BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1854c Length=463 Score E Sequences producing significant alignments: (Bits) Value gi|15608991|ref|NP_216370.1| NADH dehydrogenase [Mycobacterium t... 937 0.0 gi|289574536|ref|ZP_06454763.1| NADH dehydrogenase ndh [Mycobact... 937 0.0 gi|326903456|gb|EGE50389.1| NADH dehydrogenase ndh [Mycobacteriu... 936 0.0 gi|306779853|ref|ZP_07418190.1| NADH dehydrogenase ndh [Mycobact... 935 0.0 gi|340626862|ref|YP_004745314.1| putative NADH dehydrogenase NDH... 934 0.0 gi|121637757|ref|YP_977980.1| putative NADH dehydrogenase ndh [M... 934 0.0 gi|31793044|ref|NP_855537.1| NADH dehydrogenase [Mycobacterium b... 933 0.0 gi|306784596|ref|ZP_07422918.1| NADH dehydrogenase ndh [Mycobact... 928 0.0 gi|167970333|ref|ZP_02552610.1| NADH dehydrogenase ndh [Mycobact... 898 0.0 gi|118618416|ref|YP_906748.1| NADH dehydrogenase Ndh [Mycobacter... 854 0.0 gi|15828111|ref|NP_302374.1| dehydrogenase [Mycobacterium leprae... 847 0.0 gi|240172037|ref|ZP_04750696.1| DoxD family protein/pyridine nuc... 839 0.0 gi|342861249|ref|ZP_08717897.1| DoxD family protein/pyridine nuc... 830 0.0 gi|254821981|ref|ZP_05226982.1| DoxD family protein/pyridine nuc... 827 0.0 gi|41407659|ref|NP_960495.1| hypothetical protein MAP1561c [Myco... 823 0.0 gi|254775343|ref|ZP_05216859.1| DoxD family protein/pyridine nuc... 821 0.0 gi|296164844|ref|ZP_06847402.1| NADH dehydrogenase [Mycobacteriu... 798 0.0 gi|333990583|ref|YP_004523197.1| NADH dehydrogenase Ndh [Mycobac... 794 0.0 gi|120404057|ref|YP_953886.1| FAD-dependent pyridine nucleotide-... 773 0.0 gi|126435408|ref|YP_001071099.1| NADH dehydrogenase [Mycobacteri... 768 0.0 gi|108799767|ref|YP_639964.1| NADH dehydrogenase [Mycobacterium ... 767 0.0 gi|118469404|ref|YP_887924.1| NADH dehydrogenase [Mycobacterium ... 766 0.0 gi|145223934|ref|YP_001134612.1| FAD-dependent pyridine nucleoti... 763 0.0 gi|169629515|ref|YP_001703164.1| NADH dehydrogenase (NDH) [Mycob... 707 0.0 gi|296140013|ref|YP_003647256.1| FAD-dependent pyridine nucleoti... 647 0.0 gi|343928485|ref|ZP_08767933.1| NADH dehydrogenase [Gordonia alk... 627 2e-177 gi|262202653|ref|YP_003273861.1| NADH dehydrogenase (ubiquinone)... 625 6e-177 gi|226366452|ref|YP_002784235.1| NADH dehydrogenase [Rhodococcus... 623 2e-176 gi|312139795|ref|YP_004007131.1| NADH dehydrogenase [Rhodococcus... 622 4e-176 gi|229493549|ref|ZP_04387334.1| NADH dehydrogenase [Rhodococcus ... 620 2e-175 gi|226306598|ref|YP_002766558.1| NADH dehydrogenase [Rhodococcus... 619 3e-175 gi|326384950|ref|ZP_08206624.1| NADH dehydrogenase (ubiquinone) ... 610 2e-172 gi|339294790|gb|AEJ46901.1| NADH dehydrogenase ndh [Mycobacteriu... 598 5e-169 gi|111024206|ref|YP_707178.1| NADH dehydrogenase [Rhodococcus jo... 595 5e-168 gi|333920782|ref|YP_004494363.1| NADH dehydrogenase [Amycolicico... 595 5e-168 gi|319949031|ref|ZP_08023128.1| NADH dehydrogenase [Dietzia cinn... 592 4e-167 gi|54024511|ref|YP_118753.1| putative NADH dehydrogenase [Nocard... 587 1e-165 gi|289441770|ref|ZP_06431514.1| membrane NADH dehydrogenase ndhA... 584 9e-165 gi|15607533|ref|NP_214906.1| membrane NADH dehydrogenase [Mycoba... 584 1e-164 gi|183980712|ref|YP_001849003.1| NADH dehydrogenase Ndh_1 [Mycob... 583 2e-164 gi|111221072|ref|YP_711866.1| NADH dehydrogenase [Frankia alni A... 582 5e-164 gi|31791568|ref|NP_854061.1| membrane NADH dehydrogenase [Mycoba... 582 5e-164 gi|111024223|ref|YP_707195.1| NADH dehydrogenase [Rhodococcus jo... 580 2e-163 gi|158316665|ref|YP_001509173.1| FAD-dependent pyridine nucleoti... 578 6e-163 gi|111022305|ref|YP_705277.1| dehydrogenase [Rhodococcus jostii ... 577 2e-162 gi|226359938|ref|YP_002777716.1| NADH dehydrogenase [Rhodococcus... 575 5e-162 gi|308395349|ref|ZP_07491986.2| membrane NADH dehydrogenase ndhA... 575 5e-162 gi|86739688|ref|YP_480088.1| NADH dehydrogenase [Frankia sp. CcI... 573 2e-161 gi|312199570|ref|YP_004019631.1| FAD-dependent pyridine nucleoti... 573 2e-161 gi|288923057|ref|ZP_06417210.1| NADH dehydrogenase (ubiquinone) ... 573 2e-161 >gi|15608991|ref|NP_216370.1| NADH dehydrogenase [Mycobacterium tuberculosis H37Rv] gi|15841322|ref|NP_336359.1| NADH dehydrogenase [Mycobacterium tuberculosis CDC1551] gi|148661660|ref|YP_001283183.1| NADH dehydrogenase Ndh [Mycobacterium tuberculosis H37Ra] 44 more sequence titles Length=463 Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/463 (100%), Positives = 463/463 (100%), Gaps = 0/463 (0%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT Sbjct 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG Sbjct 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP Sbjct 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG Sbjct 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA Sbjct 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 Query 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE Sbjct 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 Query 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT Sbjct 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 Query 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 463 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS Sbjct 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 463 >gi|289574536|ref|ZP_06454763.1| NADH dehydrogenase ndh [Mycobacterium tuberculosis K85] gi|289538967|gb|EFD43545.1| NADH dehydrogenase ndh [Mycobacterium tuberculosis K85] Length=463 Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/463 (99%), Positives = 463/463 (100%), Gaps = 0/463 (0%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT Sbjct 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLI+AAG Sbjct 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIIAAG 120 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP Sbjct 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG Sbjct 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA Sbjct 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 Query 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE Sbjct 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 Query 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT Sbjct 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 Query 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 463 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS Sbjct 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 463 >gi|326903456|gb|EGE50389.1| NADH dehydrogenase ndh [Mycobacterium tuberculosis W-148] Length=463 Score = 936 bits (2418), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/463 (99%), Positives = 462/463 (99%), Gaps = 0/463 (0%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT Sbjct 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG Sbjct 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP Sbjct 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVEMAGQIAELAEHTLKGAFRHIDSTK RVILLDAAPAVLPPMGAKLGQRAAARLQKLG Sbjct 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKVRVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA Sbjct 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 Query 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE Sbjct 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 Query 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT Sbjct 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 Query 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 463 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS Sbjct 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 463 >gi|306779853|ref|ZP_07418190.1| NADH dehydrogenase ndh [Mycobacterium tuberculosis SUMu002] gi|306788958|ref|ZP_07427280.1| NADH dehydrogenase ndh [Mycobacterium tuberculosis SUMu004] gi|306793294|ref|ZP_07431596.1| NADH dehydrogenase ndh [Mycobacterium tuberculosis SUMu005] 11 more sequence titles Length=463 Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/463 (99%), Positives = 462/463 (99%), Gaps = 0/463 (0%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 MSPQQEPTAQPPRRHRV IIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT Sbjct 1 MSPQQEPTAQPPRRHRVAIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG Sbjct 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP Sbjct 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG Sbjct 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA Sbjct 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 Query 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE Sbjct 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 Query 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT Sbjct 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 Query 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 463 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS Sbjct 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 463 >gi|340626862|ref|YP_004745314.1| putative NADH dehydrogenase NDH [Mycobacterium canettii CIPT 140010059] gi|340005052|emb|CCC44201.1| putative NADH dehydrogenase NDH [Mycobacterium canettii CIPT 140010059] Length=463 Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/463 (99%), Positives = 462/463 (99%), Gaps = 0/463 (0%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT Sbjct 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG Sbjct 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP Sbjct 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLG RAAARLQKLG Sbjct 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGHRAAARLQKLG 240 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA Sbjct 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 Query 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE Sbjct 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 Query 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT Sbjct 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 Query 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 463 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS Sbjct 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 463 >gi|121637757|ref|YP_977980.1| putative NADH dehydrogenase ndh [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990241|ref|YP_002644928.1| putative NADH dehydrogenase [Mycobacterium bovis BCG str. Tokyo 172] gi|121493404|emb|CAL71877.1| Probable NADH dehydrogenase ndh [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773354|dbj|BAH26160.1| putative NADH dehydrogenase [Mycobacterium bovis BCG str. Tokyo 172] gi|341601784|emb|CCC64458.1| probable NADH dehydrogenase ndh [Mycobacterium bovis BCG str. Moreau RDJ] Length=463 Score = 934 bits (2414), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/463 (99%), Positives = 462/463 (99%), Gaps = 0/463 (0%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT Sbjct 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG Sbjct 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP Sbjct 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG Sbjct 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA Sbjct 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 Query 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 GRVQVLPDLSIP YPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE Sbjct 301 GRVQVLPDLSIPRYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 Query 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT Sbjct 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 Query 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 463 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS Sbjct 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 463 >gi|31793044|ref|NP_855537.1| NADH dehydrogenase [Mycobacterium bovis AF2122/97] gi|31618635|emb|CAD94588.1| PROBABLE NADH DEHYDROGENASE NDH [Mycobacterium bovis AF2122/97] Length=463 Score = 933 bits (2412), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/463 (99%), Positives = 462/463 (99%), Gaps = 0/463 (0%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT Sbjct 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG Sbjct 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP Sbjct 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG Sbjct 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSAS LGRDLAEQSRVELDRA Sbjct 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASWLGRDLAEQSRVELDRA 300 Query 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE Sbjct 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 Query 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT Sbjct 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 Query 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 463 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS Sbjct 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 463 >gi|306784596|ref|ZP_07422918.1| NADH dehydrogenase ndh [Mycobacterium tuberculosis SUMu003] gi|308330640|gb|EFP19491.1| NADH dehydrogenase ndh [Mycobacterium tuberculosis SUMu003] Length=462 Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/463 (99%), Positives = 461/463 (99%), Gaps = 1/463 (0%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 MSPQQEPTAQPPRRHRV IIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT Sbjct 1 MSPQQEPTAQPPRRHRVAIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG Sbjct 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP Sbjct 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG Sbjct 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 VEIQLGAMVTDVDRNGITVKDSDG +RRIESACKVWSAGVSASRLGRDLAEQSRVELDRA Sbjct 241 VEIQLGAMVTDVDRNGITVKDSDG-IRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 299 Query 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE Sbjct 300 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 359 Query 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT Sbjct 360 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 419 Query 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 463 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS Sbjct 420 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 462 >gi|167970333|ref|ZP_02552610.1| NADH dehydrogenase ndh [Mycobacterium tuberculosis H37Ra] gi|254550864|ref|ZP_05141311.1| NADH dehydrogenase ndh [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|294996762|ref|ZP_06802453.1| NADH dehydrogenase ndh [Mycobacterium tuberculosis 210] gi|297634414|ref|ZP_06952194.1| NADH dehydrogenase ndh [Mycobacterium tuberculosis KZN 4207] gi|297731401|ref|ZP_06960519.1| NADH dehydrogenase ndh [Mycobacterium tuberculosis KZN R506] gi|313658735|ref|ZP_07815615.1| NADH dehydrogenase ndh [Mycobacterium tuberculosis KZN V2475] gi|339298416|gb|AEJ50526.1| NADH dehydrogenase [Mycobacterium tuberculosis CCDC5180] Length=446 Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/446 (99%), Positives = 446/446 (100%), Gaps = 0/446 (0%) Query 18 VIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTRVVLR 77 +IIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTRVVLR Sbjct 1 MIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTRVVLR 60 Query 78 KQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFAEFAPG 137 KQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFAEFAPG Sbjct 61 KQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFAEFAPG 120 Query 138 MKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAELAEHTL 197 MKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAELAEHTL Sbjct 121 MKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAELAEHTL 180 Query 198 KGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDVDRNGI 257 KGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDVDRNGI Sbjct 181 KGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDVDRNGI 240 Query 258 TVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSIPGYPNV 317 TVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSIPGYPNV Sbjct 241 TVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSIPGYPNV 300 Query 318 FVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDKGSMATVSRFS 377 FVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDKGSMATVSRFS Sbjct 301 FVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDKGSMATVSRFS 360 Query 378 AVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTITDQQAF 437 AVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTITDQQAF Sbjct 361 AVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTITDQQAF 420 Query 438 ARTRLEQLAELAAEAQGSAASAKVAS 463 ARTRLEQLAELAAEAQGSAASAKVAS Sbjct 421 ARTRLEQLAELAAEAQGSAASAKVAS 446 >gi|118618416|ref|YP_906748.1| NADH dehydrogenase Ndh [Mycobacterium ulcerans Agy99] gi|183982734|ref|YP_001851025.1| NADH dehydrogenase Ndh [Mycobacterium marinum M] gi|118570526|gb|ABL05277.1| NADH dehydrogenase Ndh [Mycobacterium ulcerans Agy99] gi|183176060|gb|ACC41170.1| NADH dehydrogenase Ndh [Mycobacterium marinum M] Length=461 Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/457 (92%), Positives = 437/457 (96%), Gaps = 0/457 (0%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 MSPQ E TAQ RHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT Sbjct 1 MSPQPETTAQARPRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GIISEG+IAPPTRVVLR+QRN QVLLGNVTHIDLA Q VVS+LLGHTY+TPYD+LIVAAG Sbjct 61 GIISEGDIAPPTRVVLRRQRNAQVLLGNVTHIDLAKQSVVSDLLGHTYETPYDTLIVAAG 120 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERS D ERRAKLLTFTVVGAGP Sbjct 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSRDAERRAKLLTFTVVGAGP 180 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVEMAGQIAELAEHTLKGAFRHIDST+ARVILLDAAPAVLPP G KLG+RAAARLQKLG Sbjct 181 TGVEMAGQIAELAEHTLKGAFRHIDSTRARVILLDAAPAVLPPFGDKLGERAAARLQKLG 240 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 VEIQLGAMVTDVDRNGITVKDSDGT+RRIESACKVWSAGV ASRLGRDLAEQS VELDRA Sbjct 241 VEIQLGAMVTDVDRNGITVKDSDGTIRRIESACKVWSAGVQASRLGRDLAEQSEVELDRA 300 Query 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 GRVQVLPDLS+PG+PNVFV+GDMAAVEGVPGVAQGAIQGAKYVA+TIK+ELAGAN AERE Sbjct 301 GRVQVLPDLSVPGHPNVFVIGDMAAVEGVPGVAQGAIQGAKYVATTIKSELAGANAAERE 360 Query 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 PFQYFDKGSMATVSRFSAVAKIGPVE SGFIAWL WLVLHL YL+GFKTK++TLLSWTVT Sbjct 361 PFQYFDKGSMATVSRFSAVAKIGPVEISGFIAWLAWLVLHLVYLVGFKTKVSTLLSWTVT 420 Query 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAA 457 FLSTRRGQLTIT+QQAFARTRLEQLAELA+EAQ + A Sbjct 421 FLSTRRGQLTITEQQAFARTRLEQLAELASEAQSTEA 457 >gi|15828111|ref|NP_302374.1| dehydrogenase [Mycobacterium leprae TN] gi|221230588|ref|YP_002504004.1| putative dehydrogenase [Mycobacterium leprae Br4923] gi|2578371|emb|CAA15447.1| dehydrogenase [Mycobacterium leprae] gi|13093665|emb|CAC31016.1| possible dehydrogenase [Mycobacterium leprae] gi|219933695|emb|CAR72158.1| possible dehydrogenase [Mycobacterium leprae Br4923] Length=466 Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/460 (91%), Positives = 436/460 (95%), Gaps = 0/460 (0%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 M+ Q TA RRH+VVIIGSGFGGLNAAKKLKRA+VDIKLIARTTHHLFQPLLYQVAT Sbjct 1 MNAQPAATAAQDRRHQVVIIGSGFGGLNAAKKLKRANVDIKLIARTTHHLFQPLLYQVAT 60 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GIISEGEIAPPTRVVLRKQRN+QVLLGNVTHIDLA QCVVSELLGHTY+T YDSLIVAAG Sbjct 61 GIISEGEIAPPTRVVLRKQRNIQVLLGNVTHIDLANQCVVSELLGHTYETLYDSLIVAAG 120 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 AGQSYFGND FAEFAPGMKSIDDALELRGRILSAFEQAERS+DPERR KLLTFTVVGAGP Sbjct 121 AGQSYFGNDQFAEFAPGMKSIDDALELRGRILSAFEQAERSNDPERREKLLTFTVVGAGP 180 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVEMAGQIAELA+HTLKGAFR IDSTKARV+LLDAAPAVLPPMG KLGQRAAARLQK+G Sbjct 181 TGVEMAGQIAELADHTLKGAFRRIDSTKARVVLLDAAPAVLPPMGEKLGQRAAARLQKMG 240 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 VEIQL AMVTDVDRNGITV+DSDGTVRRIESACKVWSAGVSASRLGRDLAEQS VELD A Sbjct 241 VEIQLSAMVTDVDRNGITVQDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSLVELDWA 300 Query 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 GRV+VLPDLSIPGY NVFVVGDMAA++GVPGVAQGAIQGAKYVA+ IKAEL ANPAERE Sbjct 301 GRVKVLPDLSIPGYRNVFVVGDMAAIDGVPGVAQGAIQGAKYVANNIKAELGEANPAERE 360 Query 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 PFQYFDKGSMATVSRFSAVAKIGP+EFSGFIAWL+WLVLHL YLIGFKTKITTLLSWTVT Sbjct 361 PFQYFDKGSMATVSRFSAVAKIGPLEFSGFIAWLMWLVLHLMYLIGFKTKITTLLSWTVT 420 Query 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAK 460 FLSTRRGQLTIT+QQAFARTRLEQLAEL AE+Q +AA+ + Sbjct 421 FLSTRRGQLTITEQQAFARTRLEQLAELTAESQSTAAANR 460 >gi|240172037|ref|ZP_04750696.1| DoxD family protein/pyridine nucleotide-disulfide oxidoreductase [Mycobacterium kansasii ATCC 12478] Length=461 Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/457 (90%), Positives = 434/457 (95%), Gaps = 0/457 (0%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 MSPQ +PTA+ RRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT Sbjct 1 MSPQPDPTAETRRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GI+SEG+IAPPTRVVLR+QRNVQVLLG+VTHIDLAGQ VVS+LLGHTY+TPYDSLIVAAG Sbjct 61 GIVSEGDIAPPTRVVLRRQRNVQVLLGDVTHIDLAGQFVVSDLLGHTYETPYDSLIVAAG 120 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 AGQSYFGNDHFAEFAPGMKSIDDALE+RGRILSAFEQAERS DPERRAKLLTFTV+GAGP Sbjct 121 AGQSYFGNDHFAEFAPGMKSIDDALEVRGRILSAFEQAERSRDPERRAKLLTFTVIGAGP 180 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVEMAGQIAELA HTLKG+FRHIDST+ARVILLDAAPAVLPP G KLGQRAAARL+K+G Sbjct 181 TGVEMAGQIAELASHTLKGSFRHIDSTRARVILLDAAPAVLPPFGEKLGQRAAARLEKMG 240 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 VEIQLGAMVTDVDRNGITVKDSDGT+RRIES CKVWSAGVSAS LG DLAEQS VELDRA Sbjct 241 VEIQLGAMVTDVDRNGITVKDSDGTIRRIESQCKVWSAGVSASALGHDLAEQSSVELDRA 300 Query 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 GRV+VLPDL+IPG+PNVFV+GDMAAVEGVPGVAQGAIQGAKY A TIKAELAGA+P +RE Sbjct 301 GRVKVLPDLTIPGHPNVFVIGDMAAVEGVPGVAQGAIQGAKYAAGTIKAELAGADPTQRE 360 Query 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 PFQYFDKGSMATVSRFSAVAK+GPVEFSG IAW WLVLHL YL+GFKTK++TLLSWTVT Sbjct 361 PFQYFDKGSMATVSRFSAVAKVGPVEFSGLIAWFAWLVLHLVYLVGFKTKVSTLLSWTVT 420 Query 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAA 457 FLSTRRGQLTIT+QQAFARTRLEQLA LAAEA AA Sbjct 421 FLSTRRGQLTITEQQAFARTRLEQLAVLAAEAHRPAA 457 >gi|342861249|ref|ZP_08717897.1| DoxD family protein/pyridine nucleotide-disulfide oxidoreductase [Mycobacterium colombiense CECT 3035] gi|342131149|gb|EGT84430.1| DoxD family protein/pyridine nucleotide-disulfide oxidoreductase [Mycobacterium colombiense CECT 3035] Length=461 Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/457 (89%), Positives = 433/457 (95%), Gaps = 0/457 (0%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 MSPQ TA P RRH+VVIIGSGFGGLNAAKKLK A+VDIKLIARTTHHLFQPLLYQVAT Sbjct 1 MSPQPGTTAGPERRHQVVIIGSGFGGLNAAKKLKHANVDIKLIARTTHHLFQPLLYQVAT 60 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GI+SEG+IAPPTRVVLR+QRNVQVLLG+VTHIDL G+ VVS+LLGHTY TPYDSLI+AAG Sbjct 61 GIVSEGDIAPPTRVVLRRQRNVQVLLGDVTHIDLEGKFVVSDLLGHTYDTPYDSLIIAAG 120 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 AGQSYFGNDHFAEFAPGMKSIDDALE+RGRILSAFEQAERS DPERRAKLLTFTV+GAGP Sbjct 121 AGQSYFGNDHFAEFAPGMKSIDDALEVRGRILSAFEQAERSRDPERRAKLLTFTVIGAGP 180 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVEMAGQIAELA +TLKG+FRHIDSTKARVILLDAAPAVLPP G KLGQRAAARL+K+G Sbjct 181 TGVEMAGQIAELATYTLKGSFRHIDSTKARVILLDAAPAVLPPFGEKLGQRAAARLEKMG 240 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSAS LGRDLA+QS VELDRA Sbjct 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASPLGRDLADQSSVELDRA 300 Query 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 GRV+VLPDLS+PG+PNVFV+GD+AAVEGVPGVAQGAIQGAKYVASTIKAEL GANPA+RE Sbjct 301 GRVKVLPDLSVPGHPNVFVIGDLAAVEGVPGVAQGAIQGAKYVASTIKAELGGANPADRE 360 Query 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 PFQYFDKGSMATVSRFSAVAKIGPVEFSG AW WLVLHL YL+GFKTKI+TLLSWTVT Sbjct 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGLFAWFAWLVLHLVYLVGFKTKISTLLSWTVT 420 Query 