BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1863c
Length=256
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609000|ref|NP_216379.1| integral membrane protein [Mycobact... 488 3e-136
gi|289753956|ref|ZP_06513334.1| integral membrane protein [Mycob... 488 5e-136
gi|339294799|gb|AEJ46910.1| integral membrane protein [Mycobacte... 444 7e-123
gi|308231962|ref|ZP_07663961.1| conserved membrane protein [Myco... 444 8e-123
gi|183982746|ref|YP_001851037.1| hypothetical protein MMAR_2740 ... 403 1e-110
gi|289762012|ref|ZP_06521390.1| conserved integral membrane prot... 385 2e-105
gi|126435401|ref|YP_001071092.1| abortive infection protein [Myc... 379 2e-103
gi|145223928|ref|YP_001134606.1| abortive infection protein [Myc... 371 6e-101
gi|240173353|ref|ZP_04752011.1| hypothetical protein MkanA1_2883... 369 3e-100
gi|296164854|ref|ZP_06847411.1| abortive infection protein [Myco... 367 1e-99
gi|118473489|ref|YP_887915.1| integral membrane protein [Mycobac... 363 1e-98
gi|342861240|ref|ZP_08717888.1| hypothetical protein MCOL_20251 ... 361 6e-98
gi|120404049|ref|YP_953878.1| abortive infection protein [Mycoba... 359 2e-97
gi|108799760|ref|YP_639957.1| abortive infection protein [Mycoba... 353 2e-95
gi|315444260|ref|YP_004077139.1| CAAX amino terminal protease fa... 337 7e-91
gi|254819330|ref|ZP_05224331.1| caax amino protease family prote... 328 6e-88
gi|118464072|ref|YP_882042.1| caax amino protease [Mycobacterium... 320 1e-85
gi|41407670|ref|NP_960506.1| hypothetical protein MAP1572c [Myco... 318 4e-85
gi|333990591|ref|YP_004523205.1| hypothetical protein JDM601_195... 310 1e-82
gi|229493939|ref|ZP_04387711.1| putative conserved integral memb... 296 3e-78
gi|226307692|ref|YP_002767652.1| hypothetical protein RER_42050 ... 294 9e-78
gi|169627601|ref|YP_001701250.1| hypothetical protein MAB_0497 [... 293 2e-77
gi|226365371|ref|YP_002783154.1| hypothetical protein ROP_59620 ... 280 2e-73
gi|54022714|ref|YP_116956.1| putative protease [Nocardia farcini... 268 5e-70
gi|296140747|ref|YP_003647990.1| hypothetical protein Tpau_3058 ... 267 1e-69
gi|336457508|gb|EGO36514.1| CAAX amino terminal protease family ... 264 1e-68
gi|111022863|ref|YP_705835.1| protease [Rhodococcus jostii RHA1]... 254 9e-66
gi|312138789|ref|YP_004006125.1| peptidase [Rhodococcus equi 103... 241 6e-62
gi|262202625|ref|YP_003273833.1| abortive infection protein [Gor... 191 7e-47
gi|319949528|ref|ZP_08023578.1| hypothetical protein ES5_08761 [... 186 3e-45
gi|343928507|ref|ZP_08767955.1| hypothetical protein GOALK_117_0... 177 2e-42
gi|334564879|ref|ZP_08517870.1| hypothetical protein CbovD2_0992... 173 2e-41
gi|340793087|ref|YP_004758550.1| hypothetical protein CVAR_0130 ... 172 6e-41
gi|25026639|ref|NP_736693.1| hypothetical protein CE0083 [Coryne... 159 5e-37
gi|326382317|ref|ZP_08204009.1| hypothetical protein SCNU_05226 ... 157 1e-36
gi|291299925|ref|YP_003511203.1| abortive infection protein [Sta... 134 1e-29
gi|317123255|ref|YP_004097367.1| hypothetical protein Intca_0078... 115 6e-24
gi|258652201|ref|YP_003201357.1| abortive infection protein [Nak... 111 1e-22
gi|258655334|ref|YP_003204490.1| abortive infection protein [Nak... 99.8 4e-19
gi|271962778|ref|YP_003336974.1| hypothetical protein Sros_1233 ... 85.5 7e-15
gi|331696637|ref|YP_004332876.1| abortive infection protein [Pse... 81.3 1e-13
gi|111021808|ref|YP_704780.1| protease [Rhodococcus jostii RHA1]... 80.9 2e-13
gi|258655165|ref|YP_003204321.1| abortive infection protein [Nak... 80.5 2e-13
gi|284990802|ref|YP_003409356.1| abortive infection protein [Geo... 77.8 1e-12
gi|226364331|ref|YP_002782113.1| hypothetical protein ROP_49210 ... 76.6 4e-12
gi|145222224|ref|YP_001132902.1| abortive infection protein [Myc... 71.2 2e-10
gi|229488497|ref|ZP_04382363.1| abortive infection protein [Rhod... 68.2 1e-09
gi|296268636|ref|YP_003651268.1| abortive infection protein [The... 65.5 7e-09
gi|108801507|ref|YP_641704.1| abortive infection protein [Mycoba... 63.5 3e-08
gi|226308317|ref|YP_002768277.1| hypothetical protein RER_48300 ... 62.8 4e-08
>gi|15609000|ref|NP_216379.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
gi|15841332|ref|NP_336369.1| hypothetical protein MT1912 [Mycobacterium tuberculosis CDC1551]
gi|31793053|ref|NP_855546.1| integral membrane protein [Mycobacterium bovis AF2122/97]
50 more sequence titles
Length=256
Score = 488 bits (1257), Expect = 3e-136, Method: Compositional matrix adjust.
Identities = 256/256 (100%), Positives = 256/256 (100%), Gaps = 0/256 (0%)
Query 1 MSDHLTACAAVHPGPLVSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPA 60
MSDHLTACAAVHPGPLVSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPA
Sbjct 1 MSDHLTACAAVHPGPLVSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPA 60
Query 61 AAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNH 120
AAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNH
Sbjct 61 AAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNH 120
Query 121 HYATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIAT 180
HYATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIAT
Sbjct 121 HYATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIAT 180
Query 181 SLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSL 240
SLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSL
Sbjct 181 SLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSL 240
Query 241 NGMGALAAALVWHLST 256
NGMGALAAALVWHLST
Sbjct 241 NGMGALAAALVWHLST 256
>gi|289753956|ref|ZP_06513334.1| integral membrane protein [Mycobacterium tuberculosis EAS054]
gi|289694543|gb|EFD61972.1| integral membrane protein [Mycobacterium tuberculosis EAS054]
Length=256
Score = 488 bits (1255), Expect = 5e-136, Method: Compositional matrix adjust.
Identities = 255/256 (99%), Positives = 256/256 (100%), Gaps = 0/256 (0%)
Query 1 MSDHLTACAAVHPGPLVSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPA 60
MSDHLTACAAVHPGPLVSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPA
Sbjct 1 MSDHLTACAAVHPGPLVSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPA 60
Query 61 AAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNH 120
AAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNH
Sbjct 61 AAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNH 120
Query 121 HYATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIAT 180
HYATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIAT
Sbjct 121 HYATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIAT 180
Query 181 SLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSL 240
SLG+TSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSL
Sbjct 181 SLGITSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSL 240
Query 241 NGMGALAAALVWHLST 256
NGMGALAAALVWHLST
Sbjct 241 NGMGALAAALVWHLST 256
>gi|339294799|gb|AEJ46910.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
gi|339298425|gb|AEJ50535.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
Length=235
Score = 444 bits (1142), Expect = 7e-123, Method: Compositional matrix adjust.
Identities = 234/235 (99%), Positives = 235/235 (100%), Gaps = 0/235 (0%)
Query 22 VMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGL 81
+MHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGL
Sbjct 1 MMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGL 60
Query 82 SRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTV 141
SRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTV
Sbjct 61 SRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTV 120
Query 142 IPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIG 201
IPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIG
Sbjct 121 IPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIG 180
Query 202 LVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLST 256
LVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLST
Sbjct 181 LVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLST 235
>gi|308231962|ref|ZP_07663961.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|308369543|ref|ZP_07666749.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308370841|ref|ZP_07667025.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
19 more sequence titles
Length=234
Score = 444 bits (1141), Expect = 8e-123, Method: Compositional matrix adjust.
Identities = 234/234 (100%), Positives = 234/234 (100%), Gaps = 0/234 (0%)
Query 23 MHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLS 82
MHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLS
Sbjct 1 MHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLS 60
Query 83 RQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTVI 142
RQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTVI
Sbjct 61 RQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTVI 120
Query 143 PEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGL 202
PEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGL
Sbjct 121 PEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGL 180
Query 203 VAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLST 256
VAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLST
Sbjct 181 VAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLST 234
>gi|183982746|ref|YP_001851037.1| hypothetical protein MMAR_2740 [Mycobacterium marinum M]
gi|183176072|gb|ACC41182.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=254
Score = 403 bits (1035), Expect = 1e-110, Method: Compositional matrix adjust.
Identities = 218/256 (86%), Positives = 239/256 (94%), Gaps = 2/256 (0%)
Query 1 MSDHLTACAAVHPGPLVSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPA 60
M DH A A HP PLV+ LS +HR RI++D+AVVV+VLVLTNLIAHFTTPWASIATVPA
Sbjct 1 MRDH--ATTAPHPDPLVTQLSALHRLRIHLDVAVVVVVLVLTNLIAHFTTPWASIATVPA 58
Query 61 AAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNH 120
AAVGLVILVRSRGLGWAELGL R+HW+SG+ YALAAV LVV VIS GVLLP+TRPMFMN+
Sbjct 59 AAVGLVILVRSRGLGWAELGLGREHWRSGMFYALAAVGLVVLVISAGVLLPMTRPMFMNN 118
Query 121 HYATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIAT 180
HYAT+SGAVIASMV+IPLQTVIPEELAFRGVLHGALNRAWGFRGVA+AGS+LFGLWH+AT
Sbjct 119 HYATVSGAVIASMVIIPLQTVIPEELAFRGVLHGALNRAWGFRGVALAGSLLFGLWHVAT 178
Query 181 SLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSL 240
SLGLTSSNVGFTRLFGGGI+G+VAGV+LAVLATG AGFVFSWLRRRSGSLIAPIALHWSL
Sbjct 179 SLGLTSSNVGFTRLFGGGIVGMVAGVVLAVLATGAAGFVFSWLRRRSGSLIAPIALHWSL 238
Query 241 NGMGALAAALVWHLST 256
NG+GALAAA+VWHLS
Sbjct 239 NGVGALAAAVVWHLSN 254
>gi|289762012|ref|ZP_06521390.1| conserved integral membrane protein [Mycobacterium tuberculosis
GM 1503]
gi|289709518|gb|EFD73534.1| conserved integral membrane protein [Mycobacterium tuberculosis
GM 1503]
Length=256
Score = 385 bits (990), Expect = 2e-105, Method: Compositional matrix adjust.
