BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1871c
Length=129
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609008|ref|NP_216387.1| hypothetical protein Rv1871c [Mycob... 263 9e-69
gi|298525363|ref|ZP_07012772.1| conserved hypothetical protein [... 255 1e-66
gi|240170508|ref|ZP_04749167.1| hypothetical protein MkanA1_1444... 220 5e-56
gi|118465278|ref|YP_882031.1| hypothetical protein MAV_2845 [Myc... 219 1e-55
gi|41407681|ref|NP_960517.1| hypothetical protein MAP1583c [Myco... 219 1e-55
gi|254775321|ref|ZP_05216837.1| hypothetical protein MaviaA2_117... 216 7e-55
gi|254819319|ref|ZP_05224320.1| hypothetical protein MintA_05308... 216 1e-54
gi|342861224|ref|ZP_08717872.1| hypothetical protein MCOL_20171 ... 213 6e-54
gi|296164871|ref|ZP_06847427.1| conserved hypothetical protein [... 209 7e-53
gi|118618396|ref|YP_906728.1| hypothetical protein MUL_3004 [Myc... 209 1e-52
gi|289554355|ref|ZP_06443565.1| conserved hypothetical protein [... 206 8e-52
gi|336457520|gb|EGO36526.1| deazaflavin-dependent nitroreductase... 179 9e-44
gi|290959608|ref|YP_003490790.1| hypothetical protein SCAB_52111... 151 3e-35
gi|29830339|ref|NP_824973.1| hypothetical protein SAV_3796 [Stre... 150 4e-35
gi|108798563|ref|YP_638760.1| hypothetical protein Mmcs_1593 [My... 150 5e-35
gi|302545858|ref|ZP_07298200.1| conserved hypothetical protein [... 148 3e-34
gi|111018794|ref|YP_701766.1| hypothetical protein RHA1_ro01795 ... 147 5e-34
gi|302552173|ref|ZP_07304515.1| conserved hypothetical protein [... 146 1e-33
gi|291438997|ref|ZP_06578387.1| conserved hypothetical protein [... 145 2e-33
gi|226360883|ref|YP_002778661.1| hypothetical protein ROP_14690 ... 145 3e-33
gi|297200390|ref|ZP_06917787.1| conserved hypothetical protein [... 138 3e-31
gi|120402896|ref|YP_952725.1| hypothetical protein Mvan_1899 [My... 136 1e-30
gi|302560096|ref|ZP_07312438.1| conserved hypothetical protein [... 135 2e-30
gi|315445410|ref|YP_004078289.1| hypothetical protein Mspyr1_386... 127 7e-28
gi|145225041|ref|YP_001135719.1| hypothetical protein Mflv_4462 ... 125 2e-27
gi|21222815|ref|NP_628594.1| hypothetical protein SCO4427 [Strep... 114 4e-24
gi|209974332|gb|ACJ04046.1| SLD6.05c [Streptomyces lividans] 112 1e-23
gi|289770005|ref|ZP_06529383.1| conserved hypothetical protein [... 112 1e-23
gi|15828106|ref|NP_302369.1| hypothetical protein ML2048 [Mycoba... 98.2 3e-19
gi|284045200|ref|YP_003395540.1| hypothetical protein Cwoe_3748 ... 98.2 4e-19
gi|183983543|ref|YP_001851834.1| hypothetical protein MMAR_3562 ... 86.3 1e-15
gi|169631710|ref|YP_001705359.1| hypothetical protein MAB_4636 [... 84.3 5e-15
gi|118618231|ref|YP_906563.1| hypothetical protein MUL_2795 [Myc... 84.0 6e-15
gi|333922117|ref|YP_004495698.1| putative oxidoreductase [Amycol... 82.4 2e-14
gi|317507514|ref|ZP_07965238.1| hypothetical protein HMPREF9336_... 81.3 4e-14
gi|296140649|ref|YP_003647892.1| hypothetical protein Tpau_2957 ... 72.8 1e-11
gi|229493878|ref|ZP_04387650.1| conserved hypothetical protein [... 69.7 1e-10