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAA 457 FLSTRRGQLTIT+QQAFARTRLEQLA +AAEA+ AA Sbjct 421 FLSTRRGQLTITEQQAFARTRLEQLAVVAAEAKRPAA 457 >gi|254821981|ref|ZP_05226982.1| DoxD family protein/pyridine nucleotide-disulfide oxidoreductase [Mycobacterium intracellulare ATCC 13950] Length=461 Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/453 (90%), Positives = 430/453 (95%), Gaps = 0/453 (0%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 MSPQ A P RRH+VVIIGSGFGGLNAAKKLK A+VDIKLIARTTHHLFQPLLYQVAT Sbjct 1 MSPQPSNAAGPERRHQVVIIGSGFGGLNAAKKLKHANVDIKLIARTTHHLFQPLLYQVAT 60 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GI+SEG+IAPPTRVVLR+QRNVQVLLG+VTHIDLAG+ VVS+LLGHTY+TPYDSLIVAAG Sbjct 61 GIVSEGDIAPPTRVVLRRQRNVQVLLGDVTHIDLAGKFVVSDLLGHTYETPYDSLIVAAG 120 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 AGQSYFGNDHFAEFAPGMKSIDDALE+RGRILSAFEQAERS DPERRAKLLTFTV+GAGP Sbjct 121 AGQSYFGNDHFAEFAPGMKSIDDALEVRGRILSAFEQAERSRDPERRAKLLTFTVIGAGP 180 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVEMAGQIAELA +TLKG+FRHIDSTKARVILLDAAPAVLPP G KLGQRAA RL+K+G Sbjct 181 TGVEMAGQIAELATYTLKGSFRHIDSTKARVILLDAAPAVLPPFGDKLGQRAADRLEKMG 240 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSAS LGRDLA+QS VELDRA Sbjct 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASPLGRDLADQSTVELDRA 300 Query 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 GRV+VLPDLS+PG+P+VFV+GD+AAVEGVPGVAQGAIQGAKYVASTIKAEL GANPAERE Sbjct 301 GRVKVLPDLSVPGHPDVFVIGDLAAVEGVPGVAQGAIQGAKYVASTIKAELDGANPAERE 360 Query 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 PFQYFDKGSMATVSRFSAVAKIGPVEFSG AW WLVLHL YL+GFKTKI+TLLSWTVT Sbjct 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGLFAWFAWLVLHLVYLVGFKTKISTLLSWTVT 420 Query 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQ 453 FLSTRRGQLTIT+QQAFARTRLEQLA LAAE + Sbjct 421 FLSTRRGQLTITEQQAFARTRLEQLAVLAAETK 453 >gi|41407659|ref|NP_960495.1| hypothetical protein MAP1561c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118463906|ref|YP_882053.1| DoxD family protein/pyridine nucleotide-disulfide oxidoreductase [Mycobacterium avium 104] gi|41396012|gb|AAS03878.1| Ndh [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165193|gb|ABK66090.1| DoxD family protein/pyridine nucleotide-disulfide oxidoreductase [Mycobacterium avium 104] gi|336457609|gb|EGO36614.1| NADH dehydrogenase, FAD-containing subunit [Mycobacterium avium subsp. paratuberculosis S397] Length=461 Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/457 (88%), Positives = 431/457 (95%), Gaps = 0/457 (0%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 MSP TA P RRH+VVIIGSGFGGLNAAKKLK A+VDIKLIARTTHHLFQPLLYQVAT Sbjct 1 MSPHSGSTAGPERRHQVVIIGSGFGGLNAAKKLKHANVDIKLIARTTHHLFQPLLYQVAT 60 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GI+SEG+IAPPTRVVLR+QRNVQVLLG+VTHIDLAG+ VVS+LLGHTY+TPYD+LIVAAG Sbjct 61 GIVSEGDIAPPTRVVLRRQRNVQVLLGDVTHIDLAGKFVVSDLLGHTYETPYDTLIVAAG 120 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 AGQSYFGNDHFAEFAPGMKSIDDALE+RGRILSAFEQAERS DPERRAKLLTFTV+GAGP Sbjct 121 AGQSYFGNDHFAEFAPGMKSIDDALEVRGRILSAFEQAERSRDPERRAKLLTFTVIGAGP 180 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVEMAGQIAELA +TLKG+FRHID TKARVILLDAAPAVLPP G KLG+RAA RL+K+G Sbjct 181 TGVEMAGQIAELATYTLKGSFRHIDPTKARVILLDAAPAVLPPFGDKLGKRAADRLEKMG 240 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSAS LGRDLAEQS VELDRA Sbjct 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASPLGRDLAEQSTVELDRA 300 Query 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 GRV+VLPDLSIPG+PNVFV+GD+AAVEGVPGVAQGAIQGAKYVA+TIKAEL GA+PAERE Sbjct 301 GRVKVLPDLSIPGHPNVFVIGDLAAVEGVPGVAQGAIQGAKYVANTIKAELGGADPAERE 360 Query 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 PFQYFDKGSMATVSRFSAVAKIGP+EFSG AW WLVLHL YL+GFKTK++TLLSWTVT Sbjct 361 PFQYFDKGSMATVSRFSAVAKIGPLEFSGLFAWFAWLVLHLVYLVGFKTKVSTLLSWTVT 420 Query 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAA 457 FLSTRRGQLTIT+QQAFARTRLEQLA LAAE + AA Sbjct 421 FLSTRRGQLTITEQQAFARTRLEQLAVLAAETKRPAA 457 >gi|254775343|ref|ZP_05216859.1| DoxD family protein/pyridine nucleotide-disulfide oxidoreductase [Mycobacterium avium subsp. avium ATCC 25291] Length=461 Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/457 (88%), Positives = 430/457 (95%), Gaps = 0/457 (0%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 MSP TA P RRH+VVIIGSGFGGLNAAKKLK A+VDIKLIARTTHHLFQPLLYQVAT Sbjct 1 MSPHSGSTAGPERRHQVVIIGSGFGGLNAAKKLKHANVDIKLIARTTHHLFQPLLYQVAT 60 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GI+SEG+IAPPTRVVLR+QRNVQVLLG+VTHIDLAG+ VVS+LLGHTY+TPYD+LIVAAG Sbjct 61 GIVSEGDIAPPTRVVLRRQRNVQVLLGDVTHIDLAGKFVVSDLLGHTYETPYDTLIVAAG 120 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 AGQSYFGNDHFAEFAPGMKSIDDALE+RGRILSAFEQAERS DPERRAKLLTFTV+GAGP Sbjct 121 AGQSYFGNDHFAEFAPGMKSIDDALEVRGRILSAFEQAERSRDPERRAKLLTFTVIGAGP 180 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVEMAGQIAELA +TLKG+FRHID TKARVILLDAAPAVLPP G KLG+RAA RL+K+G Sbjct 181 TGVEMAGQIAELATYTLKGSFRHIDPTKARVILLDAAPAVLPPFGDKLGKRAADRLEKMG 240 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSAS LGRDLAEQS VELDRA Sbjct 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASPLGRDLAEQSTVELDRA 300 Query 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 GRV+VLPDLSIPG+PNVFV+GD+AAVEGVPGVAQGAIQGAKYVA+TIKAEL GA+PAERE Sbjct 301 GRVKVLPDLSIPGHPNVFVIGDLAAVEGVPGVAQGAIQGAKYVANTIKAELGGADPAERE 360 Query 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 PFQYFDKGSMATVSRFSA AKIGP+EFSG AW WLVLHL YL+GFKTK++TLLSWTVT Sbjct 361 PFQYFDKGSMATVSRFSAAAKIGPLEFSGLFAWFAWLVLHLVYLVGFKTKVSTLLSWTVT 420 Query 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAA 457 FLSTRRGQLTIT+QQAFARTRLEQLA LAAE + AA Sbjct 421 FLSTRRGQLTITEQQAFARTRLEQLAVLAAETKRPAA 457 >gi|296164844|ref|ZP_06847402.1| NADH dehydrogenase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899810|gb|EFG79258.1| NADH dehydrogenase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=446 Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/432 (90%), Positives = 414/432 (96%), Gaps = 0/432 (0%) Query 17 VVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTRVVL 76 +VIIGSGFGGLNAAKKLK ADVDIKLIARTTHHLFQPLLYQVATGI+SEG+IAPPTRVVL Sbjct 1 MVIIGSGFGGLNAAKKLKHADVDIKLIARTTHHLFQPLLYQVATGIVSEGDIAPPTRVVL 60 Query 77 RKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFAEFAP 136 R+QRNVQVLLG+VTHIDLA + VVS+LLGHTY+TPYDSLI+AAGAGQSYFGNDHFAEFAP Sbjct 61 RRQRNVQVLLGDVTHIDLARKFVVSDLLGHTYETPYDSLIIAAGAGQSYFGNDHFAEFAP 120 Query 137 GMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAELAEHT 196 GMKSIDDALE+RGRILSAFEQAERS DPERRAKLLTFTV+GAGPTGVEMAGQIAELA HT Sbjct 121 GMKSIDDALEVRGRILSAFEQAERSRDPERRAKLLTFTVIGAGPTGVEMAGQIAELAAHT 180 Query 197 LKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDVDRNG 256 LKG+FR IDSTKARVILLDAAPAVLPP G KLG RA ARL+K+GVEIQLGAMVTDVDRNG Sbjct 181 LKGSFRGIDSTKARVILLDAAPAVLPPFGEKLGDRARARLEKMGVEIQLGAMVTDVDRNG 240 Query 257 ITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSIPGYPN 316 ITVKDSDGTVRRIESACKVWSAGV AS LGRDLAEQS VELDRAGRV+VLPDLS+PG+PN Sbjct 241 ITVKDSDGTVRRIESACKVWSAGVQASGLGRDLAEQSSVELDRAGRVKVLPDLSVPGHPN 300 Query 317 VFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDKGSMATVSRF 376 VFV+GDMAAVEGVPGVAQGAIQGAKYVA IKAEL GA+PAEREPFQYFDKGSMATVSRF Sbjct 301 VFVIGDMAAVEGVPGVAQGAIQGAKYVAGMIKAELGGADPAEREPFQYFDKGSMATVSRF 360 Query 377 SAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTITDQQA 436 SAVAK+GP+EFSGFIAWL+WLVLHL YL+GFKTK++TLLSWTVTFLSTRRGQLTIT+QQA Sbjct 361 SAVAKVGPLEFSGFIAWLMWLVLHLVYLVGFKTKVSTLLSWTVTFLSTRRGQLTITEQQA 420 Query 437 FARTRLEQLAEL 448 FARTRLEQLA L Sbjct 421 FARTRLEQLAVL 432 >gi|333990583|ref|YP_004523197.1| NADH dehydrogenase Ndh [Mycobacterium sp. JDM601] gi|333486551|gb|AEF35943.1| NADH dehydrogenase Ndh [Mycobacterium sp. JDM601] Length=461 Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/459 (86%), Positives = 420/459 (92%), Gaps = 0/459 (0%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 MS Q E TA RRH+VVIIGSGFGGL AAKKLKRADVD+KLIARTTHHLFQPLLYQVAT Sbjct 1 MSAQPEVTAPQRRRHQVVIIGSGFGGLTAAKKLKRADVDVKLIARTTHHLFQPLLYQVAT 60 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GI+SEGEIAP TRVVLRKQRN QVLLG+VTHIDLAG+ V SE+LGHTY TP+DSLI+AAG Sbjct 61 GILSEGEIAPSTRVVLRKQRNAQVLLGDVTHIDLAGKYVTSEVLGHTYDTPFDSLIIAAG 120 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 AGQSYFGND FAEFAPGMK+IDDALELRGRILSAFEQAERS D RR KLLTFTVVGAGP Sbjct 121 AGQSYFGNDQFAEFAPGMKTIDDALELRGRILSAFEQAERSRDQARREKLLTFTVVGAGP 180 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVEMAGQIAELA +TLKGAFR+IDSTKARVILLDAAPAVLPPMG KLG +AA RLQK+G Sbjct 181 TGVEMAGQIAELANYTLKGAFRNIDSTKARVILLDAAPAVLPPMGEKLGLKAAERLQKMG 240 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 VEIQLGAMVTDVDRNG+TVKDSDGT+RRIES CKVWSAGVSAS LGRDLAEQS VELDRA Sbjct 241 VEIQLGAMVTDVDRNGLTVKDSDGTIRRIESQCKVWSAGVSASPLGRDLAEQSAVELDRA 300 Query 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAERE 360 GRV+VLPDLS+PG+PNVFVVGDMAAV+GVPG+AQGAIQGAK+ ASTIKAEL GA+PA+RE Sbjct 301 GRVKVLPDLSVPGHPNVFVVGDMAAVDGVPGMAQGAIQGAKHAASTIKAELGGADPADRE 360 Query 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 PFQY DKGSMATVSRFSAV KIGP+EFSGF+AWL WL LHL YL+GFK K++TLLSW VT Sbjct 361 PFQYLDKGSMATVSRFSAVTKIGPLEFSGFLAWLAWLGLHLIYLVGFKNKVSTLLSWNVT 420 Query 421 FLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASA 459 FLSTRRGQLTIT+QQAFARTRLEQL LAAEAQ A A Sbjct 421 FLSTRRGQLTITEQQAFARTRLEQLEVLAAEAQRGAERA 459 >gi|120404057|ref|YP_953886.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Mycobacterium vanbaalenii PYR-1] gi|119956875|gb|ABM13880.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Mycobacterium vanbaalenii PYR-1] Length=457 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/448 (85%), Positives = 406/448 (91%), Gaps = 0/448 (0%) Query 6 EPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISE 65 P A P RH+VVIIGSGFGGL AAK LKRADVDIKLIARTTHHLFQPLLYQVATGIISE Sbjct 3 HPGATPSDRHKVVIIGSGFGGLTAAKTLKRADVDIKLIARTTHHLFQPLLYQVATGIISE 62 Query 66 GEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSY 125 GEIAP TRV+LR Q+N QVLLG+VT IDL + V SELLGHTY TP+DSLIVAAGAGQSY Sbjct 63 GEIAPATRVILRNQKNAQVLLGDVTGIDLQTKTVRSELLGHTYVTPFDSLIVAAGAGQSY 122 Query 126 FGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEM 185 FGNDHFAE+APGMKSIDDALELRGRIL AFEQAERSSDP RR KLLTF VVGAGPTGVEM Sbjct 123 FGNDHFAEWAPGMKSIDDALELRGRILGAFEQAERSSDPARREKLLTFVVVGAGPTGVEM 182 Query 186 AGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQL 245 AGQIAELA+HTLKGAFRHIDSTKARVILLDAAPAVLPPMG KLG++A ARL+KLGVEIQL Sbjct 183 AGQIAELADHTLKGAFRHIDSTKARVILLDAAPAVLPPMGEKLGKKAQARLEKLGVEIQL 242 Query 246 GAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQV 305 AMVTDVDRNGITVKD DGT+RRIE+ACKVWSAGVSAS LGRDLAE S VELDRAGRV+V Sbjct 243 NAMVTDVDRNGITVKDPDGTIRRIEAACKVWSAGVSASPLGRDLAEGSGVELDRAGRVKV 302 Query 306 LPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYF 365 LPDLS+PG+PNVFVVGDMAAVEGVPG+AQGAIQG KY A I A L GA+P EREPF+YF Sbjct 303 LPDLSLPGHPNVFVVGDMAAVEGVPGMAQGAIQGGKYAAKAIAAGLKGADPTEREPFKYF 362 Query 366 DKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTR 425 DKGSMATVSRFSAVAKIGP+EF GF+AWL WLVLHL YL+GFKTKI TLLSWTVTFLST+ Sbjct 363 DKGSMATVSRFSAVAKIGPLEFEGFVAWLAWLVLHLVYLVGFKTKIVTLLSWTVTFLSTK 422 Query 426 RGQLTITDQQAFARTRLEQLAELAAEAQ 453 RGQLTIT+QQA+ARTR+E+L E+AA Q Sbjct 423 RGQLTITEQQAYARTRIEELEEIAASVQ 450 >gi|126435408|ref|YP_001071099.1| NADH dehydrogenase [Mycobacterium sp. JLS] gi|126235208|gb|ABN98608.1| NADH dehydrogenase [Mycobacterium sp. JLS] Length=461 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/445 (84%), Positives = 405/445 (92%), Gaps = 0/445 (0%) Query 6 EPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISE 65 P A P RH+VVIIGSGFGGL+AAK LKRADVDIKLIARTTHHLFQPLLYQVATGIISE Sbjct 3 HPGATPTDRHKVVIIGSGFGGLSAAKTLKRADVDIKLIARTTHHLFQPLLYQVATGIISE 62 Query 66 GEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSY 125 GEIAP TRVVLRKQ+NVQVLLG+VTH+DL + V SELLGH Y TPYDSL++AAGAGQSY