GCSH_NOCFA RecName: Full=Glycine cleavage system H protein
gi|54015962|dbj|BAD57332.1| putative glycine cleavage system protein [Nocardia farcinica
IFM 10152]
Length=132
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/128 (59%), Positives = 92/128 (72%), Gaps = 2/128 (1%)
Query 5 PSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVEST 64
P DL YT EHEW+RR G VRVGITDYAQS LGDVV+VQLP AGE+ EVEST
Sbjct 5 PEDLRYTEEHEWVRRIGPTRVRVGITDYAQSQLGDVVYVQLPDEQREAAAGESIAEVEST 64
Query 65 KSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLD 124
KSVSD+YAP++ KV VN +L P+ +N+DPYGAGWL +++V +D AAL+ L LLD
Sbjct 65 KSVSDIYAPLAAKVVAVNEELSNAPETLNADPYGAGWLFELEV--ADAAALDVTLGELLD 122
Query 125 AEAYRGTL 132
A Y+G +
Sbjct 123 AAGYQGVI 130
>gi|226306712|ref|YP_002766672.1| glycine cleavage system H-protein [Rhodococcus erythropolis PR4]
gi|226185829|dbj|BAH33933.1| glycine cleavage system H-protein [Rhodococcus erythropolis PR4]
Length=134
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/105 (65%), Positives = 85/105 (81%), Gaps = 0/105 (0%)
Query 3 DIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVE 62
D P+DL YTAEHEW++R+G +VRVGITD+AQS LGDVVFVQLP + VTAGE+ GEVE
Sbjct 5 DTPTDLRYTAEHEWVKRTGPTSVRVGITDFAQSQLGDVVFVQLPAVDEDVTAGESLGEVE 64
Query 63 STKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQV 107
STKSVSD++AP + KV N +LDG P LVN+DPY GWL++++V
Sbjct 65 STKSVSDIFAPFTAKVLAANGELDGQPDLVNTDPYNTGWLVELEV 109
>gi|326331335|ref|ZP_08197626.1| glycine cleavage system H protein [Nocardioidaceae bacterium
Broad-1]
gi|325950869|gb|EGD42918.1| glycine cleavage system H protein [Nocardioidaceae bacterium
Broad-1]
Length=128
Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 76/130 (59%), Positives = 95/130 (74%), Gaps = 8/130 (6%)
Query 5 PSDLHYTAEHEWIRRSGD--DTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVE 62
P DL YT+EHEW+R G+ +VR+GIT+YAQ ALGD+V+V +P +G + AGE+ GE+E
Sbjct 3 PEDLKYTSEHEWLRNPGETEGSVRIGITNYAQDALGDIVYVSMPALGDTIKAGESCGELE 62
Query 63 STKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTL 122
STKSVSD+YAPISG+V VN LD TP+LVN DPYG GWL +V +D A LES L
Sbjct 63 STKSVSDIYAPISGEVVAVNGSLDATPELVNDDPYGGGWLF--EVAPADPAELES----L 116
Query 123 LDAEAYRGTL 132
LDA AY +L
Sbjct 117 LDAAAYEASL 126
>gi|229494853|ref|ZP_04388606.1| glycine cleavage system H protein [Rhodococcus erythropolis SK121]
gi|229318211|gb|EEN84079.1| glycine cleavage system H protein [Rhodococcus erythropolis SK121]
Length=134
Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 68/105 (65%), Positives = 85/105 (81%), Gaps = 0/105 (0%)
Query 3 DIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVE 62
D P+DL YTAEHEW++R+G +VRVGITD+AQS LGDVVFVQLP + VTAGE+ GEVE
Sbjct 5 DTPTDLRYTAEHEWVKRTGPTSVRVGITDFAQSQLGDVVFVQLPAVDEDVTAGESLGEVE 64
Query 63 STKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQV 107
STKSVSD++AP + KV N +LDG P LVN+DPY GWL++++V
Sbjct 65 STKSVSDIFAPFTAKVLAANGELDGQPDLVNTDPYDTGWLVELEV 109
>gi|336178131|ref|YP_004583506.1| glycine cleavage system H protein [Frankia symbiont of Datisca
glomerata]
gi|334859111|gb|AEH09585.1| Glycine cleavage system H protein [Frankia symbiont of Datisca
glomerata]
Length=126
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/124 (63%), Positives = 90/124 (73%), Gaps = 7/124 (5%)
