BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1853
Length=208
Score E
Sequences producing significant alignments: (Bits) Value
gi|148823064|ref|YP_001287818.1| urease accessory protein ureD [... 407 5e-112
gi|15841321|ref|NP_336358.1| hypothetical protein MT1901 [Mycoba... 405 1e-111
gi|15608990|ref|NP_216369.1| urease accessory protein ureD [Myco... 405 2e-111
gi|340626861|ref|YP_004745313.1| putative urease accessory prote... 402 2e-110
gi|289762002|ref|ZP_06521380.1| urease accessory protein ureD [M... 320 6e-86
gi|296164843|ref|ZP_06847401.1| urease accessory protein UreD [M... 317 5e-85
gi|289443329|ref|ZP_06433073.1| urease accessory protein ureD [M... 300 1e-79
gi|183982733|ref|YP_001851024.1| urease accessory protein UreD [... 298 3e-79
gi|118618417|ref|YP_906749.1| urease accessory protein UreD [Myc... 296 9e-79
gi|240172036|ref|ZP_04750695.1| urease accessory protein ureD [M... 291 4e-77
gi|118469519|ref|YP_887925.1| hypothetical protein MSMEG_3622 [M... 244 6e-63
gi|120404058|ref|YP_953887.1| putative urease accessory protein ... 238 4e-61
gi|145223935|ref|YP_001134613.1| putative urease accessory prote... 232 3e-59
gi|108799768|ref|YP_639965.1| putative urease accessory protein ... 228 3e-58
gi|169629514|ref|YP_001703163.1| putative urease accessory prote... 210 8e-53
gi|111022648|ref|YP_705620.1| urease accessory protein UreD [Rho... 163 2e-38
gi|54024510|ref|YP_118752.1| putative urease accessory protein [... 159 2e-37
gi|226365152|ref|YP_002782935.1| urease accessory protein UreD [... 157 1e-36
gi|333919744|ref|YP_004493325.1| putative urease accessory prote... 146 2e-33
gi|296393819|ref|YP_003658703.1| urease accessory protein UreD [... 140 8e-32
gi|262202655|ref|YP_003273863.1| hypothetical protein Gbro_2752 ... 127 1e-27
gi|317508612|ref|ZP_07966271.1| urease accessory protein [Segnil... 126 2e-27
gi|284988817|ref|YP_003407371.1| putative urease accessory prote... 114 7e-24
gi|343928484|ref|ZP_08767932.1| urease accessory protein UreD [G... 102 3e-20
gi|269127416|ref|YP_003300786.1| Urease accessory protein UreD [... 102 4e-20
gi|134097249|ref|YP_001102910.1| putative urease accessory prote... 92.0 5e-17
gi|302530513|ref|ZP_07282855.1| predicted protein [Streptomyces ... 88.6 5e-16
gi|336177224|ref|YP_004582599.1| Urease accessory protein ureD [... 88.2 7e-16
gi|340531933|gb|AEK47138.1| urease accessory protein UreD [Amyco... 86.3 3e-15
gi|300790252|ref|YP_003770543.1| urease accessory protein UreD [... 85.9 3e-15
gi|111220895|ref|YP_711689.1| putative urease accessory protein ... 80.9 1e-13
gi|205830842|sp|Q0RQS5.2|URED_FRAAA RecName: Full=Urease accesso... 80.9 1e-13
gi|337764364|emb|CCB73073.1| Urease accessory protein ureD [Stre... 80.1 2e-13
gi|256395573|ref|YP_003117137.1| urease accessory protein [Caten... 79.0 4e-13
gi|158317450|ref|YP_001509958.1| putative urease accessory prote... 77.0 2e-12
gi|256374655|ref|YP_003098315.1| urease accessory protein UreD [... 76.6 2e-12
gi|318062798|ref|ZP_07981519.1| urease accessory protein [Strept... 74.7 7e-12
gi|288920427|ref|ZP_06414736.1| Urease accessory protein UreD [F... 73.9 1e-11
gi|333028578|ref|ZP_08456642.1| putative urease accessory protei... 71.2 8e-11
gi|312199703|ref|YP_004019764.1| urease accessory protein UreD [... 70.9 1e-10
gi|205830725|sp|A4FCP0.2|URED2_SACEN RecName: Full=Urease access... 69.7 2e-10
gi|86739543|ref|YP_479943.1| putative urease accessory protein [... 68.9 4e-10
gi|291010056|ref|ZP_06568029.1| urease accessory protein [Saccha... 67.8 1e-09
gi|238059611|ref|ZP_04604320.1| urease accessory protein ureD 3 ... 67.4 1e-09
gi|297162285|gb|ADI11997.1| urease accessory protein [Streptomyc... 66.2 3e-09
gi|302540385|ref|ZP_07292727.1| putative urease accessory protei... 65.5 5e-09
gi|134099079|ref|YP_001104740.1| urease accessory protein [Sacch... 65.5 5e-09
gi|290962156|ref|YP_003493338.1| urease accessory protein [Strep... 65.5 5e-09
gi|345011142|ref|YP_004813496.1| Urease accessory protein ureD [... 65.1 6e-09
gi|331700223|ref|YP_004336462.1| urease accessory protein ureD [... 65.1 6e-09
>gi|148823064|ref|YP_001287818.1| urease accessory protein ureD [Mycobacterium tuberculosis F11]
gi|253799103|ref|YP_003032104.1| urease accessory protein ureD [Mycobacterium tuberculosis KZN
1435]
gi|254364675|ref|ZP_04980721.1| urease accessory protein ureD [Mycobacterium tuberculosis str.
Haarlem]
33 more sequence titles
Length=214
Score = 407 bits (1046), Expect = 5e-112, Method: Compositional matrix adjust.
Identities = 208/208 (100%), Positives = 208/208 (100%), Gaps = 0/208 (0%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA
Sbjct 7 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 66
Query 61 ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 120
ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV
Sbjct 67 ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 126
Query 121 QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT 180
QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT
Sbjct 127 QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT 186
Query 181 DAIDARSTVLALAGGGTLSTWQADRLPG 208
DAIDARSTVLALAGGGTLSTWQADRLPG
Sbjct 187 DAIDARSTVLALAGGGTLSTWQADRLPG 214
>gi|15841321|ref|NP_336358.1| hypothetical protein MT1901 [Mycobacterium tuberculosis CDC1551]
gi|13881552|gb|AAK46172.1| hypothetical protein MT1901 [Mycobacterium tuberculosis CDC1551]
Length=226
Score = 405 bits (1042), Expect = 1e-111, Method: Compositional matrix adjust.
Identities = 208/208 (100%), Positives = 208/208 (100%), Gaps = 0/208 (0%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA
Sbjct 19 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 78
Query 61 ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 120
ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV
Sbjct 79 ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 138
Query 121 QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT 180
QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT
Sbjct 139 QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT 198
Query 181 DAIDARSTVLALAGGGTLSTWQADRLPG 208
DAIDARSTVLALAGGGTLSTWQADRLPG
Sbjct 199 DAIDARSTVLALAGGGTLSTWQADRLPG 226
>gi|15608990|ref|NP_216369.1| urease accessory protein ureD [Mycobacterium tuberculosis H37Rv]
gi|31793043|ref|NP_855536.1| urease accessory protein ureD [Mycobacterium bovis AF2122/97]
gi|121637756|ref|YP_977979.1| putative urease accessory protein ureD [Mycobacterium bovis BCG
str. Pasteur 1173P2]
36 more sequence titles
Length=208
Score = 405 bits (1040), Expect = 2e-111, Method: Compositional matrix adjust.
Identities = 207/208 (99%), Positives = 208/208 (100%), Gaps = 0/208 (0%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
+VASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA
Sbjct 1 MVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
Query 61 ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 120
ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV
Sbjct 61 ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 120
Query 121 QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT 180
QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT
Sbjct 121 QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT 180
Query 181 DAIDARSTVLALAGGGTLSTWQADRLPG 208
DAIDARSTVLALAGGGTLSTWQADRLPG
Sbjct 181 DAIDARSTVLALAGGGTLSTWQADRLPG 208
>gi|340626861|ref|YP_004745313.1| putative urease accessory protein ureD [Mycobacterium canettii
CIPT 140010059]
gi|340005051|emb|CCC44200.1| putative urease accessory protein ureD [Mycobacterium canettii
CIPT 140010059]
Length=208
Score = 402 bits (1032), Expect = 2e-110, Method: Compositional matrix adjust.