gi|226307729|ref|YP_002767689.1| hypothetical protein RER_42420 ... 68.6 3e-10
gi|269839007|ref|YP_003323699.1| hypothetical protein Tter_1971 ... 52.0 3e-05
gi|221633124|ref|YP_002522349.1| hypothetical protein trd_1140 [... 49.3 2e-04
gi|111021649|ref|YP_704621.1| hypothetical protein RHA1_ro04677 ... 48.9 3e-04
gi|269838393|ref|YP_003320621.1| hypothetical protein Sthe_2382 ... 47.0 8e-04
gi|317507943|ref|ZP_07965638.1| hypothetical protein HMPREF9336_... 46.6 0.001
gi|118471984|ref|YP_887322.1| hypothetical protein MSMEG_3004 [M... 46.2 0.002
gi|226364186|ref|YP_002781968.1| hypothetical protein ROP_47760 ... 46.2 0.002
gi|240172639|ref|ZP_04751298.1| hypothetical protein MkanA1_2521... 44.7 0.004
gi|326382027|ref|ZP_08203720.1| hypothetical protein SCNU_03747 ... 44.7 0.005
gi|183982309|ref|YP_001850600.1| hypothetical protein MMAR_2296 ... 44.3 0.007
gi|118617159|ref|YP_905491.1| hypothetical protein MUL_1499 [Myc... 43.5 0.010
gi|297159709|gb|ADI09421.1| hypothetical protein SBI_06301 [Stre... 43.5 0.010
>gi|15609008|ref|NP_216387.1| hypothetical protein Rv1871c [Mycobacterium tuberculosis H37Rv]
gi|15841340|ref|NP_336377.1| hypothetical protein MT1920 [Mycobacterium tuberculosis CDC1551]
gi|31793061|ref|NP_855554.1| hypothetical protein Mb1902c [Mycobacterium bovis AF2122/97]
49 more sequence titles
Length=129
Score = 263 bits (671), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 128/129 (99%), Positives = 129/129 (100%), Gaps = 0/129 (0%)
Query 1 LNAAMNLKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVS 60
+NAAMNLKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVS
Sbjct 1 MNAAMNLKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVS 60
Query 61 EHGEHSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTD 120
EHGEHSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTD
Sbjct 61 EHGEHSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTD 120
Query 121 LLTIRVDLD 129
LLTIRVDLD
Sbjct 121 LLTIRVDLD 129
>gi|298525363|ref|ZP_07012772.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|308231965|ref|ZP_07414428.2| hypothetical protein TMAG_02048 [Mycobacterium tuberculosis SUMu001]
gi|308369546|ref|ZP_07418208.2| hypothetical protein TMBG_00402 [Mycobacterium tuberculosis SUMu002]
26 more sequence titles
Length=125
Score = 255 bits (652), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/125 (100%), Positives = 125/125 (100%), Gaps = 0/125 (0%)
Query 5 MNLKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGE 64
MNLKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGE
Sbjct 1 MNLKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGE 60
Query 65 HSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTI 124
HSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTI
Sbjct 61 HSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTI 120
Query 125 RVDLD 129
RVDLD
Sbjct 121 RVDLD 125
>gi|240170508|ref|ZP_04749167.1| hypothetical protein MkanA1_14440 [Mycobacterium kansasii ATCC
12478]