Sbjct 63 GEIAPATRVVLRKQKNVQVLLGDVTHVDLQNRLVHSELLGHDYATPYDSLVIAAGAGQSY 122 Query 126 FGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEM 185 FGNDHFAE+APGMKSIDDALELRGRIL AFEQAERSSDP+RR KLLTF VVGAGPTGVEM Sbjct 123 FGNDHFAEWAPGMKSIDDALELRGRILGAFEQAERSSDPKRREKLLTFVVVGAGPTGVEM 182 Query 186 AGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQL 245 AGQIAELA++TLKG FRHID T ARVILLDAAPAVLPPMG KLG+RAAARL+K+GVEIQL Sbjct 183 AGQIAELADYTLKGTFRHIDPTSARVILLDAAPAVLPPMGEKLGKRAAARLEKMGVEIQL 242 Query 246 GAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQV 305 AMVTDVDRNGITVKD DG +RRIESACKVWSAGVSAS LGRDLA Q VE+DRAGRV+V Sbjct 243 NAMVTDVDRNGITVKDPDGKLRRIESACKVWSAGVSASPLGRDLANQCDVEVDRAGRVKV 302 Query 306 LPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYF 365 LPDLSIPG+PNVFVVGDMAAVEGVPG AQGAIQGA+Y A IK E+ GANPA R+PF+YF Sbjct 303 LPDLSIPGHPNVFVVGDMAAVEGVPGQAQGAIQGARYAAKLIKNEVKGANPAFRQPFEYF 362 Query 366 DKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTR 425 DKGSMATVSRFSAVAK+GP+EF GFIAWL WL LHL YL+GFKTKI TL+SWTVTFLST+ Sbjct 363 DKGSMATVSRFSAVAKVGPLEFGGFIAWLAWLALHLVYLVGFKTKIVTLISWTVTFLSTK 422 Query 426 RGQLTITDQQAFARTRLEQLAELAA 450 RGQLTIT+QQA+ARTR+E+L E+AA Sbjct 423 RGQLTITEQQAYARTRIEELEEIAA 447 >gi|108799767|ref|YP_639964.1| NADH dehydrogenase [Mycobacterium sp. MCS] gi|119868877|ref|YP_938829.1| NADH dehydrogenase [Mycobacterium sp. KMS] gi|108770186|gb|ABG08908.1| NADH dehydrogenase [Mycobacterium sp. MCS] gi|119694966|gb|ABL92039.1| NADH dehydrogenase [Mycobacterium sp. KMS] Length=461 Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/445 (84%), Positives = 405/445 (92%), Gaps = 0/445 (0%) Query 6 EPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISE 65 P A P RH+VVIIGSGFGGL+AAK LKRADVDIKLIARTTHHLFQPLLYQVATGIISE Sbjct 3 HPGATPTDRHKVVIIGSGFGGLSAAKTLKRADVDIKLIARTTHHLFQPLLYQVATGIISE 62 Query 66 GEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSY 125 GEIAP TRVVLRKQ+NVQVLLG+VTH+DL + V SELLGH Y TPYDSL++AAGAGQSY Sbjct 63 GEIAPATRVVLRKQKNVQVLLGDVTHVDLQNRLVHSELLGHDYATPYDSLVIAAGAGQSY 122 Query 126 FGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEM 185 FGNDHFAE+APGMKSIDDALELRGRIL AFEQAERSSDP+RR KLLTF VVGAGPTGVEM Sbjct 123 FGNDHFAEWAPGMKSIDDALELRGRILGAFEQAERSSDPKRREKLLTFVVVGAGPTGVEM 182 Query 186 AGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQL 245 AGQIAELA++TLKG FRHID T ARVILLDAAPAVLPPMG KLG++AAARL+K+GVEIQL Sbjct 183 AGQIAELADYTLKGTFRHIDPTSARVILLDAAPAVLPPMGEKLGKKAAARLEKMGVEIQL 242 Query 246 GAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQV 305 AMVTDVDRNGITVKD DG +RRIESACKVWSAGVSAS LGRDLA Q VE+DRAGRV+V Sbjct 243 NAMVTDVDRNGITVKDPDGKLRRIESACKVWSAGVSASPLGRDLANQCDVEVDRAGRVKV 302 Query 306 LPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYF 365 LPDLSIPG+PNVFVVGDMAAVEGVPG AQGAIQGA+Y A IK E+ GANPA R+PF+YF Sbjct 303 LPDLSIPGHPNVFVVGDMAAVEGVPGQAQGAIQGARYAAKLIKNEVKGANPAFRQPFEYF 362 Query 366 DKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTR 425 DKGSMATVSRFSAVAK+GP+EF GFIAWL WL LHL YL+GFKTKI TL+SWTVTFLST+ Sbjct 363 DKGSMATVSRFSAVAKVGPLEFGGFIAWLAWLALHLVYLVGFKTKIVTLISWTVTFLSTK 422 Query 426 RGQLTITDQQAFARTRLEQLAELAA 450 RGQLTIT+QQA+ARTR+E+L E+AA Sbjct 423 RGQLTITEQQAYARTRIEELEEIAA 447 >gi|118469404|ref|YP_887924.1| NADH dehydrogenase [Mycobacterium smegmatis str. MC2 155] gi|2708705|gb|AAC46302.1| NADH dehydrogenase [Mycobacterium smegmatis str. MC2 155] gi|118170691|gb|ABK71587.1| NADH dehydrogenase [Mycobacterium smegmatis str. MC2 155] Length=457 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/454 (82%), Positives = 409/454 (91%), Gaps = 0/454 (0%) Query 6 EPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISE 65 P A RH+VVIIGSGFGGL AAK LKRADVD+KLIARTTHHLFQPLLYQVATGIISE Sbjct 3 HPGATASDRHKVVIIGSGFGGLTAAKTLKRADVDVKLIARTTHHLFQPLLYQVATGIISE 62 Query 66 GEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSY 125 GEIAP TRV+LRKQ+N QVLLG+VTHIDL + V S LLGHTY TPYDSLI+AAGAGQSY Sbjct 63 GEIAPATRVILRKQKNAQVLLGDVTHIDLENKTVDSVLLGHTYSTPYDSLIIAAGAGQSY 122 Query 126 FGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEM 185 FGNDHFAEFAPGMKSIDDALELRGRIL AFEQAERSSDP RRAKLLTFTVVGAGPTGVEM Sbjct 123 FGNDHFAEFAPGMKSIDDALELRGRILGAFEQAERSSDPVRRAKLLTFTVVGAGPTGVEM 182 Query 186 AGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQL 245 AGQIAELA+ TL+G+FRHID T+ARVILLDAAPAVLPPMG KLG++A ARL+K+GVE+QL Sbjct 183 AGQIAELADQTLRGSFRHIDPTEARVILLDAAPAVLPPMGEKLGKKARARLEKMGVEVQL 242 Query 246 GAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQV 305 GAMVTDVDRNGITVKDSDGT+RRIESACKVWSAGVSAS LG+DLAEQS VELDRAGRV+V Sbjct 243 GAMVTDVDRNGITVKDSDGTIRRIESACKVWSAGVSASPLGKDLAEQSGVELDRAGRVKV 302 Query 306 LPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYF 365 PDL++PG+PNVFVVGDMAAVEGVPGVAQGAIQG +Y A IK E++G +P R PF+YF Sbjct 303 QPDLTLPGHPNVFVVGDMAAVEGVPGVAQGAIQGGRYAAKIIKREVSGTSPKIRTPFEYF 362 Query 366 DKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTR 425 DKGSMATVSRFSAVAK+GPVEF+GF AWL WLVLHL YL+GFKTKI TLLSW VTFLST+ Sbjct 363 DKGSMATVSRFSAVAKVGPVEFAGFFAWLCWLVLHLVYLVGFKTKIVTLLSWGVTFLSTK 422 Query 426 RGQLTITDQQAFARTRLEQLAELAAEAQGSAASA 459 RGQLTIT+QQA+ARTR+E+L E+AA Q + +A Sbjct 423 RGQLTITEQQAYARTRIEELEEIAAAVQDTEKAA 456 >gi|145223934|ref|YP_001134612.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Mycobacterium gilvum PYR-GCK] gi|315444266|ref|YP_004077145.1| NADH dehydrogenase, FAD-containing subunit [Mycobacterium sp. Spyr1] gi|145216420|gb|ABP45824.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Mycobacterium gilvum PYR-GCK] gi|315262569|gb|ADT99310.1| NADH dehydrogenase, FAD-containing subunit [Mycobacterium sp. Spyr1] Length=457 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/454 (83%), Positives = 405/454 (90%), Gaps = 0/454 (0%) Query 6 EPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISE 65 P A P RH+VVIIGSGFGGL AAK LK+ADVDIK+IARTTHHLFQPLLYQVATGIISE Sbjct 3 HPGATPSDRHKVVIIGSGFGGLTAAKALKKADVDIKMIARTTHHLFQPLLYQVATGIISE 62 Query 66 GEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSY 125 GEIAP TRV+LR Q+N QVLLG+VT IDL V SELLGHTY TP+DSLIVAAGAGQSY Sbjct 63 GEIAPATRVILRNQKNAQVLLGDVTRIDLKTNTVRSELLGHTYITPFDSLIVAAGAGQSY 122 Query 126 FGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEM 185 FGNDHFAE+APGMKSIDDALELRGRIL +FEQAERSSDP RR KLLTF VVGAGPTGVEM Sbjct 123 FGNDHFAEWAPGMKSIDDALELRGRILGSFEQAERSSDPARREKLLTFVVVGAGPTGVEM 182 Query 186 AGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQL 245 AGQIAELA+HTLKGAFRHIDSTKARVILLDAAPAVLPPMG KLG++A RL+K+GVEIQL Sbjct 183 AGQIAELADHTLKGAFRHIDSTKARVILLDAAPAVLPPMGEKLGKQAQKRLEKMGVEIQL 242 Query 246 GAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQV 305 AMVTDVDRNGITVKD DGT+RRIE+ACKVWSAGVSAS LGRDLA+QS VELDRAGRV+V Sbjct 243 NAMVTDVDRNGITVKDPDGTMRRIEAACKVWSAGVSASPLGRDLADQSGVELDRAGRVKV 302 Query 306 LPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYF 365 LPDLSIPG+PNVFVVGDMAAVE VPG+AQGAIQG +Y A I A L GA +EREPF+YF Sbjct 303 LPDLSIPGHPNVFVVGDMAAVEDVPGMAQGAIQGGRYAAKAIAAGLKGAEVSEREPFKYF 362 Query 366 DKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTR 425 DKGSMATVSRFSAVAKIGP+EF GFIAWL WLVLHL YL+GFKTKI TLLSWTVTFLST+ Sbjct 363 DKGSMATVSRFSAVAKIGPLEFGGFIAWLSWLVLHLVYLVGFKTKIVTLLSWTVTFLSTK 422 Query 426 RGQLTITDQQAFARTRLEQLAELAAEAQGSAASA 459 RGQLTIT+QQA+AR RLE+L E+AA Q + +A Sbjct 423 RGQLTITEQQAYARIRLEELEEIAASVQDTEKAA 456 >gi|169629515|ref|YP_001703164.1| NADH dehydrogenase (NDH) [Mycobacterium abscessus ATCC 19977] gi|169241482|emb|CAM62510.1| Probable NADH dehydrogenase (NDH) [Mycobacterium abscessus] Length=484 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/441 (78%), Positives = 381/441 (87%), Gaps = 0/441 (0%) Query 14 RHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTR 73 +HRVVIIGSGFGGL AAK LKRA+ D+ LIARTTHHLFQPLLYQVATGIISEGEIAPPTR Sbjct 29 KHRVVIIGSGFGGLTAAKTLKRANADVTLIARTTHHLFQPLLYQVATGIISEGEIAPPTR 88 Query 74 VVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFAE 133 +L+ Q N QV+LG+VT IDL Q V S LLGH Y TPYDSLIVAAGAGQSYFGNDHFAE Sbjct 89 QILKDQDNAQVVLGDVTSIDLEKQVVHSSLLGHDYSTPYDSLIVAAGAGQSYFGNDHFAE 148 Query 134 FAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAELA 193 +APGMKSIDDALELRGRIL AFEQAERSSDP RR KL+TFTVVGAGPTGVEMAGQIAELA Sbjct 149 WAPGMKSIDDALELRGRILGAFEQAERSSDPVRRRKLMTFTVVGAGPTGVEMAGQIAELA 208 Query 194 EHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDVD 253 TLKG FRHID T ARVILLDAAPAVLPP G KLG +A RL+KLGVEIQL AMVTDVD Sbjct 209 NETLKGTFRHIDPTDARVILLDAAPAVLPPFGPKLGDKARKRLEKLGVEIQLSAMVTDVD 268 Query 254 RNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSIPG 313 RNG+TVK +DG++ RIES CKVWSAGVSAS LG++LAEQS VELDRAGRV+V PDLSIPG Sbjct 269 RNGLTVKHADGSIERIESWCKVWSAGVSASPLGKNLAEQSGVELDRAGRVKVGPDLSIPG 328 Query 314 YPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDKGSMATV 373 +PNVFVVGDM AV+GVPGVAQGAIQG +Y A IKAEL G +PAER PF++FDKGSMATV Sbjct 329 HPNVFVVGDMMAVDGVPGVAQGAIQGGRYAAKQIKAELKGRSPAERAPFKFFDKGSMATV 388 Query 374 SRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTITD 433 SR+SAV KIG +EFSGFIAWL WL LHL YL+GFK ++ TL+ W++ F++ RGQ+ IT+ Sbjct 389 SRYSAVVKIGKIEFSGFIAWLSWLALHLVYLVGFKNRLVTLILWSIAFVTRSRGQMAITE 448 Query 434 QQAFARTRLEQLAELAAEAQG 454 QQA+ARTRL+QL EL AE G Sbjct 449 QQAWARTRLDQLEELVAEKNG 469 >gi|296140013|ref|YP_003647256.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Tsukamurella paurometabola DSM 20162] gi|296028147|gb|ADG78917.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Tsukamurella paurometabola DSM 20162] Length=483 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/433 (72%), Positives = 365/433 (85%), Gaps = 0/433 (0%) Query 13 RRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPT 72 RH+VV+IGSGFGGL K LKRADVD+ +IA+T HHLFQPLLYQVATGI+SEGEIAP + Sbjct 6 HRHKVVVIGSGFGGLFGTKALKRADVDVTVIAKTQHHLFQPLLYQVATGILSEGEIAPAS 65 Query 73 RVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFA 132 RVVLRKQ+N QVLLG VT IDL + V S LL TP+DSLIVAAGA QSYFGND FA Sbjct 66 RVVLRKQKNAQVLLGEVTDIDLENRTVTSHLLDRVTVTPFDSLIVAAGANQSYFGNDRFA 125 Query 133 EFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAEL 192 EFAPGMK+IDDALELRGRIL AFEQAE S D + R +LLTF V+GAGPTGVE+AGQIAE+ Sbjct 126 EFAPGMKTIDDALELRGRILGAFEQAELSHDHDERERLLTFVVIGAGPTGVELAGQIAEM 185 Query 193 AEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDV 252 +++TLKGAFR+ID T+ARVILLDAAPAVLPPMG KLG AA RL+K+GVEIQL AMV DV Sbjct 186 SDNTLKGAFRNIDPTEARVILLDAAPAVLPPMGEKLGNAAADRLRKMGVEIQLNAMVVDV 245 Query 253 DRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSIP 312 D +G+ VK+ DGT RRIE+ CKVWSAGVSAS LG+ +AEQS E+DRAGRV+VLPDL++P Sbjct 246 DADGLVVKEKDGTERRIEAQCKVWSAGVSASPLGKIIAEQSGAEVDRAGRVKVLPDLTVP 305 Query 313 GYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDKGSMAT 372 G PNVFVVGDM AV+GVPG+AQGAIQG+ Y A IKA LAG +PA+R+PF+YFDKGSMAT Sbjct 306 GNPNVFVVGDMMAVDGVPGMAQGAIQGSTYAAKAIKAGLAGQSPADRKPFKYFDKGSMAT 365 Query 373 VSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTIT 432 VSR SAVAK+G +EFSGF AWL WL LHL Y++G++ ++ TL SW VTFL+ +RGQ+TIT Sbjct 366 VSRASAVAKVGKLEFSGFFAWLGWLALHLWYIVGYQNRVITLTSWGVTFLTNKRGQMTIT 425 Query 433 DQQAFARTRLEQL 445 +QQ +ART L+ L Sbjct 426 EQQVYARTALDAL 438 >gi|343928485|ref|ZP_08767933.1| NADH dehydrogenase [Gordonia alkanivorans NBRC 16433] gi|343761670|dbj|GAA14859.1| NADH dehydrogenase [Gordonia alkanivorans NBRC 16433] Length=507 Score = 627 bits (1616), Expect = 2e-177, Method: Compositional matrix adjust. Identities = 310/458 (68%), Positives = 364/458 (80%), Gaps = 9/458 (1%) Query 14 RHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTR 73 R +VVIIGSGFGGL AA++L +ADVD+ LIA+TTHHLFQP+LYQVATGI++EGEIAP TR Sbjct 16 RRKVVIIGSGFGGLFAAQRLAKADVDVTLIAKTTHHLFQPMLYQVATGIVAEGEIAPATR 75 Query 74 VVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFAE 133 VVLRKQ+N VL+G+V IDL + V S LL TPYD LIVAAGA QSYFGNDHFAE Sbjct 76 VVLRKQKNTSVLMGDVFDIDLEAKTVSSRLLERITVTPYDDLIVAAGADQSYFGNDHFAE 135 Query 134 FAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAELA 193 +APGMK+ID ALELRGRIL AFEQAE S DP RAKLLTF