BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1831

Length=85
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15608968|ref|NP_216347.1|  hypothetical protein Rv1831 [Mycoba...   174    5e-42
gi|41407642|ref|NP_960478.1|  hypothetical protein MAP1544 [Mycob...  65.1    3e-09
gi|229494851|ref|ZP_04388604.1|  hypothetical protein RHOER0001_6...  46.6    0.001


>gi|15608968|ref|NP_216347.1| hypothetical protein Rv1831 [Mycobacterium tuberculosis H37Rv]
 gi|31793021|ref|NP_855514.1| hypothetical protein Mb1862 [Mycobacterium bovis AF2122/97]
 gi|121637734|ref|YP_977957.1| hypothetical protein BCG_1866 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 22 more sequence titles
 Length=85

 Score =  174 bits (440),  Expect = 5e-42, Method: Compositional matrix adjust.
 Identities = 85/85 (100%), Positives = 85/85 (100%), Gaps = 0/85 (0%)

Query  1   MRLCVCSAVDWTTHRSSAGEFCGCQLRTPKEQYLSVNLSGTRTARDYDASGKRWRPLAVL  60
           MRLCVCSAVDWTTHRSSAGEFCGCQLRTPKEQYLSVNLSGTRTARDYDASGKRWRPLAVL
Sbjct  1   MRLCVCSAVDWTTHRSSAGEFCGCQLRTPKEQYLSVNLSGTRTARDYDASGKRWRPLAVL  60

Query  61  TRRWGKAIHLTVDRVAESLRRLACR  85
           TRRWGKAIHLTVDRVAESLRRLACR
Sbjct  61  TRRWGKAIHLTVDRVAESLRRLACR  85


>gi|41407642|ref|NP_960478.1| hypothetical protein MAP1544 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395995|gb|AAS03861.1| hypothetical protein MAP_1544 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=81

 Score = 65.1 bits (157),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 44/79 (56%), Positives = 48/79 (61%), Gaps = 11/79 (13%)

Query  9   VDWTTHRSSAGEFCGCQLRTPKEQYLSVNLSGTRTARDY----DASGKRWRPLAVLTRRW  64
           V+W  HR  AGEF   Q RTPKEQ+LSVNLSGTRTAR+       +G R R     TRRW
Sbjct  8   VNWAAHRIRAGEFRDGQSRTPKEQHLSVNLSGTRTARNMMPLESGAGPRAR-----TRRW  62

Query  65  GKAIHLTVDRVAESLRRLA  83
           GKA        AESLRR A
Sbjct  63  GKAAATAS--AAESLRRPA  79


>gi|229494851|ref|ZP_04388604.1| hypothetical protein RHOER0001_6518 [Rhodococcus erythropolis 
SK121]
 gi|229318209|gb|EEN84077.1| hypothetical protein RHOER0001_6518 [Rhodococcus erythropolis 
SK121]
Length=85

 Score = 46.6 bits (109),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 30/62 (49%), Positives = 36/62 (59%), Gaps = 6/62 (9%)

Query  26  LRTPKEQYLSVNLSGTRTARDYDASGKRW-RPLAVLTRRW--GKAIHLTVDRVAESLRRL  82
           +R PKEQYL VNLSGT+     DASGKRW  P A   R W    A H    R++++L   
Sbjct  4   IRAPKEQYLPVNLSGTKDRTGSDASGKRWDNPPADGERLWLPPSADHY---RISQALGNR  60

Query  83  AC  84
           AC
Sbjct  61  AC  62



Lambda     K      H
   0.325    0.133    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131466506940


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40