Length=129
Score = 220 bits (561), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 102/124 (83%), Positives = 117/124 (95%), Gaps = 0/124 (0%)
Query 6 NLKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEH 65
++KR+ VHR QR + NP+GRQLP+TMLETIGRKTGQPRRTAVGG+V+ NQFWMVSEHGEH
Sbjct 6 DVKRQLVHRFQRLIANPLGRQLPLTMLETIGRKTGQPRRTAVGGKVMGNQFWMVSEHGEH 65
Query 66 SDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIR 125
SDYVYNIKANPAVRVRIGG+WR+GTA+LLP+DDPRQRLR LPR+NSA VRA+G+DLLTIR
Sbjct 66 SDYVYNIKANPAVRVRIGGQWRTGTAHLLPEDDPRQRLRDLPRVNSAAVRAIGSDLLTIR 125
Query 126 VDLD 129
VDLD
Sbjct 126 VDLD 129
>gi|118465278|ref|YP_882031.1| hypothetical protein MAV_2845 [Mycobacterium avium 104]
gi|118166565|gb|ABK67462.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=125
Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/125 (85%), Positives = 115/125 (92%), Gaps = 0/125 (0%)
Query 5 MNLKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGE 64
M+LKR VHRVQR +VNP+GRQLPMTMLET GRK+G+PRRTAVGGRVVDNQFWMVSEHGE
Sbjct 1 MSLKRRVVHRVQRLLVNPVGRQLPMTMLETTGRKSGKPRRTAVGGRVVDNQFWMVSEHGE 60
Query 65 HSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTI 124
HSDYV NIKANPAVRVR+GGRWR+GTA+LLPDDDP QRL LPRLNSA VR MG+DLLTI
Sbjct 61 HSDYVRNIKANPAVRVRVGGRWRTGTAHLLPDDDPVQRLGNLPRLNSAMVRLMGSDLLTI 120
Query 125 RVDLD 129
RVDLD
Sbjct 121 RVDLD 125
>gi|41407681|ref|NP_960517.1| hypothetical protein MAP1583c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396034|gb|AAS03900.1| hypothetical protein MAP_1583c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=132
Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/129 (83%), Positives = 117/129 (91%), Gaps = 0/129 (0%)
Query 1 LNAAMNLKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVS 60
LN ++LKR VHRVQR +VNP+GRQLPMTMLET GRK+G+PRRTAVGGRV+DNQFWMVS
Sbjct 4 LNDHVSLKRRVVHRVQRLLVNPVGRQLPMTMLETTGRKSGKPRRTAVGGRVMDNQFWMVS 63
Query 61 EHGEHSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTD 120
EHGEHSDYV NIKANPAVRVR+GGRWR+GTA+LLPDDDP QRL LPRLNSA VR MG+D
Sbjct 64 EHGEHSDYVRNIKANPAVRVRVGGRWRTGTAHLLPDDDPVQRLGNLPRLNSAMVRLMGSD 123
Query 121 LLTIRVDLD 129
LLTIRVDLD
Sbjct 124 LLTIRVDLD 132
>gi|254775321|ref|ZP_05216837.1| hypothetical protein MaviaA2_11706 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=129
Score = 216 bits (551), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 105/129 (82%), Positives = 116/129 (90%), Gaps = 0/129 (0%)
Query 1 LNAAMNLKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVS 60
+N ++LKR VHRVQR +VNP+GRQLPMTMLET GRK+G+PRRTAVGGRVVDNQFWMVS
Sbjct 1 MNDRVSLKRRVVHRVQRLLVNPVGRQLPMTMLETTGRKSGKPRRTAVGGRVVDNQFWMVS 60
Query 61 EHGEHSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTD 120
EHGEHSDYV NIKANPAVRVR+GGRWR+GTA+LLPDDDP QR LPRLNSA VR MG+D
Sbjct 61 EHGEHSDYVRNIKANPAVRVRVGGRWRTGTAHLLPDDDPVQRKGNLPRLNSAMVRLMGSD 120
Query 121 LLTIRVDLD 129
LLTIRVDLD
Sbjct 121 LLTIRVDLD 129
>gi|254819319|ref|ZP_05224320.1| hypothetical protein MintA_05308 [Mycobacterium intracellulare
ATCC 13950]
Length=129
Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 104/129 (81%), Positives = 115/129 (90%), Gaps = 0/129 (0%)
Query 1 LNAAMNLKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVS 60
+N + LKR+ VHRVQR +VNP+GRQLPMTMLET GRK+GQPRRTAVGGRVVDNQFWMVS
Sbjct 1 MNEPVTLKRQVVHRVQRLLVNPVGRQLPMTMLETTGRKSGQPRRTAVGGRVVDNQFWMVS 60
Query 61 EHGEHSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTD 120
EHGEHSDYV NIKANPAVRVR+GG WR+GTA+LLPDDD QRL LPRLNSA VR MG+D
Sbjct 61 EHGEHSDYVRNIKANPAVRVRVGGTWRNGTAHLLPDDDAVQRLGNLPRLNSAMVRLMGSD 120
Query 121 LLTIRVDLD 129
LLT+RVDLD
Sbjct 121 LLTVRVDLD 129
>gi|342861224|ref|ZP_08717872.1| hypothetical protein MCOL_20171 [Mycobacterium colombiense CECT
3035]
gi|342131124|gb|EGT84405.1| hypothetical protein MCOL_20171 [Mycobacterium colombiense CECT
3035]
Length=129
Score = 213 bits (543), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 104/123 (85%), Positives = 113/123 (92%), Gaps = 0/123 (0%)
Query 7 LKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHS 66
LKR+ VHRVQR VVNP+GRQLPMTMLET GRK+GQPRRTAVGGRVVDNQFWMVSEHGEHS
Sbjct 7 LKRQVVHRVQRLVVNPVGRQLPMTMLETTGRKSGQPRRTAVGGRVVDNQFWMVSEHGEHS 66
Query 67 DYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIRV 126
DYV NIKA+PAVRVR+GGRWR+GTA+LLPDDD +RL LPRLNSA VR MG+DLLTIRV
Sbjct 67 DYVRNIKADPAVRVRVGGRWRNGTAHLLPDDDAVRRLGNLPRLNSAVVRLMGSDLLTIRV 126
Query 127 DLD 129
DLD
Sbjct 127 DLD 129
>gi|296164871|ref|ZP_06847427.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899713|gb|EFG79163.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=125
Score = 209 bits (533), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 101/125 (81%), Positives = 115/125 (92%), Gaps = 0/125 (0%)
Query 5 MNLKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGE 64
M+LKR+ VHRVQR +VNP+GRQ+P +LET GRK+G+PRRTAVGGRVVDNQFWMVSEHGE
Sbjct 1 MSLKRQVVHRVQRLLVNPVGRQMPGIILETTGRKSGKPRRTAVGGRVVDNQFWMVSEHGE 60
Query 65 HSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTI 124
HSDYV NIKA+PAVR+RIGG+WRSGTA+LLPDDDP +RL GLPRLNSA VR MG+DLLTI
Sbjct 61 HSDYVRNIKADPAVRLRIGGQWRSGTAHLLPDDDPLRRLGGLPRLNSAVVRLMGSDLLTI 120
Query 125 RVDLD 129
RVDLD
Sbjct 121 RVDLD 125
>gi|118618396|ref|YP_906728.1| hypothetical protein MUL_3004 [Mycobacterium ulcerans Agy99]
gi|183982756|ref|YP_001851047.1| hypothetical protein MMAR_2750 [Mycobacterium marinum M]
gi|118570506|gb|ABL05257.1| conserved protein [Mycobacterium ulcerans Agy99]
gi|183176082|gb|ACC41192.1| conserved protein [Mycobacterium marinum M]
Length=129
Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/124 (81%), Positives = 113/124 (92%), Gaps = 0/124 (0%)
Query 6 NLKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEH 65
+LKR VHR+Q+ VVNPIGRQLP+TMLETIGRK+GQPR TAVGG++VDNQFWMVSEHGEH
Sbjct 6 DLKRRVVHRMQKLVVNPIGRQLPVTMLETIGRKSGQPRHTAVGGKLVDNQFWMVSEHGEH 65
Query 66 SDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIR 125
SDYV NIKANPAVRVR+ G WRSGTA+LLPDDDP QRL LPRLNSA VRA+G++LL+IR
Sbjct 66 SDYVRNIKANPAVRVRLDGEWRSGTAHLLPDDDPLQRLGNLPRLNSAVVRAIGSELLSIR 125