Identities = 231/267 (87%), Positives = 232/267 (87%), Gaps = 22/267 (8%)
Query 1 MSDHLTACAAVHPGPLVSHLS--------VMHRFR---IYVDIAVVVLVLVLTNLIAHFT 49
MSDHLTACAAVHPGPLVSHLS HR R D + H T
Sbjct 1 MSDHLTACAAVHPGPLVSHLSGDAPVPDICRHRRRRPGAGTD---------EPDRAFHHT 51
Query 50 TPWASIATVPAAAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVL 109
ASIATVPAAAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVL
Sbjct 52 V--ASIATVPAAAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVL 109
Query 110 LPITRPMFMNHHYATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAG 169
LPITRPMFMNHHYATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAG
Sbjct 110 LPITRPMFMNHHYATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAG 169
Query 170 SVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGS 229
SVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGS
Sbjct 170 SVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGS 229
Query 230 LIAPIALHWSLNGMGALAAALVWHLST 256
LIAPIALHWSLNGMGALAAALVWHLST
Sbjct 230 LIAPIALHWSLNGMGALAAALVWHLST 256
>gi|126435401|ref|YP_001071092.1| abortive infection protein [Mycobacterium sp. JLS]
gi|126235201|gb|ABN98601.1| Abortive infection protein [Mycobacterium sp. JLS]
Length=244
Score = 379 bits (974), Expect = 2e-103, Method: Compositional matrix adjust.
Identities = 197/246 (81%), Positives = 221/246 (90%), Gaps = 5/246 (2%)
Query 10 AVHPGPLVSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILV 69
AVH P S M R R+Y+DIA+VV VL TNLIAHFTTPWASIATVPAAAVGL+ILV
Sbjct 3 AVHAQP-----STMPRMRVYLDIAIVVAVLAATNLIAHFTTPWASIATVPAAAVGLLILV 57
Query 70 RSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAV 129
R RGL W ELGL R+HW+SG YALAAVA+V++VI+VG+LLP TRPMFMN++YATISGA+
Sbjct 58 RRRGLCWTELGLGREHWRSGAGYALAAVAVVLSVIAVGLLLPWTRPMFMNNNYATISGAL 117
Query 130 IASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNV 189
IASMV+IPLQTVIPEELAFRGVLHGALNRAWGFRGVA AGS+LFGLWHIATSLGLTSSNV
Sbjct 118 IASMVVIPLQTVIPEELAFRGVLHGALNRAWGFRGVAAAGSLLFGLWHIATSLGLTSSNV 177
Query 190 GFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAA 249
G TRLFGGG++G V GV+LAV+ATG+AGFVF+WLR+RSGSL+APIALHWSLNGMGALAAA
Sbjct 178 GLTRLFGGGVLGTVIGVVLAVVATGIAGFVFTWLRKRSGSLLAPIALHWSLNGMGALAAA 237
Query 250 LVWHLS 255
LVW LS
Sbjct 238 LVWQLS 243
>gi|145223928|ref|YP_001134606.1| abortive infection protein [Mycobacterium gilvum PYR-GCK]
gi|145216414|gb|ABP45818.1| Abortive infection protein [Mycobacterium gilvum PYR-GCK]
Length=253
Score = 371 bits (952), Expect = 6e-101, Method: Compositional matrix adjust.
Identities = 187/255 (74%), Positives = 223/255 (88%), Gaps = 2/255 (0%)
Query 1 MSDHLTACAAVHPGPLVSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPA 60
MSD + A P PL + LS + FR+YVDIA+VV+VL L+NL+AHFTTPWA++A +PA
Sbjct 1 MSDAVAAPP--EPHPLAAQLSALQHFRLYVDIAIVVVVLALSNLLAHFTTPWANVAVIPA 58
Query 61 AAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNH 120
AAVGL+ +VRSRGLGW+ELGL R+HW+SG YAL AVALV VI++G LLP TRPMF+N+
Sbjct 59 AAVGLLFMVRSRGLGWSELGLGREHWRSGAGYALGAVALVGTVIAIGALLPWTRPMFLNN 118
Query 121 HYATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIAT 180
+YAT+SGA+IASM++IPLQTVIPEELAFRGVLHGAL +AWG+RGVA AGS+LFGLWHIAT
Sbjct 119 NYATLSGALIASMIIIPLQTVIPEELAFRGVLHGALEQAWGWRGVAAAGSLLFGLWHIAT 178
Query 181 SLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSL 240
SLGLT+SN GFT++ GGG+ G+VAGV+ AV+AT AGFVFSWLRRRSGSLIAPIALHWSL
Sbjct 179 SLGLTASNAGFTKILGGGVFGMVAGVVGAVIATAAAGFVFSWLRRRSGSLIAPIALHWSL 238
Query 241 NGMGALAAALVWHLS 255
NG+GALAAALVWHLS
Sbjct 239 NGLGALAAALVWHLS 253
>gi|240173353|ref|ZP_04752011.1| hypothetical protein MkanA1_28831 [Mycobacterium kansasii ATCC
12478]
Length=258
Score = 369 bits (946), Expect = 3e-100, Method: Compositional matrix adjust.
Identities = 196/234 (84%), Positives = 225/234 (97%), Gaps = 0/234 (0%)
Query 23 MHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLS 82
+ R RI+VDIAVVV+VLVLTNL+AHFTTPWASIATVPAAA+GL+ILVR RGLGW ELGL
Sbjct 25 LERLRIHVDIAVVVVVLVLTNLVAHFTTPWASIATVPAAALGLLILVRWRGLGWTELGLG 84
Query 83 RQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTVI 142
RQHW+SG+ YALAAVA+V++VI+VGVL+P+TRPMF+N+ YAT+SGA+IASM++IPLQTVI
Sbjct 85 RQHWRSGMGYALAAVAVVLSVIAVGVLVPVTRPMFLNNRYATVSGALIASMLVIPLQTVI 144
Query 143 PEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGL 202
PEELAFRGVLHGALNRAWGFRGVA+AGS+LFGLWH+ATSLGLTS+NVGFTRLFGGGI+G+
Sbjct 145 PEELAFRGVLHGALNRAWGFRGVAMAGSLLFGLWHVATSLGLTSTNVGFTRLFGGGIVGM 204
Query 203 VAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLST 256
+AGV LAVLATG AGFVFSWLRRRSGSLIAPIALHWSLNG+GALAAA+VWHLST
Sbjct 205 LAGVTLAVLATGAAGFVFSWLRRRSGSLIAPIALHWSLNGLGALAAAVVWHLST 258
>gi|296164854|ref|ZP_06847411.1| abortive infection protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295899793|gb|EFG79242.1| abortive infection protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=254
Score = 367 bits (941), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 193/241 (81%), Positives = 220/241 (92%), Gaps = 0/241 (0%)
Query 15 PLVSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGL 74
P++S LS +HR RI++DIAVVV VLV TNLIAHFTTPWASI VPAAAVGLV L+R+ GL
Sbjct 13 PVISQLSALHRVRIHLDIAVVVAVLVTTNLIAHFTTPWASIGVVPAAAVGLVFLMRANGL 72
Query 75 GWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMV 134
WA+LGL R+HWKSGL YALAAV LV +VI+ GVLLP+TRPMF+NH YAT+SGA+IASMV
Sbjct 73 DWADLGLGREHWKSGLGYALAAVLLVASVIAAGVLLPMTRPMFLNHRYATVSGALIASMV 132
Query 135 MIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRL 194
+IPLQTVIPEELAFRGVLHGAL+RAWGFRGVA+AGS+LFGLWH+ATSLGLTS NVG TR+
Sbjct 133 IIPLQTVIPEELAFRGVLHGALHRAWGFRGVALAGSLLFGLWHVATSLGLTSGNVGLTRI 192
Query 195 FGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHL 254
FGGG++G++AGV AVLATG AGFVFSWLRRRSGSLIAPIALHWSLNG+GALAAALVWHL
Sbjct 193 FGGGVMGMLAGVTAAVLATGAAGFVFSWLRRRSGSLIAPIALHWSLNGLGALAAALVWHL 252
Query 255 S 255
+
Sbjct 253 T 253
>gi|118473489|ref|YP_887915.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155]
gi|118174776|gb|ABK75672.1| probable conserved integral membrane protein [Mycobacterium smegmatis
str. MC2 155]
Length=249
Score = 363 bits (932), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 198/248 (80%), Positives = 229/248 (93%), Gaps = 0/248 (0%)
Query 9 AAVHPGPLVSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVIL 68
AA HP PL++ L+ +H FRIYVDIA+VV+VL +TNLIAHFTTPWASIATVPAAAVGL+ L
Sbjct 2 AAQHPHPLMAQLAALHHFRIYVDIAIVVVVLAMTNLIAHFTTPWASIATVPAAAVGLLAL 61
Query 69 VRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGA 128
