BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1838c
Length=131
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608975|ref|NP_216354.1| hypothetical protein Rv1838c [Mycob... 262 1e-68
gi|289447452|ref|ZP_06437196.1| toxin [Mycobacterium tuberculosi... 261 4e-68
gi|340626846|ref|YP_004745298.1| hypothetical protein MCAN_18531... 258 2e-67
gi|340627856|ref|YP_004746308.1| hypothetical protein MCAN_28851... 90.9 6e-17
gi|225181869|ref|ZP_03735305.1| PilT protein domain protein [Det... 89.7 1e-16
gi|15610000|ref|NP_217379.1| hypothetical protein Rv2863 [Mycoba... 89.0 2e-16
gi|254168119|ref|ZP_04874966.1| hypothetical protein ABOONEI_736... 82.0 3e-14
gi|254167943|ref|ZP_04874791.1| hypothetical protein ABOONEI_90 ... 80.5 7e-14
gi|258593755|emb|CBE70096.1| conserved protein of unknown functi... 71.2 4e-11
gi|332796099|ref|YP_004457599.1| VapC-type toxin [Acidianus hosp... 55.8 2e-06
gi|14521921|ref|NP_127398.1| hypothetical protein PAB1216 [Pyroc... 55.5 3e-06
gi|227831461|ref|YP_002833241.1| twitching mobility protein PilT... 54.7 5e-06
gi|261603068|gb|ACX92671.1| PilT protein domain protein [Sulfolo... 53.5 1e-05
gi|229580387|ref|YP_002838787.1| PilT protein domain protein [Su... 53.5 1e-05
gi|256824109|ref|YP_003148069.1| nucleic acid-binding protein [K... 50.1 1e-04
gi|14521500|ref|NP_126976.1| hypothetical protein PAB0859 [Pyroc... 49.3 2e-04
gi|325968338|ref|YP_004244530.1| PilT protein domain protein [Vu... 47.0 9e-04
gi|15898541|ref|NP_343146.1| hypothetical protein SSO8813 [Sulfo... 45.8 0.002
gi|15898764|ref|NP_343369.1| hypothetical protein SSO1968 [Sulfo... 45.4 0.003
gi|254171885|ref|ZP_04878561.1| putative PIN domain protein [The... 45.1 0.004
gi|55376381|ref|YP_134234.1| hypothetical protein pNG5114 [Haloa... 44.7 0.005
gi|57640933|ref|YP_183411.1| nucleic acid-binding protein [Therm... 43.9 0.007
gi|337285329|ref|YP_004624803.1| Nucleotide binding protein [Pyr... 43.5 0.009
gi|88810685|ref|ZP_01125942.1| PIN domain protein [Nitrococcus m... 43.1 0.012
gi|240103006|ref|YP_002959315.1| Nucleotide binding protein, put... 43.1 0.015
gi|240103975|ref|YP_002960284.1| Nucleotide binding protein, put... 42.7 0.020
gi|146304073|ref|YP_001191389.1| PilT domain-containing protein ... 41.6 0.043
gi|320105317|ref|YP_004180907.1| PIN domain-containing protein f... 39.3 0.19
gi|88603396|ref|YP_503574.1| PilT protein-like protein [Methanos... 38.9 0.27
gi|149187460|ref|ZP_01865758.1| formate C-acetyltransferase [Vib... 38.5 0.33
gi|284047180|ref|YP_003397520.1| PilT protein domain protein [Co... 36.6 1.2
gi|11497685|ref|NP_068906.1| hypothetical protein AF0065 [Archae... 36.2 1.5
gi|343460054|gb|AEM38490.1| PilT protein domain protein [Pyrolob... 36.2 1.6
gi|338733837|ref|YP_004672310.1| hypothetical protein SNE_A19420... 35.4 2.7
gi|339729928|emb|CCC41225.1| conserved hypothetical protein [Hal... 35.4 3.0
gi|335438518|ref|ZP_08561261.1| hypothetical protein HLRTI_15270... 35.0 3.8
gi|168998531|ref|YP_001687799.1| hypothetical protein pHH205_000... 33.9 9.3
gi|116073603|ref|ZP_01470865.1| hypothetical protein RS9916_3417... 33.9 9.5
>gi|15608975|ref|NP_216354.1| hypothetical protein Rv1838c [Mycobacterium tuberculosis H37Rv]
gi|15841306|ref|NP_336343.1| hypothetical protein MT1886 [Mycobacterium tuberculosis CDC1551]
gi|31793028|ref|NP_855521.1| hypothetical protein Mb1869c [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=131
Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 130/131 (99%), Positives = 131/131 (100%), Gaps = 0/131 (0%)
Query 1 VILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI 60
+ILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI
Sbjct 1 MILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI 60
Query 61 QPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRG 120
QPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRG
Sbjct 61 QPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRG 120
Query 121 FDSYPGIKRLA 131