Query 126 VDLD 129
VDLD
Sbjct 126 VDLD 129
>gi|289554355|ref|ZP_06443565.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|289438987|gb|EFD21480.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
Length=159
Score = 206 bits (524), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 98/98 (100%), Positives = 98/98 (100%), Gaps = 0/98 (0%)
Query 5 MNLKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGE 64
MNLKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGE
Sbjct 1 MNLKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGE 60
Query 65 HSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQR 102
HSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQR
Sbjct 61 HSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQR 98
>gi|336457520|gb|EGO36526.1| deazaflavin-dependent nitroreductase family protein [Mycobacterium
avium subsp. paratuberculosis S397]
Length=101
Score = 179 bits (455), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 87/101 (87%), Positives = 94/101 (94%), Gaps = 0/101 (0%)
Query 29 MTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHSDYVYNIKANPAVRVRIGGRWRS 88
MTMLET GRK+G+PRRTAVGGRV+DNQFWMVSEHGEHSDYV NIKANPAVRVR+GGRWR+
Sbjct 1 MTMLETTGRKSGKPRRTAVGGRVMDNQFWMVSEHGEHSDYVRNIKANPAVRVRVGGRWRT 60
Query 89 GTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIRVDLD 129
GTA+LLPDDDP QRL LPRLNSA VR MG+DLLTIRVDLD
Sbjct 61 GTAHLLPDDDPVQRLGNLPRLNSAMVRLMGSDLLTIRVDLD 101
>gi|290959608|ref|YP_003490790.1| hypothetical protein SCAB_52111 [Streptomyces scabiei 87.22]
gi|260649134|emb|CBG72248.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length=159
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/122 (63%), Positives = 95/122 (78%), Gaps = 1/122 (0%)
Query 8 KREFVHRVQRFVVNPIGRQLPM-TMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHS 66
K+ V QR V NP+ R++P+ T+LET GR +G PRRT VGGR V + FW+VSE+GE S
Sbjct 20 KQRAVTAFQRHVANPVLRRIPLQTLLETTGRTSGLPRRTPVGGRRVGDTFWLVSEYGERS 79
Query 67 DYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIRV 126
Y+ NIKA+P+VRVRI GRW +GTA+LLPDDDP RLR LPR+NSA VR +G+ LLT+RV
Sbjct 80 HYIRNIKADPSVRVRIRGRWHTGTAHLLPDDDPVARLRTLPRVNSAAVRVLGSGLLTVRV 139
Query 127 DL 128
DL
Sbjct 140 DL 141
>gi|29830339|ref|NP_824973.1| hypothetical protein SAV_3796 [Streptomyces avermitilis MA-4680]
gi|29607450|dbj|BAC71508.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length=135
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/114 (68%), Positives = 88/114 (78%), Gaps = 1/114 (0%)
Query 16 QRFVVNPIGRQLPM-TMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHSDYVYNIKA 74
QR V NP+ R+LP T+LET GR +G PRRT VGGR V + FW+VSE+GE S Y+ NIKA
Sbjct 16 QRRVGNPVLRRLPFQTVLETTGRTSGLPRRTPVGGRRVGDSFWLVSEYGEKSQYIRNIKA 75
Query 75 NPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIRVDL 128
NP VRVRI G W GTA+LLPDDDPR RL+ LPRLNS VRA GT LLT+RVDL
Sbjct 76 NPTVRVRIRGHWHPGTAHLLPDDDPRARLKTLPRLNSTAVRAFGTGLLTVRVDL 129
>gi|108798563|ref|YP_638760.1| hypothetical protein Mmcs_1593 [Mycobacterium sp. MCS]
