BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1830
Length=225
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608967|ref|NP_216346.1| hypothetical protein Rv1830 [Mycoba... 452 2e-125
gi|167968078|ref|ZP_02550355.1| hypothetical protein MtubH3_0859... 424 3e-117
gi|15828119|ref|NP_302382.1| hypothetical protein ML2073 [Mycoba... 400 9e-110
gi|41407641|ref|NP_960477.1| hypothetical protein MAP1543 [Mycob... 397 8e-109
gi|183982714|ref|YP_001851005.1| regulatory protein [Mycobacteri... 393 1e-107
gi|240171755|ref|ZP_04750414.1| hypothetical protein MkanA1_2074... 385 3e-105
gi|118465947|ref|YP_882071.1| MerR family transcriptional regula... 382 2e-104
gi|254823236|ref|ZP_05228237.1| hypothetical protein MintA_25124... 377 5e-103
gi|118618438|ref|YP_906770.1| regulatory protein [Mycobacterium ... 377 9e-103
gi|296164816|ref|ZP_06847375.1| MerR family transcriptional regu... 372 3e-101
gi|333990565|ref|YP_004523179.1| regulatory protein [Mycobacteri... 368 4e-100
gi|145223985|ref|YP_001134663.1| MerR family transcriptional reg... 364 4e-99
gi|315444317|ref|YP_004077196.1| hypothetical protein Mspyr1_273... 364 6e-99
gi|108799807|ref|YP_640004.1| MerR family transcriptional regula... 360 6e-98
gi|126435451|ref|YP_001071142.1| MerR family transcriptional reg... 360 1e-97
gi|120404111|ref|YP_953940.1| MerR family transcriptional regula... 358 2e-97
gi|169629492|ref|YP_001703141.1| putative HTH-type transcription... 357 8e-97
gi|342861266|ref|ZP_08717914.1| hypothetical protein MCOL_20381 ... 354 7e-96
gi|118472612|ref|YP_887947.1| MerR family transcriptional regula... 352 3e-95
gi|226306708|ref|YP_002766668.1| MerR family transcriptional reg... 326 2e-87
gi|312139830|ref|YP_004007166.1| merr family transcriptional reg... 325 2e-87
gi|226360052|ref|YP_002777830.1| MerR family transcriptional reg... 325 2e-87
gi|23821222|emb|CAD52980.1| hypothetical protein [Rhodococcus fa... 325 4e-87
gi|229494856|ref|ZP_04388609.1| transcriptional regulator, MerR ... 324 7e-87
gi|111017921|ref|YP_700893.1| MerR family transcriptional regula... 322 3e-86
gi|343928467|ref|ZP_08767915.1| putative MerR family transcripti... 322 3e-86
gi|326384962|ref|ZP_08206636.1| regulatory protein MerR [Gordoni... 317 1e-84
gi|262202675|ref|YP_003273883.1| MerR family transcriptional reg... 310 1e-82
gi|333920800|ref|YP_004494381.1| putative MerR family transcript... 305 5e-81
gi|296140039|ref|YP_003647282.1| MerR family transcriptional reg... 302 3e-80
gi|54024458|ref|YP_118700.1| hypothetical protein nfa24890 [Noca... 292 2e-77
gi|134100378|ref|YP_001106039.1| MerR family transcriptional reg... 292 3e-77
gi|256379358|ref|YP_003103018.1| MerR family transcriptional reg... 288 3e-76
gi|302527598|ref|ZP_07279940.1| transcriptional regulator [Strep... 278 3e-73
gi|300786861|ref|YP_003767152.1| MerR family transcriptional reg... 278 4e-73
gi|324997673|ref|ZP_08118785.1| MerR family transcriptional regu... 278 5e-73
gi|257056258|ref|YP_003134090.1| hypothetical protein Svir_22550... 271 8e-71
gi|331696972|ref|YP_004333211.1| regulatory protein MerR [Pseudo... 268 3e-70
gi|258654132|ref|YP_003203288.1| MerR family transcriptional reg... 263 2e-68
gi|319949167|ref|ZP_08023256.1| putative MerR family transcripti... 260 1e-67
gi|284991173|ref|YP_003409727.1| MerR family transcriptional reg... 250 1e-64
gi|25028132|ref|NP_738186.1| hypothetical protein CE1576 [Coryne... 246 1e-63
gi|259507190|ref|ZP_05750090.1| MerR family transcriptional regu... 246 2e-63
gi|225021499|ref|ZP_03710691.1| hypothetical protein CORMATOL_01... 244 1e-62
gi|296394667|ref|YP_003659551.1| MerR family transcriptional reg... 242 2e-62
gi|341824812|gb|AEK92333.1| MerR family transcriptional regulato... 241 5e-62
gi|300858421|ref|YP_003783404.1| MerR family transcriptional reg... 241 5e-62
gi|317506033|ref|ZP_07963863.1| regulatory protein [Segniliparus... 241 7e-62
gi|305680782|ref|ZP_07403589.1| conserved hypothetical protein [... 240 9e-62
gi|337290676|ref|YP_004629697.1| MerR family transcription regul... 240 1e-61
>gi|15608967|ref|NP_216346.1| hypothetical protein Rv1830 [Mycobacterium tuberculosis H37Rv]
gi|15841300|ref|NP_336337.1| hypothetical protein MT1879 [Mycobacterium tuberculosis CDC1551]
gi|31793020|ref|NP_855513.1| hypothetical protein Mb1861 [Mycobacterium bovis AF2122/97]
49 more sequence titles
Length=225
Score = 452 bits (1162), Expect = 2e-125, Method: Compositional matrix adjust.
Identities = 224/225 (99%), Positives = 225/225 (100%), Gaps = 0/225 (0%)
Query 1 VTQLVTRARSARGSTLGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPD 60
+TQLVTRARSARGSTLGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPD
Sbjct 1 MTQLVTRARSARGSTLGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPD 60
Query 61 ELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRL 120
ELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRL
Sbjct 61 ELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRL 120
Query 121 LDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIA 180
LDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIA
Sbjct 121 LDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIA 180
Query 181 VSGAMRELTGVIADFHGERADGGESIAAPEDELASRRKHRDRKIG 225
VSGAMRELTGVIADFHGERADGGESIAAPEDELASRRKHRDRKIG
Sbjct 181 VSGAMRELTGVIADFHGERADGGESIAAPEDELASRRKHRDRKIG 225
>gi|167968078|ref|ZP_02550355.1| hypothetical protein MtubH3_08595 [Mycobacterium tuberculosis
H37Ra]
gi|254550840|ref|ZP_05141287.1| hypothetical protein Mtube_10336 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|294996740|ref|ZP_06802431.1| hypothetical protein Mtub2_20098 [Mycobacterium tuberculosis
210]
30 more sequence titles
Length=210
Score = 424 bits (1091), Expect = 3e-117, Method: Compositional matrix adjust.
Identities = 209/210 (99%), Positives = 210/210 (100%), Gaps = 0/210 (0%)
Query 16 LGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAG 75
+GEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAG
Sbjct 1 MGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAG 60
Query 76 ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 135
ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD
Sbjct 61 ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 120
Query 136 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF 195
HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF
Sbjct 121 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF 180
Query 196 HGERADGGESIAAPEDELASRRKHRDRKIG 225
HGERADGGESIAAPEDELASRRKHRDRKIG
Sbjct 181 HGERADGGESIAAPEDELASRRKHRDRKIG 210
>gi|15828119|ref|NP_302382.1| hypothetical protein ML2073 [Mycobacterium leprae TN]
gi|221230596|ref|YP_002504012.1| hypothetical protein MLBr_02073 [Mycobacterium leprae Br4923]
gi|2578380|emb|CAA15465.1| hypothetical protein MLCB1788.33c [Mycobacterium leprae]
gi|13093673|emb|CAC31028.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933703|emb|CAR72170.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=231
Score = 400 bits (1027), Expect = 9e-110, Method: Compositional matrix adjust.
Identities = 205/231 (89%), Positives = 210/231 (91%), Gaps = 6/231 (2%)
Query 1 VTQLVTRARSARGSTLGEQPRQDQLDFADH-----TGTAGD-GNDGAAAASGPVQPGLFP 54
+T LVTRARSARG+T+ EQPRQ QLD AD+ T GD G +G A SGP QPGLFP
Sbjct 1 MTHLVTRARSARGNTVSEQPRQGQLDLADYRDTPTATTHGDIGLNGPTAVSGPAQPGLFP 60
Query 55 DDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVL 114
DDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIR AAGSGSQRLYSFKDILVL
Sbjct 61 DDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRGAAGSGSQRLYSFKDILVL 120
Query 115 KIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQ 174
KIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQ
Sbjct 121 KIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQ 180
Query 175 GVFGIAVSGAMRELTGVIADFHGERADGGESIAAPEDELASRRKHRDRKIG 225
GVFGIAVSGAMRELTGVI DF GERADGGESIAAPEDELASRRKHRDRKIG
Sbjct 181 GVFGIAVSGAMRELTGVIDDFRGERADGGESIAAPEDELASRRKHRDRKIG 231
>gi|41407641|ref|NP_960477.1| hypothetical protein MAP1543 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395994|gb|AAS03860.1| hypothetical protein MAP_1543 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=225
Score = 397 bits (1019), Expect = 8e-109, Method: Compositional matrix adjust.