Query 5 PSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVEST 64
P DL YT EHEW+R + TVRVGIT YAQ ALGD+VFV LP +G V AG FGEVEST
Sbjct 3 PEDLKYTREHEWVR-VNEATVRVGITSYAQEALGDIVFVTLPAVGERVEAGRPFGEVEST 61
Query 65 KSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLD 124
KSVSD+YAP+SG+V N LD TP+LVNSDPYG GWL+++ VD + SA +LLD
Sbjct 62 KSVSDVYAPVSGEVIARNEVLDSTPELVNSDPYGEGWLVELAVDDT------SATVSLLD 115
Query 125 AEAY 128
A AY
Sbjct 116 AAAY 119
>gi|331699322|ref|YP_004335561.1| glycine cleavage system H protein [Pseudonocardia dioxanivorans
CB1190]
gi|326954011|gb|AEA27708.1| Glycine cleavage system H protein [Pseudonocardia dioxanivorans
CB1190]
Length=127
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/126 (62%), Positives = 92/126 (74%), Gaps = 6/126 (4%)
Query 4 IPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVES 63
IP DL YT +HEWIR D RVGITDYAQ+ LGD+VFV+LP IG+ V+AG FGEVES
Sbjct 2 IPDDLQYTDQHEWIRMVAPDIARVGITDYAQNQLGDIVFVELPEIGSPVSAGREFGEVES 61
Query 64 TKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQV-DSSDVAALESALTTL 122
TKS SDL AP+SG+V VN++L P+LVNSDPYGAGWLL+++V D S E + L
Sbjct 62 TKSTSDLVAPLSGEVVRVNTELGERPELVNSDPYGAGWLLELRVADPS-----ERSTAGL 116
Query 123 LDAEAY 128
LDA Y
Sbjct 117 LDAAGY 122
>gi|312196778|ref|YP_004016839.1| glycine cleavage system H protein [Frankia sp. EuI1c]
gi|311228114|gb|ADP80969.1| glycine cleavage system H protein [Frankia sp. EuI1c]
Length=131
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/125 (61%), Positives = 93/125 (75%), Gaps = 7/125 (5%)
Query 5 PSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVEST 64
P DL Y+ EHEW+R +G+ T+RVGIT YAQ ALGD+V+V LP +G V AGE FGEVEST
Sbjct 8 PEDLKYSREHEWVRLTGE-TLRVGITSYAQEALGDIVYVSLPEVGAQVRAGEPFGEVEST 66
Query 65 KSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLD 124
KSVSD+YAP SG+V N LDG+P+LVNSDPYG GWL+++ V A +SAL LLD
Sbjct 67 KSVSDVYAPASGEVVARNEALDGSPELVNSDPYGEGWLIEVTV------ADKSALDELLD 120
Query 125 AEAYR 129
A Y+
Sbjct 121 AAGYQ 125
>gi|309810367|ref|ZP_07704202.1| glycine cleavage system H protein [Dermacoccus sp. Ellin185]
gi|308435680|gb|EFP59477.1| glycine cleavage system H protein [Dermacoccus sp. Ellin185]
Length=129
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/128 (58%), Positives = 95/128 (75%), Gaps = 6/128 (4%)
Query 5 PSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVEST 64
P+DL YT +HEW+ G+ TVRVGIT YAQ ALGDVV+V LP +G VTAGE+ GEVEST
Sbjct 7 PADLRYTEDHEWVADKGEGTVRVGITSYAQDALGDVVYVSLPAVGDTVTAGESCGEVEST 66
Query 65 KSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLD 124
KSVSDLY+P+ G++ VN LD P VN+DPY +GW+ +I+V SD +A+E+ L+D
Sbjct 67 KSVSDLYSPLDGEIVAVNDTLDAEPGTVNTDPYESGWMFEIRV--SDASAVEA----LMD 120
Query 125 AEAYRGTL 132
EAYR +L
Sbjct 121 VEAYRASL 128
>gi|317124947|ref|YP_004099059.1| glycine cleavage system protein H [Intrasporangium calvum DSM
43043]
gi|315589035|gb|ADU48332.1| glycine cleavage system H protein [Intrasporangium calvum DSM
43043]
Length=130
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/132 (57%), Positives = 96/132 (73%), Gaps = 7/132 (5%)
Query 3 DIPSDLHYTAEHEWIRRSGDD-TVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEV 61
D PSDL YT++HEW+R + DD VRVGIT +AQ ALGDVV+V LP +G V G+ GEV
Sbjct 5 DYPSDLRYTSDHEWVREADDDGVVRVGITSFAQDALGDVVYVSLPAVGDTVAVGDACGEV 64