FDSYPGIKRLA
Sbjct 121 FDSYPGIKRLA 131
>gi|289447452|ref|ZP_06437196.1| toxin [Mycobacterium tuberculosis CPHL_A]
gi|289420410|gb|EFD17611.1| toxin [Mycobacterium tuberculosis CPHL_A]
Length=131
Score = 261 bits (666), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 129/131 (99%), Positives = 130/131 (99%), Gaps = 0/131 (0%)
Query 1 VILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI 60
+ILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI
Sbjct 1 MILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI 60
Query 61 QPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRG 120
QPAFDA IGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRG
Sbjct 61 QPAFDATIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRG 120
Query 121 FDSYPGIKRLA 131
FDSYPGIKRLA
Sbjct 121 FDSYPGIKRLA 131
>gi|340626846|ref|YP_004745298.1| hypothetical protein MCAN_18531 [Mycobacterium canettii CIPT
140010059]
gi|340005036|emb|CCC44185.1| conserved hypothetical [Mycobacterium canettii CIPT 140010059]
Length=131
Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 128/131 (98%), Positives = 130/131 (99%), Gaps = 0/131 (0%)
Query 1 VILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI 60
+ILVDSNIPMYLVGA HPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI
Sbjct 1 MILVDSNIPMYLVGAPHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI 60
Query 61 QPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRG 120
QPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDIT+LMSFDRG
Sbjct 61 QPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITQLMSFDRG 120
Query 121 FDSYPGIKRLA 131
FDSYPGIKRLA
Sbjct 121 FDSYPGIKRLA 131
>gi|340627856|ref|YP_004746308.1| hypothetical protein MCAN_28851 [Mycobacterium canettii CIPT
140010059]
gi|340006046|emb|CCC45216.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=126
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/123 (40%), Positives = 71/123 (58%), Gaps = 1/123 (0%)
Query 1 VILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI 60
+I VD+N+ MY VG HP ++ A+ LE +L +RLVT AEV+QE+ + YV + R +
Sbjct 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEVMQELLNAYVPVGRNSTL 60
Query 61 QPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRG 120
A ++ + E+ P+E DV HAR R+ L ARD LH+A +TR+ +FD
Sbjct 61 DSAL-TLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHT 119
Query 121 FDS 123
S
Sbjct 120 LAS 122
>gi|225181869|ref|ZP_03735305.1| PilT protein domain protein [Dethiobacter alkaliphilus AHT 1]
gi|225167453|gb|EEG76268.1| PilT protein domain protein [Dethiobacter alkaliphilus AHT 1]
Length=140
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/130 (39%), Positives = 73/130 (57%), Gaps = 3/130 (2%)
Query 2 ILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAIQ 61
+ +D+NIPMY H K +L S +G TD EV QEI +RY +I +R+
Sbjct 3 VFIDTNIPMYAASKEHHFKASCVEILRSVAAGHLNAFTDTEVFQEIMYRYFSINQRDFGL 62
Query 62 PAFDAIIGVVD-EVLPIERTDVEHARDALLR--YQTLSARDALHIAVMAHHDITRLMSFD 118
FD+ ++D VL IE D+ AR + Y LS RD +H+AVM +H I R+++ D
Sbjct 63 RVFDSFSKIMDGSVLAIEHQDMLLARKLISNPTYSALSPRDTIHLAVMLNHRIKRIITAD 122
Query 119 RGFDSYPGIK 128
RGF++ GI+
Sbjct 123 RGFENIHGIQ 132
>gi|15610000|ref|NP_217379.1| hypothetical protein Rv2863 [Mycobacterium tuberculosis H37Rv]
gi|15842406|ref|NP_337443.1| hypothetical protein MT2932 [Mycobacterium tuberculosis CDC1551]
gi|31794040|ref|NP_856533.1| hypothetical protein Mb2888 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=126
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/123 (39%), Positives = 70/123 (57%), Gaps = 1/123 (0%)
Query 1 VILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI 60
+I VD+N+ MY VG HP ++ A+ LE +L +RLVT AE +QE+ + YV + R +
Sbjct 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL 60
Query 61 QPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRG 120
A ++ + E+ P+E DV HAR R+ L ARD LH+A +TR+ +FD
Sbjct 61 DSAL-TLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHT 119
Query 121 FDS 123