VVGAGPTGVE+AGQIAE++ Sbjct 136 YAPGMKTIDHALELRGRILGAFEQAELSHDPAERAKLLTFVVVGAGPTGVELAGQIAEMS 195 Query 194 EHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDVD 253 + TLKGAFR+ID T+ARVILLDAAPAVLPP G KLG +AAARL+K+GVEIQL AMV DVD Sbjct 196 DKTLKGAFRNIDPTEARVILLDAAPAVLPPFGPKLGGKAAARLEKMGVEIQLNAMVVDVD 255 Query 254 RNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSIPG 313 +G+ VK+ DGT RRIES CKVWSAGV AS LG+ LAEQS VELDRAGRV+V PDL+IPG Sbjct 256 YDGLVVKEKDGTTRRIESQCKVWSAGVQASPLGQQLAEQSGVELDRAGRVKVGPDLTIPG 315 Query 314 YPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDKGSMATV 373 +P VFVVGDM AV+GVPGVAQGAIQG +Y A IKAEL G P +R+PF Y+DKGSMAT+ Sbjct 316 HPEVFVVGDMMAVDGVPGVAQGAIQGGRYAADAIKAELKGQTPDQRKPFSYWDKGSMATI 375 Query 374 SRFSAVAKI------GPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRG 427 SR+SAV ++ P E G+ AWL WL LHL YL+GF+ ++ TL++W F + R Sbjct 376 SRYSAVMQVPVPGFKKPFETEGYFAWLGWLALHLVYLVGFRNRLNTLINWFFAFTTRGRS 435 Query 428 QLTITDQQAFARTRLEQLAEL---AAEAQGSAASAKVA 462 QL +T+QQ +ART + QL+ L AAE GS A+ A Sbjct 436 QLAVTEQQVYARTAIGQLSALEKQAAEGNGSGPDAEAA 473 >gi|262202653|ref|YP_003273861.1| NADH dehydrogenase (ubiquinone) [Gordonia bronchialis DSM 43247] gi|262086000|gb|ACY21968.1| NADH dehydrogenase (ubiquinone) [Gordonia bronchialis DSM 43247] Length=483 Score = 625 bits (1611), Expect = 6e-177, Method: Compositional matrix adjust. Identities = 304/445 (69%), Positives = 362/445 (82%), Gaps = 8/445 (1%) Query 11 PPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAP 70 P R VVIIGSGFGGL AA++L++ADVD+ LIA+TTHHLFQP+LYQVATGI++EGEIAP Sbjct 6 PHARKHVVIIGSGFGGLFAAQRLRKADVDVTLIAKTTHHLFQPMLYQVATGIVAEGEIAP 65 Query 71 PTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDH 130 TRVVLRKQRN +VL+G+V I+L + V S LL TPYDSLI+AAGA QSYFGNDH Sbjct 66 ATRVVLRKQRNTKVLMGDVFEINLEAKTVTSRLLERVTVTPYDSLIIAAGADQSYFGNDH 125 Query 131 FAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIA 190 FAE+APGMK+ID ALELRGRIL AFEQAE S DP RAKLLTF VVGAGPTGVE+AGQIA Sbjct 126 FAEYAPGMKTIDHALELRGRILGAFEQAELSDDPAERAKLLTFVVVGAGPTGVELAGQIA 185 Query 191 ELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVT 250 E+++ TLKGAFR+ID T+ARVILLDAAPAVLPP G KLG +AA RL+K+GVE+QL AMV Sbjct 186 EMSDKTLKGAFRNIDPTEARVILLDAAPAVLPPFGEKLGGKAARRLEKMGVEVQLNAMVV 245 Query 251 DVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLS 310 D+D +G+ VK+ DGT RRIES CKVWSAGV AS LG+ LAEQS VELDRAGRV+V PDLS Sbjct 246 DLDYDGLVVKEKDGTTRRIESQCKVWSAGVQASPLGKQLAEQSGVELDRAGRVKVQPDLS 305 Query 311 IPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDKGSM 370 IPG+P+VFVVGDM AV+GVPGVAQGAIQG +Y A IKAEL G +PA+R+PF Y+DKGSM Sbjct 306 IPGHPDVFVVGDMMAVDGVPGVAQGAIQGGRYAADAIKAELKGHSPADRKPFSYYDKGSM 365 Query 371 ATVSRFSAVAKIGPV-------EFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLS 423 AT+SRFSAV ++ P+ E G+ AWL WL LHL YL+GF+ ++ TL++W F + Sbjct 366 ATISRFSAVMQV-PIPGTKKKFETEGYFAWLGWLALHLVYLVGFRNRLNTLVNWFFAFTT 424 Query 424 TRRGQLTITDQQAFARTRLEQLAEL 448 R QL +T+QQ +ART + QL+ L Sbjct 425 RGRSQLAVTEQQVYARTAIGQLSAL 449 >gi|226366452|ref|YP_002784235.1| NADH dehydrogenase [Rhodococcus opacus B4] gi|226244942|dbj|BAH55290.1| NADH dehydrogenase [Rhodococcus opacus B4] Length=464 Score = 623 bits (1607), Expect = 2e-176, Method: Compositional matrix adjust. Identities = 302/447 (68%), Positives = 357/447 (80%), Gaps = 0/447 (0%) Query 13 RRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPT 72 RRHRVV+IGSGFGGL + LK ADVDI +IARTTHHLFQPLLYQVATGI+S G+IAP T Sbjct 9 RRHRVVVIGSGFGGLFGTQALKNADVDITMIARTTHHLFQPLLYQVATGILSVGDIAPAT 68 Query 73 RVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFA 132 R+VLRKQ+N QVLLG+V IDL + + S L T TPYDSLIVAAGAGQSYFGNDHF+ Sbjct 69 RLVLRKQKNTQVLLGDVEKIDLEAKTITSRFLDRTTVTPYDSLIVAAGAGQSYFGNDHFS 128 Query 133 EFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAEL 192 EFAPGMK+IDDALELRGRIL AFEQAE SSDP RA+LLTF VVGAGPTGVE+AGQIAEL Sbjct 129 EFAPGMKTIDDALELRGRILGAFEQAELSSDPAERARLLTFVVVGAGPTGVELAGQIAEL 188 Query 193 AEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDV 252 + TL GAFR+ID +ARVILLD A VLP G KL ++A +L+KLGVEIQLGAMVTDV Sbjct 189 SRRTLSGAFRNIDPREARVILLDGADDVLPVYGGKLSRKARQQLEKLGVEIQLGAMVTDV 248 Query 253 DRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSIP 312 D +G+ VKD DGT RRIES CKVWSAGV AS LG+ +A+QS E+DRAGRV V PDLS+P Sbjct 249 DVDGLVVKDKDGTHRRIESQCKVWSAGVQASPLGKQIADQSDAEIDRAGRVMVNPDLSVP 308 Query 313 GYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDKGSMAT 372 G+P+VFV+GDM +++ +PG+AQ A+QG KY A IKA L G P +R PF+YFDKGSMAT Sbjct 309 GHPDVFVIGDMMSLDKLPGLAQVAMQGGKYAAKQIKAGLNGGKPEDRPPFKYFDKGSMAT 368 Query 373 VSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTIT 432 +SRFSAVAK+G +E SGFI W+ WL +HL YL+GF+++++TLLSWTVTFL R Q+ T Sbjct 369 ISRFSAVAKVGKLEISGFIGWVAWLAIHLMYLVGFRSRLSTLLSWTVTFLGRGRAQMAST 428 Query 433 DQQAFARTRLEQLAELAAEAQGSAASA 459 +Q FAR +EQL E + + SA Sbjct 429 EQWVFARNAMEQLERHEREKESADKSA 455 >gi|312139795|ref|YP_004007131.1| NADH dehydrogenase [Rhodococcus equi 103S] gi|325676753|ref|ZP_08156426.1| NADH dehydrogenase [Rhodococcus equi ATCC 33707] gi|311889134|emb|CBH48447.1| putative secreted NADH dehydrogenase [Rhodococcus equi 103S] gi|325552301|gb|EGD21990.1| NADH dehydrogenase [Rhodococcus equi ATCC 33707] Length=457 Score = 622 bits (1604), Expect = 4e-176, Method: Compositional matrix adjust. Identities = 304/442 (69%), Positives = 358/442 (81%), Gaps = 1/442 (0%) Query 6 EPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISE 65 P+A+P R HRVV+IGSGFGGL A + LKRADVDI L+ARTTHHLFQPLLYQVATGI+S Sbjct 3 NPSARPGR-HRVVVIGSGFGGLFATQALKRADVDITLVARTTHHLFQPLLYQVATGILSV 61 Query 66 GEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSY 125 G+IAP TR+VLRKQ+NV+VLLG+V IDLA V S LL T +DSLIVAAGAGQSY Sbjct 62 GDIAPATRMVLRKQKNVEVLLGDVESIDLAAGKVTSRLLERETVTEFDSLIVAAGAGQSY 121 Query 126 FGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEM 185 FGNDHFAEFAPGMK+IDDALELRGRIL AFEQAE S DPE R +LLTF VVGAGPTGVEM Sbjct 122 FGNDHFAEFAPGMKTIDDALELRGRILGAFEQAELSDDPEERRRLLTFVVVGAGPTGVEM 181 Query 186 AGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQL 245 AGQIAELA TL GAFR ID ARVIL+D APAVLP G KL ++AA RL+KLGVEIQL Sbjct 182 AGQIAELANRTLAGAFRRIDPRDARVILVDGAPAVLPVYGGKLSRKAAERLEKLGVEIQL 241 Query 246 GAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQV 305 AMVT+VD NG+ VKD DG RIE+ CKVWSAGV AS LGR L EQ+ E+DRAGRV V Sbjct 242 NAMVTNVDVNGLVVKDKDGNETRIEAQCKVWSAGVQASPLGRQLGEQTGAEVDRAGRVHV 301 Query 306 LPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYF 365 PDL++PGYPNVFV+GDM +++ +PG+AQ A+QG KY A I+A L GA P +R+PF+YF Sbjct 302 NPDLTLPGYPNVFVIGDMMSLDKLPGLAQVAMQGGKYAAKEIRAGLDGAQPQDRQPFKYF 361 Query 366 DKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTR 425 DKGSMAT+SR SAVAK+G +E SGFI W++WLV+HL YLIGF+++++T++SWTV+FL Sbjct 362 DKGSMATISRHSAVAKVGKLEISGFIGWIMWLVIHLMYLIGFRSRLSTVISWTVSFLGRG 421 Query 426 RGQLTITDQQAFARTRLEQLAE 447 R Q+ T+QQ FAR ++ L E Sbjct 422 RAQMASTEQQVFARNAIDVLQE 443 >gi|229493549|ref|ZP_04387334.1| NADH dehydrogenase [Rhodococcus erythropolis SK121] gi|229319510|gb|EEN85346.1| NADH dehydrogenase [Rhodococcus erythropolis SK121] Length=471 Score = 620 bits (1598), Expect = 2e-175, Method: Compositional matrix adjust. Identities = 301/449 (68%), Positives = 355/449 (80%), Gaps = 0/449 (0%) Query 12 PRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPP 71 P RHRVV+IGSGFGGL + LK+AD DI +IARTTHHLFQPLLYQVATGI+S G+IAP Sbjct 8 PHRHRVVVIGSGFGGLFGTQALKKADADITMIARTTHHLFQPLLYQVATGILSVGDIAPA 67 Query 72 TRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHF 131 TR+VLRKQ+N QVLLG V IDL Q V S LL TP+DSLIVAAGAGQSYFGND F Sbjct 68 TRLVLRKQKNAQVLLGEVETIDLENQTVTSRLLERVTVTPFDSLIVAAGAGQSYFGNDQF 127 Query 132 AEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAE 191 AEFAPGMK+IDDALELRGRIL AFEQAE S DP RA+LLTF VVGAGPTGVE+AGQIAE Sbjct 128 AEFAPGMKTIDDALELRGRILGAFEQAELSDDPAERARLLTFVVVGAGPTGVELAGQIAE 187 Query 192 LAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTD 251 L+ TL GAFR ID +ARV+LLD APAVLP G KL ++AA L+KLGVEIQL AMVTD Sbjct 188 LSRRTLDGAFRKIDPREARVVLLDGAPAVLPVYGGKLSRKAAETLEKLGVEIQLDAMVTD 247 Query 252 VDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSI 311 VD +G+ +K+ DGT+RRIES CKVWSAGV AS LG+ LAEQS E DRAGRV V PDLS+ Sbjct 248 VDNDGLIIKEKDGTLRRIESQCKVWSAGVQASPLGKQLAEQSGGETDRAGRVMVNPDLSL 307 Query 312 PGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDKGSMA 371 PG+PNVFV+GDM +++ +PG+AQ A+QG KY A IKA L G +P+ER PF+YFDKGSMA Sbjct 308 PGHPNVFVIGDMMSLDKLPGLAQVAMQGGKYAAKQIKASLDGKSPSERVPFKYFDKGSMA 367 Query 372 TVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTI 431 T+SRFSAVAK+G +E SGFI W+ WL +HL YL+GF+++ +TLLSW VTF R Q+ Sbjct 368 TISRFSAVAKVGKLEISGFIGWVAWLAIHLLYLVGFRSRASTLLSWAVTFFGRGRAQMAS 427 Query 432 TDQQAFARTRLEQLAELAAEAQGSAASAK 460 T+QQ FAR + +L + EA S +++ Sbjct 428 TEQQVFARNAMGELEKKNKEATESGSASN 456 >gi|226306598|ref|YP_002766558.1| NADH dehydrogenase [Rhodococcus erythropolis PR4] gi|226185715|dbj|BAH33819.1| probable NADH dehydrogenase [Rhodococcus erythropolis PR4] Length=471 Score = 619 bits (1596), Expect = 3e-175, Method: Compositional matrix adjust. Identities = 300/449 (67%), Positives = 355/449 (80%), Gaps = 0/449 (0%) Query 12 PRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPP 71 P RHRVV+IGSGFGGL + LK+AD DI +IARTTHHLFQPLLYQVATGI+S G+IAP Sbjct 8 PHRHRVVVIGSGFGGLFGTQALKKADADITMIARTTHHLFQPLLYQVATGILSVGDIAPA 67 Query 72 TRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHF 131 TR+VLRKQ+N QVLLG V IDL Q V S LL TP+DSLIVAAGAGQSYFGND F Sbjct 68 TRLVLRKQKNAQVLLGEVETIDLENQTVTSRLLERVTVTPFDSLIVAAGAGQSYFGNDQF 127 Query 132 AEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAE 191 AEFAPGMK+IDDALELRGRIL AFEQAE S DP RA+LLTF VVGAGPTGVE+AGQIAE Sbjct 128 AEFAPGMKTIDDALELRGRILGAFEQAELSDDPAERARLLTFVVVGAGPTGVELAGQIAE 187 Query 192 LAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTD 251 L+ TL GAFR ID +ARV+LLD APAVLP G KL ++AA L+KLGVEIQL AMVTD Sbjct 188 LSRRTLDGAFRKIDPREARVVLLDGAPAVLPVYGGKLSRKAAETLEKLGVEIQLDAMVTD 247 Query 252 VDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSI 311 VD +G+ +++ DGT+RRIES CKVWSAGV AS LG+ LAEQS E DRAGRV V PDLS+ Sbjct 248 VDNDGLIIREKDGTLRRIESQCKVWSAGVQASPLGKQLAEQSGGETDRAGRVMVNPDLSL 307 Query 312 PGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDKGSMA 371 PG+PNVFV+GDM +++ +PG+AQ A+QG KY A IKA L G +P+ER PF+YFDKGSMA Sbjct 308 PGHPNVFVIGDMMSLDKLPGLAQVAMQGGKYAAKQIKASLDGKSPSERVPFKYFDKGSMA 367 Query 372 TVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTI 431 T+SRFSAVAK+G +E SGFI W+ WL +HL YL+GF+++ +TLLSW VTF R Q+ Sbjct 368 TISRFSAVAKVGKLEISGFIGWVAWLAIHLLYLVGFRSRASTLLSWAVTFFGRGRAQMAS 427 Query 432 TDQQAFARTRLEQLAELAAEAQGSAASAK 460 T+QQ FAR + +L + EA S +++ Sbjct 428 TEQQVFARNAMGELEKKNKEATESGSTSN 456 >gi|326384950|ref|ZP_08206624.1| NADH dehydrogenase (ubiquinone) [Gordonia neofelifaecis NRRL B-59395] gi|326196340|gb|EGD53540.1| NADH dehydrogenase (ubiquinone) [Gordonia neofelifaecis NRRL B-59395] Length=475 Score = 610 bits (1572), Expect = 2e-172, Method: Compositional matrix adjust. Identities = 303/462 (66%), Positives = 363/462 (79%), Gaps = 9/462 (1%) Query 7 PTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEG 66 P RR +VVIIGSGFGGL AA++LK+ADVD+ LIA+TTHHLFQP+LYQVATGII+EG Sbjct 5 PATSLRRRRQVVIIGSGFGGLFAAQRLKKADVDVTLIAKTTHHLFQPMLYQVATGIIAEG 64 Query 67 EIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYF 126 EIAP TRVVLRKQ+N +VLLG V IDL Q V S+LL +T YD LI+AAGA QSYF Sbjct 65 EIAPATRVVLRKQKNTRVLLGEVFDIDLKTQVVRSQLLERVTETAYDDLIIAAGADQSYF 124 Query 127 GNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMA 186 GNDHFAE+APGMK+ID ALELRGRIL AFEQAE S DP + KLLTF V+GAGPTGVE+A Sbjct 125 GNDHFAEYAPGMKTIDHALELRGRILGAFEQAELSDDPAEQQKLLTFVVIGAGPTGVELA 184 Query 187 GQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLG 246 GQIAE++E TLKGAFR+ID T A+VILLDA+PAVLPP G KLG++A RL+ LGV++QLG Sbjct 185 GQIAEMSEKTLKGAFRNIDPTDAKVILLDASPAVLPPFGPKLGEKAKRRLESLGVDVQLG 244 Query 247 AMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVL 306 AMVTD+D +G+TVK+ DG+ RRIES CKVWSAGV AS LG+ LA+QS LDRAGRVQV Sbjct 245 AMVTDLDYDGLTVKEKDGSTRRIESQCKVWSAGVQASSLGKVLADQSDTRLDRAGRVQVG 304 Query 307 PDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAEL-AGANPAEREPFQYF 365 PDL+IPG+PNVFVVGDM AV+GVPGVAQGAIQG +Y A I AE+ G P +R+PF YF Sbjct 305 PDLTIPGHPNVFVVGDMMAVDGVPGVAQGAIQGGRYAADAILAEMRKGQTPDQRKPFSYF 364 Query 366 DKGSMATVSRFSAVAKIGPV-------EFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWT 418 DKGSMATVSRFSAV ++ P+ E G+IAWL WL LHL YL+GF+ ++ T+++W Sbjct 365 DKGSMATVSRFSAVMQV-PIPGTSKKFETEGYIAWLGWLALHLVYLVGFRNRLNTIINWF 423 Query 419 VTFLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAASAK 460 F S R QL +T+QQ +AR+ L +L+ L AA A+ Sbjct 424 FAFNSRGRTQLAVTEQQVYARSALTELSYLERLRLAEAAKAE 465 >gi|339294790|gb|AEJ46901.1| NADH dehydrogenase ndh [Mycobacterium tuberculosis CCDC5079] Length=342 Score = 598 bits (1543), Expect = 5e-169, Method: Compositional matrix adjust. Identities = 296/299 (99%), Positives = 297/299 (99%), Gaps = 0/299 (0%) Query 18 VIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTRVVLR 77 +IIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTRVVLR Sbjct 1 MIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTRVVLR 60 Query 78 KQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFAEFAPG 137 KQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFAEFAPG Sbjct 61 KQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFAEFAPG 120 Query 138 MKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAELAEHTL 197 MKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAELAEHTL Sbjct 121 MKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAELAEHTL 180 Query 198 KGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDVDRNGI 257 KGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDVDRNGI Sbjct 181 KGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDVDRNGI 240 Query 258 TVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSIPGYPN 316 TVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSIPG P Sbjct 241 TVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSIPGVPE 299 >gi|111024206|ref|YP_707178.1| NADH dehydrogenase [Rhodococcus jostii RHA1] gi|110823736|gb|ABG99020.1| NADH dehydrogenase [Rhodococcus jostii RHA1] Length=464 Score = 595 bits (1534), Expect = 5e-168, Method: Compositional matrix adjust. Identities = 299/447 (67%), Positives = 356/447 (80%), Gaps = 0/447 (0%) Query 13 RRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPT 72 RRHRVV+IGSGFGGL + LK ADVDI +IARTTHHLFQPLLYQVATGI+S G+IAP T Sbjct 9 RRHRVVVIGSGFGGLFGTQALKNADVDITMIARTTHHLFQPLLYQVATGILSVGDIAPAT 68 Query 73 RVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFA 132 R+VLRKQ+N +VLLG+V IDL + + S L T TPYDSLIVAAGAGQSYFGNDHF+ Sbjct 69 RLVLRKQKNTKVLLGDVDKIDLEAKTITSRFLDRTTVTPYDSLIVAAGAGQSYFGNDHFS 128 Query 133 EFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAEL 192 EFAPGMK+IDDALELRGRIL AFEQAE SSDP RA+LLTF VVGAGPTGVE+AGQIAEL Sbjct 129 EFAPGMKTIDDALELRGRILGAFEQAELSSDPAERARLLTFVVVGAGPTGVELAGQIAEL 188 Query 193 AEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDV 252 + TL GAFR+ID +ARVILLD A VLP G KL ++A +L+KLG+EIQLGAMV DV Sbjct 189 SRRTLSGAFRNIDPREARVILLDGADDVLPVYGGKLSRKARQQLEKLGIEIQLGAMVVDV 248 Query 253 DRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSIP 312 D +G+ VKD DGT RRIES CKVWSAGV AS LG+ +AEQS E+DRAGRV V PDLS+P Sbjct 249 DVDGLVVKDKDGTQRRIESQCKVWSAGVQASPLGKQIAEQSDAEIDRAGRVLVKPDLSVP 308 Query 313 GYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDKGSMAT 372 G+P VFV+GDM A++ +PG+AQ A+QG KY A I+A L+G P +R PF+YFDKGSMAT Sbjct 309 GHPEVFVIGDMMALDKLPGLAQVAMQGGKYAAKQIQAGLSGHKPEDRPPFKYFDKGSMAT 368 Query 373 VSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTIT 432 +SRFSAVAK+G +E SGFI W+ WL +HL YL+GF+++++TLLSWTVTFL R Q+ T Sbjct 369 ISRFSAVAKVGKLEISGFIGWVAWLAIHLMYLVGFRSRLSTLLSWTVTFLGRGRAQMAST 428 Query 433 DQQAFARTRLEQLAELAAEAQGSAASA 459 +Q FAR +EQL E + + S+ Sbjct 429 EQWVFARNAMEQLERHEREKEAAEKSS 455 >gi|333920782|ref|YP_004494363.1| NADH dehydrogenase [Amycolicicoccus subflavus DQS3-9A1] gi|333483003|gb|AEF41563.1| NADH dehydrogenase [Amycolicicoccus subflavus DQS3-9A1] Length=467 Score = 595 bits (1534), Expect = 5e-168, Method: Compositional matrix adjust. Identities = 294/455 (65%), Positives = 355/455 (79%), Gaps = 6/455 (1%) Query 13 RRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPT 72 +RHRVV+IGSGFGGL A +KLKRADV++ LIARTTHHLFQPLLYQVATGI+S GEIA PT Sbjct 9 QRHRVVVIGSGFGGLFATQKLKRADVEVTLIARTTHHLFQPLLYQVATGILSVGEIAAPT 68 Query 73 RVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFA 132 RVVLRKQRN QVL+G V ID+ Q V SE G T T +DSLIVAAGA QSYFGNDHFA Sbjct 69 RVVLRKQRNAQVLMGEVIDIDVKNQTVTSEQFGRTTVTGFDSLIVAAGAEQSYFGNDHFA 128 Query 133 EFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAEL 192 +FAPGMK++D ALELRG+ILSAFE AE S+DP KLLTF VVGAGPTGVEMAGQIAEL Sbjct 129 KFAPGMKTVDHALELRGKILSAFELAELSTDPAEHEKLLTFVVVGAGPTGVEMAGQIAEL 188 Query 193 AEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDV 252 A TL G FRHID +AR+ILLDAAP VLPP G KLG +A RL+KLGVEI L VTDV Sbjct 189 ARDTLVGTFRHIDPGEARIILLDAAPQVLPPFGEKLGSKAHRRLEKLGVEIMLNTFVTDV 248 Query 253 DRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSIP 312 D NGI +KD++G +RI + CK+W+AGV+AS LG+ L++Q+ E+DRAGRV V PDLSI Sbjct 249 DENGIVIKDAEGNQQRITAYCKLWAAGVAASPLGKILSDQTGTEIDRAGRVMVKPDLSIE 308 Query 313 GYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAG---ANPA-EREPFQYFDKG 368 G PN+FVVGDM +++ +PGVAQ AIQG +Y A TIK EL PA ER+PF+YF+KG Sbjct 309 GNPNIFVVGDMMSLDKLPGVAQVAIQGGRYAAKTIKQELKAEKKGEPAPERKPFKYFNKG 368 Query 369 SMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQ 428 +MA VS++SAVA++G + SGF+ WL+WL +HL Y++GFK++ TL SWTVTFL+ R Q Sbjct 369 NMAAVSKYSAVAQVGRINISGFLGWLMWLAVHLVYIVGFKSRAATLFSWTVTFLTNSRAQ 428 Query 429 LTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 463 LT+T+Q AR ++ L E+ EA+ SA K A+ Sbjct 429 LTVTEQWMTARLAIDHLEEI--EAKKSADKDKTAA 461 >gi|319949031|ref|ZP_08023128.1| NADH dehydrogenase [Dietzia cinnamea P4] gi|319437319|gb|EFV92342.1| NADH dehydrogenase [Dietzia cinnamea P4] Length=474 Score = 592 bits (1527), Expect = 4e-167, Method: Compositional matrix adjust. Identities = 289/446 (65%), Positives = 350/446 (79%), Gaps = 1/446 (0%) Query 2 SPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATG 61 + Q TA RRHRVVIIGSGFGGL AA++L++ADVD+ L+ART HHLFQPLLYQVATG Sbjct 6 TDQVTATAPAGRRHRVVIIGSGFGGLFAAQQLEKADVDVTLVARTGHHLFQPLLYQVATG 65 Query 62 IISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGA 121 I+S GEIAPPTR++LR Q+N V+LG+V ID+A + + + + YDSLIVAAGA Sbjct 66 ILSVGEIAPPTRLILRDQKNATVVLGDVDRIDVAAKKLHASAGHIDFDLEYDSLIVAAGA 125 Query 122 GQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPT 181 QSYFGNDHF +APGMK++DDALELR RIL FEQAE D E R +LLTF +VGAGPT Sbjct 126 NQSYFGNDHFERWAPGMKTVDDALELRSRILGCFEQAEVIDDEEERRRLLTFVIVGAGPT 185 Query 182 GVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGV 241 GVEMAGQ+AELA+HTL+ +FR ID ARVILLDAAPAVLPP G LG A ARL+K+GV Sbjct 186 GVEMAGQVAELAQHTLRNSFRRIDPASARVILLDAAPAVLPPFGNNLGNAARARLEKMGV 245 Query 242 EIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAG 301 EIQL AMVT+VD GI VKD DG+VRRI+++CK+WSAGV AS LG+ LA+Q+ E+DRAG Sbjct 246 EIQLNAMVTNVDYQGIEVKDPDGSVRRIDASCKIWSAGVKASPLGKQLADQTDAEIDRAG 305 Query 302 RVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAEL-AGANPAERE 360 RV V DLS+PG+P +FVVGDM +++ +PGVAQ AIQG KY A I AE+ G PAER+ Sbjct 306 RVLVNKDLSLPGHPEIFVVGDMMSLDNLPGVAQVAIQGGKYAAKQIIAEVEKGRTPAERK 365 Query 361 PFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVT 420 PF+YFDKGSMATVSR+SAV K+GP+E SGFIAW++WLV+HLAYLIGFK +ITT+ SW + Sbjct 366 PFKYFDKGSMATVSRYSAVVKMGPIEISGFIAWVMWLVVHLAYLIGFKNRITTMFSWGMQ 425 Query 421 FLSTRRGQLTITDQQAFARTRLEQLA 446 R QLT T Q +AR LE++A Sbjct 426 MGGDHRSQLTSTKQWVYARQALERVA 451 >gi|54024511|ref|YP_118753.1| putative NADH dehydrogenase [Nocardia farcinica IFM 10152] gi|54016019|dbj|BAD57389.1| putative NADH dehydrogenase [Nocardia farcinica IFM 10152] Length=476 Score = 587 bits (1513), Expect = 1e-165, Method: Compositional matrix adjust. Identities = 292/436 (67%), Positives = 346/436 (80%), Gaps = 1/436 (0%) Query 13 RRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPT 72 RRH+VV+IGSGFGGL K LKRADVD+ LI++T+ HLFQPLLYQVATGI+S GEIAP T Sbjct 9 RRHQVVVIGSGFGGLFGTKHLKRADVDVTLISKTSTHLFQPLLYQVATGILSVGEIAPAT 68 Query 73 RVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFA 132 R+VLRKQ+N +VLLG V IDL + V S LL TP+DSLIVA GA QSYFGND FA Sbjct 69 RLVLRKQKNARVLLGEVIDIDLEAKTVTSRLLNQNTVTPFDSLIVATGAQQSYFGNDQFA 128 Query 133 EFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAEL 192 +APGMK+IDDALELRGRIL AFE AE ++ E R +LLTF V+GAGPTGVE+AGQIAEL Sbjct 129 TYAPGMKTIDDALELRGRILGAFEGAELATTQEMRDRLLTFVVIGAGPTGVELAGQIAEL 188 Query 193 AEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDV 252 A+ TL+G F +ID ARVIL++ A AVL PMG KLG +A RL+++GVEIQL AMVTDV Sbjct 189 ADRTLEGTFDNIDPRDARVILIEGAGAVLGPMGPKLGGKAQRRLERMGVEIQLNAMVTDV 248 Query 253 DRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSR-VELDRAGRVQVLPDLSI 311 D +G+TVKD+DGT+RRIES+CKVWSAGV AS LG+ LAE+S E+DRAGRV V PDL+I Sbjct 249 DAHGVTVKDADGTIRRIESSCKVWSAGVQASPLGKMLAERSAGTEVDRAGRVIVEPDLTI 308 Query 312 PGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDKGSMA 371 G+PNVFVVGD+ +V GVPG AQGAIQGA Y A IKA L G P +R+PF+YF+KGSMA Sbjct 309 KGHPNVFVVGDLMSVPGVPGQAQGAIQGATYAAKQIKAGLHGQRPEDRKPFKYFNKGSMA 368 Query 372 TVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTI 431 TVSRFSAV +IG +EF GFIAWL WL LHL YLIG++++I T + W VTFL RGQ+ Sbjct 369 TVSRFSAVCQIGKLEFGGFIAWLAWLALHLYYLIGYRSRIITCIQWFVTFLGRSRGQMAA 428 Query 432 TDQQAFARTRLEQLAE 447 T+Q FAR LEQ+ E Sbjct 429 TEQWVFARLALEQVNE 444 >gi|289441770|ref|ZP_06431514.1| membrane NADH dehydrogenase ndhA [Mycobacterium tuberculosis T46] gi|289568304|ref|ZP_06448531.1| membrane NADH dehydrogenase ndhA [Mycobacterium tuberculosis T17] gi|289748878|ref|ZP_06508256.1| membrane NADH dehydrogenase ndhA [Mycobacterium tuberculosis T92] gi|289752421|ref|ZP_06511799.1| membrane NADH dehydrogenase ndhA [Mycobacterium tuberculosis EAS054] gi|289414689|gb|EFD11929.1| membrane NADH dehydrogenase ndhA [Mycobacterium tuberculosis T46] gi|289542057|gb|EFD45706.1| membrane NADH dehydrogenase ndhA [Mycobacterium tuberculosis T17] gi|289689465|gb|EFD56894.1| membrane NADH dehydrogenase ndhA [Mycobacterium tuberculosis T92] gi|289693008|gb|EFD60437.1| membrane NADH dehydrogenase ndhA [Mycobacterium tuberculosis EAS054] Length=470 Score = 584 bits (1506), Expect = 9e-165, Method: Compositional matrix adjust. Identities = 288/428 (68%), Positives = 342/428 (80%), Gaps = 2/428 (0%) Query 14 RHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTR 73 RHRVVIIGSGFGGLNAAK LKRADVDI LI++TT HLFQPLLYQVATGI+SEG+IAP TR Sbjct 14 RHRVVIIGSGFGGLNAAKALKRADVDITLISKTTTHLFQPLLYQVATGILSEGDIAPTTR 73 Query 74 VVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFAE 133 ++LR+Q+NV+VLLG V IDL Q V S+L+ T TPYDSLIVAAGA QSYFGND FA Sbjct 74 LILRRQKNVRVLLGEVNAIDLKAQTVTSKLMDMTTVTPYDSLIVAAGAQQSYFGNDEFAT 133 Query 134 FAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAELA 193 FAPGMK+IDDALELRGRIL AFE AE S+D R + LTF VVGAGPTGVE+AGQI ELA Sbjct 134 FAPGMKTIDDALELRGRILGAFEAAEVSTDHAERERRLTFVVVGAGPTGVEVAGQIVELA 193 Query 194 EHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDVD 253 E TL GAFR I ++ RVILLDAAPAVLPPMG KLG +A RL+K+ VE+QL AMVT VD Sbjct 194 ERTLAGAFRTITPSECRVILLDAAPAVLPPMGPKLGLKAQRRLEKMDVEVQLNAMVTAVD 253 Query 254 RNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSR-VELDRAGRVQVLPDLSIP 312 GIT+K+ DG RRIE ACKVW+AGV+AS LG+ +AE S E+DRAGRV V PDL++ Sbjct 254 YKGITIKEKDGGERRIECACKVWAAGVAASPLGKMIAEGSDGTEIDRAGRVIVEPDLTVK 313 Query 313 GYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGA-NPAEREPFQYFDKGSMA 371 G+PNVFVVGD+ V GVPGVAQGAIQGA+Y + IK + G +PA R+PF YF+KGSMA Sbjct 314 GHPNVFVVGDLTFVPGVPGVAQGAIQGARYATTVIKHMVKGNDDPANRKPFHYFNKGSMA 373 Query 372 TVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTI 431 T+SR SAVA++G +EF+G+ AWL WLVLHL YL+G++ +I L +W ++F+ RGQ+ I Sbjct 374 TISRHSAVAQVGKLEFAGYFAWLAWLVLHLVYLVGYRNRIAALFAWGISFMGRARGQMAI 433 Query 432 TDQQAFAR 439 T Q +AR Sbjct 434 TSQMIYAR 441 >gi|15607533|ref|NP_214906.1| membrane NADH dehydrogenase [Mycobacterium tuberculosis H37Rv] gi|15839774|ref|NP_334811.1| NADH dehydrogenase [Mycobacterium tuberculosis CDC1551] gi|148660157|ref|YP_001281680.1| membrane NADH dehydrogenase NdhA [Mycobacterium tuberculosis H37Ra] 57 more sequence titles Length=470 Score = 584 bits (1506), Expect = 1e-164, Method: Compositional matrix adjust. Identities = 288/428 (68%), Positives = 342/428 (80%), Gaps = 2/428 (0%) Query 14 RHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTR 73 RHRVVIIGSGFGGLNAAK LKRADVDI LI++TT HLFQPLLYQVATGI+SEG+IAP TR Sbjct 14 RHRVVIIGSGFGGLNAAKALKRADVDITLISKTTTHLFQPLLYQVATGILSEGDIAPTTR 73 Query 74 VVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFAE 133 ++LR+Q+NV+VLLG V IDL Q V S+L+ T TPYDSLIVAAGA QSYFGND FA Sbjct 74 LILRRQKNVRVLLGEVNAIDLKAQTVTSKLMDMTTVTPYDSLIVAAGAQQSYFGNDEFAT 133 Query 134 FAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAELA 193 FAPGMK+IDDALELRGRIL AFE AE S+D R + LTF VVGAGPTGVE+AGQI ELA Sbjct 134 FAPGMKTIDDALELRGRILGAFEAAEVSTDHAERERRLTFVVVGAGPTGVEVAGQIVELA 193 Query 194 EHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDVD 253 E TL GAFR I ++ RVILLDAAPAVLPPMG KLG +A RL+K+ VE+QL AMVT VD Sbjct 194 ERTLAGAFRTITPSECRVILLDAAPAVLPPMGPKLGLKAQRRLEKMDVEVQLNAMVTAVD 253 Query 254 RNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSR-VELDRAGRVQVLPDLSIP 312 GIT+K+ DG RRIE ACKVW+AGV+AS LG+ +AE S E+DRAGRV V PDL++ Sbjct 254 YKGITIKEKDGGERRIECACKVWAAGVAASPLGKMIAEGSDGTEIDRAGRVIVEPDLTVK 313 Query 313 GYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGA-NPAEREPFQYFDKGSMA 371 G+PNVFVVGD+ V GVPGVAQGAIQGA+Y + IK + G +PA R+PF YF+KGSMA Sbjct 314 GHPNVFVVGDLMFVPGVPGVAQGAIQGARYATTVIKHMVKGNDDPANRKPFHYFNKGSMA 373 Query 372 TVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTI 431 T+SR SAVA++G +EF+G+ AWL WLVLHL YL+G++ +I L +W ++F+ RGQ+ I Sbjct 374 TISRHSAVAQVGKLEFAGYFAWLAWLVLHLVYLVGYRNRIAALFAWGISFMGRARGQMAI 433 Query 432 TDQQAFAR 439 T Q +AR Sbjct 434 TSQMIYAR 441 >gi|183980712|ref|YP_001849003.1| NADH dehydrogenase Ndh_1 [Mycobacterium marinum M] gi|183174038|gb|ACC39148.1| NADH dehydrogenase Ndh_1 [Mycobacterium marinum M] Length=471 Score = 583 bits (1504), Expect = 2e-164, Method: Compositional matrix adjust. Identities = 293/459 (64%), Positives = 352/459 (77%), Gaps = 2/459 (0%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 M+P ++ RRH VVIIGSGFGGL+AA+ LKRADVDI LI++TT HLFQPLLYQVAT Sbjct 1 MTPPSSESSAAGRRHHVVIIGSGFGGLSAARALKRADVDITLISKTTTHLFQPLLYQVAT 60 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GI+SEG+IAP TR++LR+Q+NV+VLLG V IDL Q V S+L+ T +PYDSLIVAAG Sbjct 61 GILSEGDIAPTTRLILRRQKNVRVLLGEVMGIDLNAQTVTSKLMDMTTVSPYDSLIVAAG 120 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 A QSYFGND FA FAPGMK+IDDALELRGRIL AFE AE ++D + R + LTF VVGAGP Sbjct 121 AQQSYFGNDDFAIFAPGMKTIDDALELRGRILGAFEAAEVATDHDERERRLTFVVVGAGP 180 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVE+AG+I +LAE TL GAFR I ++ RVILLDAAPAVLPPMG KLG +A +L+K+ Sbjct 181 TGVELAGEIVQLAERTLAGAFRTITPSECRVILLDAAPAVLPPMGPKLGLKAQKKLEKMD 240 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSR-VELDR 299 VEIQL AMVT VD GITVKD DGT RRI+ ACKVW+AGV AS LG+ +AEQS E DR Sbjct 241 VEIQLNAMVTAVDYKGITVKDKDGTERRIDCACKVWAAGVQASPLGKMIAEQSDGTETDR 300 Query 300 AGRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGA-NPAE 358 AGRV V PDL++ G+P+VFV+GD+ +V GVPG+AQGAIQGA Y TIK + G +PA Sbjct 301 AGRVIVEPDLTVKGHPHVFVIGDLMSVPGVPGMAQGAIQGAHYATKTIKQAVKGHDDPAN 360 Query 359 REPFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWT 418 R+PFQYF+KGSMA +S +SAVAK+G VEF+GFIAWL WL LHL YL+G + ++ SW Sbjct 361 RKPFQYFNKGSMALISHYSAVAKVGKVEFAGFIAWLAWLFLHLLYLVGHRNRVAAAFSWG 420 Query 419 VTFLSTRRGQLTITDQQAFARTRLEQLAELAAEAQGSAA 457 + FL RGQ+ IT Q +AR + L A E SAA Sbjct 421 LAFLGRTRGQMAITSQMVYARLAMRYLQARAEEDALSAA 459 >gi|111221072|ref|YP_711866.1| NADH dehydrogenase [Frankia alni ACN14a] gi|111148604|emb|CAJ60277.1| NADH dehydrogenase [Frankia alni ACN14a] Length=492 Score = 582 bits (1500), Expect = 5e-164, Method: Compositional matrix adjust. Identities = 287/433 (67%), Positives = 345/433 (80%), Gaps = 2/433 (0%) Query 15 HRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTRV 74 HRVVIIGSGFGGL A+ L++A V+I L+A+TTHHLFQPLLYQVATGI+SEGEIAP TR Sbjct 25 HRVVIIGSGFGGLFTAQALRKAPVEITLVAKTTHHLFQPLLYQVATGILSEGEIAPTTRE 84 Query 75 VLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFAEF 134 VL +Q N QV+LG+VT ID+ + V S+LLG T PYDSL+VAAGAGQSYFGND FA Sbjct 85 VLSRQENAQVVLGDVTTIDVNAKTVTSQLLGRTTVHPYDSLVVAAGAGQSYFGNDQFATH 144 Query 135 APGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAELAE 194 APGMKSIDDALELRGRI FE AE S+DP +LLTF VVGAGPTGVEMAGQIAEL+ Sbjct 145 APGMKSIDDALELRGRIFGMFELAEGSTDPADIERLLTFVVVGAGPTGVEMAGQIAELSR 204 Query 195 HTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDVDR 254 TL+ FR ID TKARVILLDAAPAVLPP G +LG +AA +L+K+GVE+QLGA V DVD Sbjct 205 RTLRRDFRSIDPTKARVILLDAAPAVLPPFGERLGAKAADKLEKIGVEVQLGAKVIDVDA 264 Query 255 NGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSIPGY 314 GI V+DSDGT RRI+S CKVW+AGV+AS LG+ LAEQ+ +DRAGRV+VLPDL++PG+ Sbjct 265 TGIEVEDSDGTRRRIDSVCKVWAAGVAASPLGKQLAEQTGAGIDRAGRVEVLPDLTLPGH 324 Query 315 PNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDKGSMATVS 374 P ++V+GDM ++ +PGVAQ AIQG ++ A IKA +AG PF+Y DKGSMAT+S Sbjct 325 PEIYVIGDMMSLNRLPGVAQVAIQGGRHAAKEIKAWVAGKQTG--HPFKYNDKGSMATIS 382 Query 375 RFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTITDQ 434 RFSAVAKIG ++FSGF AWL+WL +HL Y+IGFK ++TTLL WTV+F+ R + T+T Q Sbjct 383 RFSAVAKIGNIQFSGFFAWLVWLAVHLVYIIGFKHRLTTLLHWTVSFIGRGRSERTVTQQ 442 Query 435 QAFARTRLEQLAE 447 Q FAR LE+L E Sbjct 443 QIFARAALERLGE 455 >gi|31791568|ref|NP_854061.1| membrane NADH dehydrogenase [Mycobacterium bovis AF2122/97] gi|121636304|ref|YP_976527.1| putative membrane NADH dehydrogenase ndhA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988776|ref|YP_002643463.1| putative membrane NADH dehydrogenase [Mycobacterium bovis BCG str. Tokyo 172] gi|31617154|emb|CAD93261.1| PROBABLE MEMBRANE NADH DEHYDROGENASE NDHA [Mycobacterium bovis AF2122/97] gi|121491951|emb|CAL70414.1| Probable membrane nadh dehydrogenase ndhA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771889|dbj|BAH24695.1| putative membrane NADH dehydrogenase [Mycobacterium bovis BCG str. Tokyo 172] gi|341600320|emb|CCC62990.1| probable membrane nadh dehydrogenase ndhA [Mycobacterium bovis BCG str. Moreau RDJ] Length=470 Score = 582 bits (1500), Expect = 5e-164, Method: Compositional matrix adjust. Identities = 287/428 (68%), Positives = 341/428 (80%), Gaps = 2/428 (0%) Query 14 RHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTR 73 RHRVVIIGSGFGGLNAAK LKRADVDI LI++TT HLFQPLLYQVATGI+SEG+IAP TR Sbjct 14 RHRVVIIGSGFGGLNAAKALKRADVDITLISKTTTHLFQPLLYQVATGILSEGDIAPTTR 73 Query 74 VVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFAE 133 ++LR+Q+NV+VLLG V IDL Q V S+L+ T TPYDSLIVAAGA QSYFGND FA Sbjct 74 LILRRQKNVRVLLGEVNAIDLKAQTVTSKLMDMTTVTPYDSLIVAAGAQQSYFGNDEFAT 133 Query 134 FAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAELA 193 FAPGMK+IDDALELRGRIL AFE AE S+D R + LTF VVGAGPTGVE+AGQI ELA Sbjct 134 FAPGMKTIDDALELRGRILGAFEAAEVSTDHAERERRLTFVVVGAGPTGVEVAGQIVELA 193 Query 194 EHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDVD 253 E TL GAFR I ++ RVILLDAAPAVLPPMG KLG +A RL+K+ E+QL AMVT VD Sbjct 194 ERTLAGAFRTITPSECRVILLDAAPAVLPPMGPKLGLKAQRRLEKMDAEVQLNAMVTAVD 253 Query 254 RNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSR-VELDRAGRVQVLPDLSIP 312 GIT+K+ DG RRIE ACKVW+AGV+AS LG+ +AE S E+DRAGRV V PDL++ Sbjct 254 YKGITIKEKDGGERRIECACKVWAAGVAASPLGKMIAEGSDGTEIDRAGRVIVEPDLTVK 313 Query 313 GYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGA-NPAEREPFQYFDKGSMA 371 G+PNVFVVGD+ V GVPGVAQGAIQGA+Y + IK + G +PA R+PF YF+KGSMA Sbjct 314 GHPNVFVVGDLMFVPGVPGVAQGAIQGARYATTVIKHMVKGNDDPANRKPFHYFNKGSMA 373 Query 372 TVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTI 431 T+SR SAVA++G +EF+G+ AWL WLVLHL YL+G++ +I L +W ++F+ RGQ+ I Sbjct 374 TISRHSAVAQVGKLEFAGYFAWLAWLVLHLVYLVGYRNRIAALFAWGISFMGRARGQMAI 433 Query 432 TDQQAFAR 439 T Q +AR Sbjct 434 TSQMIYAR 441 >gi|111024223|ref|YP_707195.1| NADH dehydrogenase [Rhodococcus jostii RHA1] gi|110823753|gb|ABG99037.1| NADH dehydrogenase [Rhodococcus jostii RHA1] Length=463 Score = 580 bits (1495), Expect = 2e-163, Method: Compositional matrix adjust. Identities = 292/457 (64%), Positives = 347/457 (76%), Gaps = 4/457 (0%) Query 11 PPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAP 70 PP RHRVV+IGSGFGGL A K L+RA+VD+ +I RTTHHLFQPLLYQVATGI+SEGEIAP Sbjct 7 PPARHRVVVIGSGFGGLFATKALRRAEVDVTVIDRTTHHLFQPLLYQVATGILSEGEIAP 66 Query 71 PTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDH 130 TR++L+ Q N V LG+VT IDL + V SE LG T YDSLIV+AGA QSYFGNDH Sbjct 67 STRMILKDQANAAVRLGDVTTIDLTERTVTSEHLGQITVTGYDSLIVSAGAQQSYFGNDH 126 Query 131 FAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIA 190 FAE APGMK+IDDALELRGRIL AFEQAE ++DP RA+LLTF VVGAGPTGVEMAGQIA Sbjct 127 FAEHAPGMKTIDDALELRGRILGAFEQAEVTTDPRERARLLTFVVVGAGPTGVEMAGQIA 186 Query 191 ELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVT 250 ELA TL GA+ + D AR++LLDAA AVLPP G LG AA L+KLGVE++LGA VT Sbjct 187 ELAHRTLVGAYSNFDPRDARIVLLDAASAVLPPFGDNLGSEAAETLEKLGVEVRLGASVT 246 Query 251 DVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLS 310 DVD +G+TV+D+DGT RIES CKVWSAGV+AS LGR LAEQS ++DRAGRV V DL+ Sbjct 247 DVDADGLTVRDADGTEHRIESVCKVWSAGVAASPLGRRLAEQSGADIDRAGRVAVDEDLT 306 Query 311 IPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPA----EREPFQYFD 366 +PG PNVFVVGDM + + +PGVAQ AIQG +Y A I AE+ A ER PF+Y D Sbjct 307 LPGNPNVFVVGDMMSRDRLPGVAQVAIQGGRYAAKQIAAEVCAAAKGRPVPERNPFRYRD 366 Query 367 KGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRR 426 KG+MAT+ RF AVAKIG +E +GF+AW++WL +H+ Y++GF++++ TLLSW TFL T R Sbjct 367 KGAMATICRFRAVAKIGGLELTGFLAWIMWLAVHVVYVVGFRSRLATLLSWAWTFLGTWR 426 Query 427 GQLTITDQQAFARTRLEQLAELAAEAQGSAASAKVAS 463 GQLT T QQ AR QL L + + A AS Sbjct 427 GQLTNTHQQITARNATAQLRHLECRIEDTEADVARAS 463 >gi|158316665|ref|YP_001509173.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Frankia sp. EAN1pec] gi|158112070|gb|ABW14267.