Identities = 206/208 (99%), Positives = 207/208 (99%), Gaps = 0/208 (0%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
+VASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA
Sbjct 1 MVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
Query 61 ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 120
ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV
Sbjct 61 ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 120
Query 121 QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT 180
QIGRCNER GFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT
Sbjct 121 QIGRCNERGGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT 180
Query 181 DAIDARSTVLALAGGGTLSTWQADRLPG 208
DAIDARSTVLALAGGGTLSTWQADRLPG
Sbjct 181 DAIDARSTVLALAGGGTLSTWQADRLPG 208
>gi|289762002|ref|ZP_06521380.1| urease accessory protein ureD [Mycobacterium tuberculosis GM
1503]
gi|289709508|gb|EFD73524.1| urease accessory protein ureD [Mycobacterium tuberculosis GM
1503]
Length=199
Score = 320 bits (821), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 177/197 (90%), Positives = 177/197 (90%), Gaps = 3/197 (1%)
Query 15 GGVQARRTAPDT-VHLVSAAATPLG-GDTMRIRVIVERG-AQLRLRSAAATVALPGVDTL 71
GGVQARR T VSAA P G GDTMR G AQLRLRSAAATVALPGVDTL
Sbjct 3 GGVQARRNRARTRCTWVSAARDPAGAGDTMRNPGDRGNGGAQLRLRSAAATVALPGVDTL 62
Query 72 TSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGF 131
TSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGF
Sbjct 63 TSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGF 122
Query 132 WSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFTDAIDARSTVLA 191
WSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFTDAIDARSTVLA
Sbjct 123 WSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFTDAIDARSTVLA 182
Query 192 LAGGGTLSTWQADRLPG 208
LAGGGTLSTWQADRLPG
Sbjct 183 LAGGGTLSTWQADRLPG 199
>gi|296164843|ref|ZP_06847401.1| urease accessory protein UreD [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899809|gb|EFG79257.1| urease accessory protein UreD [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=215
Score = 317 bits (813), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 164/209 (79%), Positives = 180/209 (87%), Gaps = 1/209 (0%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
VVA PNRLPRI+CRGG+ ARRTAPDTVHLVSAAATPLGGD++ IRV+VE GA+LRLRSAA
Sbjct 7 VVAYPNRLPRIECRGGLAARRTAPDTVHLVSAAATPLGGDSIDIRVVVEPGARLRLRSAA 66
Query 61 ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 120
ATVALPG + LTSHAHWE+ V+GTLD+DLEPTVVAA ARH+S AT LHD +VR RERV
Sbjct 67 ATVALPGAEALTSHAHWEVAVSGTLDIDLEPTVVAADARHISSATFFLHDGAQVRFRERV 126
Query 121 QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT 180
Q+GRC EREGFWS SL+AD RP+LRHRVELGAGS ADDVIAAPRA+I ELRYP TAF
Sbjct 127 QVGRCEEREGFWSGSLRADCADRPVLRHRVELGAGSPADDVIAAPRASIHELRYPETAFA 186
Query 181 D-AIDARSTVLALAGGGTLSTWQADRLPG 208
AIDA STVL LAGGG LSTWQADRL G
Sbjct 187 HAAIDAGSTVLMLAGGGLLSTWQADRLAG 215
>gi|289443329|ref|ZP_06433073.1| urease accessory protein ureD [Mycobacterium tuberculosis T46]
gi|289416248|gb|EFD13488.1| urease accessory protein ureD [Mycobacterium tuberculosis T46]
Length=153
Score = 300 bits (767), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 152/153 (99%), Positives = 153/153 (100%), Gaps = 0/153 (0%)
Query 56 LRSAAATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVR 115
+RSAAATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVR
Sbjct 1 MRSAAATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVR 60
Query 116 LRERVQIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYP 175
LRERVQIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYP
Sbjct 61 LRERVQIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYP 120
Query 176 ATAFTDAIDARSTVLALAGGGTLSTWQADRLPG 208
ATAFTDAIDARSTVLALAGGGTLSTWQADRLPG
Sbjct 121 ATAFTDAIDARSTVLALAGGGTLSTWQADRLPG 153
>gi|183982733|ref|YP_001851024.1| urease accessory protein UreD [Mycobacterium marinum M]
gi|183176059|gb|ACC41169.1| urease accessory protein UreD [Mycobacterium marinum M]
Length=214
Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/208 (74%), Positives = 171/208 (83%), Gaps = 0/208 (0%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
+VAS NRLPRI CRGG+ AR TA DTV LVSAAATPLGGD+ +++IVE GA LRLRSAA
Sbjct 7 LVASRNRLPRIRCRGGIAARCTAADTVFLVSAAATPLGGDSFDLQIIVEEGASLRLRSAA 66
Query 61 ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 120
A V LPG T+TS A W+I+V G LDVDLEPT+VAA+ARHLS T++L RVRLRER+
Sbjct 67 AAVVLPGAQTMTSRARWKIEVAGELDVDLEPTIVAAAARHLSSVTVQLDGASRVRLRERI 126
Query 121 QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT 180
QIGRC EREGFWS SL AD GRP+LRHR+ELGAGSLADDVI APRAT+SELRYP FT
Sbjct 127 QIGRCGEREGFWSGSLHADLDGRPMLRHRMELGAGSLADDVICAPRATVSELRYPTGEFT 186
Query 181 DAIDARSTVLALAGGGTLSTWQADRLPG 208
DAI+A STVL LA GGTLSTWQA+RL G
Sbjct 187 DAIEAGSTVLQLAEGGTLSTWQAERLIG 214
>gi|118618417|ref|YP_906749.1| urease accessory protein UreD [Mycobacterium ulcerans Agy99]
gi|118570527|gb|ABL05278.1| urease accessory protein UreD [Mycobacterium ulcerans Agy99]
Length=214
Score = 296 bits (759), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 151/208 (73%), Positives = 170/208 (82%), Gaps = 0/208 (0%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
+VAS NRLPRI CRGG+ AR TA DTV LVSAAATPLGGD+ +++IVE GA LRLRSAA
Sbjct 7 LVASRNRLPRIRCRGGIAARCTAADTVFLVSAAATPLGGDSFDLQIIVEEGASLRLRSAA 66
Query 61 ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 120
A V LPG T+TS A W+I+V G LDVDLEPT+VAA+ARHLS T++L RVRLRER+
Sbjct 67 AAVVLPGAQTMTSRARWKIEVAGELDVDLEPTIVAAAARHLSSVTVQLDGASRVRLRERI 126
Query 121 QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT 180
QIGRC EREGFWS SL AD GRP+LRHR+ELGAGSLADDVI APRAT+ ELRYP FT
Sbjct 127 QIGRCGEREGFWSGSLHADLDGRPMLRHRMELGAGSLADDVICAPRATVGELRYPTGEFT 186
Query 181 DAIDARSTVLALAGGGTLSTWQADRLPG 208
DAI+A STVL LA GGTLSTWQA+RL G
Sbjct 187 DAIEAGSTVLQLAEGGTLSTWQAERLIG 214
>gi|240172036|ref|ZP_04750695.1| urease accessory protein ureD [Mycobacterium kansasii ATCC 12478]
Length=251
Score = 291 bits (745), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 149/207 (72%), Positives = 171/207 (83%), Gaps = 0/207 (0%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
+VA+ NRLPRI RGG+ AR TA DTV+LVSAAA PLGGD + IRV+VE+GA+LRLRSAA
Sbjct 14 LVAARNRLPRIQSRGGITARCTARDTVYLVSAAANPLGGDIVDIRVVVEQGARLRLRSAA 73
Query 61 ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 120
TVALPG +T S AHW+I+VTG LDVDLEPTVVAA+ARHLS LRLH+ +R RERV
Sbjct 74 GTVALPGAETPVSQAHWDIEVTGNLDVDLEPTVVAAAARHLSTVALRLHEGCEIRFRERV 133
Query 121 QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT 180
QIGR E EGFW SL+ADR+G P+LRHRVELGAGSLADDVIAAPRATI+ELRYPAT F+
Sbjct 134 QIGRYGESEGFWMGSLRADRNGLPMLRHRVELGAGSLADDVIAAPRATINELRYPATLFS 193
Query 181 DAIDARSTVLALAGGGTLSTWQADRLP 207
D + + ST+L LA GGTL TWQ DRLP
Sbjct 194 DGMPSTSTILTLADGGTLITWQGDRLP 220
>gi|118469519|ref|YP_887925.1| hypothetical protein MSMEG_3622 [Mycobacterium smegmatis str.
