BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1861 Length=101 Score E Sequences producing significant alignments: (Bits) Value gi|15608998|ref|NP_216377.1| transmembrane protein [Mycobacteriu... 187 4e-46 gi|340626869|ref|YP_004745321.1| hypothetical protein MCAN_18761... 184 3e-45 gi|289757967|ref|ZP_06517345.1| transmembrane protein [Mycobacte... 184 4e-45 gi|289443338|ref|ZP_06433082.1| transmembrane protein [Mycobacte... 170 8e-41 gi|289750436|ref|ZP_06509814.1| LOW QUALITY PROTEIN: transmembra... 129 2e-28 gi|342861242|ref|ZP_08717890.1| hypothetical protein MCOL_20261 ... 120 9e-26 gi|183982744|ref|YP_001851035.1| hypothetical protein MMAR_2738 ... 104 4e-21 gi|118618406|ref|YP_906738.1| hypothetical protein MUL_3016 [Myc... 97.1 8e-19 gi|326381634|ref|ZP_08203328.1| hypothetical protein SCNU_01755 ... 87.0 7e-16 gi|41407668|ref|NP_960504.1| hypothetical protein MAP1570 [Mycob... 77.8 5e-13 gi|213965402|ref|ZP_03393598.1| integral membrane protein [Coryn... 74.7 4e-12 gi|326385166|ref|ZP_08206834.1| hypothetical protein SCNU_19577 ... 73.9 7e-12 gi|118465488|ref|YP_882044.1| integral membrane protein [Mycobac... 73.2 1e-11 gi|120404053|ref|YP_953882.1| transglycosylase-associated protei... 72.4 2e-11 gi|15828108|ref|NP_302371.1| integral membrane protein [Mycobact... 71.6 4e-11 gi|254819332|ref|ZP_05224333.1| hypothetical protein MintA_05373... 70.9 5e-11 gi|118467709|ref|YP_887919.1| integral membrane protein [Mycobac... 70.1 9e-11 gi|240173351|ref|ZP_04752009.1| transglycosylase-associated prot... 70.1 1e-10 gi|315444262|ref|YP_004077141.1| hypothetical protein Mspyr1_267... 65.5 3e-09 gi|145223930|ref|YP_001134608.1| transglycosylase-associated pro... 65.1 3e-09 gi|340795528|ref|YP_004760991.1| hypothetical protein CVAR_2575 ... 63.9 8e-09 gi|260432398|ref|ZP_05786369.1| transglycosylase-associated prot... 63.2 1e-08 gi|254466765|ref|ZP_05080176.1| Transglycosylase-associated prot... 62.4 2e-08 gi|254511540|ref|ZP_05123607.1| hypothetical protein RKLH11_2081... 61.6 3e-08 gi|296141382|ref|YP_003648625.1| transglycosylase [Tsukamurella ... 61.2 5e-08 gi|116250940|ref|YP_766778.1| transmembrane protein [Rhizobium l... 60.1 1e-07 gi|294781893|ref|ZP_06747225.1| transglycosylase-associated prot... 59.3 2e-07 gi|294010270|ref|YP_003543730.1| hypothetical protein SJA_C1-028... 59.3 2e-07 gi|334345993|ref|YP_004554545.1| transglycosylase-associated pro... 58.5 3e-07 gi|94498086|ref|ZP_01304649.1| hypothetical protein SKA58_03124 ... 58.2 5e-07 gi|189499866|ref|YP_001959336.1| Transglycosylase-associated pro... 57.8 5e-07 gi|262067307|ref|ZP_06026919.1| putative membrane protein [Fusob... 57.0 1e-06 gi|92113413|ref|YP_573341.1| transglycosylase-associated protein... 56.6 1e-06 gi|76809430|ref|YP_334412.1| hypothetical protein BURPS1710b_303... 56.6 1e-06 gi|56698350|ref|YP_168723.1| hypothetical protein SPO3528 [Ruege... 56.6 1e-06 gi|296164852|ref|ZP_06847409.1| integral membrane protein [Mycob... 56.2 2e-06 gi|237784897|ref|YP_002905602.1| hypothetical protein ckrop_0273... 55.5 2e-06 gi|169630299|ref|YP_001703948.1| hypothetical protein MAB_3218 [... 55.5 2e-06 gi|257125435|ref|YP_003163549.1| transglycosylase [Leptotrichia ... 55.5 3e-06 gi|15964379|ref|NP_384732.1| hypothetical protein SMc02320 [Sino... 55.1 3e-06 gi|300780238|ref|ZP_07090094.1| integral membrane protein [Coryn... 54.7 4e-06 gi|340788834|ref|YP_004754299.1| transglycosylase associated pro... 54.3 6e-06 gi|163744978|ref|ZP_02152338.1| Transglycosylase-associated prot... 53.9 7e-06 gi|148259143|ref|YP_001233270.1| transglycosylase-associated pro... 53.9 7e-06 gi|323529824|ref|YP_004231976.1| transglycosylase-associated pro... 53.9 7e-06 gi|38234811|ref|NP_940578.1| hypothetical protein DIP2275 [Coryn... 53.9 8e-06 gi|254488204|ref|ZP_05101409.1| transglycosylase-associated prot... 53.9 8e-06 gi|187926342|ref|YP_001892687.1| transglycosylase [Ralstonia pic... 53.5 9e-06 gi|330815860|ref|YP_004359565.1| Transglycosylase-associated pro... 53.5 9e-06 gi|332665191|ref|YP_004447979.1| transglycosylase-associated pro... 53.5 1e-05 >gi|15608998|ref|NP_216377.