BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1846c
Length=138
Score E
Sequences producing significant alignments: (Bits) Value
gi|15608983|ref|NP_216362.1| transcriptional regulatory protein ... 273 4e-72
gi|289447460|ref|ZP_06437204.1| transcriptional regulator [Mycob... 271 2e-71
gi|289443322|ref|ZP_06433066.1| transcriptional regulator [Mycob... 271 3e-71
gi|254550856|ref|ZP_05141303.1| transcriptional regulator [Mycob... 271 3e-71
gi|31793036|ref|NP_855529.1| transcriptional regulatory protein ... 270 4e-71
gi|145579335|pdb|2G9W|A Chain A, Crystal Structure Of Rv1846c, A... 261 3e-68
gi|240172024|ref|ZP_04750683.1| transcriptional regulatory prote... 243 8e-63
gi|183982726|ref|YP_001851017.1| transcriptional regulatory prot... 241 2e-62
gi|342861251|ref|ZP_08717899.1| CopY family transcriptional regu... 240 6e-62
gi|118462829|ref|YP_882055.1| CopY family transcriptional regula... 239 7e-62
gi|41407657|ref|NP_960493.1| hypothetical protein MAP1559c [Myco... 239 9e-62
gi|118618424|ref|YP_906756.1| transcriptional regulatory protein... 239 1e-61
gi|254821979|ref|ZP_05226980.1| hypothetical protein MintA_18747... 238 2e-61
gi|254775345|ref|ZP_05216861.1| hypothetical protein MaviaA2_118... 237 4e-61
gi|296164831|ref|ZP_06847389.1| CopY family transcriptional repr... 236 7e-61
gi|15828112|ref|NP_302375.1| regulator [Mycobacterium leprae TN]... 229 1e-58
gi|169629501|ref|YP_001703150.1| hypothetical protein MAB_2415c ... 213 1e-53
gi|118468895|ref|YP_887933.1| CopY family transcriptional regula... 212 1e-53
gi|333990581|ref|YP_004523195.1| transcriptional regulator [Myco... 212 1e-53
gi|108799776|ref|YP_639973.1| CopY family transcriptional regula... 197 3e-49
gi|145223943|ref|YP_001134621.1| CopY family transcriptional reg... 197 4e-49
gi|120404066|ref|YP_953895.1| CopY family transcriptional regula... 195 2e-48
gi|54024487|ref|YP_118729.1| hypothetical protein nfa25180 [Noca... 192 2e-47
gi|111024199|ref|YP_707171.1| transcriptional regulator [Rhodoco... 191 2e-47
gi|226366442|ref|YP_002784225.1| BlaI family transcriptional reg... 191 2e-47
gi|226306591|ref|YP_002766551.1| BlaI family transcriptional reg... 182 1e-44
gi|296140016|ref|YP_003647259.1| CopY family transcriptional reg... 181 3e-44
gi|343928477|ref|ZP_08767925.1| putative BlaI family transcripti... 177 3e-43
gi|262202663|ref|YP_003273871.1| penicillinase repressor [Gordon... 176 1e-42
gi|325676739|ref|ZP_08156412.1| CopY family transcriptional repr... 172 2e-41
gi|312139809|ref|YP_004007145.1| penicillinase repressor [Rhodoc... 172 2e-41
gi|333920788|ref|YP_004494369.1| transcriptional repressor, CopY... 166 8e-40
gi|326384952|ref|ZP_08206626.1| CopY family transcriptional regu... 161 3e-38
gi|296394189|ref|YP_003659073.1| CopY family transcriptional rep... 144 4e-33
gi|317507035|ref|ZP_07964800.1| penicillinase repressor [Segnili... 141 3e-32
gi|297563253|ref|YP_003682227.1| CopY family transcriptional reg... 125 2e-27
gi|72163315|ref|YP_290972.1| transcriptional regulator [Thermobi... 120 6e-26
gi|257057669|ref|YP_003135501.1| putative transcriptional regula... 113 8e-24
gi|152965609|ref|YP_001361393.1| transcriptional repressor, CopY... 110 1e-22
gi|317123389|ref|YP_004097501.1| CopY family transcriptional reg... 109 1e-22
gi|269124945|ref|YP_003298315.1| transcriptional repressor, CopY... 106 1e-21
gi|86738972|ref|YP_479372.1| CopY family transcriptional regulat... 105 2e-21
gi|345011568|ref|YP_004813922.1| CopY family transcriptional rep... 105 2e-21
gi|84495459|ref|ZP_00994578.1| transcriptional regulator-like pr... 105 3e-21
gi|336118117|ref|YP_004572885.1| putative BlaI family transcript... 103 1e-20
gi|312200659|ref|YP_004020720.1| CopY family transcriptional reg... 102 1e-20
gi|271962502|ref|YP_003336698.1| CopY family transcriptional rep... 102 3e-20
gi|302548045|ref|ZP_07300387.1| CopY family transcriptional repr... 101 4e-20
gi|331697142|ref|YP_004333381.1| CopY family transcriptional reg... 101 4e-20
gi|159036426|ref|YP_001535679.1| CopY family transcriptional reg... 100 9e-20
>gi|15608983|ref|NP_216362.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15841314|ref|NP_336351.1| hypothetical protein MT1894 [Mycobacterium tuberculosis CDC1551]
gi|148661652|ref|YP_001283175.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis
H37Ra]
62 more sequence titles
Length=138
Score = 273 bits (699), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 138/138 (100%), Positives = 138/138 (100%), Gaps = 0/138 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ
Sbjct 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA
Sbjct 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
Query 121 ELEAGHGNRPPAGAATET 138
ELEAGHGNRPPAGAATET
Sbjct 121 ELEAGHGNRPPAGAATET 138
>gi|289447460|ref|ZP_06437204.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
gi|289420418|gb|EFD17619.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
Length=138
Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/138 (99%), Positives = 137/138 (99%), Gaps = 0/138 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQR AKKNLVLQ
Sbjct 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRSAKKNLVLQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA
Sbjct 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
Query 121 ELEAGHGNRPPAGAATET 138
ELEAGHGNRPPAGAATET
Sbjct 121 ELEAGHGNRPPAGAATET 138
>gi|289443322|ref|ZP_06433066.1| transcriptional regulator [Mycobacterium tuberculosis T46]
gi|289569922|ref|ZP_06450149.1| transcriptional regulator [Mycobacterium tuberculosis T17]
gi|289750420|ref|ZP_06509798.1| transcriptional regulator [Mycobacterium tuberculosis T92]
gi|289753939|ref|ZP_06513317.1| transcriptional regulatory protein [Mycobacterium tuberculosis
EAS054]
gi|289416241|gb|EFD13481.1| transcriptional regulator [Mycobacterium tuberculosis T46]
gi|289543676|gb|EFD47324.1| transcriptional regulator [Mycobacterium tuberculosis T17]
gi|289691007|gb|EFD58436.1| transcriptional regulator [Mycobacterium tuberculosis T92]
gi|289694526|gb|EFD61955.1| transcriptional regulatory protein [Mycobacterium tuberculosis
EAS054]
Length=138