S
Sbjct 120 LAS 122
>gi|254168119|ref|ZP_04874966.1| hypothetical protein ABOONEI_736 [Aciduliprofundum boonei T469]
gi|197622885|gb|EDY35453.1| hypothetical protein ABOONEI_736 [Aciduliprofundum boonei T469]
Length=141
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/129 (40%), Positives = 75/129 (59%), Gaps = 3/129 (2%)
Query 1 VILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIK-RREA 59
+I +D++I MY G HP+K + +LL+ G V + EVLQEI HRY IK +++
Sbjct 1 MIFIDTSIFMYAAGKEHPNKEPSVKLLQLIAVGEIEAVINVEVLQEIFHRYTMIKMKKKG 60
Query 60 IQPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDR 119
IQ A II +V + IE +D A D L RY +++RDA+HIA M + +I + ++DR
Sbjct 61 IQLA-KNIISLVPRIYSIEISDAIRAMDILERYD-ITSRDAIHIAFMLNRNIKEVCTYDR 118
Query 120 GFDSYPGIK 128
F IK
Sbjct 119 HFFRIEEIK 127
>gi|254167943|ref|ZP_04874791.1| hypothetical protein ABOONEI_90 [Aciduliprofundum boonei T469]
gi|289595943|ref|YP_003482639.1| PilT protein domain protein [Aciduliprofundum boonei T469]
gi|197622986|gb|EDY35553.1| hypothetical protein ABOONEI_90 [Aciduliprofundum boonei T469]
gi|289533730|gb|ADD08077.1| PilT protein domain protein [Aciduliprofundum boonei T469]
Length=141
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/129 (39%), Positives = 75/129 (59%), Gaps = 3/129 (2%)
Query 1 VILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIK-RREA 59
+I +D++I MY G HP+K + +LL+ G V + EVLQEI HRY IK +++
Sbjct 1 MIFIDTSIFMYAAGKEHPNKEPSVKLLQLIAVGEIEAVINVEVLQEIFHRYTMIKMKKKG 60
Query 60 IQPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDR 119
IQ A II +V + IE +D A D L RY +++RDA+H+A M + +I + ++DR
Sbjct 61 IQLA-KNIISLVPRIYSIEISDAIRAMDILERYD-ITSRDAIHMAFMLNRNIKEVCTYDR 118
Query 120 GFDSYPGIK 128
F IK
Sbjct 119 HFFRIEEIK 127
>gi|258593755|emb|CBE70096.1| conserved protein of unknown function [NC10 bacterium 'Dutch
sediment']
Length=143
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/130 (37%), Positives = 71/130 (55%), Gaps = 2/130 (1%)
Query 3 LVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRRE-AIQ 61
+D+NI MY G HP K +L +T+AEVLQEI +RY AI+ E +
Sbjct 4 FLDTNIFMYAAGREHPMKGPCVAILRRVALDELEALTNAEVLQEILYRYRAIEEGERGLH 63
Query 62 PAFDAIIGVVDEVLPIERTDVEHARDALLRYQTL-SARDALHIAVMAHHDITRLMSFDRG 120
A A+ V E+LP+ D++ A D + RY+ + ++RDA+H A +H + ++S D
Sbjct 64 LARLAVDQVGGEILPVTLADMQRAFDLVARYRAMITSRDAVHAATALNHGLKHIISVDSH 123
Query 121 FDSYPGIKRL 130
FD GI R+
Sbjct 124 FDVIEGIIRV 133
>gi|332796099|ref|YP_004457599.1| VapC-type toxin [Acidianus hospitalis W1]
gi|332693834|gb|AEE93301.1| VapC-type toxin [Acidianus hospitalis W1]
Length=129
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/138 (30%), Positives = 71/138 (52%), Gaps = 20/138 (14%)
Query 1 VILVDSNIPMYL-VGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREA 59
+I +D+N +YL +G + L E +RL D V+ E+ Y++ K+
Sbjct 1 MIFLDANFIIYLNLGVKEVVNFYIKVLQE------DRLALDPLVIDEVI--YISKKKYNV 52
Query 60 IQPAFDAIIGVVDEV-------LPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDIT 112
F+ I +DEV LPI + D + A++ +L+Y L DA H+A+M ++ I+
Sbjct 53 ---NFNDTISFLDEVVLPNSLILPIRKEDYDKAKEIMLQY-NLKPSDAFHVAIMLNNSIS 108
Query 113 RLMSFDRGFDSYPGIKRL 130
+++S D+ FD I+RL
Sbjct 109 KIISEDKNFDRIKEIERL 126
>gi|14521921|ref|NP_127398.1| hypothetical protein PAB1216 [Pyrococcus abyssi GE5]
gi|5459141|emb|CAB50627.1| Hypothetical protein, contains PIN domain [Pyrococcus abyssi
GE5]
Length=136
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/133 (34%), Positives = 69/133 (52%), Gaps = 7/133 (5%)
Query 2 ILVDSNIPMYL-VGASHPHKLDAQRLLESALSGGERLVTDAEVLQE---ICHRYVAIKRR 57
+ +D+NI +YL +G+ P + L G L TD VL E I R +
Sbjct 3 LFLDTNILVYLALGSVDPSYETSIDEFYRDLMKGHELYTDVLVLDEFIYILKRKYGVPYE 62
Query 58 EAIQPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSF 117
+AI + +I VV ++LPI D A+D +L+Y+ L DA H+AV+ ++ + ++S
Sbjct 63 KAITFIEETVIPVV-KILPITFLDYLTAKDVMLKYK-LKPSDAFHVAVIQNNGLQAIVSE 120
Query 118 DRGFDSYPGIKRL 130
D FD P +KRL
Sbjct 121 DEDFDRLP-LKRL 132