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|15841330|ref|NP_336367.1| hypothetical protein MT1910 [Mycobacterium tuberculosis CDC1551] gi|31793051|ref|NP_855544.1| transmembrane protein [Mycobacterium bovis AF2122/97] 72 more sequence titles Length=101 Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 101/101 (100%), Positives = 101/101 (100%), Gaps = 0/101 (0%) Query 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG Sbjct 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 Query 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRKT 101 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRKT Sbjct 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRKT 101 >gi|340626869|ref|YP_004745321.1| hypothetical protein MCAN_18761 [Mycobacterium canettii CIPT 140010059] gi|340005059|emb|CCC44208.1| putative conserved transmembrane protein [Mycobacterium canettii CIPT 140010059] Length=101 Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 100/101 (99%), Positives = 100/101 (99%), Gaps = 0/101 (0%) Query 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 MDITATTEF AMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG Sbjct 1 MDITATTEFFAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 Query 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRKT 101 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRKT Sbjct 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRKT 101 >gi|289757967|ref|ZP_06517345.1| transmembrane protein [Mycobacterium tuberculosis T85] gi|289713531|gb|EFD77543.1| transmembrane protein [Mycobacterium tuberculosis T85] Length=101 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 100/101 (99%), Positives = 100/101 (99%), Gaps = 0/101 (0%) Query 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG Sbjct 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 Query 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRKT 101 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMV KT Sbjct 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVCKT 101 >gi|289443338|ref|ZP_06433082.1| transmembrane protein [Mycobacterium tuberculosis T46] gi|289416257|gb|EFD13497.1| transmembrane protein [Mycobacterium tuberculosis T46] Length=92 Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 92/92 (100%), Positives = 92/92 (100%), Gaps = 0/92 (0%) Query 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG Sbjct 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 Query 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLL 92 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLL Sbjct 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLL 92 >gi|289750436|ref|ZP_06509814.1| LOW QUALITY PROTEIN: transmembrane protein [Mycobacterium tuberculosis T92] gi|289691023|gb|EFD58452.1| LOW QUALITY PROTEIN: transmembrane protein [Mycobacterium tuberculosis T92] Length=81 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 69/70 (99%), Positives = 69/70 (99%), Gaps = 0/70 (0%) Query 32 AGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFFVALGGAVVL 91 GWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFFVALGGAVVL Sbjct 12 PGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFFVALGGAVVL 71 Query 92 LWIVGMVRKT 101 LWIVGMVRKT Sbjct 72 LWIVGMVRKT 81 >gi|342861242|ref|ZP_08717890.1| hypothetical protein MCOL_20261 [Mycobacterium colombiense CECT 3035] gi|342131142|gb|EGT84423.1| hypothetical protein MCOL_20261 [Mycobacterium colombiense CECT 3035] Length=101 Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 79/101 (79%), Positives = 91/101 (91%), Gaps = 0/101 (0%) Query 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 M + A TE+ A+NL+GKTGIGW+GYI+IGGIAG+LASKIVKGGGSGILM++VIGVVGAF Sbjct 1 MTVMAATEYLALNLNGKTGIGWIGYIIIGGIAGFLASKIVKGGGSGILMDIVIGVVGAFV 60 Query 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRKT 101 AGLVLN LGVDVN GGYWFTFFVALGGAVVLLW+ + R+T Sbjct 61 AGLVLNLLGVDVNSGGYWFTFFVALGGAVVLLWLSRLARRT 101 >gi|183982744|ref|YP_001851035.1| hypothetical protein MMAR_2738 [Mycobacterium marinum M] gi|183176070|gb|ACC41180.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=98 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 60/100 (60%), Positives = 73/100 (73%), Gaps = 2/100 (2%) Query 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 MD+ A TEF A + T +GWLGYI+IG +AGW+A KIVKGGGSGILMN+VIGVVGA Sbjct 1 MDVMAATEFLARSTT-LTSVGWLGYIIIGALAGWIAGKIVKGGGSGILMNIVIGVVGALI 59 Query 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRK 100 G +L+ VD GG+WFT F A+ G+V+LLWIVG R Sbjct 60 GGFLLSFF-VDTAAGGWWFTLFTAILGSVILLWIVGKARH 98 >gi|118618406|ref|YP_906738.1| hypothetical protein MUL_3016 [Mycobacterium ulcerans Agy99] gi|118570516|gb|ABL05267.