Score = 271 bits (692), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 137/138 (99%), Positives = 137/138 (99%), Gaps = 0/138 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKN VLQ
Sbjct 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNRVLQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA
Sbjct 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
Query 121 ELEAGHGNRPPAGAATET 138
ELEAGHGNRPPAGAATET
Sbjct 121 ELEAGHGNRPPAGAATET 138
>gi|254550856|ref|ZP_05141303.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
Length=138
Score = 271 bits (692), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 137/138 (99%), Positives = 137/138 (99%), Gaps = 0/138 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ
Sbjct 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAH YAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA
Sbjct 61 IRDDRAHGYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
Query 121 ELEAGHGNRPPAGAATET 138
ELEAGHGNRPPAGAATET
Sbjct 121 ELEAGHGNRPPAGAATET 138
>gi|31793036|ref|NP_855529.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
gi|121637749|ref|YP_977972.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224990233|ref|YP_002644920.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|31618627|emb|CAD94580.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121493396|emb|CAL71869.1| Possible transcriptional regulatory protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224773346|dbj|BAH26152.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|341601776|emb|CCC64450.1| possible transcriptional regulatory protein [Mycobacterium bovis
BCG str. Moreau RDJ]
Length=138
Score = 270 bits (691), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 137/138 (99%), Positives = 137/138 (99%), Gaps = 0/138 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ
Sbjct 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAHRYAPVHGRDELVAGLMVDALAQAE SGSRQAALVHFVERVGADEADALRRALA
Sbjct 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEYSGSRQAALVHFVERVGADEADALRRALA 120
Query 121 ELEAGHGNRPPAGAATET 138
ELEAGHGNRPPAGAATET
Sbjct 121 ELEAGHGNRPPAGAATET 138
>gi|145579335|pdb|2G9W|A Chain A, Crystal Structure Of Rv1846c, A Putative Transcriptional
Regulatory Protein Of Mycobacterium Tuberculosis
gi|145579336|pdb|2G9W|B Chain B, Crystal Structure Of Rv1846c, A Putative Transcriptional
Regulatory Protein Of Mycobacterium Tuberculosis
Length=138
Score = 261 bits (667), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 133/137 (98%), Positives = 133/137 (98%), Gaps = 0/137 (0%)
Query 2 AKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQI 61
AKLTRLGDLERAV DHLWSRTEPQTVRQVHEALSARRDLAYTTV VLQRLAKKNLVLQI
Sbjct 2 AKLTRLGDLERAVXDHLWSRTEPQTVRQVHEALSARRDLAYTTVXAVLQRLAKKNLVLQI 61
Query 62 RDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAE 121
RDDRAHRYAPVHGRDELVAGL VDALAQAEDSGSRQAALVHFVERVGADEADALRRALAE
Sbjct 62 RDDRAHRYAPVHGRDELVAGLXVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAE 121
Query 122 LEAGHGNRPPAGAATET 138
LEAGHGNRPPAGAATET
Sbjct 122 LEAGHGNRPPAGAATET 138
>gi|240172024|ref|ZP_04750683.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
12478]
Length=138
Score = 243 bits (619), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 126/137 (92%), Positives = 126/137 (92%), Gaps = 0/137 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLGDLERAVMDHLWS EPQTVRQVH ALSARRDLAYTTVMTVLQRLAKKNLV Q
Sbjct 1 MAKLTRLGDLERAVMDHLWSTPEPQTVRQVHAALSARRDLAYTTVMTVLQRLAKKNLVSQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA
Sbjct 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
Query 121 ELEAGHGNRPPAGAATE 137
ELEA H P AGA E
Sbjct 121 ELEAAHRIPPSAGAPAE 137
>gi|183982726|ref|YP_001851017.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183176052|gb|ACC41162.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=138
Score = 241 bits (615), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/138 (90%), Positives = 127/138 (93%), Gaps = 0/138 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLGDLERAVMDHLWS EPQTVRQVH+ALSARRDLAYTTVMTVLQRLAKKNLV Q
Sbjct 1 MAKLTRLGDLERAVMDHLWSTPEPQTVRQVHQALSARRDLAYTTVMTVLQRLAKKNLVSQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSG RQAALVHFVERVGADEADALRRALA
Sbjct 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGGRQAALVHFVERVGADEADALRRALA 120
Query 121 ELEAGHGNRPPAGAATET 138
ELEA H P AGA ++
Sbjct 121 ELEASHRIPPSAGAPVDS 138
>gi|342861251|ref|ZP_08717899.1| CopY family transcriptional regulator [Mycobacterium colombiense
CECT 3035]
gi|342131151|gb|EGT84432.1| CopY family transcriptional regulator [Mycobacterium colombiense
CECT 3035]
Length=139
Score = 240 bits (612), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 124/138 (90%), Positives = 127/138 (93%), Gaps = 1/138 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLGDLERAVMDHLWS EPQTVRQVHEALSA+RDLAYTT+MTVLQRLAKKNLV Q
Sbjct 1 MAKLTRLGDLERAVMDHLWSTPEPQTVRQVHEALSAQRDLAYTTIMTVLQRLAKKNLVSQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSG RQAALVHFVERVGADEA+ALRRALA
Sbjct 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGGRQAALVHFVERVGADEAEALRRALA 120
Query 121 ELEAGH-GNRPPAGAATE 137
ELEA N P AGAA E
Sbjct 121 ELEANQRNNSPSAGAAPE 138
>gi|118462829|ref|YP_882055.1| CopY family transcriptional regulator [Mycobacterium avium 104]
gi|118164116|gb|ABK65013.1| transcriptional repressor, CopY family protein [Mycobacterium
avium 104]
Length=139
Score = 239 bits (611), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 124/138 (90%), Positives = 127/138 (93%), Gaps = 1/138 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLGDLERAVMDHLWS EPQTVRQVHEALSA+RDLAYTT+MTVLQRLAKKNLV Q
Sbjct 1 MAKLTRLGDLERAVMDHLWSTAEPQTVRQVHEALSAQRDLAYTTIMTVLQRLAKKNLVSQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEA+ALRRALA
Sbjct 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEAEALRRALA 120
Query 121 ELEAGHGNRP-PAGAATE 137
ELEA N P AGA E
Sbjct 121 ELEANQRNNPASAGAGPE 138
>gi|41407657|ref|NP_960493.1| hypothetical protein MAP1559c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396010|gb|AAS03876.1| hypothetical protein MAP_1559c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336457607|gb|EGO36612.1| putative transcriptional regulator [Mycobacterium avium subsp.