>gi|227831461|ref|YP_002833241.1| twitching mobility protein PilT [Sulfolobus islandicus L.S.2.15]
gi|227457909|gb|ACP36596.1| PilT protein domain protein [Sulfolobus islandicus L.S.2.15]
Length=129
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/138 (30%), Positives = 70/138 (51%), Gaps = 20/138 (14%)
Query 1 VILVDSNIPMYL-VGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREA 59
+I VD+N +YL +G + L E +RL D V+ E+ Y++ K+
Sbjct 1 MIFVDANFIIYLNLGVKEVENFYIKVLQE------DRLALDPLVIDEVI--YISKKKYNV 52
Query 60 IQPAFDAIIGVVDEV-------LPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDIT 112
F+ I +DE+ LPI + D + A++ +L+Y L DA H+AVM ++ I+
Sbjct 53 ---NFNDTISFLDEIVLPNSLILPIRKEDYDKAKEIMLQYN-LKPSDAFHVAVMLNNSIS 108
Query 113 RLMSFDRGFDSYPGIKRL 130
+++S D+ FD I R+
Sbjct 109 KIISEDKDFDRTKEIHRV 126
>gi|261603068|gb|ACX92671.1| PilT protein domain protein [Sulfolobus solfataricus 98/2]
Length=130
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/131 (33%), Positives = 68/131 (52%), Gaps = 5/131 (3%)
Query 1 VILVDSNIPMYL-VGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREA 59
+I +D+N +YL +G K + L E LS + L+ D EV+ I + +K +
Sbjct 1 MIFLDANFLIYLNLGVUEVEKFYLKLLNEDRLSI-DPLIID-EVIYIIKKKKYNVKFEDT 58
Query 60 IQPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDR 119
I D II +LPI D E A+ ++ +TL DA H+AVM ++ I +++S D
Sbjct 59 ID-FLDKIILPYTIILPINSHDYEKAKGIMIS-KTLKPSDAFHVAVMINNSIKKIVSEDS 116
Query 120 GFDSYPGIKRL 130
FD GI+R+
Sbjct 117 DFDKINGIERI 127
>gi|229580387|ref|YP_002838787.1| PilT protein domain protein [Sulfolobus islandicus Y.G.57.14]
gi|229580980|ref|YP_002839379.1| PilT protein domain protein [Sulfolobus islandicus Y.N.15.51]
gi|284999001|ref|YP_003420769.1| twitching mobility protein PilT [Sulfolobus islandicus L.D.8.5]
gi|228011103|gb|ACP46865.1| PilT protein domain protein [Sulfolobus islandicus Y.G.57.14]
gi|228011696|gb|ACP47457.1| PilT protein domain protein [Sulfolobus islandicus Y.N.15.51]
gi|284446897|gb|ADB88399.1| PilT protein domain protein [Sulfolobus islandicus L.D.8.5]
Length=129
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/138 (29%), Positives = 70/138 (51%), Gaps = 20/138 (14%)
Query 1 VILVDSNIPMYL-VGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREA 59
+I +D+N +YL +G + L E +RL D V+ E+ Y++ K+
Sbjct 1 MIFLDANFIIYLNLGVKEVENFYIKVLQE------DRLALDPLVIDEVI--YISKKKYNV 52
Query 60 IQPAFDAIIGVVDEV-------LPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDIT 112
F+ I +DE+ LPI + D + A++ +L+Y L DA H+AVM ++ I+
Sbjct 53 ---NFNDTISFLDEIVLPNSLILPIRKEDYDKAKEIMLQYN-LKPSDAFHVAVMLNNSIS 108
Query 113 RLMSFDRGFDSYPGIKRL 130
+++S D+ FD I R+
Sbjct 109 KIISEDKDFDRTKEIHRV 126
>gi|256824109|ref|YP_003148069.1| nucleic acid-binding protein [Kytococcus sedentarius DSM 20547]
gi|256687502|gb|ACV05304.1| predicted nucleic acid-binding protein, contains PIN domain [Kytococcus
sedentarius DSM 20547]
Length=137
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/132 (32%), Positives = 61/132 (47%), Gaps = 8/132 (6%)
Query 1 VILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQE-ICHRYVAIKRREA 59
+ +DS I ++ G H + ++R LE+A SGG L E QE + HR R++
Sbjct 3 AVFIDSTILLHAAGGDHAMRAPSRRWLEAAASGGMALHASVEAGQEFLFHRL-----RKS 57
Query 60 IQPAFDAIIGVVDEVLPIERTDVEHARD--ALLRYQTLSARDALHIAVMAHHDITRLMSF 117
A G++D ++ D E R AL L RDA+H A T ++S
Sbjct 58 TPEQATAQFGLIDGLITWHPFDEEVLRRSVALAATGALGGRDAMHAATALAAGFTEIVSA 117
Query 118 DRGFDSYPGIKR 129
DR FD PG+ R
Sbjct 118 DRDFDKVPGLAR 129
>gi|14521500|ref|NP_126976.1| hypothetical protein PAB0859 [Pyrococcus abyssi GE5]
gi|5458719|emb|CAB50206.1| Hypothetical protein, containing PIN domain [Pyrococcus abyssi
GE5]
Length=133
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/135 (32%), Positives = 70/135 (52%), Gaps = 12/135 (8%)
Query 2 ILVDSNIPMYL---VGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICH---RYVAIK 55
I +D++ +YL V S K+DA L L +L TD V+ E+ H + +
Sbjct 3 IFLDASFIIYLNVDVPDSLAEKIDA---LYEQLITSSKLYTDVLVIDEVIHVSRKKYKVP 59