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=95 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 56/96 (59%), Positives = 68/96 (71%), Gaps = 2/96 (2%) Query 5 ATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLV 64 A TEF A + T +GWLGYI+IG +AGW+A KIVKG GSGILMN+VIGVVGA G + Sbjct 2 AATEFLARS-STLTSVGWLGYIIIGALAGWIAGKIVKGAGSGILMNIVIGVVGALIGGFL 60 Query 65 LNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRK 100 L+ VD GG+WFT F A+ G+V+LLWI G R Sbjct 61 LSFF-VDTAAGGWWFTLFTAILGSVILLWIAGKARH 95 >gi|326381634|ref|ZP_08203328.1| hypothetical protein SCNU_01755 [Gordonia neofelifaecis NRRL B-59395] gi|326199881|gb|EGD57061.1| hypothetical protein SCNU_01755 [Gordonia neofelifaecis NRRL B-59395] Length=103 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 49/99 (50%), Positives = 66/99 (67%), Gaps = 2/99 (2%) Query 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 MD A E A + T +GW+ Y+ IG IAGW+A KIV GGGSG+LMN+V+G+ GA Sbjct 1 MDTLAAAEILARS-SVATNVGWISYLFIGAIAGWIAGKIVNGGGSGVLMNIVVGIAGALI 59 Query 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVR 99 G +L+ +D GG+WFT A+ G+V+LLWIVG +R Sbjct 60 GGFLLSFF-LDTASGGWWFTLLTAVLGSVILLWIVGKIR 97 >gi|41407668|ref|NP_960504.1| hypothetical protein MAP1570 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396021|gb|AAS03887.1| hypothetical protein MAP_1570 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336457506|gb|EGO36512.1| putative membrane protein [Mycobacterium avium subsp. paratuberculosis S397] Length=99 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/101 (58%), Positives = 76/101 (76%), Gaps = 2/101 (1%) Query 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 MD+TA TE+ A + T +G +GYI+IGG+AG LASKIV+G G+GILM++VIG+VGA Sbjct 1 MDVTAATEYLARS-TTLTSVGIIGYIIIGGLAGALASKIVRGSGAGILMDIVIGIVGALI 59 Query 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRKT 101 G +L+ V+ GG FTFF AL G+V+LLWIVGMVR+T Sbjct 60 GGFILSFF-VNTAGGGLIFTFFTALLGSVILLWIVGMVRRT 99 >gi|213965402|ref|ZP_03393598.1| integral membrane protein [Corynebacterium amycolatum SK46] gi|213952018|gb|EEB63404.1| integral membrane protein [Corynebacterium amycolatum SK46] Length=97 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 41/82 (50%), Positives = 61/82 (75%), Gaps = 1/82 (1%) Query 20 IGWLGYIVIGGIAGWLASKIVKGGGS-GILMNVVIGVVGAFGAGLVLNALGVDVNHGGYW 78 +G++G+I+IGG+AGW+ SKI+ GI++N+V+G+VG F G +L G+DV GG + Sbjct 14 LGFVGWIIIGGLAGWIGSKIMNTDEQMGIVLNIVVGIVGGFLGGWLLTLFGIDVASGGMF 73 Query 79 FTFFVALGGAVVLLWIVGMVRK 100 F+F L GAV+LLWIVG+V+K Sbjct 74 FSFLTCLLGAVILLWIVGLVQK 95 >gi|326385166|ref|ZP_08206834.1| hypothetical protein SCNU_19577 [Gordonia neofelifaecis NRRL B-59395] gi|326196131|gb|EGD53337.1| hypothetical protein SCNU_19577 [Gordonia neofelifaecis NRRL B-59395] Length=104 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 45/84 (54%), Positives = 57/84 (68%), Gaps = 2/84 (2%) Query 18 TGIGWLGYIVIGGIAGWLASKIV-KGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGG 76 T +GW+GYIVIGG+AGWLASK+ G+L N+V+GV+GA G VL+ +D GG Sbjct 20 TSVGWIGYIVIGGLAGWLASKVTGVDAQMGVLANIVVGVIGALLGGFVLSYF-LDTAGGG 78 Query 77 YWFTFFVALGGAVVLLWIVGMVRK 100 WFTF ALGGAVVLL ++ V Sbjct 79 LWFTFLTALGGAVVLLAVLKAVTS 102 >gi|118465488|ref|YP_882044.1| integral membrane protein [Mycobacterium avium 104] gi|118166775|gb|ABK67672.1| integral membrane protein [Mycobacterium avium 104] Length=116 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/67 (62%), Positives = 52/67 (78%), Gaps = 1/67 (1%) Query 35 LASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWI 94 LASKIV+G G+GILM++VIG+VGA G +L+ V+ GG FTFF AL G+V+LLWI Sbjct 51 LASKIVRGSGAGILMDIVIGIVGALIGGFILSFF-VNTAGGGLIFTFFTALLGSVILLWI 109 Query 95 VGMVRKT 101 VGMVR+T Sbjct 110 VGMVRRT 116 >gi|120404053|ref|YP_953882.1| transglycosylase-associated protein [Mycobacterium vanbaalenii PYR-1] gi|119956871|gb|ABM13876.1| Transglycosylase-associated protein [Mycobacterium vanbaalenii PYR-1] Length=101 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/101 (59%), Positives = 75/101 (75%), Gaps = 2/101 (1%) Query 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 MD+ A TEF A + T +GW+GYI+IG IAGW+A KIVKG GSGILMN+VIG+VGA Sbjct 1 MDVVAATEFLARS-STLTSVGWIGYIIIGAIAGWIAGKIVKGSGSGILMNIVIGIVGALV 59 Query 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRKT 101 G +L+ +D GG+WFT F A+ G+V+LLWIVGMV K+ Sbjct 60 GGFLLSFF-LDTAGGGWWFTLFTAILGSVILLWIVGMVTKS 99 >gi|15828108|ref|NP_302371.1| integral membrane protein [Mycobacterium leprae TN] gi|221230585|ref|YP_002504001.1| integral membrane protein [Mycobacterium leprae Br4923] gi|13093662|emb|CAC31009.1| integral membrane protein [Mycobacterium leprae] gi|219933692|emb|CAR72151.1| integral membrane protein [Mycobacterium leprae Br4923] Length=99 