Identities = 199/224 (89%), Positives = 206/224 (92%), Gaps = 1/224 (0%)
Query 2 TQLVTRARSARGSTLGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPDE 61
TQ TRARS G+T+ EQPRQ+QL+ A+ G AG G AA+ PVQPGLFPDDSVPDE
Sbjct 3 TQPPTRARSREGTTVSEQPRQEQLNLAED-GNAGTGERSVTAAAAPVQPGLFPDDSVPDE 61
Query 62 LVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLL 121
LVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLL
Sbjct 62 LVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLL 121
Query 122 DTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAV 181
DTGISLHNIRVAVDHLRQRGV+DLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAV
Sbjct 122 DTGISLHNIRVAVDHLRQRGVEDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAV 181
Query 182 SGAMRELTGVIADFHGERADGGESIAAPEDELASRRKHRDRKIG 225
SGAMRELTGVIADF GERADGGESIA PEDELASRRKHRDRKIG
Sbjct 182 SGAMRELTGVIADFPGERADGGESIAEPEDELASRRKHRDRKIG 225
>gi|183982714|ref|YP_001851005.1| regulatory protein [Mycobacterium marinum M]
gi|183176040|gb|ACC41150.1| conserved regulatory protein [Mycobacterium marinum M]
Length=232
Score = 393 bits (1009), Expect = 1e-107, Method: Compositional matrix adjust.
Identities = 196/220 (90%), Positives = 204/220 (93%), Gaps = 0/220 (0%)
Query 6 TRARSARGSTLGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGY 65
T ARSARG+T+ +QPRQ+QLD A + +G+ +AA PVQ GLFPDDSVPDELVGY
Sbjct 13 TTARSARGNTVSDQPRQEQLDLAANPTAGTNGSYDGSAAGEPVQQGLFPDDSVPDELVGY 72
Query 66 RGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGI 125
RGPSACQIAGITYRQLDYWARTSLVVPSIR AAGSGSQRLYSFKDILVLKIVKRLLDTGI
Sbjct 73 RGPSACQIAGITYRQLDYWARTSLVVPSIRGAAGSGSQRLYSFKDILVLKIVKRLLDTGI 132
Query 126 SLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAM 185
SLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAM
Sbjct 133 SLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAM 192
Query 186 RELTGVIADFHGERADGGESIAAPEDELASRRKHRDRKIG 225
RELTGVIADFHGERADGGESIAAPEDELASRRKHRDRKIG
Sbjct 193 RELTGVIADFHGERADGGESIAAPEDELASRRKHRDRKIG 232
>gi|240171755|ref|ZP_04750414.1| hypothetical protein MkanA1_20745 [Mycobacterium kansasii ATCC
12478]
Length=208
Score = 385 bits (989), Expect = 3e-105, Method: Compositional matrix adjust.
Identities = 192/210 (92%), Positives = 197/210 (94%), Gaps = 2/210 (0%)
Query 16 LGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAG 75
+ E+PRQ+QLD ADH TA G G A + PVQPGLFPDDSVPDELVGYRGPSACQIAG
Sbjct 1 MSERPRQEQLDLADHATTAAHGAHGGA--TEPVQPGLFPDDSVPDELVGYRGPSACQIAG 58
Query 76 ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 135
ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD
Sbjct 59 ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 118
Query 136 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF 195
HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIA+F
Sbjct 119 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIAEF 178
Query 196 HGERADGGESIAAPEDELASRRKHRDRKIG 225
HGERADGGESIAAPEDELASRRK RDRKIG
Sbjct 179 HGERADGGESIAAPEDELASRRKQRDRKIG 208
>gi|118465947|ref|YP_882071.1| MerR family transcriptional regulator [Mycobacterium avium 104]
gi|254775361|ref|ZP_05216877.1| hypothetical protein MaviaA2_11916 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118167234|gb|ABK68131.1| transcriptional regulator, MerR family protein [Mycobacterium
avium 104]
gi|336457593|gb|EGO36598.1| hypothetical protein MAPs_21500 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=209
Score = 382 bits (981), Expect = 2e-104, Method: Compositional matrix adjust.
Identities = 190/210 (91%), Positives = 196/210 (94%), Gaps = 1/210 (0%)
Query 16 LGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAG 75
+ EQPRQ+QL+ A+ G AG G AA+ PVQPGLFPDDSVPDELVGYRGPSACQIAG
Sbjct 1 MSEQPRQEQLNLAED-GNAGTGERSVTAAAAPVQPGLFPDDSVPDELVGYRGPSACQIAG 59
Query 76 ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 135
ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD
Sbjct 60 ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 119
Query 136 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF 195
HLRQRGV+DLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF
Sbjct 120 HLRQRGVEDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF 179
Query 196 HGERADGGESIAAPEDELASRRKHRDRKIG 225
GERADGGESIA PEDELASRRKHRDRKIG
Sbjct 180 PGERADGGESIAEPEDELASRRKHRDRKIG 209
>gi|254823236|ref|ZP_05228237.1| hypothetical protein MintA_25124 [Mycobacterium intracellulare
ATCC 13950]
Length=209
Score = 377 bits (969), Expect = 5e-103, Method: Compositional matrix adjust.
Identities = 189/210 (90%), Positives = 194/210 (93%), Gaps = 1/210 (0%)
Query 16 LGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAG 75
+ EQPRQ+QL+ A+ GT + AA PVQPGLFPDDSVPDELVGYRGPSACQIAG
Sbjct 1 MSEQPRQEQLNLAEQ-GTDASSDRSITAAGPPVQPGLFPDDSVPDELVGYRGPSACQIAG 59
Query 76 ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 135
ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD
Sbjct 60 ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 119
Query 136 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF 195
HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF
Sbjct 120 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF 179
Query 196 HGERADGGESIAAPEDELASRRKHRDRKIG 225
GERADGGESIA PEDELASRRKHRDRKIG
Sbjct 180 PGERADGGESIAEPEDELASRRKHRDRKIG 209
>gi|118618438|ref|YP_906770.1| regulatory protein [Mycobacterium ulcerans Agy99]
gi|118570548|gb|ABL05299.1| conserved regulatory protein [Mycobacterium ulcerans Agy99]
Length=210
Score = 377 bits (967), Expect = 9e-103, Method: Compositional matrix adjust.
Identities = 187/210 (90%), Positives = 194/210 (93%), Gaps = 0/210 (0%)
Query 16 LGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAG 75
+ +QPRQ+QLD A + +G+ +AA PVQ GLFPDDSVPDELVGYRGPSACQIA
Sbjct 1 MSDQPRQEQLDLAANPTAGTNGSYDGSAAGEPVQQGLFPDDSVPDELVGYRGPSACQIAS 60
Query 76 ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 135
ITYRQLDYWARTSLVVPSIR AAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD
Sbjct 61 ITYRQLDYWARTSLVVPSIRGAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 120
Query 136 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF 195
HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF
Sbjct 121 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF 180
Query 196 HGERADGGESIAAPEDELASRRKHRDRKIG 225
HGERADGGESIAAPEDELASRRKHRDRKIG
Sbjct 181 HGERADGGESIAAPEDELASRRKHRDRKIG 210
>gi|296164816|ref|ZP_06847375.1| MerR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899830|gb|EFG79277.1| MerR family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=201
Score = 372 bits (954), Expect = 3e-101, Method: Compositional matrix adjust.
Identities = 187/210 (90%), Positives = 191/210 (91%), Gaps = 9/210 (4%)
Query 16 LGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAG 75
+ EQPRQ+QLD A+H +AA PVQPGLFPDDSVPDELVGYRGPSACQIAG
Sbjct 1 MSEQPRQEQLDLAEH---------ASAAPQAPVQPGLFPDDSVPDELVGYRGPSACQIAG 51
Query 76 ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 135
ITYRQLDYWARTSLVVPSIR AAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD
Sbjct 52 ITYRQLDYWARTSLVVPSIRGAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 111
Query 136 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF 195
HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF
Sbjct 112 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF 171
Query 196 HGERADGGESIAAPEDELASRRKHRDRKIG 225
GERADGGESIAAPEDELASRRK R RKIG
Sbjct 172 PGERADGGESIAAPEDELASRRKDRARKIG 201
>gi|333990565|ref|YP_004523179.1| regulatory protein [Mycobacterium sp. JDM601]
gi|333486533|gb|AEF35925.1| regulatory protein [Mycobacterium sp. JDM601]
Length=212
Score = 368 bits (945), Expect = 4e-100, Method: Compositional matrix adjust.