gi|119867662|ref|YP_937614.1| hypothetical protein Mkms_1617 [Mycobacterium sp. KMS]
gi|126434161|ref|YP_001069852.1| hypothetical protein Mjls_1563 [Mycobacterium sp. JLS]
gi|108768982|gb|ABG07704.1| hypothetical protein Mmcs_1593 [Mycobacterium sp. MCS]
gi|119693751|gb|ABL90824.1| Mycobacterium tuberculosis paralogous family 11 [Mycobacterium
sp. KMS]
gi|126233961|gb|ABN97361.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=128
Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/123 (59%), Positives = 92/123 (75%), Gaps = 1/123 (0%)
Query 7 LKREFVHRVQRFVVNPIGRQLPM-TMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEH 65
L+ H Q+ + NP+ R+LP T+LET GRK+GQPRRT +GG+ + +QFW VSE GE
Sbjct 4 LRDTVTHTFQKRIANPVMRRLPFQTLLETTGRKSGQPRRTPLGGKRIGDQFWFVSEFGER 63
Query 66 SDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIR 125
S Y+ NIKA+P VRVR+ GRW +G A+L+P+DDP RLR LP+ NS GVR GTDLLT+R
Sbjct 64 SQYIRNIKADPHVRVRLRGRWHTGVAHLVPEDDPHARLRELPQFNSFGVRTFGTDLLTVR 123
Query 126 VDL 128
VDL
Sbjct 124 VDL 126
>gi|302545858|ref|ZP_07298200.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC
53653]
gi|302463476|gb|EFL26569.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC
53653]
Length=131
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/124 (63%), Positives = 91/124 (74%), Gaps = 1/124 (0%)
Query 7 LKREFVHRVQRFVVNPIGRQLPM-TMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEH 65
LK V QR V NPI +LP T+LET GR +G PRRT VGGR V N FW VSE G+
Sbjct 7 LKHRVVTTFQRRVGNPILSRLPFQTLLETTGRTSGLPRRTPVGGRRVGNAFWFVSEFGDR 66
Query 66 SDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIR 125
S YV NI+A+P VRVRI G W +GTA+ LP+DD R RL+GLPR NSA VRA+GTDLLT+R
Sbjct 67 SQYVRNIRADPRVRVRINGTWHTGTAHPLPEDDARARLKGLPRYNSAAVRALGTDLLTVR 126
Query 126 VDLD 129
VDL+
Sbjct 127 VDLN 130
>gi|111018794|ref|YP_701766.1| hypothetical protein RHA1_ro01795 [Rhodococcus jostii RHA1]
gi|110818324|gb|ABG93608.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=131
Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 73/123 (60%), Positives = 91/123 (74%), Gaps = 1/123 (0%)
Query 7 LKREFVHRVQRFVVNPIGRQLP-MTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEH 65
+KR V + QR V NP+ +L T+LET GR +GQPR T +GGR +FW+VSE GE
Sbjct 7 IKRRIVMQFQRHVANPLSTRLSSQTLLETTGRVSGQPRVTPIGGRRTGTEFWLVSEFGER 66
Query 66 SDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIR 125
S+Y+ NI+AN AVR+RI GRW +GTA LLPDDD R RL LPR+NS VRA+GTDLLT+R
Sbjct 67 SNYIRNIRANNAVRLRIHGRWHAGTATLLPDDDARARLAQLPRMNSVAVRAVGTDLLTVR 126
Query 126 VDL 128
+DL
Sbjct 127 IDL 129
>gi|302552173|ref|ZP_07304515.1| conserved hypothetical protein [Streptomyces viridochromogenes
DSM 40736]
gi|302469791|gb|EFL32884.1| conserved hypothetical protein [Streptomyces viridochromogenes
DSM 40736]
Length=130
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/111 (67%), Positives = 88/111 (80%), Gaps = 1/111 (0%)
Query 20 VNPIGRQLPM-TMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHSDYVYNIKANPAV 78
+NP+ R+LP+ T+LET GR +G PR+T VGGR V + FW+VSE GE S YV NIKA+P V