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/101 (59%), Positives = 77/101 (77%), Gaps = 2/101 (1%) Query 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 MD+ A TE+ A + T +GW+GYI+IGGIAGW+A KIV+GGGSGILMN+VIGVVGA Sbjct 1 MDVMAATEYLARS-TTLTSVGWIGYIIIGGIAGWIAGKIVQGGGSGILMNIVIGVVGALI 59 Query 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRKT 101 G +L+ V+ GG+WFT F ++ G+V+LLW+VG VRKT Sbjct 60 GGFLLSFF-VNTAAGGWWFTLFTSILGSVILLWVVGRVRKT 99 >gi|254819332|ref|ZP_05224333.1| hypothetical protein MintA_05373 [Mycobacterium intracellulare ATCC 13950] Length=99 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/101 (60%), Positives = 78/101 (78%), Gaps = 2/101 (1%) Query 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 MDI A TEF A + T +GW+GYI+IGGIAG +ASKI++G G+GILM++VIG+VGA Sbjct 1 MDIMAATEFLARS-STLTSVGWIGYIIIGGIAGAIASKIIRGSGAGILMDIVIGIVGALV 59 Query 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRKT 101 G +L+ VD GGY+FTFF AL G+++LLWIVGMVR+T Sbjct 60 GGFILSFF-VDTASGGYFFTFFTALLGSLLLLWIVGMVRRT 99 >gi|118467709|ref|YP_887919.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155] gi|118168996|gb|ABK69892.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155] Length=100 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 58/100 (58%), Positives = 74/100 (74%), Gaps = 2/100 (2%) Query 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 MD+ A TE A + T +GW+GYI+IG IAGW+A KIVKGGGSG+LMN+VIGVVGA Sbjct 1 MDVLAATEILARS-STLTSVGWIGYIIIGAIAGWIAGKIVKGGGSGLLMNIVIGVVGALI 59 Query 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRK 100 G +L+ +D GG+WFT F A+ G+V+LLW+VGMVR Sbjct 60 GGFLLSFF-LDTAGGGWWFTLFTAILGSVILLWLVGMVRS 98 >gi|240173351|ref|ZP_04752009.1| transglycosylase-associated protein [Mycobacterium kansasii ATCC 12478] Length=99 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/100 (58%), Positives = 74/100 (74%), Gaps = 2/100 (2%) Query 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 M + A TEF A + T +GW+GYI+IG IAGW+A KIVKG GSGILMN+VIG+VGA Sbjct 1 MGVMAATEFLARS-TTLTSVGWIGYIIIGAIAGWIAGKIVKGSGSGILMNIVIGIVGALV 59 Query 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRK 100 G +L+ VD GG+WFT F A+ G+V+LLW+VGMV+K Sbjct 60 GGFLLSFF-VDTAAGGWWFTLFTAILGSVILLWLVGMVQK 98 >gi|315444262|ref|YP_004077141.1| hypothetical protein Mspyr1_26750 [Mycobacterium sp. Spyr1] gi|315262565|gb|ADT99306.1| predicted membrane protein [Mycobacterium sp. Spyr1] Length=100 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/100 (56%), Positives = 73/100 (73%), Gaps = 2/100 (2%) Query 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 MD+ A TE A + T +GW+GYI+IG IAGW+A KIVKGGGSGIL+N+VIG+VGA Sbjct 1 MDMVAATEILARSTT-LTSVGWIGYIIIGAIAGWIAGKIVKGGGSGILLNIVIGIVGALV 59 Query 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRK 100 G +L+ +D GG+WFT F A+ G+V+LLWIVG V+ Sbjct 60 GGFLLSFF-LDTAGGGWWFTLFTAILGSVILLWIVGKVQS 98 >gi|145223930|ref|YP_001134608.1| transglycosylase-associated protein [Mycobacterium gilvum PYR-GCK] gi|145216416|gb|ABP45820.1| Transglycosylase-associated protein [Mycobacterium gilvum PYR-GCK] Length=100 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/100 (56%), Positives = 73/100 (73%), Gaps = 2/100 (2%) Query 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 MD+ A TE A + T +GW+GYI+IG IAGW+A KIVKGGGSGIL+N+VIG+VGA Sbjct 1 MDMVAATEILARS-TTLTSVGWIGYIIIGAIAGWIAGKIVKGGGSGILLNIVIGIVGALI 59 Query 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRK 100 G +L+ +D GG+WFT F A+ G+V+LLWIVG V+ Sbjct 60 GGFLLSFF-LDTAGGGWWFTLFTAILGSVILLWIVGKVQS 98 >gi|340795528|ref|YP_004760991.1| hypothetical protein CVAR_2575 [Corynebacterium variabile DSM 44702] gi|340535438|gb|AEK37918.1| putative membrane protein [Corynebacterium variabile DSM 44702] Length=100 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/97 (43%), Positives = 63/97 (65%), Gaps = 5/97 (5%) Query 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIV-KGGGSGILMNVVIGVVGAF 59 MD T+T +A + + +GW ++IGG+AGW+ SKI+ + G+++N+++GV+G F Sbjct 1 MD-TSTIILAAGSTPALSFVGW---VIIGGLAGWIGSKIMGRDSEMGLVLNIIVGVIGGF 56 Query 60 GAGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVG 96 G +L GVDV GG+ F+F L GAV+ LWIVG Sbjct 57 LGGWLLTLFGVDVAGGGWIFSFLTCLLGAVIFLWIVG 93 >gi|260432398|ref|ZP_05786369.1| transglycosylase-associated protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416226|gb|EEX09485.1| transglycosylase-associated protein [Silicibacter lacuscaerulensis ITI-1157] Length=84 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/79 (46%), Positives = 56/79 (71%), Gaps = 1/79 (1%) Query 23 LGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFF 82 L + IG IAGWL+ KI+ G G G++ N+++G+VGAF AG++ ALG V GG + + F Sbjct 7 LAMLFIGAIAGWLSGKIMSGRGFGLIGNIIVGIVGAFLAGMIFPALGFSVG-GGVFSSIF 65 Query 83 VALGGAVVLLWIVGMVRKT 101 A GAV+LL+++G+++K Sbjct 66 FATIGAVILLFLIGLIKKV 84 >gi|254466765|ref|ZP_05080176.1| Transglycosylase-associated protein [Rhodobacterales bacterium Y4I] gi|206687673|gb|EDZ48155.1| Transglycosylase-associated protein [Rhodobacterales bacterium Y4I] Length=85 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/79 (45%), Positives = 58/79 (74%), Gaps = 1/79 (1%) Query 23 LGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFF 82 +G ++IG +AGWL+ KI++G G G+L N+++GVVGAF AG++ ALG GG++++ Sbjct 7 IGMLIIGALAGWLSGKIMQGRGFGLLGNIIVGVVGAFLAGMIFPALGFAAG-GGFFWSLV 65 Query 83 VALGGAVVLLWIVGMVRKT 101 A GAV+LL+++ ++RK Sbjct 66 HATIGAVILLFLISLIRKA 84 >gi|254511540|ref|ZP_05123607.1| hypothetical protein RKLH11_2081 [Rhodobacteraceae bacterium KLH11] gi|221535251|gb|EEE38239.1| hypothetical protein RKLH11_2081 [Rhodobacteraceae bacterium KLH11] Length=76 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/76 (49%), Positives = 54/76 (72%), Gaps = 1/76 (1%) Query 26 IVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFFVAL 85 + IG IAGWL+ KI++G G G++ N+++GVVGAF AG + ALG V GG + F A Sbjct 2 VFIGAIAGWLSGKIMEGRGFGLIGNIIVGVVGAFLAGTIFPALGFAVG-GGLLSSIFFAT 60 Query 86 GGAVVLLWIVGMVRKT 101 GAV+LL+++G++RK Sbjct 61 IGAVILLFLIGLIRKA 76 >gi|296141382|ref|YP_003648625.1| transglycosylase [Tsukamurella paurometabola DSM 20162] gi|296029516|gb|ADG80286.1| Transglycosylase-associated protein [Tsukamurella paurometabola DSM 20162] Length=103 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/97 (42%), Positives = 56/97 (58%), Gaps = 1/97 (1%) Query 3 ITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIV-KGGGSGILMNVVIGVVGAFGA 61 IT T + M GW +I+IGG+AGW+ASKI+ GI++NVV+G VG + Sbjct 2 ITQYTADTVMLASKNFSPGWFAWIIIGGLAGWIASKIMGTDKSQGIILNVVVGCVGGWLG 61 Query 62 GLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMV 98 G VL V G++ TF AL GA +LL++V +V Sbjct 62 GYVLRLFDVQTGGFGWFLTFVTALVGACILLFVVKLV 98 >gi|116250940|ref|YP_766778.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255588|emb|CAK06669.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae 3841] Length=124 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/86 (45%), Positives = 55/86 (64%), Gaps = 5/86 (5%) Query 17 KTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGG 76 GIGW+ IVIGGIAGWLA ++K G+LMN+++G+VGA A +L+ GV + G Sbjct 42 SAGIGWIAAIVIGGIAGWLAEMLMK-SNMGVLMNIILGIVGAIVANFILSLFGVAL---G 97 Query 77 YWFTFFVA-LGGAVVLLWIVGMVRKT 101 W + +A GA +L+ + MVR+T Sbjct 98 GWLGYLIAGFIGACILIAVARMVRRT 123 >gi|294781893|ref|ZP_06747225.1| transglycosylase-associated protein [Fusobacterium sp. 1_1_41FAA] gi|294481704|gb|EFG29473.1| transglycosylase-associated protein [Fusobacterium sp. 1_1_41FAA] Length=81 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/81 (35%), Positives = 53/81 (66%), Gaps = 0/81 (0%) Query 20 IGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWF 79 +G + ++V+G ++GWLA+K++K +G++ N++ G++G+F G V N G G Sbjct 1 MGVIAWLVLGALSGWLANKLMKNSSTGLIDNIITGIIGSFIGGFVFNFFGAKTITGLNLH 60 Query 80 TFFVALGGAVVLLWIVGMVRK 100 + FV++ GA +LLWI+ +R+ Sbjct 61 SIFVSVVGACILLWIINKIRR 81 >gi|294010270|ref|YP_003543730.1| hypothetical protein SJA_C1-02840 [Sphingobium japonicum UT26S] gi|292673600|dbj|BAI95118.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length=84 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/77 (46%), Positives = 55/77 (72%), Gaps = 3/77 (3%) Query 25 YIVIGGIAGWLASKIVK-GGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFFV 83 ++V+GGI GWLAS +++ GIL+N+V+G+VGAF GL+ + G +N G ++F V Sbjct 6 WLVVGGIIGWLASMVMRTDAQQGILLNIVVGIVGAFVGGLIFS--GGSINDGLTLYSFLV 63 Query 84 ALGGAVVLLWIVGMVRK 100 +L GA++LL IV +VR+ Sbjct 64 SLVGAIILLAIVNLVRR 80 >gi|334345993|ref|YP_004554545.1| transglycosylase-associated protein [Sphingobium chlorophenolicum L-1] gi|334102615|gb|AEG50039.1| Transglycosylase-associated protein [Sphingobium chlorophenolicum L-1] Length=84 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/77 (45%), Positives = 55/77 (72%), Gaps = 3/77 (3%) Query 25 YIVIGGIAGWLASKIVK-GGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFFV 83 ++V+GG+ GWLAS +++ GIL+N+V+G+VGAF GL+ + G +N G ++F V Sbjct 6 WLVVGGVIGWLASMVMRTDAQQGILLNIVVGIVGAFIGGLIFS--GGSINDGLTLYSFLV 63 Query 84 ALGGAVVLLWIVGMVRK 100 +L GA++LL IV +VR+ Sbjct 64 SLVGAIILLAIVNLVRR 