Query 56 RREAIQPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLM 115
+ I+ D +I V EVLPI + A++ +L+Y L DA+H+AV+ ++ I ++
Sbjct 60 YSKTIEMLDDIVIPYV-EVLPIGLMEYLKAKENILKYN-LKPSDAIHLAVIENNGIQAIV 117
Query 116 SFDRGFDSYPGIKRL 130
+ D FD P IKR+
Sbjct 118 TEDEDFDRVP-IKRI 131
>gi|325968338|ref|YP_004244530.1| PilT protein domain protein [Vulcanisaeta moutnovskia 768-28]
gi|323707541|gb|ADY01028.1| PilT protein domain protein [Vulcanisaeta moutnovskia 768-28]
Length=130
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/134 (30%), Positives = 67/134 (50%), Gaps = 13/134 (9%)
Query 1 VILVDSNIPMYL-VGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICH---RYVAIKR 56
++ +D+N+ +YL VG + K + L +RL TD VL E+ H + IK
Sbjct 1 MMFLDANVLIYLNVGEENVIKF-----FKGLLMRRDRLYTDVLVLDEVIHISRKKYGIKY 55
Query 57 REAIQPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMS 116
+ I+ D ++ V +VL I + E A + L DA+H+AVM ++ + ++S
Sbjct 56 EDTIKFLDDVVLPYV-KVLNIGLKEYETAEKYI---GVLKPSDAIHVAVMLNNGVNVIVS 111
Query 117 FDRGFDSYPGIKRL 130
DR FD +KR+
Sbjct 112 EDRDFDRVNTVKRV 125
>gi|15898541|ref|NP_343146.1| hypothetical protein SSO8813 [Sulfolobus solfataricus P2]
gi|284174324|ref|ZP_06388293.1| hypothetical protein Ssol98_06657 [Sulfolobus solfataricus 98/2]
gi|13814982|gb|AAK41936.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
Length=90
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (38%), Positives = 38/66 (58%), Gaps = 1/66 (1%)
Query 65 DAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRGFDSY 124
D II +LPI D E A+ ++ +TL DA H+AVM ++ I +++S D FD
Sbjct 23 DKIILPYTIILPINSHDYEKAKGIMIS-KTLKPSDAFHVAVMINNSIKKIVSEDSDFDKI 81
Query 125 PGIKRL 130
GI+R+
Sbjct 82 NGIERI 87
>gi|15898764|ref|NP_343369.1| hypothetical protein SSO1968 [Sulfolobus solfataricus P2]
gi|284175328|ref|ZP_06389297.1| hypothetical protein Ssol98_11870 [Sulfolobus solfataricus 98/2]
gi|13815243|gb|AAK42159.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261603252|gb|ACX92855.1| PilT protein domain protein [Sulfolobus solfataricus 98/2]
Length=128
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/133 (29%), Positives = 65/133 (49%), Gaps = 10/133 (7%)
Query 1 VILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICH---RYVAIKRR 57
+I +D+N +YL K +LL E L +D V+ E+ + + +K
Sbjct 1 MIFLDANFLIYLNSGVSEVKEYYIKLL-----TYESLFSDPLVIDEVIYVSKKKYGVKYC 55
Query 58 EAIQPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSF 117
+ I+ D I+ VLPI + E A++ + +Y ++ DA HIAVM ++ I ++S
Sbjct 56 DTIE-FLDEIVLKYLTVLPITIKEYERAKEIMRKY-SVKPSDAFHIAVMLNNSINVILSE 113
Query 118 DRGFDSYPGIKRL 130
D+ D IKR+
Sbjct 114 DKELDKVAEIKRI 126
>gi|254171885|ref|ZP_04878561.1| putative PIN domain protein [Thermococcus sp. AM4]
gi|214033781|gb|EEB74607.1| putative PIN domain protein [Thermococcus sp. AM4]
Length=135
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/134 (31%), Positives = 69/134 (52%), Gaps = 10/134 (7%)
Query 2 ILVDSNIPMYLVGASHPHKLDAQRLLE--SALSGGERLVTDAEVLQEICH---RYVAIKR 56
+ +D+N+ +YL + P + A L E + L+ L TD VL E+ H R I
Sbjct 3 LFIDTNLFVYL-NSRIPEDI-ANELDEFYADLTQKHELYTDMLVLDELIHVSKRKYGIAY 60
Query 57 REAIQPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMS 116
++ I+ D ++ V VLP+ D A+ + +Y L DALH+AV+ ++ + ++S
Sbjct 61 KDTIEFIDDIVLPAV-RVLPLTFQDYLTAKGVIFQYN-LRPSDALHVAVIENNGLQAIVS 118
Query 117 FDRGFDSYPGIKRL 130
D FD P +KR+
Sbjct 119 EDEDFDVLP-LKRV 131
>gi|55376381|ref|YP_134234.1| hypothetical protein pNG5114 [Haloarcula marismortui ATCC 43049]
gi|55229106|gb|AAV44528.1| unknown [Haloarcula marismortui ATCC 43049]
Length=143
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/92 (32%), Positives = 43/92 (47%), Gaps = 1/92 (1%)
Query 41 AEVLQEICHRYVAIKRREAIQPAFDAIIGVVDEVL-PIERTDVEHARDALLRYQTLSARD 99
++VL+E+ + A DAII L ++D + R RY++LS D
Sbjct 44 SDVLEEVINYLQARAGHNVATETLDAIIESSGFSLRQSSKSDFDTGRSLFRRYESLSLTD 103
Query 100 ALHIAVMAHHDITRLMSFDRGFDSYPGIKRLA 131
A+ +A M +I L SFD GFD + RL
Sbjct 104 AIIVATMQREEIEYLYSFDDGFDDVSSLTRLT 135
>gi|57640933|ref|YP_183411.1| nucleic acid-binding protein [Thermococcus kodakarensis KOD1]