MC2 155]
gi|118170806|gb|ABK71702.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=212
Score = 244 bits (623), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 127/207 (62%), Positives = 154/207 (75%), Gaps = 3/207 (1%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
+VA P RLPRI+ GG+ R T PDTVHLVS AATPLGGDT+R+RV+VE GA+LR+R+ A
Sbjct 7 IVAVPGRLPRIEATGGLAGRCTQPDTVHLVSTAATPLGGDTLRVRVVVETGARLRIRTVA 66
Query 61 ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 120
AT+ LP +TL S A W+I+V G LD+D +PTVVA + H + L+L D RVR+RE++
Sbjct 67 ATLVLPSAETLRSEAVWDIEVAGELDLDPQPTVVAGGSAHHTQTRLQLADSARVRIREQI 126
Query 121 QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT 180
QIGR NER GFWS L AD G PLLRHR+ELG+G+L DD IAAPRA ISE+RYP F
Sbjct 127 QIGRSNERAGFWSGLLHADAAGAPLLRHRIELGSGALGDDEIAAPRACISEMRYPEPTF- 185
Query 181 DAIDARSTVLALAGGGTLSTWQADRLP 207
DA D VL LA GG+L+TWQ DRLP
Sbjct 186 DAPD--QLVLGLARGGSLATWQGDRLP 210
>gi|120404058|ref|YP_953887.1| putative urease accessory protein [Mycobacterium vanbaalenii
PYR-1]
gi|119956876|gb|ABM13881.1| putative urease accessory protein [Mycobacterium vanbaalenii
PYR-1]
Length=208
Score = 238 bits (607), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 125/206 (61%), Positives = 151/206 (74%), Gaps = 4/206 (1%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
+VA P R P I+C GG+ ARRT DTVHLVS+AATPLGGD + +R++VE GA+L +R+ A
Sbjct 7 IVARPGRSPHIECTGGIAARRTGQDTVHLVSSAATPLGGDAIAMRIVVEVGARLNVRTVA 66
Query 61 ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 120
ATVALPG T SHA W++DV G LD+D EPT+VAA++RH + + L D G +RLRERV
Sbjct 67 ATVALPGPVTTESHATWDLDVAGELDLDPEPTIVAAASRHHTSTRVTLTDAGVLRLRERV 126
Query 121 QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT 180
QIGR ER+GFWS SL AD G P LRHRVELG+GS ADD IAAPRA ISE YP +
Sbjct 127 QIGRTGERQGFWSGSLHADVDGTPCLRHRVELGSGSPADDEIAAPRACISEFHYPRS--- 183
Query 181 DAIDARSTVLALAGGGTLSTWQADRL 206
+DA LALA GG L+TWQ +RL
Sbjct 184 -EVDAPGVTLALAAGGCLATWQGERL 208
>gi|145223935|ref|YP_001134613.1| putative urease accessory protein [Mycobacterium gilvum PYR-GCK]
gi|315444267|ref|YP_004077146.1| hypothetical protein Mspyr1_26800 [Mycobacterium sp. Spyr1]
gi|145216421|gb|ABP45825.1| putative urease accessory protein [Mycobacterium gilvum PYR-GCK]
gi|315262570|gb|ADT99311.1| hypothetical protein Mspyr1_26800 [Mycobacterium sp. Spyr1]
Length=212
Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 130/206 (64%), Positives = 151/206 (74%), Gaps = 4/206 (1%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
+VA P R P I+ RG + RRT DTVHLVS+AATPLGGD + IR+IVE A+L +R+ A
Sbjct 7 IVARPGRTPHIEGRGAIAGRRTQSDTVHLVSSAATPLGGDAISIRIIVESRARLSVRTVA 66
Query 61 ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 120
ATVALPG T+ SHA W ++V G LD+D EPT+VAA+ARH + L L +G VR+RER+
Sbjct 67 ATVALPGAATVESHATWTLEVAGELDLDPEPTIVAATARHHAATHLTLAANGAVRVRERI 126
Query 121 QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT 180
QIGR ER+GFWS SL AD GRPLLRHRVELG GS ADD IAAPRA +SELRYP
Sbjct 127 QIGRTGERQGFWSGSLHADVDGRPLLRHRVELGHGSYADDDIAAPRACVSELRYPHV--- 183
Query 181 DAIDARSTVLALAGGGTLSTWQADRL 206
A DA T L LAGGG LSTWQ DRL
Sbjct 184 -ATDAAGTTLELAGGGGLSTWQGDRL 208
>gi|108799768|ref|YP_639965.1| putative urease accessory protein [Mycobacterium sp. MCS]
gi|119868878|ref|YP_938830.1| putative urease accessory protein [Mycobacterium sp. KMS]
gi|126435409|ref|YP_001071100.1| putative urease accessory protein [Mycobacterium sp. JLS]
gi|108770187|gb|ABG08909.1| putative urease accessory protein [Mycobacterium sp. MCS]
gi|119694967|gb|ABL92040.1| putative urease accessory protein [Mycobacterium sp. KMS]
gi|126235209|gb|ABN98609.1| putative urease accessory protein [Mycobacterium sp. JLS]
Length=210
Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 120/206 (59%), Positives = 146/206 (71%), Gaps = 4/206 (1%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
+VA R PRI+ GG+ RRT DTV+LVSAAATPLGGD + +RV+VE GA+L +RSAA
Sbjct 7 IVACAGRGPRIEHTGGIAVRRTGSDTVYLVSAAATPLGGDVINVRVVVEPGARLVVRSAA 66
Query 61 ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 120
ATV LP T S W+I+ G LD+D +PTVVA ++RHL+ +RL D G +RLRERV
Sbjct 67 ATVTLPSAATPESQTCWDIESAGALDIDPQPTVVAGASRHLTTTRIRLTDAGSIRLRERV 126
Query 121 QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT 180
QIGR EREGFWS +L AD G PLLRHRVELG GS+ DD + P A +SELRYP +F
Sbjct 127 QIGRSGEREGFWSGALHADVDGAPLLRHRVELGTGSVTDDALGRPLACVSELRYPEPSFA 186
Query 181 DAIDARSTVLALAGGGTLSTWQADRL 206
+ TVLALA GG L+TWQ +RL
Sbjct 187 ----SDGTVLALAAGGCLATWQGERL 208
>gi|169629514|ref|YP_001703163.1| putative urease accessory protein [Mycobacterium abscessus ATCC
19977]
gi|169241481|emb|CAM62509.1| Putative urease accessory protein (UreH?) [Mycobacterium abscessus]
Length=215
Score = 210 bits (535), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 114/207 (56%), Positives = 135/207 (66%), Gaps = 0/207 (0%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
++A RLPR+ C G +Q R T DTVHLV AA+PLGGD + +R+ V GA LR+RS A
Sbjct 7 IIAEKGRLPRLRCTGSLQGRITDTDTVHLVGVAASPLGGDEISVRIEVGEGAMLRVRSVA 66
Query 61 ATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 120
A VALPG + L S A W+ V G LD+D PT+VAA+A H SH T+R +RLRERV
Sbjct 67 AAVALPGRENLRSFATWDCAVAGLLDLDPAPTIVAANASHHSHVTVRGSVGVGLRLRERV 126
Query 121 QIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFT 180
QIGR E GFWS L AD PLLRHRVELG GS+ DD + P A ISELRYPAT
Sbjct 127 QIGRAGESSGFWSGQLDADIGATPLLRHRVELGTGSVTDDELGRPLALISELRYPATDSI 186
Query 181 DAIDARSTVLALAGGGTLSTWQADRLP 207
+ + T+L LAG TL TWQ RLP
Sbjct 187 EQLPTGGTLLGLAGDATLLTWQGQRLP 213
>gi|111022648|ref|YP_705620.1| urease accessory protein UreD [Rhodococcus jostii RHA1]
gi|110822178|gb|ABG97462.1| possible urease accessory protein UreD [Rhodococcus jostii RHA1]
Length=217
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/211 (49%), Positives = 126/211 (60%), Gaps = 5/211 (2%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
+VASP+R PRI GG+ AR T DTVH++ AATPLGGD I V V GA+L LRS A
Sbjct 7 IVASPDRSPRISAVGGLAARITGRDTVHVIGTAATPLGGDHWEITVRVLPGARLTLRSVA 66