R+RG GW ELGL R+HWK+G YALAAV +V++VI++G LLP TRPMFMN +YAT+SGA
Sbjct 62 ARARGWGWTELGLGREHWKTGAGYALAAVGVVLSVIAIGALLPWTRPMFMNDNYATLSGA 121
Query 129 VIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSN 188
+IASM++IPLQTVIPEELAFRGVLHGAL+RAWGFRGVA AGS+LFG+WHIATSLGLTSSN
Sbjct 122 LIASMIIIPLQTVIPEELAFRGVLHGALDRAWGFRGVAAAGSLLFGMWHIATSLGLTSSN 181
Query 189 VGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAA 248
VGFTRLFGGGI+G VAGV+LAV+ATG+AGFVFSWLRRRSGSL+APIALHWSLNGMGALAA
Sbjct 182 VGFTRLFGGGILGTVAGVVLAVVATGIAGFVFSWLRRRSGSLLAPIALHWSLNGMGALAA 241
Query 249 ALVWHLST 256
A+VWH+ST
Sbjct 242 AVVWHIST 249
>gi|342861240|ref|ZP_08717888.1| hypothetical protein MCOL_20251 [Mycobacterium colombiense CECT
3035]
gi|342131140|gb|EGT84421.1| hypothetical protein MCOL_20251 [Mycobacterium colombiense CECT
3035]
Length=253
Score = 361 bits (926), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 203/252 (81%), Positives = 229/252 (91%), Gaps = 0/252 (0%)
Query 5 LTACAAVHPGPLVSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVG 64
L A P S LS +HRFRI++DIAVVV+VLVLTNLIAHFTTPWASIATVPAAAVG
Sbjct 2 LDATGTADIQPATSQLSALHRFRIHLDIAVVVVVLVLTNLIAHFTTPWASIATVPAAAVG 61
Query 65 LVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYAT 124
LV+L+R RGL WA+LGL R+HWK G+ YA+AAVA+V +VI+VGVLLP TRP+F+N+ YAT
Sbjct 62 LVVLMRWRGLAWADLGLGREHWKPGMGYAVAAVAVVASVIAVGVLLPETRPLFLNNRYAT 121
Query 125 ISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGL 184
ISGA+IASMV+IPLQTVIPEELAFRGVLHGALNRAWGFRGVA+AGS+LFGLWH+ATSLGL
Sbjct 122 ISGAMIASMVVIPLQTVIPEELAFRGVLHGALNRAWGFRGVALAGSLLFGLWHVATSLGL 181
Query 185 TSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMG 244
TS+NVGFTRLFGGGI+G++AGV AVLATG AGFVFSWLRRRSGSLIAPIALHWSLNG+G
Sbjct 182 TSTNVGFTRLFGGGIVGMMAGVTGAVLATGAAGFVFSWLRRRSGSLIAPIALHWSLNGLG 241
Query 245 ALAAALVWHLST 256
ALAAALVWHLST
Sbjct 242 ALAAALVWHLST 253
>gi|120404049|ref|YP_953878.1| abortive infection protein [Mycobacterium vanbaalenii PYR-1]
gi|119956867|gb|ABM13872.1| Abortive infection protein [Mycobacterium vanbaalenii PYR-1]
Length=253
Score = 359 bits (922), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 195/255 (77%), Positives = 227/255 (90%), Gaps = 2/255 (0%)
Query 1 MSDHLTACAAVHPGPLVSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPA 60
MSD + A HP + HLS +H FRIYVDIA+VV+VL LTNL+AHFTTPWA+IA VPA
Sbjct 1 MSDAIAAPVEHHP--WMGHLSALHHFRIYVDIAIVVVVLALTNLLAHFTTPWANIAVVPA 58
Query 61 AAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNH 120
AAVGL++LVRSRGLGW+ELGL R+HWKSG YAL AVALV VI+VGVLLP+TRPMF+N
Sbjct 59 AAVGLLLLVRSRGLGWSELGLGREHWKSGAGYALGAVALVGTVIAVGVLLPVTRPMFLND 118
Query 121 HYATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIAT 180
+YAT+SGA++ASM++IPLQTVIPEELAFRGVLHGAL+RAWG+RGVA AGS+LFGLWHIAT
Sbjct 119 NYATLSGALVASMIIIPLQTVIPEELAFRGVLHGALDRAWGWRGVAAAGSLLFGLWHIAT 178
Query 181 SLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSL 240
SLGLT+SNVGFT++ GGG+ G+V GV+ AV+AT AGFVF+WLRRRSGSLIAPIALHWSL
Sbjct 179 SLGLTASNVGFTKILGGGVFGMVVGVVGAVIATAAAGFVFTWLRRRSGSLIAPIALHWSL 238
Query 241 NGMGALAAALVWHLS 255
NG+GALAAALVWHLS
Sbjct 239 NGLGALAAALVWHLS 253
>gi|108799760|ref|YP_639957.1| abortive infection protein [Mycobacterium sp. MCS]
gi|119868870|ref|YP_938822.1| abortive infection protein [Mycobacterium sp. KMS]
gi|108770179|gb|ABG08901.1| Abortive infection protein [Mycobacterium sp. MCS]
gi|119694959|gb|ABL92032.1| Abortive infection protein [Mycobacterium sp. KMS]
Length=244
Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 198/246 (81%), Positives = 221/246 (90%), Gaps = 5/246 (2%)
Query 10 AVHPGPLVSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILV 69
AVH P S M R R+Y+DIA+VV VL TNLIAHFTTPWASIATVPAAAVGL+ILV
Sbjct 3 AVHAQP-----STMPRMRVYLDIAIVVAVLAATNLIAHFTTPWASIATVPAAAVGLLILV 57
Query 70 RSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAV 129
R RGL W ELGL R+HW+SG YALAAVA+VV+VI+VG+LLP TRPMFMN++YATISGA+
Sbjct 58 RRRGLCWTELGLGREHWRSGAGYALAAVAVVVSVIAVGLLLPWTRPMFMNNNYATISGAL 117
Query 130 IASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNV 189
IASMV+IPLQTVIPEELAFRGVLHGALNRAWGFRGVA AGS+LFGLWHIATSLGLTSSNV
Sbjct 118 IASMVVIPLQTVIPEELAFRGVLHGALNRAWGFRGVAAAGSLLFGLWHIATSLGLTSSNV 177
Query 190 GFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAA 249
G TRLFGGG++G V GV+LAV+ATG+AGFVF+WLR+RSGSL+APIALHWSLNGMGALAAA
Sbjct 178 GLTRLFGGGVLGTVIGVVLAVVATGIAGFVFTWLRKRSGSLLAPIALHWSLNGMGALAAA 237
Query 250 LVWHLS 255
LVW LS
Sbjct 238 LVWQLS 243
>gi|315444260|ref|YP_004077139.1| CAAX amino terminal protease family [Mycobacterium sp. Spyr1]
gi|315262563|gb|ADT99304.1| CAAX amino terminal protease family [Mycobacterium sp. Spyr1]
Length=253
Score = 337 bits (865), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 186/255 (73%), Positives = 221/255 (87%), Gaps = 2/255 (0%)
Query 1 MSDHLTACAAVHPGPLVSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPA 60
MSD A P PL + LS + FR+YVDIA+VV+VL L+NL+AHFTTPWA++A +PA
Sbjct 1 MSD--AVAAPPEPHPLAAQLSALQHFRLYVDIAIVVVVLALSNLLAHFTTPWANVAAIPA 58
Query 61 AAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNH 120
AAVGL+ +VRSRGLGW+ELGL R+HW+SG YAL AVALV VI++G LLP TRPMF+N+
Sbjct 59 AAVGLLFMVRSRGLGWSELGLGREHWRSGAGYALGAVALVGTVIAIGALLPWTRPMFLNN 118
Query 121 HYATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIAT 180
+YAT+SGA+IASM++IPLQTVIPEELAFRGVLHGAL +AWG+RGVA AGS+LFGLWHIAT
Sbjct 119 NYATLSGALIASMIIIPLQTVIPEELAFRGVLHGALEQAWGWRGVAAAGSLLFGLWHIAT 178
Query 181 SLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSL 240
SLGLT+SN GFT++ GGG+ G+VAGV+ AV+AT AGFVFSWLRRRSGSLIAPIALHWSL
Sbjct 179 SLGLTASNAGFTKILGGGVFGMVAGVVGAVIATAAAGFVFSWLRRRSGSLIAPIALHWSL 238
Query 241 NGMGALAAALVWHLS 255
NG+GALAAAL WHLS
Sbjct 239 NGLGALAAALAWHLS 253
>gi|254819330|ref|ZP_05224331.1| caax amino protease family protein [Mycobacterium intracellulare
ATCC 13950]
Length=241
Score = 328 bits (840), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 198/241 (83%), Positives = 223/241 (93%), Gaps = 0/241 (0%)
Query 16 LVSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLG 75
+ S S +HRFRI++DI VVV+VLVLT+LIAHFTTPWAS+ TVPAAAVGLVIL+R RGLG
Sbjct 1 MASQPSALHRFRIHLDIGVVVVVLVLTDLIAHFTTPWASVGTVPAAAVGLVILMRCRGLG 60
Query 76 WAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVM 135
WA+LGL R+HWK GL YALAAVA+V +VI+VGVLLP TRPMF+N+ YATISGA++ASMV+
Sbjct 61 WADLGLGREHWKPGLGYALAAVAVVASVIAVGVLLPATRPMFLNNRYATISGAMVASMVI 120
Query 136 IPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLF 195