Query 62 ESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTT 121
ESTKSVSD+YAP++G+V+ VN LD TP+LVNSDPYG GW+ +++++ SAL
Sbjct 65 ESTKSVSDIYAPLAGEVTAVNPALDATPELVNSDPYGEGWMFELRLEDP------SALEG 118
Query 122 LLDAEAYRGTLT 133
LLD+ Y TL+
Sbjct 119 LLDSNGYVATLS 130
>gi|255326205|ref|ZP_05367291.1| glycine cleavage system H protein [Rothia mucilaginosa ATCC 25296]
gi|283458405|ref|YP_003363029.1| glycine cleavage system H protein [Rothia mucilaginosa DY-18]
gi|255296659|gb|EET75990.1| glycine cleavage system H protein [Rothia mucilaginosa ATCC 25296]
gi|283134444|dbj|BAI65209.1| glycine cleavage system H protein [Rothia mucilaginosa DY-18]
Length=130
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/135 (54%), Positives = 102/135 (76%), Gaps = 7/135 (5%)
Query 1 VSDIPSDLHYTAEHEWIRR-SGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFG 59
+S++P++L YT+EHEW+ + + TVRVGITD+AQ ALGDVV+V LP +G +V A ++FG
Sbjct 1 MSNVPAELSYTSEHEWVSALTAEGTVRVGITDHAQDALGDVVYVDLPSVGDSVAAEDSFG 60
Query 60 EVESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESAL 119
E+ESTKSVSDL+API+G++ VN L+ P LVNSDPYG GW+++I+ +++D L
Sbjct 61 EIESTKSVSDLFAPIAGEIVAVNEGLEDDPALVNSDPYGEGWIIEIRPENAD------DL 114
Query 120 TTLLDAEAYRGTLTE 134
LLDAEAY+ L +
Sbjct 115 ANLLDAEAYKAELAK 129
>gi|239917887|ref|YP_002957445.1| glycine cleavage system H protein [Micrococcus luteus NCTC 2665]
gi|289704981|ref|ZP_06501396.1| glycine cleavage system H protein [Micrococcus luteus SK58]
gi|259647457|sp|C5CAI7.1|GCSH_MICLC RecName: Full=Glycine cleavage system H protein
gi|239839094|gb|ACS30891.1| glycine cleavage system H protein [Micrococcus luteus NCTC 2665]
gi|289558317|gb|EFD51593.1| glycine cleavage system H protein [Micrococcus luteus SK58]
Length=128
Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 78/129 (61%), Positives = 92/129 (72%), Gaps = 7/129 (5%)
Query 1 VSDIPSDLHYTAEHEWIRRSGD-DTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFG 59
+S IP L Y+AEHEWI +G TVRVGITD+AQ ALGDVV+V LP +GT VTAG G
Sbjct 1 MSSIPEGLKYSAEHEWIAEAGAAGTVRVGITDFAQDALGDVVYVDLPEVGTEVTAGTAVG 60
Query 60 EVESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESAL 119
EVESTKSVSD+YAP+SG V+ VN +LDG P LVNS PY GWL +I + A E+ L
Sbjct 61 EVESTKSVSDIYAPVSGTVAAVNDELDGEPGLVNSAPYEGGWLFEITL------ADEAQL 114
Query 120 TTLLDAEAY 128
L+DAE Y
Sbjct 115 EGLMDAEGY 123
>gi|296140043|ref|YP_003647286.1| glycine cleavage system protein H [Tsukamurella paurometabola
DSM 20162]
gi|296028177|gb|ADG78947.1| glycine cleavage system H protein [Tsukamurella paurometabola
DSM 20162]
Length=134
Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/131 (54%), Positives = 95/131 (73%), Gaps = 2/131 (1%)
Query 4 IPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVES 63
P +L YT +HEW+ + D VR+GIT+YAQ LGDVVFVQLP VT+G++F EVES
Sbjct 5 FPGELLYTPDHEWLLKKSDTVVRIGITEYAQDQLGDVVFVQLPDDDAEVTSGDSFAEVES 64
Query 64 TKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLL 123
TKSVSD++AP++G+V VN +LD +P L+NSDPYG GW+++I+ S + LE+AL LL
Sbjct 65 TKSVSDIFAPLAGRVVAVNGELDSSPDLINSDPYGEGWIVEIEAPSPE--DLEAALGELL 122
Query 124 DAEAYRGTLTE 134
DA+ Y+ E
Sbjct 123 DADGYKALTAE 133
Lambda K H
0.311 0.130 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129924441710
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40