Identities = 189/213 (89%), Positives = 196/213 (93%), Gaps = 4/213 (1%)
Query 16 LGEQPRQDQLDFADHTGTAGDGNDGAAAASG---PVQPGLFPDDSVPDELVGYRGPSACQ 72
+GEQP Q+QLDFA + + DG + AA ASG PVQ GLFPDDSVPDELVGYRGPSACQ
Sbjct 1 MGEQPGQEQLDFAGPSESGSDG-EVAATASGVGEPVQAGLFPDDSVPDELVGYRGPSACQ 59
Query 73 IAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRV 132
IAGITYRQLDYWARTSLVVPSIR AAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRV
Sbjct 60 IAGITYRQLDYWARTSLVVPSIRGAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRV 119
Query 133 AVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVI 192
AVDHLR+RGV+DLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVI
Sbjct 120 AVDHLRERGVRDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVI 179
Query 193 ADFHGERADGGESIAAPEDELASRRKHRDRKIG 225
ADF GERADGGESIAAPEDELASRRK RDRK G
Sbjct 180 ADFPGERADGGESIAAPEDELASRRKFRDRKTG 212
>gi|145223985|ref|YP_001134663.1| MerR family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|145216471|gb|ABP45875.1| putative transcriptional regulator, MerR family [Mycobacterium
gilvum PYR-GCK]
Length=234
Score = 364 bits (935), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 187/215 (87%), Positives = 192/215 (90%), Gaps = 5/215 (2%)
Query 16 LGEQPRQDQLDFADHTGT-AGDGNDGAA----AASGPVQPGLFPDDSVPDELVGYRGPSA 70
+G+ PRQ QLD +GT +G G A S PVQ GLFPDDSVPDELVGYRGPSA
Sbjct 20 VGDTPRQGQLDLTTDSGTDSGTGTTETEGQPRAVSEPVQGGLFPDDSVPDELVGYRGPSA 79
Query 71 CQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNI 130
CQIAGITYRQLDYWARTSLVVPSIR AAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNI
Sbjct 80 CQIAGITYRQLDYWARTSLVVPSIRGAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNI 139
Query 131 RVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTG 190
RVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTG
Sbjct 140 RVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTG 199
Query 191 VIADFHGERADGGESIAAPEDELASRRKHRDRKIG 225
IADF GERADGGESI+APEDELASRRKHRDRKIG
Sbjct 200 AIADFPGERADGGESISAPEDELASRRKHRDRKIG 234
>gi|315444317|ref|YP_004077196.1| hypothetical protein Mspyr1_27310 [Mycobacterium sp. Spyr1]
gi|315262620|gb|ADT99361.1| hypothetical protein Mspyr1_27310 [Mycobacterium sp. Spyr1]
Length=215
Score = 364 bits (934), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 187/215 (87%), Positives = 192/215 (90%), Gaps = 5/215 (2%)
Query 16 LGEQPRQDQLDFADHTGT-AGDGNDGAA----AASGPVQPGLFPDDSVPDELVGYRGPSA 70
+G+ PRQ QLD +GT +G G A S PVQ GLFPDDSVPDELVGYRGPSA
Sbjct 1 MGDTPRQGQLDLTTDSGTDSGTGTTETEGQPRAVSEPVQGGLFPDDSVPDELVGYRGPSA 60
Query 71 CQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNI 130
CQIAGITYRQLDYWARTSLVVPSIR AAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNI
Sbjct 61 CQIAGITYRQLDYWARTSLVVPSIRGAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNI 120
Query 131 RVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTG 190
RVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTG
Sbjct 121 RVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTG 180
Query 191 VIADFHGERADGGESIAAPEDELASRRKHRDRKIG 225
IADF GERADGGESI+APEDELASRRKHRDRKIG
Sbjct 181 AIADFPGERADGGESISAPEDELASRRKHRDRKIG 215
>gi|108799807|ref|YP_640004.1| MerR family transcriptional regulator [Mycobacterium sp. MCS]
gi|119868917|ref|YP_938869.1| MerR family transcriptional regulator [Mycobacterium sp. KMS]
gi|108770226|gb|ABG08948.1| transcriptional regulator, MerR family [Mycobacterium sp. MCS]
gi|119695006|gb|ABL92079.1| putative transcriptional regulator, MerR family [Mycobacterium
sp. KMS]
Length=206
Score = 360 bits (925), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 183/210 (88%), Positives = 187/210 (90%), Gaps = 4/210 (1%)
Query 16 LGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAG 75
+G+ PRQ +LD + T A S PVQ GLFPDDSVPDELVGYRGPSACQIAG
Sbjct 1 MGDTPRQGELDLS----TENTPEPAARVPSEPVQAGLFPDDSVPDELVGYRGPSACQIAG 56
Query 76 ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 135
ITYRQLDYWARTSLVVPSIR AAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD
Sbjct 57 ITYRQLDYWARTSLVVPSIRGAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 116
Query 136 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF 195
HLRQRGV DLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTG IADF
Sbjct 117 HLRQRGVSDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGAIADF 176
Query 196 HGERADGGESIAAPEDELASRRKHRDRKIG 225
GERADGGESIAAPEDELASRRKHRDRKIG
Sbjct 177 PGERADGGESIAAPEDELASRRKHRDRKIG 206
>gi|126435451|ref|YP_001071142.1| MerR family transcriptional regulator [Mycobacterium sp. JLS]
gi|126235251|gb|ABN98651.1| putative transcriptional regulator, MerR family [Mycobacterium
sp. JLS]
Length=206
Score = 360 bits (923), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 182/210 (87%), Positives = 187/210 (90%), Gaps = 4/210 (1%)
Query 16 LGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAG 75
+G+ PRQ +LD + T A + PVQ GLFPDDSVPDELVGYRGPSACQIAG
Sbjct 1 MGDTPRQGELDLS----TENTPEPAARVPNEPVQAGLFPDDSVPDELVGYRGPSACQIAG 56
Query 76 ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 135
ITYRQLDYWARTSLVVPSIR AAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD
Sbjct 57 ITYRQLDYWARTSLVVPSIRGAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 116
Query 136 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF 195
HLRQRGV DLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTG IADF
Sbjct 117 HLRQRGVSDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGAIADF 176
Query 196 HGERADGGESIAAPEDELASRRKHRDRKIG 225
GERADGGESIAAPEDELASRRKHRDRKIG
Sbjct 177 PGERADGGESIAAPEDELASRRKHRDRKIG 206
>gi|120404111|ref|YP_953940.1| MerR family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119956929|gb|ABM13934.1| putative transcriptional regulator, MerR family [Mycobacterium
vanbaalenii PYR-1]
Length=207
Score = 358 bits (920), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 181/210 (87%), Positives = 190/210 (91%), Gaps = 3/210 (1%)
Query 16 LGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAG 75
+G+ PRQ++LD TG++ + + PVQ GLFPDDSVPDELVGYRGPSACQIAG
Sbjct 1 MGDTPRQEELDL---TGSSPQPDPLPRVVAEPVQAGLFPDDSVPDELVGYRGPSACQIAG 57
Query 76 ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 135
ITYRQLDYWARTSLVVPSIR AAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD
Sbjct 58 ITYRQLDYWARTSLVVPSIRGAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 117
Query 136 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF 195
HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTG IADF
Sbjct 118 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGAIADF 177
Query 196 HGERADGGESIAAPEDELASRRKHRDRKIG 225
GERADGGESI+APEDELASRRK RDRKIG
Sbjct 178 PGERADGGESISAPEDELASRRKSRDRKIG 207
>gi|169629492|ref|YP_001703141.1| putative HTH-type transcriptional regulator [Mycobacterium abscessus
ATCC 19977]
gi|169241459|emb|CAM62487.1| Putative HTH-type transcriptional regulator [Mycobacterium abscessus]
Length=207
Score = 357 bits (916), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 178/208 (86%), Positives = 189/208 (91%), Gaps = 3/208 (1%)