IPLQTVIPEELAFRGVLHGALNRAWGFRGVA+AGS+LFGLWH+ATS GLTSSNVGFTRLF
Sbjct 121 IPLQTVIPEELAFRGVLHGALNRAWGFRGVALAGSLLFGLWHVATSFGLTSSNVGFTRLF 180
Query 196 GGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLS 255
GGGI+G+VAGV AV+ATG AGFVFSWLRRRSGSLIAPIALHWSLNG+GALAAA VWHLS
Sbjct 181 GGGIVGMVAGVAGAVVATGAAGFVFSWLRRRSGSLIAPIALHWSLNGLGALAAAFVWHLS 240
Query 256 T 256
T
Sbjct 241 T 241
>gi|118464072|ref|YP_882042.1| caax amino protease [Mycobacterium avium 104]
gi|254775332|ref|ZP_05216848.1| caax amino protease family protein [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118165359|gb|ABK66256.1| caax amino protease family protein [Mycobacterium avium 104]
Length=251
Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 196/234 (84%), Positives = 219/234 (94%), Gaps = 0/234 (0%)
Query 23 MHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLS 82
+HRFRI++DIAVVV+VLVLTNL+AHFTTPWASI TVPAAAVGLVIL+R RGLGW +LGL
Sbjct 18 LHRFRIHLDIAVVVVVLVLTNLVAHFTTPWASIGTVPAAAVGLVILMRYRGLGWTDLGLG 77
Query 83 RQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTVI 142
R HWKSG+ YALAAVA+V AVI++GVLLP TRPMFMN+ YATISGA+IASMV+IP+QTVI
Sbjct 78 RDHWKSGVGYALAAVAVVAAVIAIGVLLPATRPMFMNNRYATISGAMIASMVVIPVQTVI 137
Query 143 PEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGL 202
PEELAFRGVLHGALNRAWGFRGVA+AGS+LFGLWH+ATS GLTS NVGFTRLFGGG++G+
Sbjct 138 PEELAFRGVLHGALNRAWGFRGVALAGSLLFGLWHVATSFGLTSGNVGFTRLFGGGMVGM 197
Query 203 VAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLST 256
+AGV AVLATG AGFVFSWLRRRSGSLIAPIALHWSLNG+GALAAA VWHLST
Sbjct 198 MAGVTGAVLATGAAGFVFSWLRRRSGSLIAPIALHWSLNGLGALAAAFVWHLST 251
>gi|41407670|ref|NP_960506.1| hypothetical protein MAP1572c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396023|gb|AAS03889.1| hypothetical protein MAP_1572c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=251
Score = 318 bits (816), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 196/234 (84%), Positives = 219/234 (94%), Gaps = 0/234 (0%)
Query 23 MHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLS 82
+HRFRI++DIAVVV+VLVLTNL+AHFTTPWASI TVPAAAVGLVIL+R RGLGWA+LGL
Sbjct 18 LHRFRIHLDIAVVVVVLVLTNLVAHFTTPWASIGTVPAAAVGLVILMRYRGLGWADLGLG 77
Query 83 RQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTVI 142
R HWKSG+ YALAAVA+V AVI++GVLLP TRPMFMN+ YATISGA+IASMV+IP+QTVI
Sbjct 78 RDHWKSGVGYALAAVAVVAAVIAIGVLLPATRPMFMNNRYATISGAMIASMVVIPVQTVI 137
Query 143 PEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGL 202
PEELAFRGVLHGALNRAWGFRGVA+AGS+LFGLWH+ATS GLTS NVGFTRLFGGG++G+
Sbjct 138 PEELAFRGVLHGALNRAWGFRGVALAGSLLFGLWHVATSFGLTSGNVGFTRLFGGGMVGM 197
Query 203 VAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLST 256
+AGV AVLATG AGFVFSW RRRSGSLIAPIALHWSLNG+GALAAA VWHLST
Sbjct 198 MAGVTGAVLATGAAGFVFSWPRRRSGSLIAPIALHWSLNGLGALAAAFVWHLST 251
>gi|333990591|ref|YP_004523205.1| hypothetical protein JDM601_1951 [Mycobacterium sp. JDM601]
gi|333486559|gb|AEF35951.1| integral membrane protein [Mycobacterium sp. JDM601]
Length=240
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 189/239 (80%), Positives = 217/239 (91%), Gaps = 0/239 (0%)
Query 17 VSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGW 76
+S L+ +++FR +VD+AVVV+VLV+ NL+AHFTTPWA++ATVPA AVGLV LVR GL W
Sbjct 1 MSQLAALNQFRAFVDVAVVVVVLVMANLVAHFTTPWAAVATVPAVAVGLVALVRCNGLSW 60
Query 77 AELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMI 136
AELGL R HWKSG+ YA AAV +VV+VI+VG LLP TRPMF+N+HYAT+SGAV+ASM++I
Sbjct 61 AELGLGRAHWKSGVGYAAAAVLVVVSVIAVGALLPWTRPMFLNNHYATLSGAVVASMLVI 120
Query 137 PLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFG 196
PLQTVIPEELAFRG LHGAL+RAWGFRGVA AGS+LFGLWH+ATSLGLTSSNVGFTRLFG
Sbjct 121 PLQTVIPEELAFRGALHGALHRAWGFRGVAAAGSLLFGLWHVATSLGLTSSNVGFTRLFG 180
Query 197 GGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLS 255
GG +G+VAGV LAVLATG AGFVFSWLRRRSGSLIAPIALHWSLNG+GALAAALVW LS
Sbjct 181 GGFLGMVAGVTLAVLATGAAGFVFSWLRRRSGSLIAPIALHWSLNGVGALAAALVWQLS 239
>gi|229493939|ref|ZP_04387711.1| putative conserved integral membrane protein [Rhodococcus erythropolis
SK121]
gi|229319216|gb|EEN85065.1| putative conserved integral membrane protein [Rhodococcus erythropolis
SK121]
Length=244
Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 162/229 (71%), Positives = 188/229 (83%), Gaps = 0/229 (0%)
Query 25 RFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLSRQ 84
R YVDIAVV++VLV TNLIAHFTT WASIATVP +A+ L+ L + RG+GWAELGLS +
Sbjct 12 RMHAYVDIAVVIVVLVGTNLIAHFTTAWASIATVPISALVLLALTKRRGMGWAELGLSPR 71
Query 85 HWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTVIPE 144
+ G YALAAV LV+ V++VG LLP+TRP FM YATISGA+IASM++IPLQTVIPE
Sbjct 72 DLRRGSKYALAAVGLVLTVVAVGALLPLTRPFFMADRYATISGAIIASMIVIPLQTVIPE 131
Query 145 ELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGLVA 204
ELAFRGVLHG LNR GFRGVA AGS++FGLWHIA+S+GLTS N G + G G++G VA
Sbjct 132 ELAFRGVLHGTLNRVSGFRGVAAAGSLMFGLWHIASSMGLTSGNEGLSGFLGTGVVGQVA 191
Query 205 GVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWH 253
G++ AVLAT AG VF+WLR RSGSLIAPIALHWSLNG GALAAALVWH
Sbjct 192 GILGAVLATAAAGLVFTWLRHRSGSLIAPIALHWSLNGAGALAAALVWH 240
>gi|226307692|ref|YP_002767652.1| hypothetical protein RER_42050 [Rhodococcus erythropolis PR4]
gi|226186809|dbj|BAH34913.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
PR4]
Length=232
Score = 294 bits (752), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 161/225 (72%), Positives = 187/225 (84%), Gaps = 0/225 (0%)
Query 29 YVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLSRQHWKS 88
YVDIAVV++VLV TNLIAHFTT WASIATVP +A+ L+ L + RG+GWAELGLS + +
Sbjct 4 YVDIAVVIVVLVGTNLIAHFTTAWASIATVPISALVLLALTKRRGMGWAELGLSPRDLRR 63
Query 89 GLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTVIPEELAF 148
G YALAAV LV+ V++VG LLP+TRP FM YATISGA+IASM++IPLQTVIPEELAF
Sbjct 64 GSKYALAAVGLVLTVVAVGALLPLTRPFFMADRYATISGAIIASMIVIPLQTVIPEELAF 123
Query 149 RGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGLVAGVML 208
RGVLHG LNR GFRGVA AGS++FGLWHIA+S+GLTS N G + G G++G VAG++
Sbjct 124 RGVLHGTLNRVSGFRGVAAAGSLMFGLWHIASSMGLTSGNEGLSGFLGTGVVGQVAGILG 183
Query 209 AVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWH 253
AVLAT AG VF+WLR RSGSLIAPIALHWSLNG GALAAALVWH
Sbjct 184 AVLATAAAGLVFTWLRHRSGSLIAPIALHWSLNGAGALAAALVWH 228
>gi|169627601|ref|YP_001701250.1| hypothetical protein MAB_0497 [Mycobacterium abscessus ATCC 19977]
gi|169239568|emb|CAM60596.1| Conserved hypothetical protein (abortive infection protein?)