paratuberculosis S397]
Length=139
Score = 239 bits (610), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 124/138 (90%), Positives = 127/138 (93%), Gaps = 1/138 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLGDLERAVMDHLWS EPQTVRQVHEALSA+RDLAYTT+MTVLQRLAKKNLV Q
Sbjct 1 MAKLTRLGDLERAVMDHLWSTPEPQTVRQVHEALSAQRDLAYTTIMTVLQRLAKKNLVSQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEA+ALRRALA
Sbjct 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEAEALRRALA 120
Query 121 ELEAGHGNRP-PAGAATE 137
ELEA N P AGA E
Sbjct 121 ELEANQRNNPASAGAGPE 138
>gi|118618424|ref|YP_906756.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|118570534|gb|ABL05285.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=138
Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 123/138 (90%), Positives = 126/138 (92%), Gaps = 0/138 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLGDLERAVMDHLWS EPQTVRQVH+ALSARRDLAYTTVMTVLQRLAKK LV Q
Sbjct 1 MAKLTRLGDLERAVMDHLWSTPEPQTVRQVHQALSARRDLAYTTVMTVLQRLAKKKLVSQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSG RQAALVHFVERVGADEADALRRALA
Sbjct 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGGRQAALVHFVERVGADEADALRRALA 120
Query 121 ELEAGHGNRPPAGAATET 138
ELEA H P AGA ++
Sbjct 121 ELEASHRIPPSAGAPVDS 138
>gi|254821979|ref|ZP_05226980.1| hypothetical protein MintA_18747 [Mycobacterium intracellulare
ATCC 13950]
Length=139
Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 123/138 (90%), Positives = 126/138 (92%), Gaps = 1/138 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLGDLERAVMDHLWS EPQTVRQVHEALSA+RDLAYTT+MTVLQRLAKKNLV Q
Sbjct 1 MAKLTRLGDLERAVMDHLWSAPEPQTVRQVHEALSAQRDLAYTTIMTVLQRLAKKNLVSQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSG RQAALVHFVERVGADEA+ALRRALA
Sbjct 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGGRQAALVHFVERVGADEAEALRRALA 120
Query 121 ELEAGH-GNRPPAGAATE 137
ELEA N P AGA E
Sbjct 121 ELEANQRNNSPSAGAGPE 138
>gi|254775345|ref|ZP_05216861.1| hypothetical protein MaviaA2_11836 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=139
Score = 237 bits (604), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 123/138 (90%), Positives = 126/138 (92%), Gaps = 1/138 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLGDLERAVMDHLWS EPQTVRQVHEALSA+RDLAYTT+MTVLQRLAKKNLV Q
Sbjct 1 MAKLTRLGDLERAVMDHLWSTPEPQTVRQVHEALSAQRDLAYTTIMTVLQRLAKKNLVSQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEA+ALRRALA
Sbjct 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEAEALRRALA 120
Query 121 ELEAGH-GNRPPAGAATE 137
ELEA N AGA E
Sbjct 121 ELEANQRNNSASAGAGPE 138
>gi|296164831|ref|ZP_06847389.1| CopY family transcriptional repressor [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899797|gb|EFG79245.1| CopY family transcriptional repressor [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=139
Score = 236 bits (603), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 123/138 (90%), Positives = 126/138 (92%), Gaps = 1/138 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLGDLERAVMDHLWS EPQTVRQVH+ALSARRDLAYTT+MTVLQRLAKKNLV Q
Sbjct 1 MAKLTRLGDLERAVMDHLWSTPEPQTVRQVHDALSARRDLAYTTIMTVLQRLAKKNLVSQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSG R AALVHFVERVGADEADALRRALA
Sbjct 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGGRHAALVHFVERVGADEADALRRALA 120
Query 121 ELEAGH-GNRPPAGAATE 137
ELEA H P AGA+ E
Sbjct 121 ELEATHRKTAPSAGASPE 138
>gi|15828112|ref|NP_302375.1| regulator [Mycobacterium leprae TN]
gi|221230589|ref|YP_002504005.1| putative regulator [Mycobacterium leprae Br4923]
gi|2578373|emb|CAA15449.1| hypothetical protein MLCB1788.17 [Mycobacterium leprae]
gi|13093666|emb|CAC31018.1| possible regulator [Mycobacterium leprae]
gi|219933696|emb|CAR72160.1| possible regulator [Mycobacterium leprae Br4923]
Length=142
Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/123 (96%), Positives = 119/123 (97%), Gaps = 0/123 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLGDLERAVMDHLWSR EPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLV Q
Sbjct 1 MAKLTRLGDLERAVMDHLWSRQEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVSQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IR++RAHRYAPVHGRDELVAGLMVDAL QAEDS SRQAALVHFVERVGADEADALRRALA
Sbjct 61 IRNNRAHRYAPVHGRDELVAGLMVDALDQAEDSDSRQAALVHFVERVGADEADALRRALA 120
Query 121 ELE 123
ELE
Sbjct 121 ELE 123
>gi|169629501|ref|YP_001703150.1| hypothetical protein MAB_2415c [Mycobacterium abscessus ATCC
19977]
gi|169241468|emb|CAM62496.1| Conserved hypothetical protein (penicillinase repressor?) [Mycobacterium
abscessus]
Length=132
Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/130 (85%), Positives = 118/130 (91%), Gaps = 3/130 (2%)
Query 4 LTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRD 63
+ RLG+LERAVMDHLWS EPQTVRQVHEALSARRDLAYTTVMTVLQRLAKK+LV+Q RD
Sbjct 1 MARLGELERAVMDHLWSSPEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKDLVVQHRD 60
Query 64 DRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELE 123
DRAHRYAPVHGRDELVAGLMVDALAQA +SG+R+AALVHFVERVG DEADALRRALA+LE
Sbjct 61 DRAHRYAPVHGRDELVAGLMVDALAQANNSGAREAALVHFVERVGPDEADALRRALADLE 120