Query 61 ATVALPGVDTLTSHAHWEIDVT--GTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRE 118
A++ALPG + S A W ++V LD LEPTV+A A H T+ L + + LRE
Sbjct 67 ASLALPGRGRVLSTAQWSVEVADDAVLDCALEPTVIAGGAEHRVETTVSLTESSTLLLRE 126
Query 119 RVQIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATA 178
RVQIGR E G W AD PLLRH++ELG G+++ DV+ P A SELRYP
Sbjct 127 RVQIGRAGESAGRWVGVTNADLGALPLLRHQLELGVGTVSHDVLDGPAAVTSELRYPDDR 186
Query 179 FTDAI-DARS--TVLALAGGGTLSTWQADRL 206
D D RS T L LA GG+L+T RL
Sbjct 187 VADVTGDIRSARTRLPLARGGSLTTRLGPRL 217
>gi|54024510|ref|YP_118752.1| putative urease accessory protein [Nocardia farcinica IFM 10152]
gi|54016018|dbj|BAD57388.1| putative urease accessory protein [Nocardia farcinica IFM 10152]
Length=264
Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/208 (50%), Positives = 126/208 (61%), Gaps = 2/208 (0%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
+VA LPRI+ GG+ ARRT P+TVHLV AATPLGGD + I V+V GA+L +R+ A
Sbjct 34 IVAEAGTLPRIEACGGLAARRTGPETVHLVGTAATPLGGDHLDITVVVGPGARLAVRAVA 93
Query 61 ATVALPGVDTLTSHAHWEIDVT--GTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRE 118
A +ALPG T S AHW +V G LD+D +VA A H + T L D R+R+RE
Sbjct 94 AALALPGRGTPVSTAHWRFEVAAYGELDIDTPAMIVAGGAEHRTATTALLDPDARLRMRE 153
Query 119 RVQIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATA 178
VQIGR ER G W L AD PL+RHR+ELG + DDV+ APRA +SELRYP
Sbjct 154 LVQIGRSGERHGRWRGDLTADLGDLPLVRHRIELGERTAVDDVLTAPRALVSELRYPDDR 213
Query 179 FTDAIDARSTVLALAGGGTLSTWQADRL 206
+ L LA GG+L T DRL
Sbjct 214 PVATHGVAAARLPLAPGGSLFTGLGDRL 241
>gi|226365152|ref|YP_002782935.1| urease accessory protein UreD [Rhodococcus opacus B4]
gi|226243642|dbj|BAH53990.1| putative urease accessory protein UreD [Rhodococcus opacus B4]
Length=217
Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/206 (49%), Positives = 124/206 (61%), Gaps = 7/206 (3%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
++ASP+R PRI GG+ AR T DTVH++ AATPLGGD + V V GA+L LRS A
Sbjct 7 ILASPDRSPRISAVGGLAARITGRDTVHVIGTAATPLGGDHWDVTVRVLPGARLTLRSVA 66
Query 61 ATVALPGVDTLTSHAHWEIDVT--GTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRE 118
A++ALPG + S A W ++V LD LEPTV+A A H T+ L + + LRE
Sbjct 67 ASLALPGRGRVLSTAQWSVEVEDDAVLDCALEPTVIAGGAEHRVETTVSLAESSTLLLRE 126
Query 119 RVQIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRY---- 174
RVQIGR E G W AD PLLRH++ELG G+++ DV+ P A SELRY
Sbjct 127 RVQIGRAGETTGRWVGVTNADLGALPLLRHQLELGVGTVSHDVLDGPAAVTSELRYPDDR 186
Query 175 PATAFTDAIDARSTVLALAGGGTLST 200
PA D ARS L LA GG+L+T
Sbjct 187 PADVTGDIRSARSR-LPLARGGSLTT 211
>gi|333919744|ref|YP_004493325.1| putative urease accessory protein [Amycolicicoccus subflavus
DQS3-9A1]
gi|333481965|gb|AEF40525.1| Putative urease accessory protein [Amycolicicoccus subflavus
DQS3-9A1]
Length=215
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/211 (45%), Positives = 116/211 (55%), Gaps = 11/211 (5%)
Query 3 ASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAAT 62
A R PRI GG+ AR T PDTVH++ A TPLGGD + +RV V GA+L +RS AA+
Sbjct 9 AEKGRSPRIRSSGGLAARITGPDTVHVIGTAMTPLGGDEISVRVTVGDGARLIVRSVAAS 68
Query 63 VALPGVDTLTSHAHWEIDVT--GTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERV 120
VALPG ++ S ++W V G LD + EP +VA A H + L L VRLRERV
Sbjct 69 VALPGEKSVRSASNWMFGVKTDGYLDWEPEPMIVAGRAEHDATTELDLAASATVRLRERV 128
Query 121 QIGRCNERE-GFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAF 179
QIGR E GFW +L A P++ H +ELG G DV+ PRA SEL YP
Sbjct 129 QIGRWGEHGLGFWRGTLSARVDTVPMVMHTLELGHG----DVLGTPRALTSELNYPGCGE 184
Query 180 TDAIDARSTVLA----LAGGGTLSTWQADRL 206
ID L L GG+L TW + L
Sbjct 185 EVLIDESPGGLGLRVPLPLGGSLMTWTGESL 215
>gi|296393819|ref|YP_003658703.1| urease accessory protein UreD [Segniliparus rotundus DSM 44985]
gi|296180966|gb|ADG97872.1| putative urease accessory protein UreD [Segniliparus rotundus
DSM 44985]
Length=227
Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 92/206 (45%), Positives = 112/206 (55%), Gaps = 9/206 (4%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
V A R+PR RG R T D +HLV AA PLGGD + + + V +GA L LR A
Sbjct 7 VDAVAGRVPRWRSRGAFTVRLTGQDQLHLVGVAAGPLGGDEVAVEIRVGQGASLALRGTA 66
Query 61 ATVALPGVDTLTSHAHWEIDVT--GTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRE 118
A+VALPG + S W++ V G L +D +P +VA A H L+L D LRE
Sbjct 67 ASVALPGAEVDRSSWLWDLAVEEGGQLLLDPQPLIVAGEASHHGTTALQLADGASAVLRE 126
Query 119 RVQIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYP--- 175
+ QIGR E G W SL D G+ LLRH V LG GS D AP A SE RYP
Sbjct 127 QAQIGRFQEEGGTWQGSLSVDLDGQELLRHSVGLGKGSATWDRFFAPAAMESEFRYPDHR 186
Query 176 -ATAFTDAIDARSTVLALAGGGTLST 200
A +DA +AR L LAGGG+L+T
Sbjct 187 AAHVSSDAWEAR---LPLAGGGSLTT 209
>gi|262202655|ref|YP_003273863.1| hypothetical protein Gbro_2752 [Gordonia bronchialis DSM 43247]
gi|262086002|gb|ACY21970.1| hypothetical protein Gbro_2752 [Gordonia bronchialis DSM 43247]
Length=233
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/216 (41%), Positives = 114/216 (53%), Gaps = 11/216 (5%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
+VA+P R PR+ GG+ R+T P TVHL+ AATPLGGDT+RI V V GA+L +R+ A
Sbjct 7 IVAAPGRSPRVSAAGGIAVRQTGPHTVHLIGTAATPLGGDTVRIVVDVTAGARLEVRTVA 66
Query 61 ATVALPGVDTLTSHAHWEIDV--TGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRE 118
A + LP S + W++ V L VD EPTV+A A H S T+ + V + E
Sbjct 67 AMIVLPSAQRTDSESAWDLTVGEGARLLVDPEPTVIAGGAAHRSTTTIAVAAGASVTIGE 126
Query 119 RVQIGRC-----NEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELR 173
QIGR + G W S+L D RPLLRHR +G+ S A R S R
Sbjct 127 HAQIGRSPGLNPADDLGGWQSALHVDAEHRPLLRHRTAIGSASPTG---LAHRGISSVFR 183
Query 174 YPATAFTDAIDA-RSTVLALAGGGTLSTWQADRLPG 208
+P D DA + L LA GG+L+T A G
Sbjct 184 FPDDRPEDVADAGYAARLMLAAGGSLTTALAGSAAG 219
>gi|317508612|ref|ZP_07966271.1| urease accessory protein [Segniliparus rugosus ATCC BAA-974]
gi|316253104|gb|EFV12515.1| urease accessory protein [Segniliparus rugosus ATCC BAA-974]
Length=245
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/177 (43%), Positives = 94/177 (54%), Gaps = 2/177 (1%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