[Mycobacterium abscessus]
Length=248
Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 167/239 (70%), Positives = 192/239 (81%), Gaps = 1/239 (0%)
Query 17 VSHLSVMHRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGW 76
V+ L + R Y+DIAVVV VLV TNLIAHFTTPWA+ VP AA+GL+ L+R RG W
Sbjct 9 VAPLHGLRDVRTYIDIAVVVAVLVATNLIAHFTTPWANFVVVPIAAIGLLALIRYRGHSW 68
Query 77 AELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYAT-ISGAVIASMVM 135
AELGL R HW+SG YA AV +V AVI +G+LLPITRPMF+N YAT +SGA++AS V+
Sbjct 69 AELGLGRDHWRSGAKYAAVAVVIVGAVIGIGLLLPITRPMFLNSSYATTVSGALLASFVL 128
Query 136 IPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLF 195
IPLQTVIPEELAFRGVLHG + RAWGFRGVA GS+LFG WHIATSLGLT+ NVG TRL
Sbjct 129 IPLQTVIPEELAFRGVLHGTMARAWGFRGVAAVGSLLFGFWHIATSLGLTTGNVGLTRLL 188
Query 196 GGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHL 254
G G+ +AGV AV+AT +AGFVF+WLRRRSGSL+APIALHWSLNGMG LAA LVWHL
Sbjct 189 GVGLWAQIAGVAGAVVATAIAGFVFTWLRRRSGSLLAPIALHWSLNGMGVLAAVLVWHL 247
>gi|226365371|ref|YP_002783154.1| hypothetical protein ROP_59620 [Rhodococcus opacus B4]
gi|226243861|dbj|BAH54209.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=256
Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/227 (71%), Positives = 189/227 (84%), Gaps = 0/227 (0%)
Query 29 YVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLSRQHWKS 88
Y+DIA+VV+VL TNLIAHFTT WASIATVP AAV L++L R RGLGWAELGLS +HW+
Sbjct 28 YLDIAIVVVVLAATNLIAHFTTAWASIATVPIAAVVLLVLTRRRGLGWAELGLSPRHWRK 87
Query 89 GLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTVIPEELAF 148
G +YALAA+ LV+ V+++G LPITRP FM YAT+SGA+IASM++IPLQTVIPEELAF
Sbjct 88 GSLYALAAMGLVIGVVAIGAALPITRPFFMADRYATLSGALIASMIVIPLQTVIPEELAF 147
Query 149 RGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGLVAGVML 208
RGVLHG L+R +G RGV AGS++FGLWHIA+SLGLTS N G + GGG+ G V G++
Sbjct 148 RGVLHGTLDRVYGARGVFAAGSLMFGLWHIASSLGLTSGNKGLSSFLGGGVAGQVLGILA 207
Query 209 AVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLS 255
AV+AT AG VF+WLRRRSGSLIAPIALHWSLNG GALAAA+VWH +
Sbjct 208 AVVATAAAGVVFTWLRRRSGSLIAPIALHWSLNGAGALAAAVVWHTT 254
>gi|54022714|ref|YP_116956.1| putative protease [Nocardia farcinica IFM 10152]
gi|54014222|dbj|BAD55592.1| putative protease [Nocardia farcinica IFM 10152]
Length=241
Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 156/227 (69%), Positives = 188/227 (83%), Gaps = 0/227 (0%)
Query 29 YVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLSRQHWKS 88
Y+D+AVVV+VL TNLIAHFTT WA+I VP AA L+ LVR RGLGWAELGLS +HW+
Sbjct 13 YIDVAVVVVVLACTNLIAHFTTAWANIVAVPVAAGILLALVRRRGLGWAELGLSPRHWRR 72
Query 89 GLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTVIPEELAF 148
G VYALAAV +V+A +++G LLP+TRP F+ YAT+SGA+IASM++IPLQTVIPEELAF
Sbjct 73 GSVYALAAVGVVLAAVAIGALLPVTRPFFLADRYATVSGALIASMIVIPLQTVIPEELAF 132
Query 149 RGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGLVAGVML 208
RGVLHG L+RAWG RGV AGS+LFGLWH+A+S GLTS N G + + GG +G V G++L
Sbjct 133 RGVLHGTLDRAWGARGVFAAGSLLFGLWHVASSFGLTSGNRGLSGMLPGGPLGQVVGILL 192
Query 209 AVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLS 255
AVLAT AG VF+WLRRRSGSL+APIALHWS+NG GALAAA+VWH +
Sbjct 193 AVLATAAAGTVFTWLRRRSGSLLAPIALHWSVNGAGALAAAIVWHTT 239
>gi|296140747|ref|YP_003647990.1| hypothetical protein Tpau_3058 [Tsukamurella paurometabola DSM
20162]
gi|296028881|gb|ADG79651.1| Abortive infection protein [Tsukamurella paurometabola DSM 20162]
Length=255
Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/228 (65%), Positives = 174/228 (77%), Gaps = 0/228 (0%)
Query 27 RIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLSRQHW 86
R YVDIAVVV VLV TNL+AHFT WA++ VP +A L+ + R RGL W ELGL R+HW
Sbjct 26 RAYVDIAVVVGVLVATNLVAHFTGSWAALLAVPISAAVLLGIARYRGLDWHELGLGREHW 85
Query 87 KSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTVIPEEL 146
+SG YA AAV +V VI VG LLP+TR +F+N YAT S A+IASMV+IPLQTVIPEE+
Sbjct 86 RSGAKYAAAAVFIVATVIIVGALLPVTRGLFLNDRYATFSTAIIASMVIIPLQTVIPEEI 145
Query 147 AFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGLVAGV 206
AFRG LHG L+RA FR V V GS+LFG WHIA+SLGLT+ N G T++ G G + +AG+
Sbjct 146 AFRGALHGTLSRAMKFRWVVVTGSLLFGFWHIASSLGLTAGNAGLTKILGSGPLAQIAGI 205
Query 207 MLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHL 254
AVLAT +AG+VF+WLR RSGSLIAPIALHW LNG GALAAA W L
Sbjct 206 AGAVLATALAGYVFTWLRTRSGSLIAPIALHWCLNGAGALAAAFAWQL 253
>gi|336457508|gb|EGO36514.1| CAAX amino terminal protease family [Mycobacterium avium subsp.
paratuberculosis S397]
Length=188
Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 157/188 (84%), Positives = 175/188 (94%), Gaps = 0/188 (0%)
Query 69 VRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGA 128
+R RGLGWA+LGL R HWKSG+ YALAAVA+V AVI++GVLLP TRPMFMN+ YATISGA
Sbjct 1 MRYRGLGWADLGLGRDHWKSGVGYALAAVAVVAAVIAIGVLLPATRPMFMNNRYATISGA 60
Query 129 VIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSN 188
+IASMV+IP+QTVIPEELAFRGVLHGALNRAWGFRGVA+AGS+LFGLWH+ATS GLTS N
Sbjct 61 MIASMVVIPVQTVIPEELAFRGVLHGALNRAWGFRGVALAGSLLFGLWHVATSFGLTSGN 120
Query 189 VGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAA 248
VGFTRLFGGG++G++AGV AVLATG AGFVFSWLRRRSGSLIAPIALHWSLNG+GALAA
Sbjct 121 VGFTRLFGGGMVGMMAGVTGAVLATGAAGFVFSWLRRRSGSLIAPIALHWSLNGLGALAA 180
Query 249 ALVWHLST 256
A VWHLST
Sbjct 181 AFVWHLST 188
>gi|111022863|ref|YP_705835.1| protease [Rhodococcus jostii RHA1]
gi|110822393|gb|ABG97677.1| possible protease [Rhodococcus jostii RHA1]
Length=256
Score = 254 bits (649), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 158/227 (70%), Positives = 189/227 (84%), Gaps = 0/227 (0%)
Query 29 YVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLSRQHWKS 88
Y+DIA+VV+VLV TNLIAHFTT WASIATVP AAV L++L R RGLGWAELGLS +HW+
Sbjct 28 YLDIAIVVVVLVATNLIAHFTTAWASIATVPIAAVVLLVLTRRRGLGWAELGLSPRHWRK 87
Query 89 GLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTVIPEELAF 148
G +YALAA+ LV+ V+++G LPITRP FM YAT+SGA++ASM++IPLQTVIPEELAF
Sbjct 88 GSLYALAAMGLVIGVVAIGAALPITRPFFMADRYATLSGALVASMIVIPLQTVIPEELAF 147
Query 149 RGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGLVAGVML 208
RGVL G L R +G RGV AGS++FGLWHIA+SLGLTS N G + GGG++G V G++
Sbjct 148 RGVLQGTLGRVYGARGVFAAGSLMFGLWHIASSLGLTSGNKGLSGFLGGGVVGQVLGILG 207
Query 209 AVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLS 255
AV+AT AG VF+WLRRRSGSLIAPIALHWSLNG GALAAA+VWH +
Sbjct 208 AVVATAAAGVVFTWLRRRSGSLIAPIALHWSLNGAGALAAAIVWHTT 254
>gi|312138789|ref|YP_004006125.1| peptidase [Rhodococcus equi 103S]
gi|325676513|ref|ZP_08156191.1| abortive infection protein [Rhodococcus equi ATCC 33707]
gi|311888128|emb|CBH47440.1| putative peptidase [Rhodococcus equi 103S]
gi|325552691|gb|EGD22375.1| abortive infection protein [Rhodococcus equi ATCC 33707]
Length=253
Score = 241 bits (616), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 162/236 (69%), Positives = 189/236 (81%), Gaps = 3/236 (1%)
Query 23 MHRFRI---YVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAEL 79
+HR R ++D+ VVV VLV TNL+AHFTT WASIATVP AAV LV L R RGLGWAEL
Sbjct 16 IHRIRAAHAWLDVVVVVAVLVSTNLVAHFTTVWASIATVPIAAVVLVGLTRRRGLGWAEL 75
Query 80 GLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQ 139
GLS +HW+ G VYALA V LV+AV++VG+ LP TR FM YAT+SGA+IASM++IPLQ
Sbjct 76 GLSPRHWRKGTVYALACVGLVLAVVAVGIALPFTRQFFMADRYATVSGALIASMIVIPLQ 135
Query 140 TVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGI 199
TVIPEELAFRGVL G L+R G RGV AGS+LFGLWHIA+SLGLT+ N G T + GGG+
Sbjct 136 TVIPEELAFRGVLQGTLSRVSGARGVFAAGSLLFGLWHIASSLGLTTGNRGLTGILGGGL 195
Query 200 IGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLS 255
+G + G+ AV AT AGFVF+WLR RSGSL+APIALHWSLNG+GALAAALVWH S
Sbjct 196 MGQILGIAGAVAATAAAGFVFTWLRSRSGSLLAPIALHWSLNGIGALAAALVWHAS 251