Query 124 A---GHGNRP 130
A G RP
Sbjct 121 AKDPSAGGRP 130
>gi|118468895|ref|YP_887933.1| CopY family transcriptional regulator protein [Mycobacterium
smegmatis str. MC2 155]
gi|118170182|gb|ABK71078.1| transcriptional repressor, CopY family protein [Mycobacterium
smegmatis str. MC2 155]
Length=135
Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/130 (84%), Positives = 114/130 (88%), Gaps = 0/130 (0%)
Query 4 LTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRD 63
+TRLG+LER VMDHLWS EPQTVRQVHEAL+ARRDLAYTT+MTVLQRLAKKNLV+Q RD
Sbjct 1 MTRLGELEREVMDHLWSAPEPQTVRQVHEALAARRDLAYTTIMTVLQRLAKKNLVVQHRD 60
Query 64 DRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELE 123
DRAHRYAP HGRDELVAGLMVDAL QA DSGSRQAALVHFVERVG DEA ALRRAL ELE
Sbjct 61 DRAHRYAPTHGRDELVAGLMVDALDQAADSGSRQAALVHFVERVGVDEAAALRRALEELE 120
Query 124 AGHGNRPPAG 133
+ PP G
Sbjct 121 SKQRVLPPTG 130
>gi|333990581|ref|YP_004523195.1| transcriptional regulator [Mycobacterium sp. JDM601]
gi|333486549|gb|AEF35941.1| transcriptional regulatory protein [Mycobacterium sp. JDM601]
Length=138
Score = 212 bits (539), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/134 (83%), Positives = 116/134 (87%), Gaps = 0/134 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAK T LGDLERAVMDHLWS E QTVRQVHEALSA+RDLAYTTVMTVLQRLAKKNLV Q
Sbjct 1 MAKQTHLGDLERAVMDHLWSAPEAQTVRQVHEALSAQRDLAYTTVMTVLQRLAKKNLVSQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAHRY PV GRDELVAGLMV+AL QA DSG R+AALVHFVERVG DEA+ALRRAL
Sbjct 61 IRDDRAHRYTPVRGRDELVAGLMVEALDQAADSGDRRAALVHFVERVGVDEAEALRRALD 120
Query 121 ELEAGHGNRPPAGA 134
+LEA H PPAG
Sbjct 121 KLEAKHHVGPPAGG 134
>gi|108799776|ref|YP_639973.1| CopY family transcriptional regulator [Mycobacterium sp. MCS]
gi|119868886|ref|YP_938838.1| CopY family transcriptional regulator [Mycobacterium sp. KMS]
gi|126435417|ref|YP_001071108.1| CopY family transcriptional regulator [Mycobacterium sp. JLS]
gi|108770195|gb|ABG08917.1| transcriptional repressor, CopY family [Mycobacterium sp. MCS]
gi|119694975|gb|ABL92048.1| transcriptional repressor, CopY family [Mycobacterium sp. KMS]
gi|126235217|gb|ABN98617.1| transcriptional repressor, CopY family [Mycobacterium sp. JLS]
Length=138
Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/134 (86%), Positives = 119/134 (89%), Gaps = 0/134 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLG+LER VMDHLWS EPQTVRQVHEAL+ARRDLAYTT+MTVLQRLAKKNLV+Q
Sbjct 1 MAKLTRLGELEREVMDHLWSAREPQTVRQVHEALAARRDLAYTTIMTVLQRLAKKNLVVQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
RDDRAHRYAP HGRDELVAGLMVDAL QA DSGSR+AALVHFVERVGADEA ALRRALA
Sbjct 61 HRDDRAHRYAPTHGRDELVAGLMVDALDQAADSGSREAALVHFVERVGADEAAALRRALA 120
Query 121 ELEAGHGNRPPAGA 134
ELE G PAG
Sbjct 121 ELEGKQGLTKPAGG 134
>gi|145223943|ref|YP_001134621.1| CopY family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|315444275|ref|YP_004077154.1| transcriptional regulator [Mycobacterium sp. Spyr1]
gi|145216429|gb|ABP45833.1| transcriptional repressor, CopY family [Mycobacterium gilvum
PYR-GCK]
gi|315262578|gb|ADT99319.1| predicted transcriptional regulator [Mycobacterium sp. Spyr1]
Length=138
Score = 197 bits (501), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 114/133 (86%), Positives = 119/133 (90%), Gaps = 0/133 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLG+LER+VMDHLWS EPQTVRQVHEALSARRDLAYTT+MTVLQRLAKKNLV+Q
Sbjct 1 MAKLTRLGELERSVMDHLWSSGEPQTVRQVHEALSARRDLAYTTIMTVLQRLAKKNLVVQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
RDDRAHRYAP HGRDELVAGLMVDAL QA DSGSR+AALVHFVERVGA EA ALRRALA
Sbjct 61 HRDDRAHRYAPTHGRDELVAGLMVDALDQAADSGSREAALVHFVERVGAGEAAALRRALA 120
Query 121 ELEAGHGNRPPAG 133
ELE H PAG
Sbjct 121 ELEDKHPTDRPAG 133
>gi|120404066|ref|YP_953895.1| CopY family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119956884|gb|ABM13889.1| transcriptional repressor, CopY family [Mycobacterium vanbaalenii
PYR-1]
Length=138
Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/133 (85%), Positives = 119/133 (90%), Gaps = 0/133 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
MAKLTRLG+LER+VMDHLWS EPQTVRQVHEAL+A RDLAYTT+MTVLQRLAKKNLV+Q
Sbjct 1 MAKLTRLGELERSVMDHLWSAGEPQTVRQVHEALAAHRDLAYTTIMTVLQRLAKKNLVVQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
RDDRAHRYAP HGRDELVAGLMVDAL QA DSGSR+AALVHFVERVGADEA ALRRALA
Sbjct 61 HRDDRAHRYAPTHGRDELVAGLMVDALDQAADSGSREAALVHFVERVGADEAAALRRALA 120
Query 121 ELEAGHGNRPPAG 133
ELE H PAG
Sbjct 121 ELEDKHRTGGPAG 133
>gi|54024487|ref|YP_118729.1| hypothetical protein nfa25180 [Nocardia farcinica IFM 10152]
gi|54015995|dbj|BAD57365.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=119
Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/117 (83%), Positives = 103/117 (89%), Gaps = 0/117 (0%)
Query 15 MDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRDDRAHRYAPVHG 74
MD LWS EPQTVRQVHEAL+ARR+LAYTTVMTVLQRLAKKNLV+Q RDDRAHRYAPVH
Sbjct 1 MDQLWSSDEPQTVRQVHEALAARRELAYTTVMTVLQRLAKKNLVVQRRDDRAHRYAPVHT 60
Query 75 RDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELEAGHGNRPP 131
RDELVA LMVDAL QAE++GSR AALVHFVE+VG DEADALR ALA+LEA G PP