V A R+PR G R T PD +H+VS+AA PLGGD + + + V GA L +R A
Sbjct 7 VEAVAGRVPRWRSEGAFTVRLTGPDQLHIVSSAAGPLGGDEVAVEIQVGEGASLTVRGVA 66
Query 61 ATVALPGVDTLTSHAHWEIDVT--GTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRE 118
A+VALPG + S W++D+ G L +D +P +VA A H LRL + E
Sbjct 67 ASVALPGAEAHRSSWSWDLDIAQGGRLLLDPQPVIVAGRAAHHGATVLRLAAGASAVVVE 126
Query 119 RVQIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYP 175
+ QIGR ER G W SL D G LLRH V LG GS D AP A S RYP
Sbjct 127 QAQIGRTGERNGTWRGSLSVDLDGEELLRHSVGLGEGSATWDEFFAPAALESVFRYP 183
>gi|284988817|ref|YP_003407371.1| putative urease accessory protein [Geodermatophilus obscurus
DSM 43160]
gi|284062062|gb|ADB73000.1| putative urease accessory protein [Geodermatophilus obscurus
DSM 43160]
Length=239
Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/204 (42%), Positives = 106/204 (52%), Gaps = 9/204 (4%)
Query 8 LPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPG 67
LP + G RRT P TVHLV+ A PLGGD RIR++VE GA+LR+RS AA VALP
Sbjct 19 LPVVRGGGQYAVRRTGPATVHLVATAFGPLGGDDARIRLVVEEGARLRVRSVAAAVALPS 78
Query 68 ---VDTLTSHAHWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGR 124
+ H V G LD+ EPTVVAA ARH++ L + E+V +GR
Sbjct 79 RSIAEPSVQRVH--ATVAGELDLAPEPTVVAARARHVAELEAELGPAAVLTSAEQVLLGR 136
Query 125 CNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFTD--- 181
E G W+ + + R GRPLL V+LG G+ A APRA S + A A
Sbjct 137 RGEEPGRWTGTTRVLREGRPLLHTTVDLGPGAPAWLPPVAPRAYASTVHLDAGAHPPQQP 196
Query 182 -AIDARSTVLALAGGGTLSTWQAD 204
A + L L GG T + W A+
Sbjct 197 VATGEDAVRLPLPGGWTATAWGAE 220
>gi|343928484|ref|ZP_08767932.1| urease accessory protein UreD [Gordonia alkanivorans NBRC 16433]
gi|343761669|dbj|GAA14858.1| urease accessory protein UreD [Gordonia alkanivorans NBRC 16433]
Length=247
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/192 (40%), Positives = 96/192 (50%), Gaps = 19/192 (9%)
Query 1 VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAA 60
+VA+ +R R GG+ R T+P L+ AATPLGGD + +R+ VE GA L + S A
Sbjct 7 IVATADRGVRHRATGGLAVRVTSPGHAQLIGTAATPLGGDEIVVRIRVEPGAHLSVGSVA 66
Query 61 ATVALPGVDTLTSHAHWEIDV--TGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRE 118
AT+ALP D L S WEI+V G L +D +PTVVA A H S L + L E
Sbjct 67 ATIALPARDRLDSRVRWEIEVGAGGRLRLDPQPTVVAGGAIHTSDIVAALDPSAVLDLYE 126
Query 119 RVQIGRC---------------NEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIA 163
VQIGR +R G W+ L+ G L HRV LGA + A +
Sbjct 127 HVQIGRSVQIDGATTTDLDRIERDRTGAWTGGLRVAVGGEVWLAHRVALGASTPAAAI-- 184
Query 164 APRATISELRYP 175
RA S RYP
Sbjct 185 GHRAMSSVFRYP 196
>gi|269127416|ref|YP_003300786.1| Urease accessory protein UreD [Thermomonospora curvata DSM 43183]
gi|268312374|gb|ACY98748.1| Urease accessory protein UreD [Thermomonospora curvata DSM 43183]
Length=256
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/198 (39%), Positives = 102/198 (52%), Gaps = 18/198 (9%)
Query 16 GVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTSHA 75
G A R PD V+LV AAA PLGGD + + V+V GA+L +RS A+T+ LPG
Sbjct 30 GPLALRQTPDAVYLVGAAAGPLGGDELTLEVVVGPGARLAIRSVASTLVLPGEGESRFTV 89
Query 76 HWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSS 135
+ G LD EPTV AA +RH + A++ L + G +R RE + +GR ER G +
Sbjct 90 RARVGAGGHLDFAPEPTVAAAGSRHRATASIDLAEGGALRWREELILGRHGERPGRHAGR 149
Query 136 LQADRHGRPLLRHRVEL-------------GAGSLADDVIAAPRATISELRYPATAFTDA 182
L GRPLLRH ++L GAG++ ++A P T S R A +
Sbjct 150 LDVTYGGRPLLRHELDLTDPAVRTSGAVLGGAGAVGSVLLAGPGLTASG-RDSAAHAAEG 208
Query 183 IDARSTVLALAGGGTLST 200
+ VL LAG G L T
Sbjct 209 L----AVLPLAGPGVLVT 222
>gi|134097249|ref|YP_001102910.1| putative urease accessory protein [Saccharopolyspora erythraea
NRRL 2338]
gi|291009020|ref|ZP_06566993.1| putative urease accessory protein [Saccharopolyspora erythraea
NRRL 2338]
gi|205830715|sp|A4F7G0.1|URED1_SACEN RecName: Full=Urease accessory protein ureD 1
gi|133909872|emb|CAL99984.1| putative urease accessory protein [Saccharopolyspora erythraea
NRRL 2338]
Length=255
Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/147 (43%), Positives = 83/147 (57%), Gaps = 2/147 (1%)
Query 14 RGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTS 73
R GV + P VHLV +A +P+GGD + +RV V GA LRL AATVALPG T S
Sbjct 33 RRGVASAAGGPAVVHLVGSATSPMGGDRVDLRVHVGAGAALRLSGTAATVALPGQRTGHS 92
Query 74 HA--HWEIDVTGTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGF 131
A E++ GT++ E TVV+ A H + + L + R R RE + +GR ER G
Sbjct 93 RATVRIEVEAGGTVEYLPEATVVSGRADHRADMRVELAEHARARCREVLVLGRYGERPGV 152
Query 132 WSSSLQADRHGRPLLRHRVELGAGSLA 158
++S R G PLLR R+++G LA
Sbjct 153 LTTSTHVVRAGTPLLRQRLDIGEQRLA 179
>gi|302530513|ref|ZP_07282855.1| predicted protein [Streptomyces sp. AA4]
gi|302439408|gb|EFL11224.1| predicted protein [Streptomyces sp. AA4]
Length=253
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/180 (38%), Positives = 99/180 (55%), Gaps = 10/180 (5%)
Query 28 HLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTSHAHWEIDVT--GTL 85
HLV++A PLGGD +R+ + VE GA+L+L AAT+ALPG+ + S + E+ V G+
Sbjct 53 HLVNSATAPLGGDELRLEIRVEAGAELKLSGVAATLALPGLREVPSLSTVEVVVEDGGSF 112
Query 86 DVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSLQADRHGRPL 145
+ EPTVV A A H++ L D R R RE + +GR ER G SS++ G P
Sbjct 113 EYLPEPTVVTARADHVAVLRADLAADARFRTREVLVLGREGERPGRLSSTVHVTCGGVPA 172
Query 146 LRHRVELGAGSL--ADDVIAAPRATISELRY---PATAFTDAIDARSTVLALAGGGTLST 200
LR +G L + V+A R ++E+ + P A + +R+ LA GGTL+T
Sbjct 173 LRQTQTVGEALLDASLAVLAGQRVLVTEVEFGGPPRRAESGPWWSRT---PLAAGGTLTT 229
>gi|336177224|ref|YP_004582599.1| Urease accessory protein ureD [Frankia symbiont of Datisca glomerata]
gi|334858204|gb|AEH08678.1| Urease accessory protein ureD [Frankia symbiont of Datisca glomerata]
Length=414
Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/116 (48%), Positives = 70/116 (61%), Gaps = 2/116 (1%)
Query 26 TVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTS--HAHWEIDVTG 83
TV+LV+AAA PL GD +R+ V V G +L LR+ AATVALPG D S H ++ G