Query 18 EQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAGIT 77
EQP+Q QL+ G AG + +A +GPVQPGLFPDDSVPD+LVGYRGPSACQ+AGIT
Sbjct 3 EQPQQGQLEMTLDNGAAGSVD---SATTGPVQPGLFPDDSVPDQLVGYRGPSACQVAGIT 59
Query 78 YRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHL 137
YRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISL NIRVAV+HL
Sbjct 60 YRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLQNIRVAVEHL 119
Query 138 RQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHG 197
RQRGV+DLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTG IA+F G
Sbjct 120 RQRGVEDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGAIAEFPG 179
Query 198 ERADGGESIAAPEDELASRRKHRDRKIG 225
ERADGGE+I APEDELASRRK R RKIG
Sbjct 180 ERADGGEAIEAPEDELASRRKDRARKIG 207
>gi|342861266|ref|ZP_08717914.1| hypothetical protein MCOL_20381 [Mycobacterium colombiense CECT
3035]
gi|342131166|gb|EGT84447.1| hypothetical protein MCOL_20381 [Mycobacterium colombiense CECT
3035]
Length=178
Score = 354 bits (908), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 175/178 (99%), Positives = 176/178 (99%), Gaps = 0/178 (0%)
Query 48 VQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYS 107
+QPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYS
Sbjct 1 MQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYS 60
Query 108 FKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVV 167
FKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVV
Sbjct 61 FKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVV 120
Query 168 DLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESIAAPEDELASRRKHRDRKIG 225
DLLQGGQGVFGIAVSGAMRELTGVIADF GERADGGESIA PEDELASRRKHRDRKIG
Sbjct 121 DLLQGGQGVFGIAVSGAMRELTGVIADFPGERADGGESIAEPEDELASRRKHRDRKIG 178
>gi|118472612|ref|YP_887947.1| MerR family transcriptional regulator [Mycobacterium smegmatis
str. MC2 155]
gi|118173899|gb|ABK74795.1| transcriptional regulator, MerR family protein [Mycobacterium
smegmatis str. MC2 155]
Length=195
Score = 352 bits (902), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 175/182 (97%), Positives = 177/182 (98%), Gaps = 0/182 (0%)
Query 44 ASGPVQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQ 103
+S PVQ GLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQ
Sbjct 14 SSEPVQAGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQ 73
Query 104 RLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSA 163
RLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSA
Sbjct 74 RLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSA 133
Query 164 EEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESIAAPEDELASRRKHRDRK 223
EEVVDLLQGGQGVFGIAVSGAMRELTGVIADF ERADGGE+IAAPEDELASRRK RDRK
Sbjct 134 EEVVDLLQGGQGVFGIAVSGAMRELTGVIADFPSERADGGEAIAAPEDELASRRKSRDRK 193
Query 224 IG 225
IG
Sbjct 194 IG 195
>gi|226306708|ref|YP_002766668.1| MerR family transcriptional regulator [Rhodococcus erythropolis
PR4]
gi|226185825|dbj|BAH33929.1| putative MerR family transcriptional regulator [Rhodococcus erythropolis
PR4]
Length=205
Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 165/196 (85%), Positives = 172/196 (88%), Gaps = 1/196 (0%)
Query 31 TGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLV 90
TG A A +S +QPGLFPDDS+PD+LVGYR PSACQIAGITYRQLDYWARTSLV
Sbjct 10 TGIADSAEPTAEMSSEELQPGLFPDDSIPDDLVGYRVPSACQIAGITYRQLDYWARTSLV 69
Query 91 VPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITL 150
VPSIR AAGSGSQRLYSFKDILVLKIVKRLLDTGISL NIRVAVDHLR+RGV+DLANITL
Sbjct 70 VPSIRGAAGSGSQRLYSFKDILVLKIVKRLLDTGISLQNIRVAVDHLRKRGVRDLANITL 129
Query 151 FSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESIAAPE 210
FSDGTTVYECTS EEVVDLLQGGQGVFGIAVSGAMRELTG IADF ERADGGES PE
Sbjct 130 FSDGTTVYECTSPEEVVDLLQGGQGVFGIAVSGAMRELTGTIADFPAERADGGESDPNPE 189
Query 211 DELASRRKHR-DRKIG 225
DELASRRK+R RK G
Sbjct 190 DELASRRKNRASRKTG 205
>gi|312139830|ref|YP_004007166.1| merr family transcriptional regulator [Rhodococcus equi 103S]
gi|325674358|ref|ZP_08154047.1| MerR family transcriptional regulator [Rhodococcus equi ATCC
33707]
gi|311889169|emb|CBH48483.1| MerR family transcriptional regulator [Rhodococcus equi 103S]
gi|325555038|gb|EGD24711.1| MerR family transcriptional regulator [Rhodococcus equi ATCC
33707]
Length=208
Score = 325 bits (834), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 169/212 (80%), Positives = 181/212 (86%), Gaps = 6/212 (2%)
Query 16 LGEQPRQDQLDFADH-TGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIA 74
+G++P++ QLD AD TG A + VQPGLFPDD+VPDELVGYR P+ACQIA
Sbjct 1 MGDRPQEQQLDLADEATGQASI----ETSTVDDVQPGLFPDDTVPDELVGYRVPTACQIA 56
Query 75 GITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAV 134
GITYRQLDYWART+LVVPSIR AAGSGSQRLYSFKDILVLKIVKRLLDTGISL NIRVAV
Sbjct 57 GITYRQLDYWARTNLVVPSIRGAAGSGSQRLYSFKDILVLKIVKRLLDTGISLQNIRVAV 116
Query 135 DHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIAD 194
DHLRQRGV DLA ITLFSDGTTVYECTS EEVVDLLQGGQGVFGIAVSGAMRELTG IAD
Sbjct 117 DHLRQRGVGDLARITLFSDGTTVYECTSPEEVVDLLQGGQGVFGIAVSGAMRELTGTIAD 176
Query 195 FHGERADGGESIAAPEDELASRRKHRD-RKIG 225
F ERADGGE+ +PEDELASRRK+R RK G
Sbjct 177 FPAERADGGEATQSPEDELASRRKNRGARKTG 208
>gi|226360052|ref|YP_002777830.1| MerR family transcriptional regulator [Rhodococcus opacus B4]
gi|226238537|dbj|BAH48885.1| putative MerR family transcriptional regulator [Rhodococcus opacus
B4]
Length=206
Score = 325 bits (834), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 167/211 (80%), Positives = 181/211 (86%), Gaps = 6/211 (2%)
Query 16 LGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAG 75
+G++P+++ L+ A GD +S +QPGLFPDDSVPD+LVGYR P ACQIAG
Sbjct 1 MGDRPQENALNLA-----PGDNVAEPEFSSEEIQPGLFPDDSVPDDLVGYRVPIACQIAG 55
Query 76 ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 135
ITYRQLDYWARTSLVVPSIR AAGSGSQRLYSFKDILVLKIVKRLLDTGISL NIRVAVD
Sbjct 56 ITYRQLDYWARTSLVVPSIRGAAGSGSQRLYSFKDILVLKIVKRLLDTGISLQNIRVAVD 115
Query 136 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF 195
HLR+RGV+DLA ITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTG IADF
Sbjct 116 HLRKRGVRDLAKITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGTIADF 175
Query 196 HGERADGGESIAAPEDELASRRKHR-DRKIG 225
ERADGGES +PEDELASRRK+R RK G
Sbjct 176 PAERADGGESEQSPEDELASRRKNRASRKTG 206
>gi|23821222|emb|CAD52980.1| hypothetical protein [Rhodococcus fascians D188]
Length=225
Score = 325 bits (832), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 164/194 (85%), Positives = 172/194 (89%), Gaps = 1/194 (0%)
Query 33 TAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVP 92
T + ++ A S +QPGLFPDDSVPDELVGYR PSACQIAGITYRQLDYWART LVVP
Sbjct 32 TPDEASNRPVAQSQDIQPGLFPDDSVPDELVGYRVPSACQIAGITYRQLDYWARTGLVVP 91
Query 93 SIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFS 152
SIR AAGSGSQRLYSFKD+LVLKIVKRLLDTGISL NIRVAVDHLRQRGV DLANITLFS
Sbjct 92 SIRGAAGSGSQRLYSFKDMLVLKIVKRLLDTGISLQNIRVAVDHLRQRGVGDLANITLFS 151
Query 153 DGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESIAAPEDE 212