Sbjct 61 RDELVASLMVDALQQAEEAGSRAAALVHFVEQVGPDEADALREALAKLEAAEGTSPP 117
>gi|111024199|ref|YP_707171.1| transcriptional regulator [Rhodococcus jostii RHA1]
gi|110823729|gb|ABG99013.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
Length=137
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/118 (84%), Positives = 107/118 (91%), Gaps = 0/118 (0%)
Query 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRDDRA 66
LG+LERAVMDHLWS +EPQTVRQVHEAL+ARR+LAYTTVMTVLQRLAKK+LV+Q RDDRA
Sbjct 4 LGELERAVMDHLWSTSEPQTVRQVHEALAARRELAYTTVMTVLQRLAKKHLVIQQRDDRA 63
Query 67 HRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELEA 124
HRY PVH R+ELVA LMVDAL QA+ SGSR AALVHFV +VGADEADALR ALA LEA
Sbjct 64 HRYLPVHQREELVASLMVDALQQADKSGSRAAALVHFVGQVGADEADALREALAALEA 121
>gi|226366442|ref|YP_002784225.1| BlaI family transcriptional regulator [Rhodococcus opacus B4]
gi|226244932|dbj|BAH55280.1| putative BlaI family transcriptional regulator [Rhodococcus opacus
B4]
Length=137
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/118 (84%), Positives = 107/118 (91%), Gaps = 0/118 (0%)
Query 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRDDRA 66
LG+LERAVMDHLWS +EPQTVRQVHEAL+ARR+LAYTTVMTVLQRLAKK+LV+Q RDDRA
Sbjct 4 LGELERAVMDHLWSTSEPQTVRQVHEALAARRELAYTTVMTVLQRLAKKHLVIQQRDDRA 63
Query 67 HRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELEA 124
HRY PVH R+ELVA LMVDAL QA+ SGSR AALVHFV +VGADEADALR ALA LEA
Sbjct 64 HRYLPVHQREELVASLMVDALQQADKSGSRAAALVHFVGQVGADEADALREALAALEA 121
>gi|226306591|ref|YP_002766551.1| BlaI family transcriptional regulator [Rhodococcus erythropolis
PR4]
gi|229493540|ref|ZP_04387325.1| transcriptional repressor, CopY family [Rhodococcus erythropolis
SK121]
gi|226185708|dbj|BAH33812.1| putative BlaI family transcriptional regulator [Rhodococcus erythropolis
PR4]
gi|229319501|gb|EEN85337.1| transcriptional repressor, CopY family [Rhodococcus erythropolis
SK121]
Length=137
Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/117 (80%), Positives = 103/117 (89%), Gaps = 0/117 (0%)
Query 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRDDRA 66
LG+LERAVMDHLWS +EPQTVRQVHEAL+ R+LAYTTVMTVLQRLAKK+LV+Q RDDRA
Sbjct 4 LGELERAVMDHLWSTSEPQTVRQVHEALATHRELAYTTVMTVLQRLAKKHLVIQQRDDRA 63
Query 67 HRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELE 123
HRY PV+ R+ELVA LMVDALAQA +SG R AALVHFV +V ADEADALR ALA LE
Sbjct 64 HRYLPVNKREELVASLMVDALAQAPESGGRAAALVHFVGQVNADEADALREALAALE 120
>gi|296140016|ref|YP_003647259.1| CopY family transcriptional regulator [Tsukamurella paurometabola
DSM 20162]
gi|296028150|gb|ADG78920.1| transcriptional repressor, CopY family [Tsukamurella paurometabola
DSM 20162]
Length=129
Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/118 (81%), Positives = 104/118 (89%), Gaps = 2/118 (1%)
Query 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRDDRA 66
LGDLERAVMDHLW+ TEPQTVRQVHE+L+A R+LAYTTVMTVLQRLAKK LV Q+R DRA
Sbjct 4 LGDLERAVMDHLWASTEPQTVRQVHESLAADRELAYTTVMTVLQRLAKKKLVSQLRTDRA 63
Query 67 HRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELEA 124
HRYA GR+ELVA LM DALAQA+ SR+AALVHFVERVGADEA ALRRALA+LEA
Sbjct 64 HRYAATFGREELVADLMFDALAQAD--SSREAALVHFVERVGADEAQALRRALAKLEA 119
>gi|343928477|ref|ZP_08767925.1| putative BlaI family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
gi|343761662|dbj|GAA14851.1| putative BlaI family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
Length=132
Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/129 (73%), Positives = 103/129 (80%), Gaps = 0/129 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
M K+ LGDLERAVMD LW+ +EP+TVRQVH LS R LAYTTVMTVLQRLAKKNLV Q
Sbjct 1 MRKMNGLGDLERAVMDTLWAGSEPKTVRQVHAELSQDRSLAYTTVMTVLQRLAKKNLVTQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAH+Y P H R++LVA LMVDAL++A+ GSR AALV FV RVGADEA ALR AL
Sbjct 61 IRDDRAHKYVPTHPREDLVASLMVDALSEADAPGSRHAALVSFVGRVGADEAAALRHALD 120
Query 121 ELEAGHGNR 129
ELEA G R
Sbjct 121 ELEAARGTR 129
>gi|262202663|ref|YP_003273871.1| penicillinase repressor [Gordonia bronchialis DSM 43247]
gi|262086010|gb|ACY21978.1| Penicillinase repressor [Gordonia bronchialis DSM 43247]
Length=132
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/133 (70%), Positives = 104/133 (79%), Gaps = 1/133 (0%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
M ++ LGDLERAVMD LW+ + PQTVRQVH LS R LAYTTVMTVLQRLAKKNLV Q
Sbjct 1 MRRMNGLGDLERAVMDTLWTSSTPQTVRQVHATLSRDRSLAYTTVMTVLQRLAKKNLVTQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAH+Y P H R++LVA LMVDAL++A+ GSR AALV FV RVGADEA ALR AL
Sbjct 61 IRDDRAHKYVPTHPREDLVASLMVDALSEADAPGSRHAALVSFVGRVGADEAAALRHALD 120
Query 121 ELEAGHGNRPPAG 133
ELEA G P +G
Sbjct 121 ELEAARGT-PESG 132
>gi|325676739|ref|ZP_08156412.1| CopY family transcriptional repressor [Rhodococcus equi ATCC
33707]
gi|325552287|gb|EGD21976.1| CopY family transcriptional repressor [Rhodococcus equi ATCC
33707]
Length=150
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/104 (83%), Positives = 94/104 (91%), Gaps = 0/104 (0%)
Query 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRDDRA 66