Sbjct 108 TVYLVNAAAGPLAGDQLRLDVTVGAGVRLVLRTTAATVALPGRDERPSLFDVHADVGPGG 167
Query 84 TLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSLQAD 139
L+ EPTV A RHL AT+RL D R+ RE + +GR E G SS+L+ D
Sbjct 168 ALEYLPEPTVAAHGCRHLMRATIRLAADARLLWREEIVLGRFGEPPGSISSTLRVD 223
>gi|340531933|gb|AEK47138.1| urease accessory protein UreD [Amycolatopsis mediterranei S699]
Length=233
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/129 (42%), Positives = 75/129 (59%), Gaps = 2/129 (1%)
Query 27 VHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTSHAHWEIDVT--GT 84
VHLV++A +PLGGD + + + V RGA LRL AAT+ALPG+ S + E+ V G+
Sbjct 35 VHLVNSATSPLGGDDLLLSIHVGRGASLRLSGVAATLALPGLHGEESLSTVEVVVEPGGS 94
Query 85 LDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSLQADRHGRP 144
L+ EPTV+ A ARH + L D + RE + +GR ER G S+SL R P
Sbjct 95 LEYLPEPTVITARARHRAVFRASLASDAYLHTREVLVLGRAGERPGSLSTSLSVTRGSVP 154
Query 145 LLRHRVELG 153
+LR + +G
Sbjct 155 VLRQTLSVG 163
>gi|300790252|ref|YP_003770543.1| urease accessory protein UreD [Amycolatopsis mediterranei U32]
gi|299799766|gb|ADJ50141.1| urease accessory protein UreD [Amycolatopsis mediterranei U32]
Length=239
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/129 (42%), Positives = 75/129 (59%), Gaps = 2/129 (1%)
Query 27 VHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTSHAHWEIDVT--GT 84
VHLV++A +PLGGD + + + V RGA LRL AAT+ALPG+ S + E+ V G+
Sbjct 41 VHLVNSATSPLGGDDLLLSIHVGRGASLRLSGVAATLALPGLHGEESLSTVEVVVEPGGS 100
Query 85 LDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSLQADRHGRP 144
L+ EPTV+ A ARH + L D + RE + +GR ER G S+SL R P
Sbjct 101 LEYLPEPTVITARARHRAVFRASLASDAYLHTREVLVLGRAGERPGSLSTSLSVTRGSVP 160
Query 145 LLRHRVELG 153
+LR + +G
Sbjct 161 VLRQTLSVG 169
>gi|111220895|ref|YP_711689.1| putative urease accessory protein UreD [Frankia alni ACN14a]
gi|111148427|emb|CAJ60098.1| Putative urease accessory protein UreD [Frankia alni ACN14a]
Length=271
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/146 (42%), Positives = 74/146 (51%), Gaps = 18/146 (12%)
Query 26 TVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTSHAHWEIDVT--G 83
TVHLV+ AA PL GD +R+ + V G +L LRS AATVALPG S +V G
Sbjct 51 TVHLVNGAAGPLAGDDLRLDISVGGGVRLVLRSVAATVALPGRGPGPSRLTVTAEVADGG 110
Query 84 TLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSLQADRHGR 143
LD+ EPTVVA A H +RL R+RLRE + +GR E G S+L+ D G
Sbjct 111 ELDLGPEPTVVADGADHQISTDVRLAATARLRLREEILLGRFGEPGGSILSTLRVDVAGG 170
Query 144 ----------------PLLRHRVELG 153
PLLR + LG
Sbjct 171 AEGPGADLAGGPFGWVPLLRQELLLG 196
>gi|205830842|sp|Q0RQS5.2|URED_FRAAA RecName: Full=Urease accessory protein ureD
Length=298
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/146 (42%), Positives = 74/146 (51%), Gaps = 18/146 (12%)
Query 26 TVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTSHAHWEIDVT--G 83
TVHLV+ AA PL GD +R+ + V G +L LRS AATVALPG S +V G
Sbjct 78 TVHLVNGAAGPLAGDDLRLDISVGGGVRLVLRSVAATVALPGRGPGPSRLTVTAEVADGG 137
Query 84 TLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSLQADRHGR 143
LD+ EPTVVA A H +RL R+RLRE + +GR E G S+L+ D G
Sbjct 138 ELDLGPEPTVVADGADHQISTDVRLAATARLRLREEILLGRFGEPGGSILSTLRVDVAGG 197
Query 144 ----------------PLLRHRVELG 153
PLLR + LG
Sbjct 198 AEGPGADLAGGPFGWVPLLRQELLLG 223
>gi|337764364|emb|CCB73073.1| Urease accessory protein ureD [Streptomyces cattleya NRRL 8057]
Length=265
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/201 (33%), Positives = 94/201 (47%), Gaps = 12/201 (5%)
Query 6 NRLPRIDCRGGVQARRTAPDT----VHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAA 61
RLP +D G + RRT P V +V A PLGGD +R+ V GA+L + +AAA
Sbjct 30 TRLPVLDGEGPLAPRRTRPSGPGARVTMVGAMTAPLGGDRLRVETEVRAGARLDVDAAAA 89
Query 62 TVALPGVDTLTSHAHWEIDVTGTLDVDL----EPTVVAASARHLSHATLRLHDDGRVRLR 117
TV+LPGV + A +++ +T +L EP + AA + + L D R+ LR
Sbjct 90 TVSLPGVT--GAPAGYDVRLTVGPGAELRWLPEPLIAAAGSDLVLTTEAELAADARLVLR 147
Query 118 ERVQIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAG--SLADDVIAAPRATISELRYP 175
E +GR E G + L R GRPLL + G G + + A A + +L
Sbjct 148 EEQVLGRAGEAPGRLVTRLSVRRRGRPLLDQELAFGPGVPGWSGPAVLAGYAAVGQLLLA 207
Query 176 ATAFTDAIDARSTVLALAGGG 196
F D ++ A AG G
Sbjct 208 GPEFADGAGEAYSLPAAAGEG 228
>gi|256395573|ref|YP_003117137.1| urease accessory protein [Catenulispora acidiphila DSM 44928]
gi|256361799|gb|ACU75296.1| urease accessory protein [Catenulispora acidiphila DSM 44928]
Length=270
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/146 (37%), Positives = 79/146 (55%), Gaps = 5/146 (3%)
Query 27 VHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTS--HAHWEIDVTGT 84
VHLV+ AA P+GGD + + V + GA++R+RS AA++ALP S I+
Sbjct 44 VHLVAGAAGPIGGDELHLGVHLGPGARVRIRSVAASLALPATQPCESTLDIRIRIESGAA 103
Query 85 LDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSLQADRHGRP 144
LD +P + A ARH + ++ + DD + +E+ +GR E G + L+ R GRP
Sbjct 104 LDWSAQPLIAARGARHRTTVSIEMTDDAHLIWQEQTLLGRHGEEPGSVVTRLRVRRGGRP 163
Query 145 LLRHRVELG---AGSLADDVIAAPRA 167
LL H + +G GSL V+ A RA
Sbjct 164 LLDHTLAVGPAHPGSLGPAVVGADRA 189
>gi|158317450|ref|YP_001509958.1| putative urease accessory protein UreD [Frankia sp. EAN1pec]
gi|205830830|sp|A8L7B7.1|URED_FRASN RecName: Full=Urease accessory protein ureD
gi|158112855|gb|ABW15052.1| putative urease accessory protein UreD [Frankia sp. EAN1pec]
Length=297
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/208 (36%), Positives = 90/208 (44%), Gaps = 29/208 (13%)
Query 26 TVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALP--GVDTLTSHAHWEIDVTG 83
VHLV A PL GD + + +IV GA L +RS AATVALP G T ++
Sbjct 62 VVHLVGGAGGPLAGDDLGLDIIVGAGAHLVVRSVAATVALPGHGAGPSTFALRAQVGPAA 121
Query 84 TLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSLQADRHG- 142
L EPTVVA ARH + L D R+R RE + +GR E G +SL+ D
Sbjct 122 MLSFLPEPTVVARGARHRMTTEIILAADARLRYREEIILGRFGEPGGDLETSLRVDVDQA 181
Query 143 -------------------RPLLRHRVELG---AGSLADDVIAAPRATISEL-RYPATAF 179
RPLL + LG G V+A RA S L PAT
Sbjct 182 PGPAPTTDAGTAPAPGPRRRPLLHQELRLGPRVPGVAGPAVLAGARAVGSVLVAGPATGL 241
Query 180 ---TDAIDARSTVLALAGGGTLSTWQAD 204