>gi|262202625|ref|YP_003273833.1| abortive infection protein [Gordonia bronchialis DSM 43247]
gi|262085972|gb|ACY21940.1| Abortive infection protein [Gordonia bronchialis DSM 43247]
Length=250
Score = 191 bits (486), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 114/233 (49%), Positives = 158/233 (68%), Gaps = 0/233 (0%)
Query 24 HRFRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLSR 83
H R+ +AVVV +L +TN +AHFT +A VP AV L++L R GL W +GLS
Sbjct 18 HHRRMVALLAVVVAILAITNYVAHFTDANIELAAVPVMAVVLLVLARWAGLRWRSMGLSP 77
Query 84 QHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTVIP 143
++G+ +A+ AV +V +++ V +P TR +F++ Y S A++A+ V+IPLQTV+P
Sbjct 78 GELRAGVPFAVGAVVVVAVIVTAAVAIPATRELFLSDRYNDTSEAMLAAFVLIPLQTVLP 137
Query 144 EELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGLV 203
EE+AFRGVL G L +G + G+VLFG WHIATSLGLT+ N G T++ G GI G V
Sbjct 138 EEIAFRGVLQGTLGELFGRWPTLIIGAVLFGCWHIATSLGLTAGNEGLTQILGSGIPGQV 197
Query 204 AGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLST 256
AGV+ AV+AT AG + WLR R+ SL+APIALHWSLN +GA+ AA+ W L++
Sbjct 198 AGVLGAVIATAAAGLILGWLRDRTTSLLAPIALHWSLNAIGAIGAAVAWQLTS 250
>gi|319949528|ref|ZP_08023578.1| hypothetical protein ES5_08761 [Dietzia cinnamea P4]
gi|319436818|gb|EFV91888.1| hypothetical protein ES5_08761 [Dietzia cinnamea P4]
Length=250
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/182 (56%), Positives = 128/182 (71%), Gaps = 0/182 (0%)
Query 72 RGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIA 131
RG+ WAELGLS +H GL Y LAA V AV++ G L+P T P F++ Y+ + AV +
Sbjct 65 RGMQWAELGLSLRHMPRGLAYGLAATVAVAAVVTAGCLIPATSPFFLSERYSDLRMAVFS 124
Query 132 SMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGF 191
++V+IPL TV+PEE AFRGVL GAL R +G GV V GS+ FGLWH+ +SLGLT+ N G
Sbjct 125 ALVLIPLMTVLPEEFAFRGVLQGALERTFGTTGVFVIGSLSFGLWHVTSSLGLTAGNAGL 184
Query 192 TRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALV 251
+ G G +G +AG+ LAV AT VAG F W+RRRS SL+API LHW+ N +GALAAAL
Sbjct 185 AEVLGTGPVGQLAGIGLAVTATSVAGAGFIWIRRRSRSLLAPIGLHWAFNAVGALAAALT 244
Query 252 WH 253
W
Sbjct 245 WR 246
>gi|343928507|ref|ZP_08767955.1| hypothetical protein GOALK_117_01130 [Gordonia alkanivorans NBRC
16433]
gi|343761692|dbj|GAA14881.1| hypothetical protein GOALK_117_01130 [Gordonia alkanivorans NBRC
16433]
Length=236
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/222 (49%), Positives = 149/222 (68%), Gaps = 0/222 (0%)
Query 34 VVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLSRQHWKSGLVYA 93
V+V L+ N+ AH ++ ++ +P AA+ L+++ R GL W ELGLSR ++G+ +A
Sbjct 15 VIVAALIAVNVAAHRSSGVFAVLIIPVAAILLLLIARLGGLDWRELGLSRAELRAGVPFA 74
Query 94 LAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTVIPEELAFRGVLH 153
+A+V +V A++S V +P TR F++ Y S A++A+ V+IPLQT IPEEL FRGVL
Sbjct 75 VASVIVVAAIVSTAVAIPATRDFFLSDRYDDTSEALLAAFVVIPLQTAIPEELMFRGVLQ 134
Query 154 GALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLAT 213
G L R G G V G+V FGLWHI +S GLT N G + G G + VAG+ AV+AT
Sbjct 135 GTLGRLCGPTGTLVYGAVAFGLWHILSSTGLTEGNEGLSDTLGSGTVAQVAGIAGAVVAT 194
Query 214 GVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLS 255
G+AGFV WLR+R+ SL+APIALHW+LN GA+ AA+ W +S
Sbjct 195 GLAGFVLGWLRQRTTSLLAPIALHWALNATGAIGAAVAWQVS 236
>gi|334564879|ref|ZP_08517870.1| hypothetical protein CbovD2_09926 [Corynebacterium bovis DSM
20582]
Length=250
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/216 (53%), Positives = 150/216 (70%), Gaps = 0/216 (0%)
Query 39 LVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVA 98
LV NL AHFT+ A TVP L++++R RG+ W +LGL R + GL Y A
Sbjct 34 LVAINLTAHFTSLSAVATTVPVGVACLLVIMRMRGMTWHDLGLGRHTTRRGLAYGTGAAV 93
Query 99 LVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNR 158
LVV + VG+ LP+TR F N YA+ A++A++V+IPLQTV+PEELAFRGVLHG+L+R
Sbjct 94 LVVLGVGVGLALPVTREFFFNSSYASARTAILAALVVIPLQTVLPEELAFRGVLHGSLHR 153
Query 159 AWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGF 218
G + V +AGS+LFGLWH+A+SL LT++N G T + G G + AG+ LAV+AT AG
Sbjct 154 LGGTKAVFIAGSLLFGLWHVASSLSLTATNAGLTAVLGTGTLAQWAGIGLAVVATAGAGA 213
Query 219 VFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHL 254
+WLR R+GS+IAPI LHW+LN +GALAAA WH
Sbjct 214 GLTWLRHRTGSVIAPIGLHWALNAVGALAAAAAWHF 249
>gi|340793087|ref|YP_004758550.1| hypothetical protein CVAR_0130 [Corynebacterium variabile DSM
44702]
gi|340532997|gb|AEK35477.1| putative membrane protein [Corynebacterium variabile DSM 44702]
Length=267
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 105/230 (46%), Positives = 148/230 (65%), Gaps = 4/230 (1%)
Query 13 PGPLVSHLSVMHRFRIY----VDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVIL 68
P + + +S+ RFR+ + + V++ L N+ AH T+ A VP L+++
Sbjct 21 PDSMAATMSLGGRFRVRRADLISVVAVIMGLATINVTAHLTSLSTVAAIVPVGVACLLVI 80
Query 69 VRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGA 128
++RG+ W +LGL R H GL Y AV LV AVI++ + +P+TR F N YA++ A
Sbjct 81 AKARGMSWTDLGLGRAHIGKGLKYGTGAVVLVAAVIALALAIPMTRGFFFNESYASLRTA 140
Query 129 VIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSN 188
+IA++V+IPLQTV+PEELAFRG+LHG L R G + V + GS+LFGLWH+A+SL LT++N
Sbjct 141 LIAALVIIPLQTVLPEELAFRGLLHGRLRRLGGTKAVFIGGSILFGLWHVASSLSLTATN 200
Query 189 VGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHW 238
VG T G G AGV LAV+AT AG +WLR +GS++API LHW
Sbjct 201 VGLTAFLGSGTAAQWAGVGLAVVATAGAGAGLTWLRHHTGSVLAPIGLHW 250
>gi|25026639|ref|NP_736693.1| hypothetical protein CE0083 [Corynebacterium efficiens YS-314]
gi|259508229|ref|ZP_05751129.1| abortive infection protein [Corynebacterium efficiens YS-314]
gi|23491918|dbj|BAC16893.1| hypothetical protein [Corynebacterium efficiens YS-314]
gi|259164164|gb|EEW48718.1| abortive infection protein [Corynebacterium efficiens YS-314]
Length=232
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 109/221 (50%), Positives = 142/221 (65%), Gaps = 7/221 (3%)
Query 23 MHRFRIYVDIAVVVLVLVLTNLIAHFTT--PWASIATVPAAAVGLVILVRSRGLGWAELG 80
+HR ++ D VVV +L+ N+ AHF+ PW I PA AV LV L GL W +LG
Sbjct 3 LHRRKVR-DTVVVVTMLMGVNVAAHFSNLNPWVVI---PAGAVALVALAPGMGLTWGDLG 58
Query 81 LSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQT 140
+ R GL Y A ALV+AV++ GV LP R F+N Y ++ A+ A++++IPL T
Sbjct 59 VRRSSIGRGLAYGGTAAALVIAVVAAGVALPFAREFFLNDAYTSMRTALFAAVIIIPLTT 118
Query 141 VIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGII 200
V+PEEL FRGVLHG+L R +G + + GSVLFGLWH+ATSL LT+ N G + L G G
Sbjct 119 VLPEELLFRGVLHGSLER-FGVKTAFIGGSVLFGLWHVATSLNLTAGNAGLSALLGTGSF 177
Query 201 GLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLN 241
G GV LAV AT VAG F WLR R S++AP++LHW+LN
Sbjct 178 GRWMGVALAVAATSVAGAGFIWLRHRPDSVLAPVSLHWALN 218
>gi|326382317|ref|ZP_08204009.1| hypothetical protein SCNU_05226 [Gordonia neofelifaecis NRRL
B-59395]
gi|326199047|gb|EGD56229.1| hypothetical protein SCNU_05226 [Gordonia neofelifaecis NRRL
B-59395]
Length=241
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/226 (51%), Positives = 149/226 (66%), Gaps = 0/226 (0%)
Query 29 YVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLSRQHWKS 88
+ + VV+ LV NL+AHF W + VP AV V+L R RGLGW+E+G+S K
Sbjct 15 WWRVVVVIAALVTINLLAHFAGHWFGLLAVPVGAVLAVLLARLRGLGWSEMGISLSELKY 74
Query 89 GLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTVIPEELAF 148
G ++ + +VV ++VGV +P TR F+N Y++ A++A++V IPLQTVIPEEL F
Sbjct 75 GFRWSAIVLVVVVLAVAVGVAIPWTRSFFLNDRYSSARDALLAALVWIPLQTVIPEELLF 134
Query 149 RGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGLVAGVML 208
RGVL G L R G R G+ LFGLWHIA+SLGL+S N G T GGG+ VAGV+
Sbjct 135 RGVLQGTLRRVLGRRTTLAVGAGLFGLWHIASSLGLSSGNAGVTDAIGGGVGAAVAGVVG 194
Query 209 AVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHL 254
AV+AT AG++ WLR R+ +L+API LHW+LN GAL AAL WHL