LG+LERAVMDHLWS TEPQTVRQVHEAL+ RR+LAYTTVMTVLQRLAKK+LV+Q RDDRA
Sbjct 4 LGELERAVMDHLWSVTEPQTVRQVHEALATRRELAYTTVMTVLQRLAKKHLVIQQRDDRA 63
Query 67 HRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGAD 110
HRY P+HGRDELVA LMVDAL QA+ SG R AALVHFV +VGAD
Sbjct 64 HRYLPMHGRDELVASLMVDALQQADASGERAAALVHFVGQVGAD 107
>gi|312139809|ref|YP_004007145.1| penicillinase repressor [Rhodococcus equi 103S]
gi|311889148|emb|CBH48461.1| penicillinase repressor [Rhodococcus equi 103S]
Length=150
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/104 (83%), Positives = 94/104 (91%), Gaps = 0/104 (0%)
Query 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRDDRA 66
LG+LERAVMDHLWS TEPQTVRQVHEAL+ RR+LAYTTVMTVLQRLAKK+LV+Q RDDRA
Sbjct 4 LGELERAVMDHLWSVTEPQTVRQVHEALATRRELAYTTVMTVLQRLAKKHLVIQQRDDRA 63
Query 67 HRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGAD 110
HRY P+HGRDELVA LMVDAL QA+ SG R AALVHFV +VGAD
Sbjct 64 HRYLPMHGRDELVASLMVDALQQADASGERAAALVHFVGQVGAD 107
>gi|333920788|ref|YP_004494369.1| transcriptional repressor, CopY family [Amycolicicoccus subflavus
DQS3-9A1]
gi|333483009|gb|AEF41569.1| Transcriptional repressor, CopY family [Amycolicicoccus subflavus
DQS3-9A1]
Length=133
Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 89/117 (77%), Positives = 96/117 (83%), Gaps = 0/117 (0%)
Query 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRDDRA 66
LG+LERAVMDHLWS EPQTVRQVHEALS R LAYTTVMTVLQRLAKK LV Q R +RA
Sbjct 4 LGELERAVMDHLWSAPEPQTVRQVHEALSEHRTLAYTTVMTVLQRLAKKKLVAQERGERA 63
Query 67 HRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELE 123
+RY PV+ R+ELVA LMVDAL QAE+SG R AALVHFVERV EA ALR ALA L+
Sbjct 64 YRYTPVNAREELVAELMVDALKQAEESGGRAAALVHFVERVDPSEAAALRDALASLD 120
>gi|326384952|ref|ZP_08206626.1| CopY family transcriptional regulator [Gordonia neofelifaecis
NRRL B-59395]
gi|326196342|gb|EGD53542.1| CopY family transcriptional regulator [Gordonia neofelifaecis
NRRL B-59395]
Length=130
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/130 (68%), Positives = 96/130 (74%), Gaps = 3/130 (2%)
Query 1 MAKLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
M K+ LGDLERAVMD LW+ PQTVRQVH L+ R LAYTTVMTVLQRL KK LV Q
Sbjct 1 MKKMNGLGDLERAVMDTLWASATPQTVRQVHAELAKSRTLAYTTVMTVLQRLTKKGLVTQ 60
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
IRDDRAH+Y R++LVA LMVDAL+ A+ GSR AALV FV RVGADEA ALR AL
Sbjct 61 IRDDRAHQYTATSPREDLVAKLMVDALSSADAPGSRHAALVSFVGRVGADEAAALREALD 120
Query 121 ELEAGHGNRP 130
ELEA RP
Sbjct 121 ELEA---TRP 127
>gi|296394189|ref|YP_003659073.1| CopY family transcriptional repressor [Segniliparus rotundus
DSM 44985]
gi|296181336|gb|ADG98242.1| transcriptional repressor, CopY family [Segniliparus rotundus
DSM 44985]
Length=133
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/113 (66%), Positives = 88/113 (78%), Gaps = 0/113 (0%)
Query 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRDDRA 66
LG+LERAVM+ LW+ P TVRQVHE L+A RDLAYTTVMTVLQRLA+K LV+Q R+DRA
Sbjct 4 LGELERAVMEQLWASPSPLTVRQVHENLAADRDLAYTTVMTVLQRLARKRLVIQRREDRA 63
Query 67 HRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRAL 119
HRY+P R++LVA L+VDAL QA DS R AALV F+ +V EA A+R AL
Sbjct 64 HRYSPAQPREDLVAALLVDALGQAPDSSVRTAALVRFIGQVSPVEARAMREAL 116
>gi|317507035|ref|ZP_07964800.1| penicillinase repressor [Segniliparus rugosus ATCC BAA-974]
gi|316254673|gb|EFV13978.1| penicillinase repressor [Segniliparus rugosus ATCC BAA-974]
Length=133
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/113 (65%), Positives = 88/113 (78%), Gaps = 0/113 (0%)
Query 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRDDRA 66
LGDLERAVM+ LW+ P TVRQVHE L+A RDLAYTTVMTVLQRLA+K LV+Q R+DRA
Sbjct 4 LGDLERAVMERLWASATPLTVRQVHEELAADRDLAYTTVMTVLQRLARKRLVIQRREDRA 63
Query 67 HRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRAL 119
HRY+P R+++VA L+VDAL QA DS R AALV F+ +V EA A++ AL
Sbjct 64 HRYSPAQPREDMVAALLVDALGQAPDSSVRTAALVRFIGQVTPGEALAMQEAL 116
>gi|297563253|ref|YP_003682227.1| CopY family transcriptional regulator [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296847701|gb|ADH69721.1| transcriptional repressor, CopY family [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length=120
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/120 (60%), Positives = 87/120 (73%), Gaps = 4/120 (3%)
Query 4 LTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRD 63
+ RLG+LERAVMD LWSR EP TVR+V +AL A RDLA+TTVMTVL RLAKK +V + R+
Sbjct 1 MNRLGELERAVMDVLWSRNEPMTVREVGKAL-AERDLAHTTVMTVLDRLAKKKVVTRARE 59
Query 64 DRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELE 123
RA RY P R+ V+ LM DAL Q +G R AAL FV+ + ++A+ALRRALAE E
Sbjct 60 GRAWRYRPAASREAYVSELMFDALGQ---TGDRDAALAAFVQSMDGEQAEALRRALAETE 116
>gi|72163315|ref|YP_290972.1| transcriptional regulator [Thermobifida fusca YX]
gi|71917047|gb|AAZ56949.1| similar to transcriptional regulator [Thermobifida fusca YX]
Length=154
Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/123 (58%), Positives = 83/123 (68%), Gaps = 4/123 (3%)
Query 5 TRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRDD 64
TRLGDLERAVMD LW +TEP TVR+V AL A RDLA+TTVMTVL RLAKK +V + RD