80 >gi|94498086|ref|ZP_01304649.1| hypothetical protein SKA58_03124 [Sphingomonas sp. SKA58] gi|94422521|gb|EAT07559.1| hypothetical protein SKA58_03124 [Sphingomonas sp. SKA58] Length=84 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/77 (45%), Positives = 55/77 (72%), Gaps = 3/77 (3%) Query 25 YIVIGGIAGWLASKIVK-GGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFFV 83 ++++GGI GWLAS +++ GIL+N+V+G+VGAF GL+ + G +N G ++F V Sbjct 6 WLIVGGIIGWLASMVMRTDAQQGILLNIVVGIVGAFIGGLIFS--GGSINDGLTVYSFLV 63 Query 84 ALGGAVVLLWIVGMVRK 100 +L GA++LL IV +VR+ Sbjct 64 SLVGAIILLAIVNLVRR 80 >gi|189499866|ref|YP_001959336.1| Transglycosylase-associated protein [Chlorobium phaeobacteroides BS1] gi|189495307|gb|ACE03855.1| Transglycosylase-associated protein [Chlorobium phaeobacteroides BS1] Length=80 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/77 (46%), Positives = 54/77 (71%), Gaps = 2/77 (2%) Query 25 YIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFFVA 84 ++ IG +AGWLA I+KGGG G+ +N+V+G+VGA G + LG ++ GG+ + A Sbjct 6 FLAIGAVAGWLAGNIMKGGGFGLPVNIVVGIVGAVIGGFLFGLLG--ISAGGWIGSLITA 63 Query 85 LGGAVVLLWIVGMVRKT 101 L GA+VLL+IV +++KT Sbjct 64 LVGAIVLLYIVSLIKKT 80 >gi|262067307|ref|ZP_06026919.1| putative membrane protein [Fusobacterium periodonticum ATCC 33693] gi|291378871|gb|EFE86389.1| putative membrane protein [Fusobacterium periodonticum ATCC 33693] Length=93 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/82 (35%), Positives = 52/82 (64%), Gaps = 0/82 (0%) Query 20 IGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWF 79 +G + ++V+G ++GWLA+K++K +G++ N++ G++G+F G V N G G Sbjct 1 MGVIAWLVLGALSGWLANKLMKNSSTGLIDNIITGIIGSFIGGFVFNFFGAKTITGFNLH 60 Query 80 TFFVALGGAVVLLWIVGMVRKT 101 + FV++ GA +LLWI+ + T Sbjct 61 SIFVSVVGACILLWIISELLTT 82 >gi|92113413|ref|YP_573341.1| transglycosylase-associated protein [Chromohalobacter salexigens DSM 3043] gi|91796503|gb|ABE58642.1| Transglycosylase-associated protein [Chromohalobacter salexigens DSM 3043] Length=80 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/77 (46%), Positives = 55/77 (72%), Gaps = 2/77 (2%) Query 25 YIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFFVA 84 +++IGG+AGW+A KI++GGG G+L N+ +G+VGA G + + LG ++H + +A Sbjct 6 WLIIGGLAGWIAGKIMRGGGFGVLGNIGVGIVGAVIGGFLFSLLG--LSHTNVIGSLIMA 63 Query 85 LGGAVVLLWIVGMVRKT 101 + GAVVLLW+V VRK+ Sbjct 64 VIGAVVLLWVVAKVRKS 80 >gi|76809430|ref|YP_334412.1| hypothetical protein BURPS1710b_3035 [Burkholderia pseudomallei 1710b] gi|76578883|gb|ABA48358.1| putative membrane protein [Burkholderia pseudomallei 1710b] Length=323 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 31/80 (39%), Positives = 54/80 (68%), Gaps = 1/80 (1%) Query 21 GWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFT 80 G + +++IG IAGWLA +VKGGG G+L+++++G+VGA G L + GG+ + Sbjct 244 GLIMWLIIGAIAGWLAGLLVKGGGFGLLVDIIVGIVGAVIGGW-LAGILGIHIGGGFISS 302 Query 81 FFVALGGAVVLLWIVGMVRK 100 VA+ GAV+LL+++ + ++ Sbjct 303 VIVAVIGAVILLFVIRLFKR 322 >gi|56698350|ref|YP_168723.1| hypothetical protein SPO3528 [Ruegeria pomeroyi DSS-3] gi|56680087|gb|AAV96753.1| membrane protein, putative [Ruegeria pomeroyi DSS-3] Length=84 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/74 (45%), Positives = 52/74 (71%), Gaps = 1/74 (1%) Query 28 IGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFFVALGG 87 +G +AGWL+ KI+ G G G+L N+++G+VGAF AG + ALG V GG+ + A G Sbjct 12 VGALAGWLSGKIMAGRGFGLLGNILVGIVGAFLAGTIFPALGFAVG-GGFLASVIHATIG 70 Query 88 AVVLLWIVGMVRKT 101 +V+LL+++G++RK Sbjct 71 SVILLFVIGLIRKA 84 >gi|296164852|ref|ZP_06847409.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899791|gb|EFG79240.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=99 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/101 (54%), Positives = 75/101 (75%), Gaps = 2/101 (1%) Query 1 MDITATTEFSAMNLDGKTGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFG 60 MD+ A TE+ A + T +G +GYI+IGG+AG LASKI++G G+GILM++VIG++GA Sbjct 1 MDVMAATEYLARS-TTFTSVGIIGYIIIGGLAGALASKILRGSGAGILMDIVIGIIGALI 59 Query 61 AGLVLNALGVDVNHGGYWFTFFVALGGAVVLLWIVGMVRKT 101 G +L+ V+ GG FTFF AL G+++LLWIVGMVR+T Sbjct 60 GGFILSFF-VNTAGGGLIFTFFTALLGSLILLWIVGMVRRT 99 >gi|237784897|ref|YP_002905602.1| hypothetical protein ckrop_0273 [Corynebacterium kroppenstedtii DSM 44385] gi|237757809|gb|ACR17059.1| putative membrane protein [Corynebacterium kroppenstedtii DSM 44385] Length=97 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/71 (48%), Positives = 50/71 (71%), Gaps = 1/71 (1%) Query 31 