Sbjct 195 AVVATTAAGWILGWLRFRTANLLAPIVLHWTLNASGALGAALAWHL 240
>gi|291299925|ref|YP_003511203.1| abortive infection protein [Stackebrandtia nassauensis DSM 44728]
gi|290569145|gb|ADD42110.1| Abortive infection protein [Stackebrandtia nassauensis DSM 44728]
Length=225
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/197 (44%), Positives = 120/197 (61%), Gaps = 2/197 (1%)
Query 59 PAAAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFM 118
P AV L++L R GL W +LGLSR+ W GL +A A+A V AV +G LLP+TR F+
Sbjct 27 PLVAVALIVLARWHGLTWHDLGLSRRTWGKGLKWASLAIAAVAAVYLIGALLPLTRDAFV 86
Query 119 NHHYATISG-AVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWH 177
+ Y +G A++ V+IPL T+ EE+AFRGVL G L + G SVLFGLWH
Sbjct 87 DSRYQLGTGTALLTGFVLIPLGTIALEEVAFRGVLMGVLGKRKGVTLAISVSSVLFGLWH 146
Query 178 IATSLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALH 237
+ SL + ++ + + G G++ V V V TG AG++ +RRRSGSL+AP+ LH
Sbjct 147 VLPSLAMGANKL-VASIVGPGLLARVIMVAAVVAFTGAAGWLLCEVRRRSGSLLAPMGLH 205
Query 238 WSLNGMGALAAALVWHL 254
W+ NG+G L + +W L
Sbjct 206 WATNGLGVLLTSALWSL 222
>gi|317123255|ref|YP_004097367.1| hypothetical protein Intca_0078 [Intrasporangium calvum DSM 43043]
gi|315587343|gb|ADU46640.1| Abortive infection protein [Intrasporangium calvum DSM 43043]
Length=252
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/206 (39%), Positives = 115/206 (56%), Gaps = 2/206 (0%)
Query 52 WASIATVPAAAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLP 111
W S+ P AV L+ R GL W +LGLSR+ SGL + L + +V V VGVL+P
Sbjct 47 WGSLWLGPTGAVALLAFARFSGLTWRQLGLSRRTHASGLRWGLGVIGVVALVYLVGVLVP 106
Query 112 ITRPMFMNHHY-ATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGS 170
TR F++ Y + A++ + V+IP+ T++ EE+AFR VL G L+R VA+ S
Sbjct 107 QTRTAFLDARYHLPPASALLTAFVIIPVGTILLEEVAFRSVLWGFLSRHARVWQVALGSS 166
Query 171 VLFGLWHIATSLGLTSSNVGF-TRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGS 229
+LFGLWH+ + ++N + G G V V VL T + G V LRRRSGS
Sbjct 167 LLFGLWHVLPASAAVTANPALGAVMVGLGAWQQVVSVAGTVLFTALGGLVAGELRRRSGS 226
Query 230 LIAPIALHWSLNGMGALAAALVWHLS 255
++A + +HW+ N +G L + W L+
Sbjct 227 ILASVGMHWATNALGVLFGLVAWQLA 252
>gi|258652201|ref|YP_003201357.1| abortive infection protein [Nakamurella multipartita DSM 44233]
gi|258555426|gb|ACV78368.1| Abortive infection protein [Nakamurella multipartita DSM 44233]
Length=227
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/204 (39%), Positives = 115/204 (57%), Gaps = 2/204 (0%)
Query 43 NLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVA 102
N++AH P AS+ L + R+ L A+LGL+R+ W SG+ + A A+V
Sbjct 21 NVLAH-RVPAASVLIGVGLTGTLAAVARAGRLTAADLGLARRSWPSGVRWGGACAAVVAT 79
Query 103 VISVGVLLPITRPMFMNHHYATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGF 162
V +L+P R + ++A++V+IPL TVIPEE AFRGVL G L R G
Sbjct 80 GYGVAMLVPAARGLVTGAGPGW-GPTLLAALVVIPLGTVIPEEFAFRGVLWGLLRRRCGP 138
Query 163 RGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSW 222
R + S LFGLWH+A +L +N + + G G +G+ V+ V+ TG AG +
Sbjct 139 RVATLVSSGLFGLWHVAPALAAGPANDAMSAVVGSGPLGVAVRVIATVVFTGAAGVLLCE 198
Query 223 LRRRSGSLIAPIALHWSLNGMGAL 246
+R RS SL+AP+ALH ++NG+G +
Sbjct 199 VRARSNSLLAPLALHGAVNGIGQI 222
>gi|258655334|ref|YP_003204490.1| abortive infection protein [Nakamurella multipartita DSM 44233]
gi|258558559|gb|ACV81501.1| Abortive infection protein [Nakamurella multipartita DSM 44233]
Length=241
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/177 (42%), Positives = 101/177 (58%), Gaps = 1/177 (0%)
Query 68 LVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISG 127
L R GL A+LGLSR W++GL + A VA+ A +V +++P R + A S
Sbjct 59 LARWAGLSIADLGLSRATWRTGLRWGGAVVAMAAAGYAVALVVPPVRALVAGGSGA-WSQ 117
Query 128 AVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSS 187
+A++++IPL TV+PEE AFRGVL + R G + S LFG WH+ +LG S+
Sbjct 118 TALAALLVIPLGTVVPEEFAFRGVLWAVVRRERGRWLATLVSSTLFGAWHVVPALGGGSA 177
Query 188 NVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMG 244
N F ++ G G +GLV V V T AG V LR RSGSL+AP+ H +N +G
Sbjct 178 NQAFDQVAGSGTMGLVLRVGSTVAFTAAAGVVLCVLRMRSGSLLAPMLAHAGINCLG 234
>gi|271962778|ref|YP_003336974.1| hypothetical protein Sros_1233 [Streptosporangium roseum DSM
43021]
gi|270505953|gb|ACZ84231.1| hypothetical protein Sros_1233 [Streptosporangium roseum DSM
43021]
Length=289
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/213 (34%), Positives = 100/213 (47%), Gaps = 37/213 (17%)
Query 70 RSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGA- 128
R GL W+ELG R GL + V V +VG+ +P TR F + ++S A
Sbjct 58 RRSGLSWSELGFHR--GPPGLRIGGTLASAVAGVYAVGIAVPATRRFFRDERALSLSRAR 115
Query 129 -VIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSS 187
+ +++ +P+ TV+ EE+ FRGVLH L R+ G R S LFGLWH+ ++ + ++
Sbjct 116 ALEEALLQVPVGTVLLEEVGFRGVLHALLTRSHGPRTATAVSSALFGLWHVLPAIDMMAA 175
Query 188 NVGFTRLFGGGIIG-----------------------------LVAGVMLAVLATGVAGF 218
N + L G G +VAG +V ATG+AG
Sbjct 176 NPALSGLAAGEPPGDGPLEEDRRGEDGAAQDPPARASRWEAARVVAG---SVAATGLAGV 232
Query 219 VFSWLRRRSGSLIAPIALHWSLNGMGALAAALV 251
F LRRR G L AP LH + N +G L A L
Sbjct 233 FFCELRRR-GGLAAPSLLHVATNSLGYLFARLA 264
>gi|331696637|ref|YP_004332876.1| abortive infection protein [Pseudonocardia dioxanivorans CB1190]
gi|326951326|gb|AEA25023.1| Abortive infection protein [Pseudonocardia dioxanivorans CB1190]
Length=244
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/224 (36%), Positives = 119/224 (54%), Gaps = 5/224 (2%)
Query 26 FRIYVDIAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLSRQH 85
R + + V+ +L +N++++ P A I A A LV++ R G+ WA+LGLSR
Sbjct 19 LRRRLGLVSVITILAASNVVSNRLWPEAYIPWNLAVAALLVVVARGCGVTWADLGLSRAT 78
Query 86 WKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVI-ASMVMIPLQTVIPE 144
+ GL A A V + V + +P TR F + A GA++ A+++ IPL T + E
Sbjct 79 VRRGLGVGAIAFAAVAVLYLVALAIPATREAFQDSRAAGPLGAMLFAALIRIPLGTAVLE 138
Query 145 ELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGLVA 204
E+AFRGVL G + +W R + +G LFGLWH+ S+G+ +N GG G VA
Sbjct 139 EVAFRGVLPGLVGGSWWRRTLVSSG--LFGLWHVLPSIGMAGANAAVAASVGG--WGTVA 194
Query 205 GVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAA 248
AV+ T AG + S RR G L+ P+ H + N +G L A
Sbjct 195 TCAAAVVGTAAAGVLLSAWRRWGGHLVTPVLAHVATNSLGVLIA 238
>gi|111021808|ref|YP_704780.1| protease [Rhodococcus jostii RHA1]
gi|110821338|gb|ABG96622.1| possible protease [Rhodococcus jostii RHA1]
Length=214
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/197 (36%), Positives = 97/197 (50%), Gaps = 24/197 (12%)
Query 58 VPAAAVGLVIL--VRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLP-ITR 114
V A+GL ++ R+ G G ELGLS +SGL Y A + +A ++ + +P + R
Sbjct 33 VAGGALGLSVVGAARAAGYGIDELGLSASKARSGLRYGALASVIPLAGYAITLSVPALRR 92
Query 115 PMFMNHHYATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFG 174
+ +G V IP+ TV EEL FR VL L RAW + FG
Sbjct 93 RVPTGDDVTDFAGWV---GFRIPVGTVAHEELLFRSVLSAMLRRAWPPATAHALHAATFG 149
Query 175 LWHIATSLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPI 234
LWH+ + R+ G G V +VL TG + ++F W RRRSGS++AP
Sbjct 150 LWHVRAA-----------RIAGDG-------VAASVLLTGCSAWLFEWARRRSGSVVAPA 191
Query 235 ALHWSLNGMGALAAALV 251
LH S+N GA+AA LV
Sbjct 192 LLHLSINVGGAVAAELV 208
>gi|258655165|ref|YP_003204321.1| abortive infection protein [Nakamurella multipartita DSM 44233]
gi|258558390|gb|ACV81332.1| Abortive infection protein [Nakamurella multipartita DSM 44233]
Length=247
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/227 (33%), Positives = 119/227 (53%), Gaps = 11/227 (4%)
Query 32 IAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRG-LGWAELGLSRQHWKSGL 90
+A+V+++LV++N++A+ P + + GL++ V +RG G +GL +HW +
Sbjct 23 LAIVIVLLVISNIVANRVIPQWAYVPWNLSMAGLLLYVSTRGGAGPVAIGLGIRHWHRPV 82