DGTTVYECTSAEEVVDLLQGGQGVFGIAV+GAMRELTG IADF ERADGGES +PEDE
Sbjct 152 DGTTVYECTSAEEVVDLLQGGQGVFGIAVNGAMRELTGTIADFPAERADGGESQPSPEDE 211
Query 213 LASRRKHR-DRKIG 225
LASRRK+R RK G
Sbjct 212 LASRRKNRASRKTG 225
>gi|229494856|ref|ZP_04388609.1| transcriptional regulator, MerR family [Rhodococcus erythropolis
SK121]
gi|229318214|gb|EEN84082.1| transcriptional regulator, MerR family [Rhodococcus erythropolis
SK121]
Length=204
Score = 324 bits (830), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 166/196 (85%), Positives = 173/196 (89%), Gaps = 2/196 (1%)
Query 31 TGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLV 90
TG AG A +S +QPGLFPDDS+PD+LVGYR PSACQIAGITYRQLDYWARTSLV
Sbjct 10 TGIAGSAAT-AEMSSEELQPGLFPDDSIPDDLVGYRVPSACQIAGITYRQLDYWARTSLV 68
Query 91 VPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITL 150
VPSIR AAGSGSQRLYSFKDILVLKIVKRLLDTGISL NIRVAVDHLR+RGV+DLANITL
Sbjct 69 VPSIRGAAGSGSQRLYSFKDILVLKIVKRLLDTGISLQNIRVAVDHLRKRGVRDLANITL 128
Query 151 FSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESIAAPE 210
FSDGTTVYECTS EEVVDLLQGGQGVFGIAVSGAMRELTG IADF ERADGGES PE
Sbjct 129 FSDGTTVYECTSPEEVVDLLQGGQGVFGIAVSGAMRELTGTIADFPAERADGGESDPNPE 188
Query 211 DELASRRKHR-DRKIG 225
DELASRRK+R RK G
Sbjct 189 DELASRRKNRASRKTG 204
>gi|111017921|ref|YP_700893.1| MerR family transcriptional regulator [Rhodococcus jostii RHA1]
gi|110817451|gb|ABG92735.1| possible transcriptional regulator, MerR family protein [Rhodococcus
jostii RHA1]
Length=206
Score = 322 bits (825), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 165/211 (79%), Positives = 180/211 (86%), Gaps = 6/211 (2%)
Query 16 LGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAG 75
+G++P+++ L+ A GD + +S +QPGLFPDDSVPD+LVGYR P ACQIAG
Sbjct 1 MGDRPQENALNLA-----PGDNVAESEFSSEEIQPGLFPDDSVPDDLVGYRVPIACQIAG 55
Query 76 ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 135
ITYRQLDYWARTSLVVPSIR AAGSGSQRLYSFKDILVLKIVKRLLDTGISL NIRVAVD
Sbjct 56 ITYRQLDYWARTSLVVPSIRGAAGSGSQRLYSFKDILVLKIVKRLLDTGISLQNIRVAVD 115
Query 136 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF 195
HLR+RGV+DLA ITLFSDGTTVYECTS EEVVDLLQGGQGVFGIAVSGAMRELTG IADF
Sbjct 116 HLRKRGVRDLAKITLFSDGTTVYECTSPEEVVDLLQGGQGVFGIAVSGAMRELTGTIADF 175
Query 196 HGERADGGESIAAPEDELASRRKHR-DRKIG 225
ERADGG S +PEDELASRRK+R RK G
Sbjct 176 PAERADGGASEQSPEDELASRRKNRASRKTG 206
>gi|343928467|ref|ZP_08767915.1| putative MerR family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
gi|343761652|dbj|GAA14841.1| putative MerR family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
Length=213
Score = 322 bits (824), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 159/178 (90%), Positives = 165/178 (93%), Gaps = 0/178 (0%)
Query 48 VQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYS 107
+ PGLFPDD+VPDELVGYR PSACQIAGITYRQLDYWARTSLVVPSIR AAGSGSQRLYS
Sbjct 36 IAPGLFPDDTVPDELVGYRVPSACQIAGITYRQLDYWARTSLVVPSIRGAAGSGSQRLYS 95
Query 108 FKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVV 167
FKDILVLKIVKRLLDTGISL NIRVAVDHLR+RGV+DLA ITLFSDGTTVYECTSAEEVV
Sbjct 96 FKDILVLKIVKRLLDTGISLQNIRVAVDHLRKRGVEDLAKITLFSDGTTVYECTSAEEVV 155
Query 168 DLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESIAAPEDELASRRKHRDRKIG 225
DLLQGGQGVFGIAVSGAMRELTG IADF GERADGG S APEDELA+RRK R R+ G
Sbjct 156 DLLQGGQGVFGIAVSGAMRELTGTIADFPGERADGGVSETAPEDELAARRKSRTRRTG 213
>gi|326384962|ref|ZP_08206636.1| regulatory protein MerR [Gordonia neofelifaecis NRRL B-59395]
gi|326196352|gb|EGD53552.1| regulatory protein MerR [Gordonia neofelifaecis NRRL B-59395]
Length=210
Score = 317 bits (811), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 164/210 (79%), Positives = 175/210 (84%), Gaps = 11/210 (5%)
Query 27 FADHTGTAGDGNDGAAAASG----PVQ-------PGLFPDDSVPDELVGYRGPSACQIAG 75
DH G+D + A+ PVQ PGLFP+D+VPDELVGYR PSACQIAG
Sbjct 1 MGDHPSDLQPGDDASTDATSVSAMPVQGGLDDIAPGLFPNDTVPDELVGYRVPSACQIAG 60
Query 76 ITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVD 135
ITYRQLDYWARTSLVVPSIR AAGSGSQRLYSFKDILVLKIVKRLLDTGISL NIRVAVD
Sbjct 61 ITYRQLDYWARTSLVVPSIRGAAGSGSQRLYSFKDILVLKIVKRLLDTGISLQNIRVAVD 120
Query 136 HLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADF 195
HLR+RGV+DLA ITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTG IADF
Sbjct 121 HLRRRGVEDLARITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGTIADF 180
Query 196 HGERADGGESIAAPEDELASRRKHRDRKIG 225
GERAD G S ++PEDELA+RRK+R R G
Sbjct 181 PGERADEGVSESSPEDELAARRKNRTRATG 210
>gi|262202675|ref|YP_003273883.1| MerR family transcriptional regulator [Gordonia bronchialis DSM
43247]
gi|262086022|gb|ACY21990.1| regulatory protein MerR [Gordonia bronchialis DSM 43247]
Length=217
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 164/206 (80%), Positives = 171/206 (84%), Gaps = 9/206 (4%)
Query 16 LGEQPRQDQLDFADHTGTAGDGN-DGAAAASGPVQ-------PGLFPDDSVPDELVGYRG 67
+G+QP D + GT DG GA A GP Q PGLFP+D+VPDELVGYR
Sbjct 1 MGDQP-VDSTSTSHGEGTPPDGGVTGARPAQGPTQGSLDDIAPGLFPNDTVPDELVGYRV 59
Query 68 PSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISL 127
PSACQIAGITYRQLDYWARTSLVVPSIR AAGSGSQRLYSFKDILVLKIVKRLLDTGISL
Sbjct 60 PSACQIAGITYRQLDYWARTSLVVPSIRGAAGSGSQRLYSFKDILVLKIVKRLLDTGISL 119
Query 128 HNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRE 187
NIRVAVDHLRQRGV+DLA ITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRE
Sbjct 120 QNIRVAVDHLRQRGVEDLARITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRE 179
Query 188 LTGVIADFHGERADGGESIAAPEDEL 213
LTG IADF GERADG S +PEDEL
Sbjct 180 LTGTIADFPGERADGAVSETSPEDEL 205
>gi|333920800|ref|YP_004494381.1| putative MerR family transcriptional regulator [Amycolicicoccus
subflavus DQS3-9A1]
gi|333483021|gb|AEF41581.1| Putative MerR family transcriptional regulator [Amycolicicoccus
subflavus DQS3-9A1]
Length=205
Score = 305 bits (780), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 155/200 (78%), Positives = 170/200 (85%), Gaps = 10/200 (5%)
Query 35 GDGNDGAAAASGPV---------QPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWA 85
G G+ A++A GPV QPGLFPDDSVPD+L GYR P ACQ+AGITYRQLDYWA
Sbjct 7 GQGSSDASSAGGPVAVEVSPGVIQPGLFPDDSVPDDLEGYRVPIACQVAGITYRQLDYWA 66
Query 86 RTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDL 145
RT LV P+IR+AAGSGSQRLYSFKDILVLKIVKRLLDTGISL NIRVAVDHLR+RGV+DL
Sbjct 67 RTGLVQPTIRNAAGSGSQRLYSFKDILVLKIVKRLLDTGISLQNIRVAVDHLRKRGVEDL 126
Query 146 ANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGES 205
ANITLFSDG TVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTG IA+F ERAD E+
Sbjct 127 ANITLFSDGATVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGKIAEFPAERADEAEA 186
Query 206 IAAPEDELASRRKHRDRKIG 225
+ DELA+RR++R RKIG
Sbjct 187 VPL-HDELATRRRNRTRKIG 205
>gi|296140039|ref|YP_003647282.1| MerR family transcriptional regulator [Tsukamurella paurometabola
DSM 20162]
gi|296028173|gb|ADG78943.1| transcriptional regulator, MerR family [Tsukamurella paurometabola
DSM 20162]
Length=205
Score = 302 bits (773), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 153/194 (79%), Positives = 164/194 (85%), Gaps = 8/194 (4%)