gi|57159257|dbj|BAD85187.1| predicted nucleic acid-binding protein, containing PIN domain
[Thermococcus kodakarensis KOD1]
Length=135
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/134 (33%), Positives = 68/134 (51%), Gaps = 10/134 (7%)
Query 2 ILVDSNIPMYLVGASHPHKLDAQRL--LESALSGGERLVTDAEVLQEICH---RYVAIKR 56
+L+D+N+ +YL A+ +L A+RL + L T+ VL E+ H R +
Sbjct 3 LLIDTNLFVYL-NANIDDEL-AERLDRFYAELVRENEAYTNVLVLDELIHVSKRKYGVSY 60
Query 57 REAIQPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMS 116
E I D ++ V VLPI D A++ +L+Y L DALH A + ++ + ++S
Sbjct 61 PETISFIEDVVLPAV-RVLPITFEDYLTAKEIILKYH-LRPSDALHAATIQNNGLQAIVS 118
Query 117 FDRGFDSYPGIKRL 130
D FD P IKRL
Sbjct 119 EDEDFDKLP-IKRL 131
>gi|337285329|ref|YP_004624803.1| Nucleotide binding protein [Pyrococcus yayanosii CH1]
gi|334901263|gb|AEH25531.1| Nucleotide binding protein, putative, containing PIN domain [Pyrococcus
yayanosii CH1]
Length=133
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/134 (33%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query 2 ILVDSNIPMYLVGASHPHKLDAQRL--LESALSGGERLVTDAEVLQEICH---RYVAIKR 56
+ +D++ +YL P + DA+++ L L E L TD VL E+ + + I
Sbjct 3 VFLDASFIIYL-NVDLPEE-DAEKIDALYKRLVENEELYTDPLVLDEVIYVLWKKYRIPY 60
Query 57 REAIQPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMS 116
E I D II V VLP+ + AR +L+Y L DALH+AV+ + I +++
Sbjct 61 EETIDMLDDIIIPYV-SVLPVGLMEYLKARQNILKY-GLRPSDALHLAVIENSGIQAIVT 118
Query 117 FDRGFDSYPGIKRL 130
D FD P +KR+
Sbjct 119 EDCDFDDVP-VKRI 131
>gi|88810685|ref|ZP_01125942.1| PIN domain protein [Nitrococcus mobilis Nb-231]
gi|88792315|gb|EAR23425.1| PIN domain protein [Nitrococcus mobilis Nb-231]
Length=135
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/143 (34%), Positives = 66/143 (47%), Gaps = 34/143 (23%)
Query 2 ILVDSNIPMYLVGASHPHKLDAQR--LLESALSGGERLVTDAEVLQEICHRYVAIKRREA 59
+ VD+N+ +Y V S P K DA R LLE A +G +VT +VL+E + +A+++
Sbjct 4 VFVDTNVLVYSVDPSEPSKRDASRRILLELARTG--EIVTSTQVLKEFYN--IALRK--- 56
Query 60 IQPAFDAIIGVVDEVLPIERTDVEHARD--------------ALLRYQTLSARDALHIAV 105
IG+ V ER E AR+ AL R +LS DAL I
Sbjct 57 --------IGLASNV--AERCVREFARNEVIEVSVEIILAGIALHRAYSLSFWDALIIQT 106
Query 106 MAHHDITRLMSFDRGFDS-YPGI 127
D RL+S D DS Y G+
Sbjct 107 AVTGDCDRLLSEDMQHDSRYEGL 129
>gi|240103006|ref|YP_002959315.1| Nucleotide binding protein, putative, containing PIN domain [Thermococcus
gammatolerans EJ3]
gi|239910560|gb|ACS33451.1| Nucleotide binding protein, putative, containing PIN domain [Thermococcus
gammatolerans EJ3]
Length=135
Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/134 (31%), Positives = 70/134 (53%), Gaps = 10/134 (7%)
Query 2 ILVDSNIPMYLVGASHPHKLDAQRLLE--SALSGGERLVTDAEVLQEICH---RYVAIKR 56
+ +D+N+ +YL + P + A L E + L+ L TD VL E+ H R I
Sbjct 3 LFLDTNLFVYL-NSRIPEDI-ANELDEFYADLTQKHELYTDVLVLDELIHVSKRKYGIAY 60
Query 57 REAIQPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMS 116
++ ++ D ++ V VLP+ D A+ +L+Y L DALH+AV+ ++ + ++S
Sbjct 61 KDTLEFIDDIVLPAV-RVLPLTFQDYLTAKGIILQY-GLRPSDALHVAVIENNGLQVIVS 118
Query 117 FDRGFDSYPGIKRL 130
D FD P +KR+
Sbjct 119 EDEDFDVLP-LKRV 131
>gi|240103975|ref|YP_002960284.1| Nucleotide binding protein, putative, containing PIN domain [Thermococcus
gammatolerans EJ3]
gi|239911529|gb|ACS34420.1| Nucleotide binding protein, putative, containing PIN domain [Thermococcus
gammatolerans EJ3]
Length=121
Score = 42.7 bits (99), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/129 (29%), Positives = 64/129 (50%), Gaps = 11/129 (8%)
Query 2 ILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAIQ 61
+ VD N+ Y + A+ A+ LLE SG ++T A + ++ Y+ +R++
Sbjct 3 VYVDVNVLYYFLTANEEFGERARDLLER-YSGN--VMTSALTVWQL---YILFRRQKTKL 56
Query 62 PAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRGF 121
D ++ + EV+P+ + +A R + L DA+H A M H IT ++S DR F
Sbjct 57 NITDILLDLGIEVVPLTMEILRNAE----RCKKLDFDDAIHYATMKAHGITTILSNDRDF 112
Query 122 DSYPGIKRL 130
D +KR+
Sbjct 113 DK-VDVKRI 120