Sbjct 29 TRLGDLERAVMDVLWEQTEPMTVREVGRAL-ADRDLAHTTVMTVLDRLAKKGVVRRHRDG 87
Query 65 RAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELEA 124
RA RY P R+ ++ LM+DAL Q +G R AAL FV + EA+ LRR L E
Sbjct 88 RAWRYRPAASRETYISELMLDALGQ---TGDRDAALAAFVRSMSGQEAEVLRRLLLENHG 144
Query 125 GHG 127
HG
Sbjct 145 EHG 147
>gi|257057669|ref|YP_003135501.1| putative transcriptional regulator [Saccharomonospora viridis
DSM 43017]
gi|256587541|gb|ACU98674.1| predicted transcriptional regulator [Saccharomonospora viridis
DSM 43017]
Length=127
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/127 (56%), Positives = 87/127 (69%), Gaps = 9/127 (7%)
Query 4 LTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRD 63
+ RLG+LERAVM+ LW+R EP +VR VH AL R LAYTTVMTVL RLA K LV + R+
Sbjct 3 VARLGELERAVMEVLWARDEPVSVRAVHAALG-DRGLAYTTVMTVLTRLAGKGLVRRSRE 61
Query 64 DRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELE 123
RA Y P R+ VA LM++AL E SG R +ALVHF + V +DEADALR+AL +
Sbjct 62 GRAWLYRPAAAREAYVAELMLEAL---ELSGDRGSALVHFAKSVTSDEADALRQALQQ-- 116
Query 124 AGHGNRP 130
G++P
Sbjct 117 ---GHQP 120
>gi|152965609|ref|YP_001361393.1| transcriptional repressor, CopY family [Kineococcus radiotolerans
SRS30216]
gi|151360126|gb|ABS03129.1| transcriptional repressor, CopY family [Kineococcus radiotolerans
SRS30216]
Length=131
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/98 (59%), Positives = 70/98 (72%), Gaps = 0/98 (0%)
Query 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRDDRA 66
LG+LER VMD LW+ P TVR+VHE L+ R +AYTTVMTVL RLAKK++V Q R+ RA
Sbjct 3 LGELERDVMDRLWAARSPLTVREVHEQLAEHRKIAYTTVMTVLDRLAKKHVVRQEREGRA 62
Query 67 HRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFV 104
RY P R+++VA LM+DAL RQAALVHF+
Sbjct 63 FRYTPAATREQMVAELMLDALGGVPTVDDRQAALVHFI 100
>gi|317123389|ref|YP_004097501.1| CopY family transcriptional regulator [Intrasporangium calvum
DSM 43043]
gi|315587477|gb|ADU46774.1| transcriptional repressor, CopY family [Intrasporangium calvum
DSM 43043]
Length=137
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/128 (52%), Positives = 84/128 (66%), Gaps = 5/128 (3%)
Query 5 TRLGDLERAVMDHLWSRTE--PQ--TVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQ 60
TRLGDLERAVM+HLW TE P+ TVR VH+A+ R LAYTT+MTVL R+AKK LV +
Sbjct 7 TRLGDLERAVMEHLWVSTEAHPEGLTVRDVHDAIGVTRGLAYTTLMTVLDRMAKKQLVTR 66
Query 61 IRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALA 120
RD RA RY P RDEL + + L + S R++AL+ F+++ +E D LR ALA
Sbjct 67 ERDGRAWRYLPASSRDELTSEALHHTLGELAGS-QRRSALLRFLDQSTPEELDELRAALA 125
Query 121 ELEAGHGN 128
+LE G
Sbjct 126 DLEQREGT 133
>gi|269124945|ref|YP_003298315.1| transcriptional repressor, CopY family [Thermomonospora curvata
DSM 43183]
gi|268309903|gb|ACY96277.1| transcriptional repressor, CopY family [Thermomonospora curvata
DSM 43183]
Length=133
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/133 (51%), Positives = 79/133 (60%), Gaps = 9/133 (6%)
Query 7 LGDLERAVMDHLWSRTEP----QTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIR 62
LG+LER VM+ LW+R E T R V AL+ RDLA+TTVMTVL RL KK +++ R
Sbjct 4 LGELERTVMEVLWARQEAGDGAATARDVSRALAGDRDLAHTTVMTVLDRLTKKGFLVRER 63
Query 63 DDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAEL 122
D RA RY P R+ VA LM+ AL Q +G R AAL HFV V DE LR+AL EL
Sbjct 64 DGRAWRYQPAASRESYVAELMLGALNQ---TGDRDAALTHFVRSVSQDEIAVLRQALEEL 120
Query 123 EA--GHGNRPPAG 133
A H P G
Sbjct 121 TAQEAHARVEPGG 133
>gi|86738972|ref|YP_479372.1| CopY family transcriptional regulator [Frankia sp. CcI3]
gi|86565834|gb|ABD09643.1| transcriptional repressor, CopY family [Frankia sp. CcI3]
Length=185
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/122 (52%), Positives = 81/122 (67%), Gaps = 3/122 (2%)
Query 4 LTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRD 63
+ RLGDLER+VMD LW+ + T R+V L RDLAYTTV+TVL+RL +K V + R
Sbjct 1 MARLGDLERSVMDVLWASDDWLTAREVAGRLQHERDLAYTTVLTVLERLERKGFVRRQRS 60
Query 64 DRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELE 123
RAHRYA R+ +VA M++AL A+D GS ALV FV V A+EA+ LRRAL +
Sbjct 61 ARAHRYAASDSREAVVAEAMMEALGTADDRGS---ALVRFVGSVSAEEAEILRRALEPVG 117
Query 124 AG 125
+G
Sbjct 118 SG 119
>gi|345011568|ref|YP_004813922.1| CopY family transcriptional repressor [Streptomyces violaceusniger
Tu 4113]
gi|344037917|gb|AEM83642.1| transcriptional repressor, CopY family [Streptomyces violaceusniger
Tu 4113]
Length=122
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/116 (48%), Positives = 76/116 (66%), Gaps = 3/116 (2%)
Query 4 LTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRD 63
+ RLG+LE +MD LW+ P TVR++ + ++ R +AYTTVMTV L K +L+ ++
Sbjct 1 MRRLGELEAEIMDRLWAWQRPTTVREIVDDINEHRPVAYTTVMTVASILYNKGWLLRAKE 60
Query 64 DRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRAL 119
RA Y+PV R+E A LM DAL +ED R AAL HFVE++G +E ALR+AL
Sbjct 61 GRAWMYSPVRSREEYTAALMEDALGTSED---RSAALAHFVEQMGPEEVSALRKAL 113
>gi|84495459|ref|ZP_00994578.1| transcriptional regulator-like protein [Janibacter sp. HTCC2649]
gi|84384952|gb|EAQ00832.1| transcriptional regulator-like protein [Janibacter sp. HTCC2649]
Length=131
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/126 (52%), Positives = 78/126 (62%), Gaps = 7/126 (5%)