Query 27 FADHTGTAGDGND-------GAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAGITYR 79
D GT G G+D G + + PGLFP+D++PDEL+GYRGPSACQIAGITYR
Sbjct 1 MTDQVGT-GQGDDQPTSVLVGTQGSLDDIAPGLFPNDTIPDELLGYRGPSACQIAGITYR 59
Query 80 QLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQ 139
QLDYWARTSLVVPSIRSA GSG+QRLYSFKD+LVLKIVKRLLDTGISL NIRVAVDHLRQ
Sbjct 60 QLDYWARTSLVVPSIRSAGGSGTQRLYSFKDVLVLKIVKRLLDTGISLQNIRVAVDHLRQ 119
Query 140 RGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGER 199
RGV+DLA ITLFSDGTTVYECTSAEEVVDLLQ GQGVFGIAVSGAMRELTG IADF GER
Sbjct 120 RGVEDLAKITLFSDGTTVYECTSAEEVVDLLQHGQGVFGIAVSGAMRELTGTIADFPGER 179
Query 200 ADGGESIAAPEDEL 213
ADG + APEDEL
Sbjct 180 ADGAAAETAPEDEL 193
>gi|54024458|ref|YP_118700.1| hypothetical protein nfa24890 [Nocardia farcinica IFM 10152]
gi|54015966|dbj|BAD57336.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=185
Score = 292 bits (748), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/173 (84%), Positives = 154/173 (90%), Gaps = 2/173 (1%)
Query 48 VQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYS 107
VQPGLFP+D+VPD+LVGYR PSACQ+AGITYRQLDYWART LVVPSIR AAGSGSQRLYS
Sbjct 9 VQPGLFPNDAVPDDLVGYRVPSACQVAGITYRQLDYWARTGLVVPSIRGAAGSGSQRLYS 68
Query 108 FKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVV 167
FKDILVLKIVKRLLD GISL NIR+AVDHLR RGV+DLA ITLFSDGT+VYECTS EEVV
Sbjct 69 FKDILVLKIVKRLLDAGISLQNIRIAVDHLRSRGVEDLAGITLFSDGTSVYECTSPEEVV 128
Query 168 DLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESIAAPEDELASRRKHR 220
DLLQGGQGVFGIAVSGAMRELTGVIA+F ERA + PEDELA RRK R
Sbjct 129 DLLQGGQGVFGIAVSGAMRELTGVIANFPAERATA--ATERPEDELAYRRKAR 179
>gi|134100378|ref|YP_001106039.1| MerR family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|291007650|ref|ZP_06565623.1| MerR family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|133913001|emb|CAM03114.1| transcriptional regulator, MerR family [Saccharopolyspora erythraea
NRRL 2338]
Length=188
Score = 292 bits (747), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 150/188 (80%), Positives = 159/188 (85%), Gaps = 6/188 (3%)
Query 38 NDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSA 97
N AAA G LFPD S+PDELVGYRGP+ACQIAGITYRQLDYWART LV PSIR A
Sbjct 7 NRDAAAEQGE----LFPDASLPDELVGYRGPAACQIAGITYRQLDYWARTKLVGPSIRGA 62
Query 98 AGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTV 157
AGSGSQRLYSFKDILVLK+VKRLLDTG+SLHNIRVAVDHLR RGVQDLA ITLFSDGTTV
Sbjct 63 AGSGSQRLYSFKDILVLKVVKRLLDTGVSLHNIRVAVDHLRHRGVQDLARITLFSDGTTV 122
Query 158 YECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESIAAPEDELASRR 217
YECTSAEEVVDLLQGGQGVFGIAVSGAMRE++G I +F ERADG E + DELA RR
Sbjct 123 YECTSAEEVVDLLQGGQGVFGIAVSGAMREISGTIHEFPAERADGVEVTTSATDELARRR 182
Query 218 KHRDRKIG 225
RDR+ G
Sbjct 183 --RDRQTG 188
>gi|256379358|ref|YP_003103018.1| MerR family transcriptional regulator [Actinosynnema mirum DSM
43827]
gi|255923661|gb|ACU39172.1| transcriptional regulator, MerR family [Actinosynnema mirum DSM
43827]
Length=188
Score = 288 bits (738), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 141/172 (82%), Positives = 152/172 (89%), Gaps = 0/172 (0%)
Query 49 QPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSF 108
Q LFPD S+PDELVGYRGP+ACQIAGITYRQLDYWART LV P+IRSA GSGSQRLYSF
Sbjct 14 QGELFPDSSLPDELVGYRGPAACQIAGITYRQLDYWARTGLVNPTIRSAHGSGSQRLYSF 73
Query 109 KDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVD 168
KDILVLK+VKRLLDTG+SL NIRVAVDHLR+RGVQDLA ITLFSDGTTVYECTS EEVVD
Sbjct 74 KDILVLKVVKRLLDTGVSLQNIRVAVDHLRERGVQDLARITLFSDGTTVYECTSPEEVVD 133
Query 169 LLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESIAAPEDELASRRKHR 220
LLQGGQGVFGIAVSGAMRE++G I +F ERADG E + EDELA RR+ R
Sbjct 134 LLQGGQGVFGIAVSGAMREISGTIHEFPAERADGTEIVVVAEDELAKRRRTR 185
>gi|302527598|ref|ZP_07279940.1| transcriptional regulator [Streptomyces sp. AA4]
gi|302436493|gb|EFL08309.1| transcriptional regulator [Streptomyces sp. AA4]
Length=193
Score = 278 bits (712), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 139/180 (78%), Positives = 152/180 (85%), Gaps = 4/180 (2%)
Query 45 SGPVQPG----LFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGS 100
+GPV G LFPD S+PDELVGYRGP+ACQIAGITYRQLDYWART LV PSIR+A GS
Sbjct 11 AGPVADGEQGELFPDASLPDELVGYRGPAACQIAGITYRQLDYWARTKLVAPSIRTAHGS 70
Query 101 GSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYEC 160
GSQRLYSFKDILVLK+VKRLLDTG+SL NIRVAVDHLR RGV+DLA +TLFSDGTTVYEC
Sbjct 71 GSQRLYSFKDILVLKVVKRLLDTGVSLQNIRVAVDHLRVRGVRDLAKVTLFSDGTTVYEC 130
Query 161 TSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESIAAPEDELASRRKHR 220
TS EE+VDLLQGGQGVFGIAVSGAM+E++G I +F ERADGG A DEL RR R
Sbjct 131 TSPEEIVDLLQGGQGVFGIAVSGAMQEISGTIHEFPAERADGGLVEAVVPDELTQRRNAR 190
>gi|300786861|ref|YP_003767152.1| MerR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299796375|gb|ADJ46750.1| MerR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|340528348|gb|AEK43553.1| MerR family transcriptional regulator [Amycolatopsis mediterranei
S699]
Length=192
Score = 278 bits (711), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 140/187 (75%), Positives = 153/187 (82%), Gaps = 1/187 (0%)
Query 34 AGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPS 93
AG A+G Q LFPDDS+PDELVGYRGP+ACQIAGITYRQLDYWART LV PS
Sbjct 4 AGSEKQPVEVATGE-QGELFPDDSLPDELVGYRGPAACQIAGITYRQLDYWARTKLVAPS 62
Query 94 IRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSD 153
IR+A GSGSQRLYSFKDILVLK+VKRLLDTG+SL NIRVAVDHLR RGV+DLA +TLFSD
Sbjct 63 IRTAHGSGSQRLYSFKDILVLKVVKRLLDTGVSLQNIRVAVDHLRVRGVRDLARVTLFSD 122
Query 154 GTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESIAAPEDEL 213
GTTVYECTS EE+VDLLQGGQGVFGIAVSGAM+E++G I +F ERADGG DEL
Sbjct 123 GTTVYECTSPEEIVDLLQGGQGVFGIAVSGAMQEISGTIHEFPAERADGGIVETHQPDEL 182
Query 214 ASRRKHR 220
RR R
Sbjct 183 TQRRNAR 189
>gi|324997673|ref|ZP_08118785.1| MerR family transcriptional regulator [Pseudonocardia sp. P1]
Length=201
Score = 278 bits (710), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 141/189 (75%), Positives = 153/189 (81%), Gaps = 7/189 (3%)
Query 33 TAGDGNDGAAAASGPVQPGLFPD-------DSVPDELVGYRGPSACQIAGITYRQLDYWA 85
T GD GP Q LFPD D VPD LVG+RGP+ACQ+ GITYRQLDYWA
Sbjct 4 TEGDHAVQTPPPEGPGQGELFPDPLVGEGLDGVPDSLVGFRGPTACQVVGITYRQLDYWA 63
Query 86 RTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDL 145
RT LVVPSIR AAGSGSQRLYSFKD+LVLKIVKRLLD G+SL NIR+AV+HLR+RG++DL
Sbjct 64 RTGLVVPSIRGAAGSGSQRLYSFKDVLVLKIVKRLLDAGVSLQNIRIAVEHLRRRGIRDL 123
Query 146 ANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGES 205
A ITLFSDGTTVYECTS EEVVDLLQGGQGVFGIAVSGAMRE+TGVI DF ERADGG
Sbjct 124 AGITLFSDGTTVYECTSPEEVVDLLQGGQGVFGIAVSGAMREITGVIKDFPAERADGGTV 183
Query 206 IAAPEDELA 214
+PEDELA
Sbjct 184 DESPEDELA 192
>gi|257056258|ref|YP_003134090.1| hypothetical protein Svir_22550 [Saccharomonospora viridis DSM
43017]
gi|256586130|gb|ACU97263.1| hypothetical protein Svir_22550 [Saccharomonospora viridis DSM
43017]
Length=189