>gi|146304073|ref|YP_001191389.1| PilT domain-containing protein [Metallosphaera sedula DSM 5348]
gi|145702323|gb|ABP95465.1| PilT protein domain protein [Metallosphaera sedula DSM 5348]
Length=129
Score = 41.6 bits (96), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/137 (28%), Positives = 67/137 (49%), Gaps = 18/137 (13%)
Query 1 VILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI 60
+I +D+N +YL P K R+L + G + LV D EV+ YV+ R+
Sbjct 1 MIFLDANFLVYLNLGVDPVKSFYLRILSNESMGVDPLVLD-EVI------YVS---RKKY 50
Query 61 QPAFDAIIGVVDE-------VLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITR 113
F + +DE V PI + + +++ + RY +L DA H+AVM ++ I +
Sbjct 51 GVNFGDTLRFLDELVLPYVVVFPISLREYQVSKELITRY-SLYPSDAFHVAVMLNNSIKK 109
Query 114 LMSFDRGFDSYPGIKRL 130
+++ D F+ I+R+
Sbjct 110 ILTEDSDFEKIKEIERI 126
>gi|320105317|ref|YP_004180907.1| PIN domain-containing protein family protein [Terriglobus saanensis
SP1PR4]
gi|319923838|gb|ADV80913.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=145
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/140 (26%), Positives = 65/140 (47%), Gaps = 16/140 (11%)
Query 1 VILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI 60
+IL+D+N+ +Y + PH + + +E S E ++ + ++ I +A+
Sbjct 1 MILLDANLLIYAYDEAAPHHKRSSKWIERIFSSREPVLIPVAAIMA----FLRIMTHQAL 56
Query 61 Q-PAF--DAIIGVVDEVLPIERTDVEHARDALLRY--QTLS---ARDAL----HIAVMAH 108
P F + IG+VDE + + + Y QTL+ AR +L H+A +A
Sbjct 57 PGPRFSMEEGIGIVDEWFSLSHVSIAITGNEHWNYLRQTLTDGQARSSLVTDSHLAALAI 116
Query 109 HDITRLMSFDRGFDSYPGIK 128
+ L S DR F +PG++
Sbjct 117 ENGATLCSVDRDFARFPGLR 136
>gi|88603396|ref|YP_503574.1| PilT protein-like protein [Methanospirillum hungatei JF-1]
gi|88188858|gb|ABD41855.1| PilT protein-like protein [Methanospirillum hungatei JF-1]
Length=136
Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/130 (25%), Positives = 57/130 (44%), Gaps = 6/130 (4%)
Query 4 VDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKR--REAIQ 61
+DSN +Y V + P + L + G T EI YV +K+ RE
Sbjct 4 IDSNFFIYAVASDTPEGRWCRSTLSHIMEGEFIACTSTLTWDEIV--YVLMKKINREIAL 61
Query 62 PAFDAIIGVVD-EVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRG 120
+ + + + + + ++ A + +Y + RDA+H A M+H I +++ D
Sbjct 62 ECSEYFLSLPNVHYIDVSPEILKLAHSIMTQY-AMKPRDAIHAACMSHQGINTIITEDTH 120
Query 121 FDSYPGIKRL 130
FD P +KR+
Sbjct 121 FDRIPSVKRV 130
>gi|149187460|ref|ZP_01865758.1| formate C-acetyltransferase [Vibrio shilonii AK1]
gi|148838996|gb|EDL55935.1| formate C-acetyltransferase [Vibrio shilonii AK1]
Length=763
Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 0/100 (0%)
Query 3 LVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAIQP 62
VD N P LD +L+++ + G RL+ D CH AI E+
Sbjct 142 FVDVNYPAIATARLSGMYLDYNKLIDNGIGGMRRLIGDKLDSARACHDTKAIALHESFLG 201
Query 63 AFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALH 102
FD + V+D + + ++E D ++Q DAL+
Sbjct 202 CFDIVEKVIDHHIKLCAKELEVTTDLTRKHQMNDLIDALN 241
>gi|284047180|ref|YP_003397520.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
gi|283951401|gb|ADB54145.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=141
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/136 (27%), Positives = 59/136 (44%), Gaps = 17/136 (12%)
Query 1 VILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICH--RYVAIKRRE 58
VD+N+ +Y V + RLLE A++ G T A L+E+ H R + +
Sbjct 2 TFFVDANVIVYSV-TDCVQQEACARLLE-AIAKGADGRTSASALEEVWHLERNGRLGGQT 59
Query 59 AIQPA----FDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRL 114
+ ++ V DE + T VE R L A D +H+ H I +
Sbjct 60 GVAEGAHRMLTPLVPVTDEAFALALT-VEAPR--------LGASDRIHVGTCLAHGIGTI 110
Query 115 MSFDRGFDSYPGIKRL 130
++ D+GFD G++R+
Sbjct 111 VTADKGFDHVRGLRRV 126
>gi|11497685|ref|NP_068906.1| hypothetical protein AF0065 [Archaeoglobus fulgidus DSM 4304]
gi|2650589|gb|AAB91168.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length=137
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/133 (27%), Positives = 63/133 (48%), Gaps = 7/133 (5%)