Query 91 VYALAAVALVVAVISVGVLLPITRPMFMNHHY--ATISGAVIASMVMIPLQTVIPEELAF 148
L V V ++G+++P T+ F++ AT+ + +V IPL TV+ EE+AF
Sbjct 83 GVGLLLVGSTALVFALGMIIPATQNAFLDTRIGDATLGQMLFIVLVQIPLGTVVLEEVAF 142
Query 149 RGVLHGALNRAWG--FRGVAVAG-SVLFGLWHIATSLGLTSSNVGFTRLFGGGI-IGLVA 204
RGVL + A +R V V G S LFGLWHI S+G+ ++N + G I A
Sbjct 143 RGVLPALMGGAPAIRWRWVPVLGASFLFGLWHILPSMGIGNANAAVGQTLGTNPWITTTA 202
Query 205 GVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALV 251
AVL+ AG + + R + + LHW+ N +G AA L+
Sbjct 203 ----AVLSMTAAGVLMCVMARVGKGIKTTMLLHWATNSLGFFAAWLL 245
>gi|284990802|ref|YP_003409356.1| abortive infection protein [Geodermatophilus obscurus DSM 43160]
gi|284064047|gb|ADB74985.1| Abortive infection protein [Geodermatophilus obscurus DSM 43160]
Length=226
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/141 (42%), Positives = 78/141 (56%), Gaps = 7/141 (4%)
Query 111 PITRPMFMNHHYATISGAVIASMVM--IPLQTVIPEELAFRGVLHGALNRAWGFRGVAVA 168
P RP+ + A + G +A V+ IPL TV+ EE+AFRGVL AL R R
Sbjct 87 PALRPLLGDARVAGLDGGELAGQVLVRIPLGTVLWEEVAFRGVLLAALGRLVSRRSATGI 146
Query 169 GSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSG 228
+ LFGLWH+ +LG ++N GG + V+LA L T AG +F+ LR RSG
Sbjct 147 SAALFGLWHVRPTLGALAAND-----LAGGPLARTGAVVLACLGTAAAGVLFAELRERSG 201
Query 229 SLIAPIALHWSLNGMGALAAA 249
SL+AP LH + N +G LA A
Sbjct 202 SLLAPALLHLATNCLGLLAGA 222
>gi|226364331|ref|YP_002782113.1| hypothetical protein ROP_49210 [Rhodococcus opacus B4]
gi|226242820|dbj|BAH53168.1| hypothetical protein [Rhodococcus opacus B4]
Length=214
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/194 (36%), Positives = 94/194 (49%), Gaps = 24/194 (12%)
Query 58 VPAAAVGLVIL--VRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRP 115
V A+GL ++ R+ G G ELGLS +SGL Y AA + +A ++ + +P R
Sbjct 33 VAGGALGLSVVGAARTAGYGVDELGLSASAVRSGLRYGAAASVVPLAGYAIALGVPAARR 92
Query 116 MF-MNHHYATISGAVIASMVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFG 174
++G V IP+ TV EEL FR VL L R W V + FG
Sbjct 93 QVPTGDRVGDVAGWV---GFRIPVGTVAHEELLFRSVLSAMLRRGWTPTAADVLHAATFG 149
Query 175 LWHIATSLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPI 234
LWH+ + R+ I+ +VL TG + ++F WLRRRSGS++AP
Sbjct 150 LWHVRAA-----------RIARDPIVA-------SVLLTGASAWLFEWLRRRSGSVVAPA 191
Query 235 ALHWSLNGMGALAA 248
LH S+N G LAA
Sbjct 192 LLHLSVNVGGVLAA 205
>gi|145222224|ref|YP_001132902.1| abortive infection protein [Mycobacterium gilvum PYR-GCK]
gi|315442663|ref|YP_004075542.1| CAAX amino terminal protease family [Mycobacterium sp. Spyr1]
gi|145214710|gb|ABP44114.1| Abortive infection protein [Mycobacterium gilvum PYR-GCK]
gi|315260966|gb|ADT97707.1| CAAX amino terminal protease family [Mycobacterium sp. Spyr1]
Length=215
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/171 (34%), Positives = 82/171 (48%), Gaps = 20/171 (11%)
Query 78 ELGLSRQHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVMIP 137
LGL + G+ + AA A V ++ G++ P R + ++ IP
Sbjct 47 SLGLRPAQLRRGVRWGSAAAAPVGLGVAAGLMAPAVRAGMAARDLPAAPARWL--LLRIP 104
Query 138 LQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGG 197
TV PEELA+R VL A RA+G R + +V+FGL H+ + R G
Sbjct 105 FATVGPEELAYRAVLGDAATRAFGPRVGKLFTAVVFGLSHVPDA-----------RAAGD 153
Query 198 GIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAA 248
+ G V + TG AG+VFSWL SGSL AP+ H ++N GA+AA
Sbjct 154 NVPGTV-------VVTGAAGWVFSWLHESSGSLAAPVLAHLAVNEAGAVAA 197
>gi|229488497|ref|ZP_04382363.1| abortive infection protein [Rhodococcus erythropolis SK121]
gi|229324001|gb|EEN89756.1| abortive infection protein [Rhodococcus erythropolis SK121]
Length=218
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 96/225 (43%), Gaps = 21/225 (9%)
Query 26 FRIYVDIAVVVLVLVLTNLI--AHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLSR 83
R IA+ + +NL+ A +P A AA + + ++ +RG ELGL+
Sbjct 1 MRGAASIALSATAITWSNLVLPAFGLSPRARAVVNTAAGLSAIGVLLARGYTREELGLAH 60
Query 84 QHWKSGLVYALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVIASMVM-IPLQTVI 142
+ G + AA V+ SV + +P R A + +++ IP TV+
Sbjct 61 TGIRGGSQFGGAAAGAVLTGYSVALAVPSLRATLAADERADGREDFLEWIILHIPFGTVL 120
Query 143 PEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGL 202
EEL FR + +R ++ FGLWH+A + G +
Sbjct 121 SEELLFRSAMSAVWSRELNRPTAQAVHALTFGLWHVAPARGAGDN--------------- 165
Query 203 VAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALA 247
V AV TG + +F WL RR GS++AP LH + N GALA
Sbjct 166 ---VPAAVAFTGASALLFEWLHRRGGSVLAPALLHLATNAGGALA 207
>gi|296268636|ref|YP_003651268.1| abortive infection protein [Thermobispora bispora DSM 43833]
gi|296091423|gb|ADG87375.1| Abortive infection protein [Thermobispora bispora DSM 43833]
Length=246
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/240 (33%), Positives = 112/240 (47%), Gaps = 27/240 (11%)
Query 32 IAVVVLVLVLTNLIAHFTTPWASIATVPAAAVGLVILVRSRGLGWAELGLSRQHWKSGLV 91
+ V+ + VL N +A P S A + A ++++VR G+ W ELG + G
Sbjct 11 LGVLAVANVLNNRVARRMAPVTSAAALTA----MLVIVRRHGVTWPELGFL--RARRGAA 64
Query 92 YALAAVALVVAVISVGVLLPITRPMFMNHHYATISGAVI--ASMVMIPLQTVIPEELAFR 149
A A V A + GV +P TR F + +S A + ++V +P+ TV+ EE+ FR
Sbjct 65 LGGALAAAVAAGYAAGVAIPHTRAFFHDQRALGLSRARLLEEALVQVPVGTVLLEEIGFR 124
Query 150 GVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFTRLFGG-----GIIGLVA 204
GVL L R A A + LFGLWH+ ++ + +N RL GG G G A
Sbjct 125 GVLPALLGRVLPGPTAAAASAALFGLWHVLPAVDMAKANPALGRLAGGSAGADGPAGADA 184
Query 205 G---------VMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAAALVWHLS 255
G V V+ T AG +F LRRR G L + + N +G LAA HLS
Sbjct 185 GDGRARTARLVAGTVVTTAAAGVLFHELRRRGGLLAPALLHLAT-NSLGYLAA----HLS 239
>gi|108801507|ref|YP_641704.1| abortive infection protein [Mycobacterium sp. MCS]
gi|119870660|ref|YP_940612.1| abortive infection protein [Mycobacterium sp. KMS]
gi|126437492|ref|YP_001073183.1| abortive infection protein [Mycobacterium sp. JLS]
gi|108771926|gb|ABG10648.1| Abortive infection protein [Mycobacterium sp. MCS]
gi|119696749|gb|ABL93822.1| Abortive infection protein [Mycobacterium sp. KMS]
gi|126237292|gb|ABO00693.1| Abortive infection protein [Mycobacterium sp. JLS]
Length=212
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/116 (42%), Positives = 64/116 (56%), Gaps = 18/116 (15%)
Query 133 MVMIPLQTVIPEELAFRGVLHGALNRAWGFRGVAVAGSVLFGLWHIATSLGLTSSNVGFT 192
++ IPL TV EELA+RG L A+G + SV FGL HIA +
Sbjct 102 ILRIPLGTVWAEELAYRGALGYLGASAFGPTRGRLLQSVAFGLSHIADA----------- 150
Query 193 RLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSGSLIAPIALHWSLNGMGALAA 248
R G ++G V+ TG+AG+VF+WL RSGSL+AP+ H ++N GALAA
Sbjct 151 RAAGEPVVG-------TVVTTGIAGWVFAWLAERSGSLVAPMLAHLAVNEAGALAA 199
>gi|226308317|ref|YP_002768277.1| hypothetical protein RER_48300 [Rhodococcus erythropolis PR4]
gi|226187434|dbj|BAH35538.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
Length=218
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/199 (29%), Positives = 86/199 (44%), Gaps = 19/199 (9%)
Query 50 TPWASIATVPAAAVGLVILVRSRGLGWAELGLSRQHWKSGLVYALAAVALVVAVISVGVL 109
+P A AA + + ++ +RG ELGL+ + G + AA V+ S ++
Sbjct 27 SPRARAVVNTAAGLSAIGVLLARGYTREELGLAHTGIRGGAQFGGAAAGAVLTGYSAALV 86
Query 110 LPITRPMFMNHHYATISGAVIASMVM-IPLQTVIPEELAFRGVLHGALNRAWGFRGVAVA 168
+P R A + +++ IP TV+ EEL FR + NR
Sbjct 87 VPSLRATLAADERADGREDFLEWIILHIPFGTVLSEELLFRSAMSAVWNRELNRPTAQAV 146
Query 169 GSVLFGLWHIATSLGLTSSNVGFTRLFGGGIIGLVAGVMLAVLATGVAGFVFSWLRRRSG 228
++ FGLWH+A + G + V AV TG + +F WL RR G
Sbjct 147 HALTFGLWHVAPARGAGDN------------------VPAAVAFTGASALLFEWLHRRGG 188
Query 229 SLIAPIALHWSLNGMGALA 247
S++AP LH + N GALA
Sbjct 189 SVLAPALLHLATNAGGALA 207
Lambda K H
0.328 0.139 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 377837056800
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40