Score = 271 bits (692), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 134/183 (74%), Positives = 152/183 (84%), Gaps = 0/183 (0%)
Query 38 NDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSA 97
++G A G Q LFPD S+PDELVGYRGP+ACQIAGITYRQLDYWART LV PSIR A
Sbjct 4 DEGPVRAVGGEQGELFPDVSLPDELVGYRGPAACQIAGITYRQLDYWARTKLVAPSIRPA 63
Query 98 AGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTV 157
GSGSQRLYSFKD+LVLKIVKRLLDTG+SL NIRVAV+HLR RGV+DLA +TLFSDG TV
Sbjct 64 HGSGSQRLYSFKDLLVLKIVKRLLDTGVSLQNIRVAVEHLRARGVRDLARVTLFSDGATV 123
Query 158 YECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESIAAPEDELASRR 217
YECTS EE+VDLLQGGQGVFGIAVS AM+E++G + +F ERADG + + DEL+ RR
Sbjct 124 YECTSPEEIVDLLQGGQGVFGIAVSNAMQEISGTLHEFPAERADGVQIEPSVPDELSERR 183
Query 218 KHR 220
K R
Sbjct 184 KAR 186
>gi|331696972|ref|YP_004333211.1| regulatory protein MerR [Pseudonocardia dioxanivorans CB1190]
gi|326951661|gb|AEA25358.1| regulatory protein MerR [Pseudonocardia dioxanivorans CB1190]
Length=207
Score = 268 bits (686), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 134/181 (75%), Positives = 150/181 (83%), Gaps = 7/181 (3%)
Query 41 AAAASGPVQPGLFPD-------DSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPS 93
A+ P Q LFPD D +PD+LVG+RGP+ACQ+ GITYRQLDYWART LVVPS
Sbjct 18 ASPPDAPEQGELFPDPLVGEGLDGMPDQLVGFRGPTACQVVGITYRQLDYWARTGLVVPS 77
Query 94 IRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSD 153
IR AAGSGSQRLYSFKD+LVLK+VKRLLD G+SL NIRVAV+HLR+RG++DLA ITLFSD
Sbjct 78 IRGAAGSGSQRLYSFKDVLVLKVVKRLLDAGVSLQNIRVAVEHLRRRGIRDLAGITLFSD 137
Query 154 GTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESIAAPEDEL 213
GTTVYEC S EEVVDLLQGGQGVFGIAVSGAMRE++G I DF ERADGG APEDEL
Sbjct 138 GTTVYECASPEEVVDLLQGGQGVFGIAVSGAMREISGSIKDFPVERADGGTVDDAPEDEL 197
Query 214 A 214
+
Sbjct 198 S 198
>gi|258654132|ref|YP_003203288.1| MerR family transcriptional regulator [Nakamurella multipartita
DSM 44233]
gi|258557357|gb|ACV80299.1| transcriptional regulator, MerR family [Nakamurella multipartita
DSM 44233]
Length=180
Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/172 (73%), Positives = 143/172 (84%), Gaps = 0/172 (0%)
Query 49 QPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSF 108
Q LFP+ S+PDE +GYRGP+AC AGITYRQLDYWART LVVP++R A GSGSQRLYSF
Sbjct 6 QAALFPNTSMPDEHIGYRGPTACTAAGITYRQLDYWARTDLVVPTVRGAKGSGSQRLYSF 65
Query 109 KDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVD 168
KDILVL++VKRLLDTG+SL NIRVAV+HLR RGV DLA +TLFSDGTTVYECTS EE+VD
Sbjct 66 KDILVLRVVKRLLDTGVSLQNIRVAVEHLRARGVDDLAGVTLFSDGTTVYECTSPEEIVD 125
Query 169 LLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESIAAPEDELASRRKHR 220
LLQGGQGVFGIAV G M+E+TG +A+F ER +G + DELA RR+ R
Sbjct 126 LLQGGQGVFGIAVGGTMKEITGSLAEFPQERVEGDRVVPVERDELAERRRAR 177
>gi|319949167|ref|ZP_08023256.1| putative MerR family transcriptional regulator [Dietzia cinnamea
P4]
gi|319437153|gb|EFV92184.1| putative MerR family transcriptional regulator [Dietzia cinnamea
P4]
Length=213
Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 130/179 (73%), Positives = 143/179 (80%), Gaps = 0/179 (0%)
Query 35 GDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSI 94
GD +G A+ VQPGLFPDD +PD GYR P ACQIAGITYRQLDYWART LVVPSI
Sbjct 22 GDAVEGTQASFDEVQPGLFPDDGIPDGTSGYRVPIACQIAGITYRQLDYWARTDLVVPSI 81
Query 95 RSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDG 154
R+AAGSGSQRLYSFKDILVLKIVK+LLDTGISL NIR AVD +R RGV+DLA ITLFSDG
Sbjct 82 RNAAGSGSQRLYSFKDILVLKIVKQLLDTGISLQNIRKAVDQIRSRGVEDLATITLFSDG 141
Query 155 TTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESIAAPEDEL 213
TV+ECTS EEV DLLQGGQGVFGI + GAMREL G I++F E + +A EDEL
Sbjct 142 RTVFECTSKEEVFDLLQGGQGVFGIGIGGAMRELAGSISEFPAETVSEDDIVAPVEDEL 200
>gi|284991173|ref|YP_003409727.1| MerR family transcriptional regulator [Geodermatophilus obscurus
DSM 43160]
gi|284064418|gb|ADB75356.1| transcriptional regulator, MerR family [Geodermatophilus obscurus
DSM 43160]
Length=190
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/165 (74%), Positives = 139/165 (85%), Gaps = 1/165 (0%)
Query 56 DSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLK 115
D V +LVGYRGP+AC AGITYRQLDYWART LV PS+RSA GSG+QRLYSF+DILVLK
Sbjct 24 DEVDSDLVGYRGPTACAAAGITYRQLDYWARTGLVAPSVRSATGSGTQRLYSFRDILVLK 83
Query 116 IVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQG 175
+VKRLLDTG+SL NIR AVDHLR RG++DLAN+TLFSDG TVYECTSAEEVVDLL GGQG
Sbjct 84 VVKRLLDTGVSLQNIRKAVDHLRNRGIKDLANVTLFSDGATVYECTSAEEVVDLLAGGQG 143
Query 176 VFGIAVSGAMRELTGVIADFHGERADGGESIAAPEDELASRRKHR 220
VFGIAVSGA+REL+G +A+ ER DG + +DEL+ RR+ R
Sbjct 144 VFGIAVSGALRELSGELAELPAERIDGA-PLHTTDDELSQRRRRR 187
>gi|25028132|ref|NP_738186.1| hypothetical protein CE1576 [Corynebacterium efficiens YS-314]
gi|23493416|dbj|BAC18386.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length=207
Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/185 (72%), Positives = 144/185 (78%), Gaps = 6/185 (3%)
Query 39 DGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAA 98
D A+ PVQ LF D PDE VGYR P+ACQ+AGITYRQLDYWART LVVP+IR A
Sbjct 24 DLFASPQLPVQESLF--DVGPDEEVGYRVPTACQVAGITYRQLDYWARTKLVVPTIRGAR 81
Query 99 GSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVY 158
GSGSQRLYSFKDILVLKIVKRLLDTGISL NIR+AVD LR RGV DLA ITL SDGTTVY
Sbjct 82 GSGSQRLYSFKDILVLKIVKRLLDTGISLQNIRLAVDKLRDRGVDDLAGITLVSDGTTVY 141
Query 159 ECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGG---ESIAAPEDELAS 215
EC S EEV+DLL GGQGVFGIAV G M+ELTG I+ F ER D E+I +DELA+
Sbjct 142 ECRSNEEVIDLLGGGQGVFGIAVPGIMKELTGDISAFPSERIDDNFDAETINF-QDELAA 200
Query 216 RRKHR 220
RRK R
Sbjct 201 RRKRR 205
>gi|259507190|ref|ZP_05750090.1| MerR family transcriptional regulator [Corynebacterium efficiens
YS-314]
gi|259165230|gb|EEW49784.1| MerR family transcriptional regulator [Corynebacterium efficiens
YS-314]
Length=193
Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 133/185 (72%), Positives = 144/185 (78%), Gaps = 6/185 (3%)
Query 39 DGAAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAA 98
D A+ PVQ LF D PDE VGYR P+ACQ+AGITYRQLDYWART LVVP+IR A
Sbjct 10 DLFASPQLPVQESLF--DVGPDEEVGYRVPTACQVAGITYRQLDYWARTKLVVPTIRGAR 67
Query 99 GSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVY 158
GSGSQRLYSFKDILVLKIVKRLLDTGISL NIR+AVD LR RGV DLA ITL SDGTTVY
Sbjct 68 GSGSQRLYSFKDILVLKIVKRLLDTGISLQNIRLAVDKLRDRGVDDLAGITLVSDGTTVY 127
Query 159 ECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGG---ESIAAPEDELAS 215
EC S EEV+DLL GGQGVFGIAV G M+ELTG I+ F ER D E+I +DELA+
Sbjct 128 ECRSNEEVIDLLGGGQGVFGIAVPGIMKELTGDISAFPSERIDDNFDAETINF-QDELAA 186
Query 216 RRKHR 220
RRK R
Sbjct 187 RRKRR 191
>gi|225021499|ref|ZP_03710691.1| hypothetical protein CORMATOL_01519 [Corynebacterium matruchotii
ATCC 33806]
gi|224945881|gb|EEG27090.1| hypothetical protein CORMATOL_01519 [Corynebacterium matruchotii
ATCC 33806]
Length=182
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/176 (73%), Positives = 138/176 (79%), Gaps = 4/176 (2%)
Query 47 PVQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLY 106
P+Q LF D PDE +GYR P ACQ+AGITYRQLDYWART LV PSIR+A GSGSQRLY