IAGWLASKIV-KGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFFVALGGAV 89 +AGW+ASKI+ G+ +N+++G++G F G +L A+G DV GG +F+F L GAV Sbjct 25 LAGWIASKIMGTDAQMGVPLNIIVGIIGGFLGGWLLGAVGFDVEGGGKFFSFLTCLLGAV 84 Query 90 VLLWIVGMVRK 100 +LLWIVG+V K Sbjct 85 ILLWIVGLVTK 95 >gi|169630299|ref|YP_001703948.1| hypothetical protein MAB_3218 [Mycobacterium abscessus ATCC 19977] gi|169242266|emb|CAM63294.1| Hypothetical protein MAB_3218 [Mycobacterium abscessus] Length=101 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/81 (47%), Positives = 55/81 (68%), Gaps = 1/81 (1%) Query 19 GIGWLGYIVIGGIAGWLASKIVK-GGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGY 77 GIGW+ +IVIGG+AGW+ASKI+ G+L+N+V+G+VGA G +L+ V G+ Sbjct 17 GIGWIAWIVIGGLAGWVASKIMDTDAQQGLLLNIVVGIVGALLGGFLLSLFDVGTYGFGW 76 Query 78 WFTFFVALGGAVVLLWIVGMV 98 TF AL GA +LL++V +V Sbjct 77 VLTFITALVGACILLFLVRLV 97 >gi|257125435|ref|YP_003163549.1| transglycosylase [Leptotrichia buccalis C-1013-b] gi|257049374|gb|ACV38558.1| Transglycosylase-associated protein [Leptotrichia buccalis C-1013-b] Length=82 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/82 (40%), Positives = 55/82 (68%), Gaps = 1/82 (1%) Query 20 IGWLGYIVIGGIAGWLASKIVKGGGS-GILMNVVIGVVGAFGAGLVLNALGVDVNHGGYW 78 +G + +I++GG++GW+AS I+K S G++ N+V G++GAF G+V N +G + G Sbjct 1 MGIIAWIILGGLSGWIASIIMKKNTSMGVIANIVTGIIGAFIGGVVFNFIGAEKATGLNL 60 Query 79 FTFFVALGGAVVLLWIVGMVRK 100 + V++ GA +LLWI+G + K Sbjct 61 HSILVSVVGACILLWIIGKINK 82 >gi|15964379|ref|NP_384732.1| hypothetical protein SMc02320 [Sinorhizobium meliloti 1021] gi|150395448|ref|YP_001325915.1| transglycosylase-associated protein [Sinorhizobium medicae WSM419] gi|334315079|ref|YP_004547698.1| transglycosylase-associated protein [Sinorhizobium meliloti AK83] gi|15073556|emb|CAC45198.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021] gi|150026963|gb|ABR59080.1| Transglycosylase-associated protein [Sinorhizobium medicae WSM419] gi|333810506|gb|AEG03175.1| Transglycosylase-associated protein [Sinorhizobium meliloti BL225C] gi|334094073|gb|AEG52084.1| Transglycosylase-associated protein [Sinorhizobium meliloti AK83] Length=84 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/77 (43%), Positives = 53/77 (69%), Gaps = 1/77 (1%) Query 25 YIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFFVA 84 ++++G +AGWLA IV GGG G+L N+VIG+VGAF AGL+ A+G+ + G + Sbjct 9 FLIVGAVAGWLAGLIVSGGGFGLLGNIVIGIVGAFIAGLLFPAIGISIGTGIFSAIIHST 68 Query 85 LGGAVVLLWIVGMVRKT 101 + GAV+LL ++ +V++ Sbjct 69 I-GAVILLVLIRVVKQA 84 >gi|300780238|ref|ZP_07090094.1| integral membrane protein [Corynebacterium genitalium ATCC 33030] gi|300534348|gb|EFK55407.1| integral membrane protein [Corynebacterium genitalium ATCC 33030] Length=89 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/80 (53%), Positives = 55/80 (69%), Gaps = 1/80 (1%) Query 20 IGWLGYIVIGGIAGWLASKIVKGGGS-GILMNVVIGVVGAFGAGLVLNALGVDVNHGGYW 78 +G+LG+IVIGGIAGW+AS I+K S GI N+ GVVG G VL+ GVDV G + Sbjct 5 LGFLGWIVIGGIAGWIASMIMKRDASMGIFANIAAGVVGGLVGGWVLSLFGVDVAGGNWI 64 Query 79 FTFFVALGGAVVLLWIVGMV 98 F+ F + GAV++LWIV M+ Sbjct 65 FSMFTCIIGAVIVLWIVNMI 84 >gi|340788834|ref|YP_004754299.1| transglycosylase associated protein [Collimonas fungivorans Ter331] gi|340554101|gb|AEK63476.1| Transglycosylase associated protein [Collimonas fungivorans Ter331] Length=81 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/82 (41%), Positives = 59/82 (72%), Gaps = 1/82 (1%) Query 20 IGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWF 79 +G++ ++++G IAGWLA +VKGGG G+L+++++G+VGAF G + LG+ V GG+ Sbjct 1 MGFIAWLIVGAIAGWLAGVLVKGGGFGVLVDIIVGIVGAFIGGWLAGILGIQVG-GGWIA 59 Query 80 TFFVALGGAVVLLWIVGMVRKT 101 + A GAV+LL+I+ ++++ Sbjct 60 SIVTATVGAVILLFILRLIKRA 81 >gi|163744978|ref|ZP_02152338.1| Transglycosylase-associated protein [Oceanibulbus indolifex HEL-45] gi|161381796|gb|EDQ06205.1| Transglycosylase-associated protein [Oceanibulbus indolifex HEL-45] Length=84 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/82 (42%), Positives = 54/82 (66%), Gaps = 2/82 (2%) Query 18 TGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGY 77 TGIGW I++GG+AGW+A KI+K G++MN+++G++GA A +L L V GG+ Sbjct 2 TGIGWFAAIIVGGLAGWIAEKIMK-SDMGLIMNIILGIIGALVANWLL-VLIVGSTLGGW 59 Query 78 WFTFFVALGGAVVLLWIVGMVR 99 + V + GA +L+W+ +VR Sbjct 60 FGQLVVGIIGACLLIWVTRLVR 81 >gi|148259143|ref|YP_001233270.1| transglycosylase-associated protein [Acidiphilium cryptum JF-5] gi|326402296|ref|YP_004282377.1| hypothetical protein ACMV_01480 [Acidiphilium multivorum AIU301] gi|338991664|ref|ZP_08634493.1| Transglycosylase-associated