T A+ ++ LAG G L AD
Sbjct 242 EPVTAAVGDSVALMPLAGPGVLVCALAD 269
>gi|256374655|ref|YP_003098315.1| urease accessory protein UreD [Actinosynnema mirum DSM 43827]
gi|255918958|gb|ACU34469.1| urease accessory protein UreD [Actinosynnema mirum DSM 43827]
Length=281
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/137 (41%), Positives = 76/137 (56%), Gaps = 3/137 (2%)
Query 19 ARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTSHAHWE 78
AR A VHLVS+ PLGGD + +R+ V GA L LR AATVALPG S +
Sbjct 36 ARSDAHALVHLVSSITAPLGGDELELRITVGPGAALVLRGVAATVALPGHRPGGSRSRVL 95
Query 79 IDVT--GTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSL 136
++V G+++ EPTVV A A H + L + R+R RE + +GR ER G +++
Sbjct 96 LEVAEGGSVEHLPEPTVVTARADHEAVLEAELAEGARLRAREVLVLGRLGERPGRLTTTT 155
Query 137 QADRHGRPLLRHRVELG 153
R G PLLR + +G
Sbjct 156 SV-RRGGPLLRQSLTIG 171
>gi|318062798|ref|ZP_07981519.1| urease accessory protein [Streptomyces sp. SA3_actG]
Length=263
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/155 (38%), Positives = 74/155 (48%), Gaps = 6/155 (3%)
Query 8 LPRIDCRGGVQARRT--APDTVH--LVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATV 63
LP + G + ARRT P H LV A PLGGD +R GA+LR+ S AAT+
Sbjct 31 LPVLSGEGPLAARRTRGVPGAAHVVLVGAMGGPLGGDAYEVRAEAGPGARLRVGSVAATL 90
Query 64 ALPGVDTLTSHAHWEIDVT--GTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQ 121
ALPG T S +++ G L+ EP V A H + L + R+ LRE
Sbjct 91 ALPGQSTPRSTYAVDLEAAGDGLLEWLPEPVVAVAGCDLAQHTRVTLAEGARLALREEQV 150
Query 122 IGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGS 156
+GR E G +S L GRPLL LG G+
Sbjct 151 LGRSGESPGRITSRLTVRLAGRPLLDQETCLGTGA 185
>gi|288920427|ref|ZP_06414736.1| Urease accessory protein UreD [Frankia sp. EUN1f]
gi|288348156|gb|EFC82424.1| Urease accessory protein UreD [Frankia sp. EUN1f]
Length=306
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/115 (41%), Positives = 61/115 (54%), Gaps = 2/115 (1%)
Query 27 VHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALP--GVDTLTSHAHWEIDVTGT 84
+HLV A PL GD + + + V GA L +RS AATVALP G T H ++
Sbjct 71 IHLVGGAGGPLAGDDLGLDITVGAGAHLVVRSVAATVALPGHGAGPSTFAVHAQVGPAAA 130
Query 85 LDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSLQAD 139
L EPTVVAA ARH + L D +R RE + +GR E G ++SL+ D
Sbjct 131 LTWLPEPTVVAAGARHRMTTEITLTPDSSLRYREEILLGRFGEPGGSLTTSLRVD 185
>gi|333028578|ref|ZP_08456642.1| putative urease accessory protein [Streptomyces sp. Tu6071]
gi|332748430|gb|EGJ78871.1| putative urease accessory protein [Streptomyces sp. Tu6071]
Length=231
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/152 (37%), Positives = 72/152 (48%), Gaps = 6/152 (3%)
Query 11 IDCRGGVQARRT--APDTVH--LVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALP 66
+ G + ARRT P H LV A PLGGD +R GA+LR+ S AAT+ALP
Sbjct 2 LSGEGPLAARRTRGVPGAAHVVLVGAMGGPLGGDAYEVRAEAGPGARLRVGSVAATLALP 61
Query 67 GVDTLTSHAHWEIDVT--GTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGR 124
G T S +++ G L+ EP V A H + L + R+ LRE +GR
Sbjct 62 GQSTPRSTYAVDLEAAGDGLLEWLPEPVVAVAGCDLAQHTRVTLAEGARLALREEQVLGR 121
Query 125 CNEREGFWSSSLQADRHGRPLLRHRVELGAGS 156
E G +S L GRPLL LG G+
Sbjct 122 SGESPGRITSRLTVRLAGRPLLDQETCLGTGA 153
>gi|312199703|ref|YP_004019764.1| urease accessory protein UreD [Frankia sp. EuI1c]
gi|311231039|gb|ADP83894.1| putative urease accessory protein UreD [Frankia sp. EuI1c]
Length=314
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/141 (37%), Positives = 69/141 (49%), Gaps = 13/141 (9%)
Query 26 TVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTS--HAHWEIDVTG 83
TVHLV AAA PL GD +R+ + V G +L LRS AAT+A+PG S H ++ G
Sbjct 65 TVHLVGAAAGPLTGDQLRLDISVGTGVRLVLRSVAATLAMPGHGAGPSVLEIHADVATGG 124
Query 84 TLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSLQADRHG- 142
LD+ EPTV H + G +R RE + +GR E G + L+ D
Sbjct 125 ALDLLPEPTVAVRGCWHRMVGRATVATGGWLRWREEILLGRFGEPSGQIETDLRVDVRSA 184
Query 143 ----------RPLLRHRVELG 153
RPLLR ++ LG
Sbjct 185 SAGGATGPGRRPLLRQQLTLG 205
>gi|205830725|sp|A4FCP0.2|URED2_SACEN RecName: Full=Urease accessory protein ureD 2
Length=283
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/143 (39%), Positives = 74/143 (52%), Gaps = 12/143 (8%)
Query 16 GVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTSHA 75
G QAR V +VSA + PLGGD + I V VE GAQL + +AAAT+AL G T HA
Sbjct 65 GSQAR------VCVVSAMSAPLGGDRLAIDVSVEAGAQLEITTAAATLALRGAT--TDHA 116
Query 76 HWEIDVT----GTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGF 131
+++ +T TL +P + + T+ L R+ LRE + +GR +E G
Sbjct 117 TYDVTLTVGEQATLYWLPQPLISTRGSNLRQTYTVDLAPTARLILREELILGRAHEPPGD 176
Query 132 WSSSLQADRHGRPLLRHRVELGA 154
SS L R GRPLL G+
Sbjct 177 LSSHLTVHRDGRPLLAQHTTFGS 199
>gi|86739543|ref|YP_479943.1| putative urease accessory protein [Frankia sp. CcI3]
gi|123737749|sp|Q2JES8.1|URED_FRASC RecName: Full=Urease accessory protein ureD
gi|86566405|gb|ABD10214.1| putative urease accessory protein [Frankia sp. CcI3]
Length=319
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/140 (39%), Positives = 68/140 (49%), Gaps = 12/140 (8%)
Query 26 TVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTSHAHWEIDVT--G 83
TVHLV+A A PL GD + + + V G +L +RS AATVALPG S V G
Sbjct 89 TVHLVNATAGPLAGDDLGLDISVGSGVRLVVRSVAATVALPGHGPGPSRFTVSARVAPGG 148
Query 84 TLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSLQADRHGR 143
LD EPTV A + HL + L +RLRE + +GR E G S+L+ D
Sbjct 149 ALDFAPEPTVAARGSDHLLVTDVHLATTAWLRLREEIVLGRFGETTGSIRSTLRVDMDAH 208
Query 144 ----------PLLRHRVELG 153
PLLR + LG
Sbjct 209 AEVDPPSEPTPLLRQDLVLG 228
>gi|291010056|ref|ZP_06568029.1| urease accessory protein [Saccharopolyspora erythraea NRRL 2338]
Length=262
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/143 (39%), Positives = 74/143 (52%), Gaps = 12/143 (8%)
Query 16 GVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTSHA 75
G QAR V +VSA + PLGGD + I V VE GAQL + +AAAT+AL G T HA
Sbjct 36 GSQAR------VCVVSAMSAPLGGDRLAIDVSVEAGAQLEITTAAATLALRGAT--TDHA 87
Query 76 HWEIDVT----GTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGF 131