Sbjct 19 INPVLRRLPLQTVLETTGRVSGLPRQTPVGGRRVGDSFWLVSEFGERSQYVRNIKADPWV 78
Query 79 RVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIRVDLD 129
RVRI GRW +GTA+L+PDDDP RLR LPR N GVRA GTDLLT+RVDLD
Sbjct 79 RVRIRGRWHTGTAHLVPDDDPVARLRRLPRFNGLGVRAFGTDLLTVRVDLD 129
>gi|291438997|ref|ZP_06578387.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
14672]
gi|291341892|gb|EFE68848.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
14672]
Length=136
Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/111 (65%), Positives = 87/111 (79%), Gaps = 1/111 (0%)
Query 20 VNPIGRQLPM-TMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHSDYVYNIKANPAV 78
+NP+ R+LP+ T+LET GR +G PRRT VGGR + FW+VSE GE S YV NI+A+P V
Sbjct 25 INPVLRRLPLQTVLETTGRVSGLPRRTPVGGRRTGDSFWLVSEFGERSQYVRNIQADPRV 84
Query 79 RVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIRVDLD 129
RVR+ GRW +GTA+LLPDDDP RLR LPR NSA VRA+G LLT+RVDLD
Sbjct 85 RVRLRGRWHTGTAHLLPDDDPVARLRALPRFNSAAVRALGAGLLTVRVDLD 135
>gi|226360883|ref|YP_002778661.1| hypothetical protein ROP_14690 [Rhodococcus opacus B4]
gi|226239368|dbj|BAH49716.1| hypothetical protein [Rhodococcus opacus B4]
Length=131
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/123 (59%), Positives = 90/123 (74%), Gaps = 1/123 (0%)
Query 7 LKREFVHRVQRFVVNPIGRQLP-MTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEH 65
+KR V + QR V NP+ +L T+LET GR +GQPR T +GGR +FW+VSE GE
Sbjct 7 IKRRIVTQFQRHVANPLSTRLSSQTLLETTGRVSGQPRVTPIGGRRAGTEFWLVSEFGEK 66
Query 66 SDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIR 125
S+Y+ NI+AN AVR+RI GRW +GTA LPDDD R RL LPR+NS VRA+GTDLLT+R
Sbjct 67 SNYIRNIRANNAVRLRIHGRWHTGTATPLPDDDTRARLAQLPRMNSTAVRAVGTDLLTVR 126
Query 126 VDL 128
+DL
Sbjct 127 IDL 129
>gi|297200390|ref|ZP_06917787.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197709509|gb|EDY53543.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length=130
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/116 (63%), Positives = 87/116 (75%), Gaps = 2/116 (1%)
Query 15 VQRFVVNPIGRQLPM-TMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHSDYVYNIK 73
VQR + NP+ R+LP+ T+LET GR +G PR T VGG+ V FW+VSE GE S YV NIK
Sbjct 15 VQRLL-NPVMRRLPLQTLLETTGRTSGLPRSTPVGGKRVGGSFWLVSEFGERSQYVRNIK 73
Query 74 ANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIRVDLD 129
A+P VRVRI GRW +GTA+L+PDDD RLR LP +NSA VRA+G LT+RVDLD
Sbjct 74 ADPRVRVRIRGRWHTGTAHLMPDDDTAVRLRSLPLMNSAAVRAIGAGQLTVRVDLD 129
>gi|120402896|ref|YP_952725.1| hypothetical protein Mvan_1899 [Mycobacterium vanbaalenii PYR-1]
gi|119955714|gb|ABM12719.1| hypothetical protein Mvan_1899 [Mycobacterium vanbaalenii PYR-1]
Length=130
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/127 (54%), Positives = 88/127 (70%), Gaps = 1/127 (0%)
Query 3 AAMNLKREFVHRVQRFVVNPIGRQLPM-TMLETIGRKTGQPRRTAVGGRVVDNQFWMVSE 61
A L+ Q+ V N + RQ+P T+LET GRK+GQPR T +GGR + + FW VSE
Sbjct 2 TADTLRDRVTKFFQKNVANRVMRQMPFQTLLETTGRKSGQPRTTPLGGRRIGDAFWFVSE 61
Query 62 HGEHSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDL 121