protein [Acidiphilium sp. PM] gi|146400824|gb|ABQ29351.1| Transglycosylase-associated protein [Acidiphilium cryptum JF-5] gi|325049157|dbj|BAJ79495.1| hypothetical protein ACMV_01480 [Acidiphilium multivorum AIU301] gi|338205406|gb|EGO93713.1| Transglycosylase-associated protein [Acidiphilium sp. PM] Length=84 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/70 (45%), Positives = 51/70 (73%), Gaps = 1/70 (1%) Query 23 LGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFF 82 +G+I++G IAGW+AS+IV GG G ++++V+G+VGA G + ALG GG+ ++ F Sbjct 4 IGFIILGLIAGWIASQIVDNGGKGPILDIVLGIVGALVGGQIFLALGFAPG-GGFLYSLF 62 Query 83 VALGGAVVLL 92 V++ GAV++L Sbjct 63 VSVVGAVIIL 72 >gi|323529824|ref|YP_004231976.1| transglycosylase-associated protein [Burkholderia sp. CCGE1001] gi|323386826|gb|ADX58916.1| Transglycosylase-associated protein [Burkholderia sp. CCGE1001] Length=84 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/78 (43%), Positives = 56/78 (72%), Gaps = 1/78 (1%) Query 23 LGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFF 82 + ++VIG IAGWLA +VKGGG G+++++++G+VGAF G + L + + GG+ + Sbjct 6 IAWLVIGAIAGWLAGVLVKGGGFGLIVDIIVGIVGAFIGGWLARVLHISLG-GGWISSII 64 Query 83 VALGGAVVLLWIVGMVRK 100 A+ GAV+LL+I+ +VR+ Sbjct 65 TAVIGAVILLFIIRLVRR 82 >gi|38234811|ref|NP_940578.1| hypothetical protein DIP2275 [Corynebacterium diphtheriae NCTC 13129] gi|38201075|emb|CAE50799.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length=87 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/72 (48%), Positives = 49/72 (69%), Gaps = 3/72 (4%) Query 32 AGWLASKIVKG--GGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFFVALGGAV 89 AGW+ASKI KG GI +N+++G+VG F G +L+ GVDV GG +F+FF L GAV Sbjct 16 AGWIASKI-KGTDAQQGIGLNIIVGIVGGFLGGWLLSLFGVDVAGGGLFFSFFTCLLGAV 74 Query 90 VLLWIVGMVRKT 101 +L+ +V +V + Sbjct 75 ILISLVQLVTRK 86 >gi|254488204|ref|ZP_05101409.1| transglycosylase-associated protein [Roseobacter sp. GAI101] gi|214045073|gb|EEB85711.1| transglycosylase-associated protein [Roseobacter sp. GAI101] Length=84 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/82 (41%), Positives = 54/82 (66%), Gaps = 2/82 (2%) Query 18 TGIGWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGY 77 TG+GW I++GG+AGW+A KI+K G++MN+++G++GA A +L A+ V GG+ Sbjct 2 TGLGWFAAIIVGGLAGWIAEKIMK-SDMGLIMNIILGIIGAVVANFLLVAI-VGATLGGW 59 Query 78 WFTFFVALGGAVVLLWIVGMVR 99 V + GA +L+W+ +VR Sbjct 60 IGQLVVGVIGACLLIWVTRLVR 81 >gi|187926342|ref|YP_001892687.1| transglycosylase [Ralstonia pickettii 12J] gi|241665829|ref|YP_002984188.1| transglycosylase [Ralstonia pickettii 12D] gi|187728096|gb|ACD29260.1| Transglycosylase-associated protein [Ralstonia pickettii 12J] gi|240867856|gb|ACS65516.1| Transglycosylase-associated protein [Ralstonia pickettii 12D] Length=84 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/81 (41%), Positives = 58/81 (72%), Gaps = 1/81 (1%) Query 21 GWLGYIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFT 80 G + +++IG +AGWLA +VKGGG GI +++V+G+VGAF +G + LG+ + GG+ + Sbjct 5 GLIAWLIIGAVAGWLAGILVKGGGFGIFVDIVVGIVGAFISGWLAGVLGISLG-GGWIGS 63 Query 81 FFVALGGAVVLLWIVGMVRKT 101 A+ GAV+LL+I+ ++++ Sbjct 64 IITAVIGAVILLFIIRLIKRA 84 >gi|330815860|ref|YP_004359565.1| Transglycosylase-associated protein [Burkholderia gladioli BSR3] gi|327368253|gb|AEA59609.1| Transglycosylase-associated protein [Burkholderia gladioli BSR3] Length=83 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/77 (42%), Positives = 55/77 (72%), Gaps = 1/77 (1%) Query 25 YIVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWFTFFVA 84 +++IG IAGWLA +VKGGG G+++++++G+VGA G + LG+ V G++ + VA Sbjct 8 WLIIGAIAGWLAGLLVKGGGFGLIVDIIVGIVGAVIGGWLAGVLGISVGS-GFFASIIVA 66 Query 85 LGGAVVLLWIVGMVRKT 101 + GAV+LL+I+ + R+ Sbjct 67 VIGAVILLFIIRLFRRA 83 >gi|332665191|ref|YP_004447979.1| transglycosylase-associated protein [Haliscomenobacter hydrossis DSM 1100] gi|332334005|gb|AEE51106.1| Transglycosylase-associated protein [Haliscomenobacter hydrossis DSM 1100] Length=83 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/75 (43%), Positives = 52/75 (70%), Gaps = 1/75 (1%) Query 26 IVIGGIAGWLASKIVKGGGSGILMNVVIGVVGAFGAGLVLNALGVDVNHGGYWF-TFFVA 84 ++IG ++GWLA +I+KGGG G+L N+++G+VG+F G V N L + +N G T + Sbjct 7 LIIGAVSGWLAGQIMKGGGFGLLWNIILGIVGSFVGGWVFNMLNISLNVGSATVNTIIQS 66 Query 85 LGGAVVLLWIVGMVR 99 + GAVV+L++ G+ R Sbjct 67 VIGAVVVLFVAGLFR 81 Lambda K H 0.325 0.146 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 128767090968 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40