+++ +T TL +P + + T+ L R+ LRE + +GR +E G
Sbjct 88 TYDVTLTVGEQATLYWLPQPLISTRGSNLRQTYTVDLAPTARLILREELILGRAHEPPGD 147
Query 132 WSSSLQADRHGRPLLRHRVELGA 154
SS L R GRPLL G+
Sbjct 148 LSSHLTVHRDGRPLLAQHTTFGS 170
>gi|238059611|ref|ZP_04604320.1| urease accessory protein ureD 3 [Micromonospora sp. ATCC 39149]
gi|237881422|gb|EEP70250.1| urease accessory protein ureD 3 [Micromonospora sp. ATCC 39149]
Length=262
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/130 (37%), Positives = 64/130 (50%), Gaps = 2/130 (1%)
Query 26 TVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTS--HAHWEIDVTG 83
TV++V AA PLGGD + + V V GA LR+ S AA+VALPG S H +
Sbjct 58 TVYVVGGAAGPLGGDDLLLEVEVGPGAALRVGSVAASVALPGRPAAVSRMRVHAVVHAGA 117
Query 84 TLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSLQADRHGR 143
TL E V AA H++ + + L R+ R+ + GR E G D GR
Sbjct 118 TLHWVPEQLVAAAGCDHVAESWVELAAGARLTWRDELICGRYGESPGDAVVRTSVDHAGR 177
Query 144 PLLRHRVELG 153
PLLR + +G
Sbjct 178 PLLRQSMAVG 187
>gi|297162285|gb|ADI11997.1| urease accessory protein [Streptomyces bingchenggensis BCW-1]
Length=301
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/157 (36%), Positives = 79/157 (51%), Gaps = 10/157 (6%)
Query 8 LPRIDCRGGVQARRT----APDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATV 63
LP + G + RRT A V +V A + PLGGD + + V+V GA+L + SAAAT+
Sbjct 51 LPVLAGDGPLALRRTRAVGAEARVTVVGAMSGPLGGDRIGLDVVVGPGARLSVGSAAATI 110
Query 64 ALPGVDTLTSHAHWEIDVT----GTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRER 119
ALPG AH+++ +T TL EP + A ++ + L R+ LRE
Sbjct 111 ALPGRS--GEPAHYDVRLTVGDGATLCWQPEPVISARASDLRMTCRVELAPTARLLLREE 168
Query 120 VQIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGS 156
+GR E G ++ L R GRPLL + G G+
Sbjct 169 QVLGRAGEPPGRLTTRLTVYRAGRPLLDQELGYGPGT 205
>gi|302540385|ref|ZP_07292727.1| putative urease accessory protein [Streptomyces hygroscopicus
ATCC 53653]
gi|302458003|gb|EFL21096.1| putative urease accessory protein [Streptomyces himastatinicus
ATCC 53653]
Length=266
Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/134 (39%), Positives = 68/134 (51%), Gaps = 6/134 (4%)
Query 27 VHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTSHAHWEIDVT---- 82
V +V A + PLGGD + + V GA+LR+ SAAAT+ALPG AH+ I +T
Sbjct 51 VTVVGAMSAPLGGDHIALTADVGPGARLRVGSAAATLALPGRS--AEPAHYAIRLTVADG 108
Query 83 GTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSLQADRHG 142
TL EP + A + T+ L R+ LRE +GR E G +S L R G
Sbjct 109 ATLHWLPEPLISAHGSDLRMTTTVELAPTARLVLREEQILGRFGEPPGALTSRLTVHRAG 168
Query 143 RPLLRHRVELGAGS 156
RPLL + G G+
Sbjct 169 RPLLDQELSYGPGA 182
>gi|134099079|ref|YP_001104740.1| urease accessory protein [Saccharopolyspora erythraea NRRL 2338]
gi|133911702|emb|CAM01815.1| urease accessory protein [Saccharopolyspora erythraea NRRL 2338]
Length=208
Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/123 (39%), Positives = 64/123 (53%), Gaps = 6/123 (4%)
Query 36 PLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTSHAHWEIDVT----GTLDVDLEP 91
PLGGD + I V VE GAQL + +AAAT+AL G T HA +++ +T TL +P
Sbjct 4 PLGGDRLAIDVSVEAGAQLEITTAAATLALRGAT--TDHATYDVTLTVGEQATLYWLPQP 61
Query 92 TVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSLQADRHGRPLLRHRVE 151
+ + T+ L R+ LRE + +GR +E G SS L R GRPLL
Sbjct 62 LISTRGSNLRQTYTVDLAPTARLILREELILGRAHEPPGDLSSHLTVHRDGRPLLAQHTT 121
Query 152 LGA 154
G+
Sbjct 122 FGS 124
>gi|290962156|ref|YP_003493338.1| urease accessory protein [Streptomyces scabiei 87.22]
gi|260651682|emb|CBG74807.1| urease accessory protein [Streptomyces scabiei 87.22]
Length=268
Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/155 (35%), Positives = 76/155 (50%), Gaps = 6/155 (3%)
Query 8 LPRIDCRGGVQARRTAPDT----VHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATV 63
LP ++ G + RRT V LV A + PLGGD + V GA+L + SAAAT+
Sbjct 39 LPVLESDGPLALRRTRGSGDEARVMLVGAMSGPLGGDRFAVEAEVGAGARLHVGSAAATI 98
Query 64 ALPGVDTLTSHAHWEIDVTGTLDVDLEP-TVVAASARHLSHAT-LRLHDDGRVRLRERVQ 121
ALPG +H I+V ++ P +++A L +T + L + R+ RE
Sbjct 99 ALPGQAKGEAHYGVRIEVAAGGELRWLPEQLISAKGSDLYVSTRVELSEGARLVFREEQV 158
Query 122 IGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGS 156
+GR E G +S L GRPLL +V G G+
Sbjct 159 LGRSGEEPGRLTSRLGVWSGGRPLLDQQVSCGPGA 193
>gi|345011142|ref|YP_004813496.1| Urease accessory protein ureD [Streptomyces violaceusniger Tu
4113]
gi|344037491|gb|AEM83216.1| Urease accessory protein ureD [Streptomyces violaceusniger Tu
4113]
Length=325
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/134 (37%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query 27 VHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTSHAHWEIDVT---- 82
V +V A + PLGGD + + V GA+L + SAAAT+ALPG AH+EI +T
Sbjct 121 VTVVGAMSAPLGGDRIALEVTAGPGARLHIGSAAATIALPG--RTGRPAHYEIRLTVADG 178
Query 83 GTLDVDLEPTVVAASARHLSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSLQADRHG 142
TL EP + A + + L R+ LRE +GR E G ++ L R G
Sbjct 179 ATLHWLPEPLISAQGSDLRMTTRVELAPTARLVLREEQILGRTGESPGHLTARLTVHRAG 238
Query 143 RPLLRHRVELGAGS 156
RPLL + G G+
Sbjct 239 RPLLDQELSYGPGA 252
>gi|331700223|ref|YP_004336462.1| urease accessory protein ureD [Pseudonocardia dioxanivorans CB1190]
gi|326954912|gb|AEA28609.1| Urease accessory protein ureD [Pseudonocardia dioxanivorans CB1190]
Length=283
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/147 (41%), Positives = 71/147 (49%), Gaps = 18/147 (12%)
Query 26 TVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPG---VDTLTSHAHWEIDVT 82
TVHLV +A TPL GD + + V V GA L L AA VALPG TLT E+D
Sbjct 45 TVHLVGSATTPLAGDDVELDVRVGPGAALVLTGVAAAVALPGAGRASTLTVRV--ELDDG 102
Query 83 GTLDVDLEPTVVAASARH--LSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSLQADR 140
L EPTVV + A H L HAT LH R+R RE + GR E G ++ + +
Sbjct 103 ACLQYLPEPTVVTSRADHRTLLHAT--LHPTARLRAREVLVGGRSGEPSGRYAGTTRVVE 160
Query 141 HGRP---------LLRHRVELGAGSLA 158
RP LL ELG LA
Sbjct 161 RARPAPGTTSDRVLLHQTQELGDAGLA 187
Lambda K H
0.320 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 239574757050
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40