Query 6 RLGDLERAVMDHLWS----RTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQI 61
RLGDLER VM+ LW R E +VR V EAL A R+LAYTTVMTVL RL+KK LV +
Sbjct 9 RLGDLERVVMEQLWESSERRPEGASVRDVLEALPADRNLAYTTVMTVLDRLSKKGLVTRE 68
Query 62 RDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAE 121
RD RA RY P R L A M +L A D R+A L+HF++ +E D LR AL+E
Sbjct 69 RDGRAWRYTPAGTRASLTAETMRASLGDAND---RRATLLHFLDGATPEELDDLRAALSE 125
Query 122 LEAGHG 127
+E G
Sbjct 126 VEQRRG 131
>gi|336118117|ref|YP_004572885.1| putative BlaI family transcriptional regulator [Microlunatus
phosphovorus NM-1]
gi|334685897|dbj|BAK35482.1| putative BlaI family transcriptional regulator [Microlunatus
phosphovorus NM-1]
Length=120
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/106 (58%), Positives = 73/106 (69%), Gaps = 4/106 (3%)
Query 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRDDRA 66
LGDLER VM+ LW P TVR+VH A++ R +AYTTVMTVL RLAKK L + +D RA
Sbjct 4 LGDLERRVMEELWGARRPLTVREVHTAIATERVIAYTTVMTVLDRLAKKGLADREQDGRA 63
Query 67 HRYAPVHGRDELVAGLMVDALAQAEDSGS-RQAALVHFVERVGADE 111
RYA H R++LVA +M ALA D G+ R AALV FV+RV DE
Sbjct 64 FRYAAAHTREQLVAEVMHTALA---DGGTDRSAALVAFVDRVSDDE 106
>gi|312200659|ref|YP_004020720.1| CopY family transcriptional regulator [Frankia sp. EuI1c]
gi|311231995|gb|ADP84850.1| transcriptional repressor, CopY family [Frankia sp. EuI1c]
Length=157
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/131 (51%), Positives = 81/131 (62%), Gaps = 4/131 (3%)
Query 4 LTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRD 63
+ RLGDLER+VMD LW T R+V L RDLAYTTV+TVL+RL +K V + R
Sbjct 3 MARLGDLERSVMDVLWDSVGWLTAREVAARLHHERDLAYTTVLTVLERLERKGFVQRQRA 62
Query 64 DRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELE 123
RAHRY R+ +VA M++AL A+D GS ALV FV V A+EA+ LRRALA L
Sbjct 63 ARAHRYKAADAREAVVADAMLEALGTADDRGS---ALVRFVGAVSAEEAEILRRALA-LP 118
Query 124 AGHGNRPPAGA 134
+G P A
Sbjct 119 SGVEPTEPGAA 129
>gi|271962502|ref|YP_003336698.1| CopY family transcriptional repressor [Streptosporangium roseum
DSM 43021]
gi|270505677|gb|ACZ83955.1| transcriptional repressor, CopY family [Streptosporangium roseum
DSM 43021]
Length=118
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/117 (50%), Positives = 77/117 (66%), Gaps = 4/117 (3%)
Query 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRDDRA 66
LG+LER++MD +W++ T R+V L A RDLA TTVMTVL RL +K +++ RD RA
Sbjct 4 LGELERSIMDIIWAQPSAVTAREVGR-LIADRDLAPTTVMTVLDRLTRKGFLVRTRDGRA 62
Query 67 HRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELE 123
RY P RD +A LM++AL + +G R AAL F + V +EA+ LRRAL ELE
Sbjct 63 WRYEPAESRDAYIAELMLEAL---DLTGDRSAALTRFAQAVSGNEAEILRRALTELE 116
>gi|302548045|ref|ZP_07300387.1| CopY family transcriptional repressor [Streptomyces hygroscopicus
ATCC 53653]
gi|302465663|gb|EFL28756.1| CopY family transcriptional repressor [Streptomyces himastatinicus
ATCC 53653]
Length=122
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/116 (47%), Positives = 76/116 (66%), Gaps = 3/116 (2%)
Query 4 LTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRD 63
+ RLGDLE +MD LW+ P TVR++ + ++ +R +AYTTVMTV L K + + ++
Sbjct 1 MRRLGDLEAEIMDRLWTWRRPATVREIVDDINTQRPVAYTTVMTVATILYNKGWLQRGKE 60
Query 64 DRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRAL 119
RA Y+PV R+E A LM DAL ++D R AAL HFVE++G +E ALR+AL
Sbjct 61 GRAWLYSPVRSREEYSAALMEDALGTSQD---RPAALAHFVEQMGPEEVSALRKAL 113
>gi|331697142|ref|YP_004333381.1| CopY family transcriptional regulator [Pseudonocardia dioxanivorans
CB1190]
gi|326951831|gb|AEA25528.1| transcriptional repressor, CopY family [Pseudonocardia dioxanivorans
CB1190]
Length=113
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/113 (55%), Positives = 75/113 (67%), Gaps = 4/113 (3%)
Query 4 LTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVLQIRD 63
+ LG+LERAVM+ LW+ + PQT R+V EAL A RDLA TTV+TVL RL +K LV + RD
Sbjct 1 MPSLGELERAVMEVLWAASGPQTAREVQEAL-AERDLATTTVLTVLGRLERKQLVTRTRD 59
Query 64 DRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALR 116
RAH Y PV R++ VA LM DAL A D G AAL F+ + DE ALR
Sbjct 60 GRAHHYQPVASREDHVAELMRDALDAAPDRG---AALARFLGSIPPDERAALR 109
>gi|159036426|ref|YP_001535679.1| CopY family transcriptional regulator [Salinispora arenicola
CNS-205]
gi|157915261|gb|ABV96688.1| transcriptional repressor, CopY family [Salinispora arenicola
CNS-205]
Length=159
Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/134 (52%), Positives = 85/134 (64%), Gaps = 11/134 (8%)
Query 4 LTRLGDLERAVMDHLW----SRTEPQTVRQVHEALSARRDLAYTTVMTVLQRLAKKNLVL 59
+TRLGDLERAVMD LW +E TVR+V +AL A R+LAYTTV+TVL RLA K++V
Sbjct 1 MTRLGDLERAVMDVLWDTPSGTSEGVTVREVVDAL-AGRELAYTTVLTVLDRLAGKSMVR 59
Query 60 QIRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRAL 119
+ R+ RA RY R+ +A LM+DAL + GSR AALV F V EA+ LR
Sbjct 60 REREGRAWRYRAAASREAHIAQLMLDAL---DLGGSRDAALVRFARSVTGTEAEVLR--- 113
Query 120 AELEAGHGNRPPAG 133
A L A + PPAG
Sbjct 114 AALSATSESVPPAG 127
Lambda K H
0.319 0.130 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127792337190
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40