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Frankia sp. EAN1pec] Length=504 Score = 578 bits (1490), Expect = 6e-163, Method: Compositional matrix adjust. Identities = 289/440 (66%), Positives = 344/440 (79%), Gaps = 2/440 (0%) Query 8 TAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGE 67 T+ ++HRVVIIGSGFGGL AA+ L+R V++ ++A+TTHHLFQPLLYQVATGI+SEGE Sbjct 4 TSDEHQKHRVVIIGSGFGGLFAAQALRREPVEVTVVAKTTHHLFQPLLYQVATGILSEGE 63 Query 68 IAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFG 127 IAP TR VLR+Q NV+V LG V IDLA + V S LLG T YDSLIVAAGAGQSYFG Sbjct 64 IAPTTREVLRRQENVKVELGEVVSIDLATKSVTSNLLGRTDVQHYDSLIVAAGAGQSYFG 123 Query 128 NDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAG 187 NDHFAE APGMKSIDDALELRGRI AFE AE + DP A+ +TF VVGAGPTGVEMAG Sbjct 124 NDHFAEHAPGMKSIDDALELRGRIFGAFEVAETTPDPADAARYMTFVVVGAGPTGVEMAG 183 Query 188 QIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGA 247 QIAEL+ TL+ FR ID+TKAR+ILLDAAP+VL G KL +A ++L+KLGVEIQLGA Sbjct 184 QIAELSHRTLRQDFRRIDTTKARIILLDAAPSVLGTFGEKLAAKATSKLEKLGVEIQLGA 243 Query 248 MVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLP 307 V +VD GI V+DSDGT RRIES CK+W+AGV+AS LG+ LAEQS LDRAGR+QV P Sbjct 244 RVVNVDSRGIDVEDSDGTRRRIESVCKIWAAGVAASPLGKQLAEQSGAVLDRAGRIQVQP 303 Query 308 DLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDK 367 DL++PG+P VFVVGDMA ++ +PGVAQ AIQG KY A TI L G P F+Y DK Sbjct 304 DLTLPGHPEVFVVGDMATLDRLPGVAQVAIQGGKYAAKTISTRLRGGPPMRN--FEYKDK 361 Query 368 GSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRG 427 GSMAT+SRFSAVA I V+ SGF+AWL+WL +HL Y+IGFK ++TTLL WTV+F+ R Sbjct 362 GSMATISRFSAVASIKGVQLSGFVAWLMWLAVHLVYIIGFKHRVTTLLHWTVSFIGRGRS 421 Query 428 QLTITDQQAFARTRLEQLAE 447 + T+T QQ FAR+ L++L E Sbjct 422 ERTVTTQQIFARSALQRLGE 441 >gi|111022305|ref|YP_705277.1| dehydrogenase [Rhodococcus jostii RHA1] gi|110821835|gb|ABG97119.1| dehydrogenase [Rhodococcus jostii RHA1] Length=717 Score = 577 bits (1487), Expect = 2e-162, Method: Compositional matrix adjust. Identities = 289/449 (65%), Positives = 344/449 (77%), Gaps = 6/449 (1%) Query 1 MSPQQEPTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVAT 60 M+ P A P RHRVV+IGSGFGGL A K L+RADVD+ ++ RTTHHLFQPLLYQVAT Sbjct 1 MTSPAAPAASP--RHRVVVIGSGFGGLFATKALRRADVDLTIVDRTTHHLFQPLLYQVAT 58 Query 61 GIISEGEIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAG 120 GI+SEGEIAP R++L Q N VLLG+V+ +DL Q V S G T T YDSLIV+AG Sbjct 59 GILSEGEIAPSNRMILEDQPNATVLLGDVSTVDLTAQTVTSVQDGRTTVTGYDSLIVSAG 118 Query 121 AGQSYFGNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGP 180 A QSYFGNDHFAE APGMK+IDDALELRGRIL AFE+AE SDP RAKLLTF VVGAGP Sbjct 119 AQQSYFGNDHFAEHAPGMKTIDDALELRGRILGAFERAEICSDPPERAKLLTFVVVGAGP 178 Query 181 TGVEMAGQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLG 240 TGVEMAGQIAELA TL +R+ D+ AR+ILLDAAP VLPP G LG +AAA L++LG Sbjct 179 TGVEMAGQIAELAHRTLVDVYRNFDTRDARIILLDAAPTVLPPFGLNLGNKAAAALEELG 238 Query 241 VEIQLGAMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRA 300 VEIQLG MVTDVD +G+TV+DSDG RI++ACKVWSAGV+A+ LG LA QS +LDRA Sbjct 239 VEIQLGTMVTDVDADGLTVRDSDGEHHRIDAACKVWSAGVAANPLGAQLAAQSGADLDRA 298 Query 301 GRVQVLPDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANP---- 356 GRV V DL++PG+PNVFVVGDM A + +PGVAQ AIQG +Y A IK EL A Sbjct 299 GRVTVEDDLTLPGHPNVFVVGDMMAKDRLPGVAQVAIQGGRYAAQQIKTELTAATKDRTT 358 Query 357 AEREPFQYFDKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLS 416 +ER PF+Y DKGSMAT++RF AV K+G E +G +AW++WL +H+ Y++GF++++ TL+S Sbjct 359 SERAPFRYRDKGSMATIARFKAVTKVGNPELTGVLAWILWLAVHVVYVVGFRSRLATLIS 418 Query 417 WTVTFLSTRRGQLTITDQQAFARTRLEQL 445 WT TFL RGQLTITDQQ AR + QL Sbjct 419 WTCTFLGRWRGQLTITDQQITARNAIAQL 447 >gi|226359938|ref|YP_002777716.1| NADH dehydrogenase [Rhodococcus opacus B4] gi|226238423|dbj|BAH48771.1| NADH dehydrogenase [Rhodococcus opacus B4] Length=478 Score = 575 bits (1483), Expect = 5e-162, Method: Compositional matrix adjust. Identities = 287/435 (66%), Positives = 338/435 (78%), Gaps = 1/435 (0%) Query 7 PTAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEG 66 P Q P RH+VV+IGSGFGGL A + L RADVD+ +I RTT HLFQPLLYQVATGI+SEG Sbjct 4 PAQQNPERHKVVVIGSGFGGLFATQGLHRADVDVTIIDRTTTHLFQPLLYQVATGILSEG 63 Query 67 EIAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYF 126 EIAP TR VL+ Q N +VLLG+VT IDLA Q V S+ T T YDSLIV+AGA QSYF Sbjct 64 EIAPSTRTVLKDQANARVLLGSVTDIDLAAQTVTSQCDDTTTVTRYDSLIVSAGAQQSYF 123 Query 127 GNDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMA 186 GNDHFAE APG+K+IDDALE RGRIL AFE+AE DP RA+ LTF VVGAGPTGVE+A Sbjct 124 GNDHFAEHAPGLKTIDDALEARGRILHAFEKAELIDDPVERARQLTFVVVGAGPTGVELA 183 Query 187 GQIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLG 246 GQIAELA TL G FR I T ARV+LLDAAP VLPP GAKLG A LQ GVE++LG Sbjct 184 GQIAELAHRTLDGTFRSISPTAARVVLLDAAPQVLPPFGAKLGTAATRTLQSKGVEVELG 243 Query 247 AMVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVL 306 A+VTDVD +G+TVKD+DG RRIE+ACKVWSAGVSAS L + LAEQ+ LDRAGR+ V Sbjct 244 AIVTDVDEHGLTVKDADGHTRRIEAACKVWSAGVSASPLAKQLAEQTGAPLDRAGRISVG 303 Query 307 PDLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGAN-PAEREPFQYF 365 DL++PG PNVFV+GDM + + +PGVAQ AIQG +Y A I E G + P +R PF+Y Sbjct 304 ADLTLPGQPNVFVIGDMMSRDQLPGVAQTAIQGGRYAARHIAREADGTSLPQDRAPFRYR 363 Query 366 DKGSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTR 425 DKGSMATV RFSAVA++G EFSGFIAWL+WL +HL Y++GF+++I TLLSWT +FL + Sbjct 364 DKGSMATVCRFSAVAQVGRFEFSGFIAWLLWLAVHLVYIVGFRSRIATLLSWTSSFLGSG 423 Query 426 RGQLTITDQQAFART 440 RGQLT ++QQ AR+ Sbjct 424 RGQLTTSEQQIRARS 438 >gi|308395349|ref|ZP_07491986.2| membrane NADH dehydrogenase ndhA [Mycobacterium tuberculosis SUMu012] gi|308367408|gb|EFP56259.1| membrane NADH dehydrogenase ndhA [Mycobacterium tuberculosis SUMu012] gi|339293445|gb|AEJ45556.1| membrane NADH dehydrogenase [Mycobacterium tuberculosis CCDC5079] gi|339297089|gb|AEJ49199.1| membrane NADH dehydrogenase [Mycobacterium tuberculosis CCDC5180] Length=454 Score = 575 bits (1482), Expect = 5e-162, Method: Compositional matrix adjust. Identities = 284/425 (67%), Positives = 339/425 (80%), Gaps = 2/425 (0%) Query 17 VVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTRVVL 76 +VIIGSGFGGLNAAK LKRADVDI LI++TT HLFQPLLYQVATGI+SEG+IAP TR++L Sbjct 1 MVIIGSGFGGLNAAKALKRADVDITLISKTTTHLFQPLLYQVATGILSEGDIAPTTRLIL 60 Query 77 RKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFAEFAP 136 R+Q+NV+VLLG V IDL Q V S+L+ T TPYDSLIVAAGA QSYFGND FA FAP Sbjct 61 RRQKNVRVLLGEVNAIDLKAQTVTSKLMDMTTVTPYDSLIVAAGAQQSYFGNDEFATFAP 120 Query 137 GMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAELAEHT 196 GMK+IDDALELRGRIL AFE AE S+D R + LTF VVGAGPTGVE+AGQI ELAE T Sbjct 121 GMKTIDDALELRGRILGAFEAAEVSTDHAERERRLTFVVVGAGPTGVEVAGQIVELAERT 180 Query 197 LKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDVDRNG 256 L GAFR I ++ RVILLDAAPAVLPPMG KLG +A RL+K+ VE+QL AMVT VD G Sbjct 181 LAGAFRTITPSECRVILLDAAPAVLPPMGPKLGLKAQRRLEKMDVEVQLNAMVTAVDYKG 240 Query 257 ITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSR-VELDRAGRVQVLPDLSIPGYP 315 IT+K+ DG RRIE ACKVW+AGV+AS LG+ +AE S E+DRAGRV V PDL++ G+P Sbjct 241 ITIKEKDGGERRIECACKVWAAGVAASPLGKMIAEGSDGTEIDRAGRVIVEPDLTVKGHP 300 Query 316 NVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGA-NPAEREPFQYFDKGSMATVS 374 NVFVVGD+ V GVPGVAQGAIQGA+Y + IK + G +PA R+PF YF+KGSMAT+S Sbjct 301 NVFVVGDLMFVPGVPGVAQGAIQGARYATTVIKHMVKGNDDPANRKPFHYFNKGSMATIS 360 Query 375 RFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTITDQ 434 R SAVA++G +EF+G+ AWL WLVLHL YL+G++ +I L +W ++F+ RGQ+ IT Q Sbjct 361 RHSAVAQVGKLEFAGYFAWLAWLVLHLVYLVGYRNRIAALFAWGISFMGRARGQMAITSQ 420 Query 435 QAFAR 439 +AR Sbjct 421 MIYAR 425 >gi|86739688|ref|YP_480088.1| NADH dehydrogenase [Frankia sp. CcI3] gi|86566550|gb|ABD10359.1| NADH dehydrogenase [Frankia sp. CcI3] Length=500 Score = 573 bits (1478), Expect = 2e-161, Method: Compositional matrix adjust. Identities = 283/431 (66%), Positives = 342/431 (80%), Gaps = 2/431 (0%) Query 15 HRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTRV 74 HRVVIIGSGFGGL A+ L++A V++ L+A+TTHHLFQPLLYQVATGI+SEGEIAP TR Sbjct 25 HRVVIIGSGFGGLFTAQALRKAPVEVTLVAKTTHHLFQPLLYQVATGILSEGEIAPTTRE 84 Query 75 VLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFAEF 134 VL +Q N QV+LG VT ID+ + V S+LLG T YDSL+VAAGAGQSYFGNDHFA Sbjct 85 VLSRQDNAQVVLGEVTTIDVNARTVTSQLLGRTTVHHYDSLVVAAGAGQSYFGNDHFATH 144 Query 135 APGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAELAE 194 APGMKSIDDALELRGRI FE AE S+DP +LLTF VVGAGPTGVEMAGQIAEL+ Sbjct 145 APGMKSIDDALELRGRIFGMFELAEASTDPADVERLLTFVVVGAGPTGVEMAGQIAELSR 204 Query 195 HTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDVDR 254 TL+ FR ID KARVILLDAAPAVLPP G +LG +AA +L K+GV++QLGA V +VD Sbjct 205 RTLRRDFRSIDPAKARVILLDAAPAVLPPFGERLGAKAADKLTKIGVDVQLGAKVVNVDA 264 Query 255 NGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSIPGY 314 GI V+DSDGT RRI+S CKVW+AGV+AS LGR LAEQ+ LDRAGR++VLPDL++PG+ Sbjct 265 TGIDVEDSDGTRRRIDSVCKVWAAGVAASPLGRQLAEQTGAGLDRAGRIEVLPDLTLPGH 324 Query 315 PNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDKGSMATVS 374 P VFV+GDMA++ +PGVAQ AIQG ++ A I+A +AG PF+Y DKGSMAT+S Sbjct 325 PEVFVIGDMASLNRLPGVAQVAIQGGRHAAKEIQAWVAGKQTG--RPFEYHDKGSMATIS 382 Query 375 RFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTITDQ 434 RFSAVA IG V+FSGF AWL+WL +HL Y+IGFK ++TTLL WTV+F+ R + T+T+Q Sbjct 383 RFSAVASIGKVQFSGFFAWLVWLAVHLVYIIGFKHRLTTLLHWTVSFIGRGRSERTVTEQ 442 Query 435 QAFARTRLEQL 445 Q FAR +++L Sbjct 443 QIFARVAVQRL 453 >gi|312199570|ref|YP_004019631.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Frankia sp. EuI1c] gi|311230906|gb|ADP83761.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Frankia sp. EuI1c] Length=494 Score = 573 bits (1478), Expect = 2e-161, Method: Compositional matrix adjust. Identities = 285/434 (66%), Positives = 344/434 (80%), Gaps = 2/434 (0%) Query 14 RHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTR 73 RHRV++IGSGFGGL AA+ L+ A D+ L+A+T+HHLFQPLLYQVATGI+SEGEIAPPTR Sbjct 19 RHRVLVIGSGFGGLFAAQALRSAWADVTLVAKTSHHLFQPLLYQVATGILSEGEIAPPTR 78 Query 74 VVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFAE 133 VLR+QRN +V+LG VT+IDLA + V SEL+G T YDSLIVAAGAGQSYFGND FAE Sbjct 79 EVLRRQRNARVVLGEVTNIDLAERTVTSELIGRTTVHHYDSLIVAAGAGQSYFGNDQFAE 138 Query 134 FAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAELA 193 APGMKSIDDALELRGRIL FE AE S+DP +LLTF VVGAGPTGVEMAGQIAELA Sbjct 139 HAPGMKSIDDALELRGRILGMFELAEASTDPADIERLLTFVVVGAGPTGVEMAGQIAELA 198 Query 194 EHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDVD 253 TL+ FR+ID KAR++LLDAAPAVLP G KLG A RL+KLGV++QLGAMVTDVD Sbjct 199 HRTLRRDFRNIDPHKARIVLLDAAPAVLPAFGDKLGDYAVKRLEKLGVDVQLGAMVTDVD 258 Query 254 RNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSIPG 313 GI VKD+ G RRIES CKVW+AGV A+ LGR LA+QS +LDRAGRV+V PDL++PG Sbjct 259 ATGIEVKDAGGGKRRIESVCKVWAAGVQANPLGRQLADQSGAKLDRAGRVEVEPDLTLPG 318 Query 314 YPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDKGSMATV 373 YP V+VVGDM ++ +PGVAQ AIQG ++ A I+A + G ++ F+Y DKGSMAT+ Sbjct 319 YPEVYVVGDMISLNRLPGVAQVAIQGGRHAARDIRARINGRQTGKK--FKYHDKGSMATI 376 Query 374 SRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRGQLTITD 433 SRFSAVA IG ++ +GF+AWL+WL +HL Y+IGFK ++TTLL W V+F+ R + T+T Sbjct 377 SRFSAVASIGRLKLTGFVAWLMWLAVHLVYIIGFKHRVTTLLHWAVSFVGRGRSERTVTH 436 Query 434 QQAFARTRLEQLAE 447 QQ FART + +L E Sbjct 437 QQIFARTAISRLGE 450 >gi|288923057|ref|ZP_06417210.1| NADH dehydrogenase (ubiquinone) [Frankia sp. EUN1f] gi|288345607|gb|EFC79983.1| NADH dehydrogenase (ubiquinone) [Frankia sp. EUN1f] Length=503 Score = 573 bits (1478), Expect = 2e-161, Method: Compositional matrix adjust. Identities = 283/440 (65%), Positives = 344/440 (79%), Gaps = 2/440 (0%) Query 8 TAQPPRRHRVVIIGSGFGGLNAAKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGE 67 T+ ++HRVV+IGSGFGGL A + L+R V++ ++A+TTHHLFQPLLYQVATGI+SEGE Sbjct 9 TSDGHQKHRVVVIGSGFGGLFATQALRREPVEVTVVAKTTHHLFQPLLYQVATGILSEGE 68 Query 68 IAPPTRVVLRKQRNVQVLLGNVTHIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFG 127 IAP TR VLR+Q N +V++G VT IDLA + V S LLG + PYDSLIVAAGAGQSYFG Sbjct 69 IAPATREVLRRQTNARVIMGEVTEIDLAAKTVTSNLLGRSDVQPYDSLIVAAGAGQSYFG 128 Query 128 NDHFAEFAPGMKSIDDALELRGRILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAG 187 NDHFAE APGMKSIDDALELRGRI AFE AE + +PE A+ +TF VVGAGPTGVEMAG Sbjct 129 NDHFAEHAPGMKSIDDALELRGRIFGAFEVAETAPNPEDVARYMTFVVVGAGPTGVEMAG 188 Query 188 QIAELAEHTLKGAFRHIDSTKARVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGA 247 QIAE+A TL+ FR ID+TKAR+ILLDAAP VL G KL +A A+L+K+GVEIQLGA Sbjct 189 QIAEMAHRTLRHDFRRIDTTKARIILLDAAPTVLGTFGEKLAAKATAKLEKIGVEIQLGA 248 Query 248 MVTDVDRNGITVKDSDGTVRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLP 307 V +VD GI V+DSDG RRIES CK+W+AGV+AS LG+ LAEQS LDRAGR+QV P Sbjct 249 RVINVDSRGIDVEDSDGNRRRIESVCKIWAAGVAASPLGKQLAEQSGAVLDRAGRIQVQP 308 Query 308 DLSIPGYPNVFVVGDMAAVEGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDK 367 DL++PG+P VFVVGDMAA++ +PGVAQ AIQG +Y A TI L P F+Y DK Sbjct 309 DLTLPGHPEVFVVGDMAALDRLPGVAQVAIQGGQYAAKTIATRLRSGPPMRN--FEYKDK 366 Query 368 GSMATVSRFSAVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKTKITTLLSWTVTFLSTRRG 427 GSMAT+SRFSAVA I V+ SGF+AWL+WL +HL Y+IGFK ++TTLL WTV+F+ R Sbjct 367 GSMATISRFSAVASIKGVQLSGFLAWLMWLAVHLVYIIGFKHRVTTLLHWTVSFIGRGRS 426 Query 428 QLTITDQQAFARTRLEQLAE 447 + T+T QQ FAR+ L++L + Sbjct 427 ERTVTQQQIFARSALQRLGD 446 Lambda K H 0.319 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 973451812480 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40