Query 2 ILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQE---ICHRYVAIKRRE 58
I +D+N +YL + D L + + LVT+ + E I +R I+ E
Sbjct 3 IFLDANYLIYLKYSESDEIFDYCVNLLRKIEKYD-LVTNMLAIDEVIWILNRKYKIELDE 61
Query 59 AIQPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFD 118
+ D ++ + V+PIE D + ++ +L Y L D+LH++ M H ++ ++S D
Sbjct 62 VFE-YLDRLLSFL-RVVPIEAEDYDLMKEFMLGYN-LKPSDSLHLSSMRRHGVSVIVSED 118
Query 119 RGFDSYPGIKRLA 131
FD +KR+
Sbjct 119 SDFDRVDWVKRVW 131
>gi|343460054|gb|AEM38490.1| PilT protein domain protein [Pyrolobus fumarii 1A]
Length=138
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/133 (31%), Positives = 57/133 (43%), Gaps = 7/133 (5%)
Query 3 LVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAIQP 62
+DSN+ +Y++ A +LE A G T V+ ++ RREA++
Sbjct 7 FIDSNVFVYVLSGDSRFAQRALAILEDAEDGVYEAYTSTLVVSQVLAHLERRGRREAMEK 66
Query 63 AF----DAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAV-MAHHDITRLMSF 117
D+ I VV+ L + AR+ L +Q L D L IA M I + S
Sbjct 67 FLEYLGDSPITVVETRLDDFTYALRLARENNLSFQKLW--DDLVIASQMVRLGIREIYSN 124
Query 118 DRGFDSYPGIKRL 130
D FD PGI RL
Sbjct 125 DTDFDRIPGITRL 137
>gi|338733837|ref|YP_004672310.1| hypothetical protein SNE_A19420 [Simkania negevensis Z]
gi|336483220|emb|CCB89819.1| putative uncharacterized protein [Simkania negevensis Z]
Length=872
Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 34/116 (30%), Positives = 52/116 (45%), Gaps = 12/116 (10%)
Query 10 MYLVGASHPHKLDAQ-RLLESALSGG------ERLVTDAEVLQEICHRYVAIKRREAIQP 62
MY G +++AQ + LE LS +RL+ +V+Q C+ Y+ KR A
Sbjct 536 MYGTGGMTLEQVEAQLKELEKDLSTSVSIRKMQRLLQRKKVIQSDCYHYIDSKREFAEYL 595
Query 63 AF-DAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIA----VMAHHDITR 113
F AI+ D + + R DVE L R ++L R + I + HD T+
Sbjct 596 HFVYAILDDTDLLTKVTRIDVEIMASLLNRLKSLIERKEMEIVDFDDITEDHDFTK 651
>gi|339729928|emb|CCC41225.1| conserved hypothetical protein [Haloquadratum walsbyi C23]
Length=143
Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/122 (32%), Positives = 50/122 (41%), Gaps = 19/122 (15%)
Query 19 HKLDAQRLLESALSGGERLVTDAEVLQEICHRYV-------AIKRREAIQPA--FDAIIG 69
H DA R +A S V D E Q Y+ +KR A PA A +
Sbjct 14 HDQDASR--HTAASAALDAVYDGEFGQPYVSDYIYDEAVTLTLKRGGAFIPARQLGAKLR 71
Query 70 VVD------EVLPIERTDVEHARDALLRY--QTLSARDALHIAVMAHHDITRLMSFDRGF 121
VD E+L + + A D RY Q LS DA +A+ HDI ++SFD F
Sbjct 72 GVDPYPKAYELLRVSAAVFQDAVDVFERYDDQALSFTDATTVALCRRHDINAVLSFDDDF 131
Query 122 DS 123
D
Sbjct 132 DG 133
>gi|335438518|ref|ZP_08561261.1| hypothetical protein HLRTI_15270 [Halorhabdus tiamatea SARL4B]
gi|334891563|gb|EGM29810.1| hypothetical protein HLRTI_15270 [Halorhabdus tiamatea SARL4B]
Length=150
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/49 (37%), Positives = 23/49 (47%), Gaps = 0/49 (0%)
Query 79 RTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRGFDSYPGI 127
+ D R Y LS DA+ +A M D+ L SFD FD+ GI
Sbjct 83 KADFNAGRSIFRTYDGLSLTDAIIVATMQRQDVEYLYSFDDDFDAVEGI 131
>gi|168998531|ref|YP_001687799.1| hypothetical protein pHH205_00070 [Halobacterium salinarum]
Length=140
Score = 33.9 bits (76), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/52 (39%), Positives = 25/52 (49%), Gaps = 0/52 (0%)
Query 79 RTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRGFDSYPGIKRL 130
+TD + RY LS DA +A M I L SFD FDS G+ R+
Sbjct 82 KTDFNSTQALFRRYSHLSFVDASIVAYMQRMGIEYLYSFDDDFDSIEGVTRI 133
>gi|116073603|ref|ZP_01470865.1| hypothetical protein RS9916_34172 [Synechococcus sp. RS9916]
gi|116068908|gb|EAU74660.1| hypothetical protein RS9916_34172 [Synechococcus sp. RS9916]
Length=144
Score = 33.9 bits (76), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/56 (43%), Positives = 31/56 (56%), Gaps = 7/56 (12%)
Query 78 ERTDVEHARDALLRYQTLSAR---DALHIAVMAHHDITRLMSFDRGFDSYPGIKRL 130
E DV H L+R LS R DA H+A +A + RL+SFDR F +PG+ L
Sbjct 90 EGWDVFHG---LMRQAELSPRLCTDA-HLAALAITNQWRLVSFDRDFQLFPGLDLL 141
Lambda K H
0.324 0.139 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131523520100
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40