Sbjct 6 PIQESLF-DMGGPDEALGYRVPIACQVAGITYRQLDYWARTKLVEPSIRTARGSGSQRLY 64
Query 107 SFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEV 166
SFKDILVLKIVKRLLDTGISL NIR AVD LR GV+DLA ITL SDGTTVYEC SAEEV
Sbjct 65 SFKDILVLKIVKRLLDTGISLQNIRQAVDKLRDLGVEDLAEITLVSDGTTVYECRSAEEV 124
Query 167 VDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESIAAPE---DELASRRKH 219
+DLL GGQGVFGIAV G M+ELTG I+ F ER D + PE DELA+RR+
Sbjct 125 IDLLGGGQGVFGIAVPGIMKELTGTISAFPSERVDQPATDTTPESEVDELAARRRK 180
>gi|296394667|ref|YP_003659551.1| MerR family transcriptional regulator [Segniliparus rotundus
DSM 44985]
gi|296181814|gb|ADG98720.1| transcriptional regulator, MerR family [Segniliparus rotundus
DSM 44985]
Length=212
Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 125/214 (59%), Positives = 154/214 (72%), Gaps = 7/214 (3%)
Query 9 RSARGSTLGEQPRQDQLDFADHTGTAGDGNDGAAAASGPVQPGLFPDDSVPDELVGYRGP 68
R GST +P ++ ++ G + GAA + P ++SV EL+GYR P
Sbjct 4 RVKPGSTKNAEPSKEDKPTSEEQGLFPLDSLGAAEQAAP-------EESVDVELLGYRAP 56
Query 69 SACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLH 128
A ++AGITYRQLDYWART +VVPS+R A GSGSQRLYSFKDILVLKIVKRLLDTG+SL
Sbjct 57 VASEVAGITYRQLDYWARTGIVVPSVRGAVGSGSQRLYSFKDILVLKIVKRLLDTGVSLQ 116
Query 129 NIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMREL 188
N+R+AVDHL QRGV++L+++TLFSDG VYECTS EEVVDLL+GGQGVFGIAV GAMREL
Sbjct 117 NVRLAVDHLHQRGVKELSDVTLFSDGVGVYECTSGEEVVDLLRGGQGVFGIAVGGAMREL 176
Query 189 TGVIADFHGERADGGESIAAPEDELASRRKHRDR 222
+G + R D + + EDEL +RRK + R
Sbjct 177 SGAVVGMQSFRVDLEDPEPSVEDELTARRKSKAR 210
>gi|341824812|gb|AEK92333.1| MerR family transcriptional regulator [Corynebacterium pseudotuberculosis
PAT10]
Length=187
Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 127/181 (71%), Positives = 140/181 (78%), Gaps = 3/181 (1%)
Query 41 AAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGS 100
A S PVQ LF D PDE VGYR P ACQ+AGITYRQLDYWART LV P+IR+A GS
Sbjct 7 TARNSTPVQEALF--DMGPDEEVGYRVPIACQVAGITYRQLDYWARTKLVEPTIRTARGS 64
Query 101 GSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYEC 160
GSQRLYSFKDILVLKIVKRLLDTGISL NIR+AVD LR RGV DLA ITL SDGTTVYEC
Sbjct 65 GSQRLYSFKDILVLKIVKRLLDTGISLQNIRLAVDKLRNRGVDDLAEITLVSDGTTVYEC 124
Query 161 TSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGER-ADGGESIAAPEDELASRRKH 219
S EEV+DLL GGQGVFGIAV G +RELTG I+ F E+ +D + DELA+RR+
Sbjct 125 RSNEEVIDLLGGGQGVFGIAVPGIVRELTGTISAFPSEKISDLMDDNVVGVDELAARRRR 184
Query 220 R 220
+
Sbjct 185 K 185
>gi|300858421|ref|YP_003783404.1| MerR family transcriptional regulator [Corynebacterium pseudotuberculosis
FRC41]
gi|300685875|gb|ADK28797.1| MerR-family transcription regulator [Corynebacterium pseudotuberculosis
FRC41]
gi|302206134|gb|ADL10476.1| MerR family transcriptional regulator [Corynebacterium pseudotuberculosis
C231]
gi|302330690|gb|ADL20884.1| MerR family transcriptional regulator [Corynebacterium pseudotuberculosis
1002]
gi|308276374|gb|ADO26273.1| MerR family transcriptional regulator [Corynebacterium pseudotuberculosis
I19]
Length=185
Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 127/181 (71%), Positives = 140/181 (78%), Gaps = 3/181 (1%)
Query 41 AAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGS 100
A S PVQ LF D PDE VGYR P ACQ+AGITYRQLDYWART LV P+IR+A GS
Sbjct 5 TARNSTPVQEALF--DMGPDEEVGYRVPIACQVAGITYRQLDYWARTKLVEPTIRTARGS 62
Query 101 GSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYEC 160
GSQRLYSFKDILVLKIVKRLLDTGISL NIR+AVD LR RGV DLA ITL SDGTTVYEC
Sbjct 63 GSQRLYSFKDILVLKIVKRLLDTGISLQNIRLAVDKLRNRGVDDLAEITLVSDGTTVYEC 122
Query 161 TSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGER-ADGGESIAAPEDELASRRKH 219
S EEV+DLL GGQGVFGIAV G +RELTG I+ F E+ +D + DELA+RR+
Sbjct 123 RSNEEVIDLLGGGQGVFGIAVPGIVRELTGTISAFPSEKISDLMDDNVVGVDELAARRRR 182
Query 220 R 220
+
Sbjct 183 K 183
>gi|317506033|ref|ZP_07963863.1| regulatory protein [Segniliparus rugosus ATCC BAA-974]
gi|316255691|gb|EFV14931.1| regulatory protein [Segniliparus rugosus ATCC BAA-974]
Length=206
Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 119/186 (64%), Positives = 143/186 (77%), Gaps = 12/186 (6%)
Query 49 QPGLFP------------DDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRS 96
+ GLFP D++V EL+GYR P A ++AGITYRQLDYWART +VVPS+R
Sbjct 19 EQGLFPLESLGAAAPASSDEAVDLELLGYRAPVASEVAGITYRQLDYWARTGIVVPSVRG 78
Query 97 AAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTT 156
A GSGSQRLYSFKDILVLKIVKRLLDTG+SL N+R+AV+HL QRGV++L+N+TLFSDG
Sbjct 79 AVGSGSQRLYSFKDILVLKIVKRLLDTGVSLQNVRLAVEHLHQRGVKELSNVTLFSDGVG 138
Query 157 VYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESIAAPEDELASR 216
VYECTS EEVVDLL+GGQGVFGIAV GAMREL+G + R D + + EDEL++R
Sbjct 139 VYECTSGEEVVDLLRGGQGVFGIAVGGAMRELSGAVIGMQSFRVDVEDPEPSVEDELSAR 198
Query 217 RKHRDR 222
RK + R
Sbjct 199 RKSKTR 204
>gi|305680782|ref|ZP_07403589.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
14266]
gi|305658987|gb|EFM48487.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
14266]
Length=183
Score = 240 bits (613), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 127/177 (72%), Positives = 138/177 (78%), Gaps = 5/177 (2%)
Query 47 PVQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGSGSQRLY 106
P+Q LF D PDE +GYR P ACQ+AGITYRQLDYWART LV PSIR+A GSGSQRLY
Sbjct 6 PIQESLF-DMGGPDEALGYRVPIACQVAGITYRQLDYWARTKLVEPSIRTARGSGSQRLY 64
Query 107 SFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEV 166
SFKDILVLKIVKRLLDTGISL NIR AVD LR GV+DLA ITL SDGTTVYEC SAEEV
Sbjct 65 SFKDILVLKIVKRLLDTGISLQNIRQAVDKLRDLGVEDLAEITLVSDGTTVYECRSAEEV 124
Query 167 VDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADGGESI-AAPE---DELASRRKH 219
+DLL GGQGVFGIAV G M+ELTG I+ F ER D + PE DELA+RR+
Sbjct 125 IDLLGGGQGVFGIAVPGIMKELTGTISAFPSERVDQPATTDTTPESEVDELAARRRK 181
>gi|337290676|ref|YP_004629697.1| MerR family transcription regulator [Corynebacterium ulcerans
BR-AD22]
gi|334696789|gb|AEG81586.1| MerR-family transcription regulator [Corynebacterium ulcerans
809]
gi|334698982|gb|AEG83778.1| MerR-family transcription regulator [Corynebacterium ulcerans
BR-AD22]
Length=185
Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 126/181 (70%), Positives = 139/181 (77%), Gaps = 3/181 (1%)
Query 41 AAAASGPVQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRSAAGS 100
A S PVQ LF D PDE VGYR P ACQ+AGITYRQLDYWART LV P+IR+A GS
Sbjct 5 TARNSTPVQEALF--DMGPDEEVGYRVPIACQVAGITYRQLDYWARTKLVEPTIRTARGS 62
Query 101 GSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYEC 160
GSQRLYSFKDILVLKIVKRLLDTGISL NIR+AVD LR RGV DLA ITL SDGTTVYEC
Sbjct 63 GSQRLYSFKDILVLKIVKRLLDTGISLQNIRLAVDKLRNRGVDDLAEITLVSDGTTVYEC 122
Query 161 TSAEEVVDLLQGGQGVFGIAVSGAMRELTGVIADFHGERADG-GESIAAPEDELASRRKH 219
S EEV+DLL GGQGVFGIAV G +RELTG I+ F E+ + + DELA+RR+
Sbjct 123 RSNEEVIDLLGGGQGVFGIAVPGIVRELTGTISAFPSEKINSFMDDNVVGVDELAARRRR 182
Query 220 R 220
+
Sbjct 183 K 183
Lambda K H
0.317 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 289298170616
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40