G+ S Y+ NI+A+P VRVR+ GRW GTA+LLP+DD R R+R LP N+ GVR GT+L
Sbjct 62 FGDRSQYIRNIQADPNVRVRLNGRWHRGTAHLLPEDDARARMRTLPGYNNVGVRTFGTNL 121
Query 122 LTIRVDL 128
LT+RVDL
Sbjct 122 LTVRVDL 128
>gi|302560096|ref|ZP_07312438.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
gi|302477714|gb|EFL40807.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
Length=134
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/115 (66%), Positives = 87/115 (76%), Gaps = 1/115 (0%)
Query 16 QRFVVNPIGRQLPM-TMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHSDYVYNIKA 74
QR + NP+ R+LP T LET GR +G PRRT VGGR V + FW+VSE GE S Y+ NIKA
Sbjct 19 QRRIANPVLRRLPFQTALETTGRVSGLPRRTPVGGRRVGSSFWLVSEFGERSQYIRNIKA 78
Query 75 NPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIRVDLD 129
+P VRVR+ GRW +GTA+LLPDDDP RLR LPR NSA VRA G LLT+RVDLD
Sbjct 79 DPRVRVRVRGRWHTGTAHLLPDDDPVARLRTLPRFNSAAVRAFGAGLLTVRVDLD 133
>gi|315445410|ref|YP_004078289.1| hypothetical protein Mspyr1_38610 [Mycobacterium sp. Spyr1]
gi|315263713|gb|ADU00455.1| conserved hypothetical protein TIGR00026 [Mycobacterium sp. Spyr1]
Length=129
Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/114 (55%), Positives = 83/114 (73%), Gaps = 1/114 (0%)
Query 16 QRFVVNPIGRQLPM-TMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHSDYVYNIKA 74
Q+ + N + R +P+ T+LET GRK+G PR T +GGR + ++FW VSE G+ S YV NI
Sbjct 14 QKNIANRVMRHIPIQTLLETTGRKSGLPRTTPLGGRRIGDEFWFVSEFGDRSQYVRNIMT 73
Query 75 NPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIRVDL 128
+P VR+R+ GRW G A+LLP+DD + R+R LPR N+ GVR GT+LLTIRVDL
Sbjct 74 DPNVRLRLRGRWHRGIAHLLPEDDAQARMRMLPRYNNVGVRTFGTNLLTIRVDL 127
>gi|145225041|ref|YP_001135719.1| hypothetical protein Mflv_4462 [Mycobacterium gilvum PYR-GCK]
gi|145217527|gb|ABP46931.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=129
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/114 (55%), Positives = 83/114 (73%), Gaps = 1/114 (0%)
Query 16 QRFVVNPIGRQLPM-TMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHSDYVYNIKA 74
Q+ + N + R +P+ T+LET GRK+G PR T +GGR + ++FW VSE G+ S YV NI A
Sbjct 14 QKNIANRVMRHIPIQTLLETTGRKSGLPRTTPLGGRRIGDEFWFVSEFGDRSQYVRNIMA 73
Query 75 NPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIRVDL 128
+ VR+R+ GRW G A+LLP+DD + R+R LPR N+ GVR GT+LLTIRVDL
Sbjct 74 DQNVRLRLRGRWHRGIAHLLPEDDAQARMRMLPRYNNVGVRTFGTNLLTIRVDL 127
>gi|21222815|ref|NP_628594.1| hypothetical protein SCO4427 [Streptomyces coelicolor A3(2)]
gi|7635937|emb|CAB88434.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Length=139
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/113 (63%), Positives = 85/113 (76%), Gaps = 3/113 (2%)
Query 20 VNPIGRQLP-MTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHSDYVYNIKANPAV 78
+N + R+LP T+LET GR +G PRRT VGGR + FW+VSE GE S Y+ NI+A+P V
Sbjct 21 LNAVVRRLPGQTLLETTGRVSGLPRRTPVGGRREGDSFWLVSEFGERSQYIRNIRADPRV 80
Query 79 RVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAM--GTDLLTIRVDLD 129
RVRI GRW GTA+LLPDDDP RLR LPRLNS VRAM GT LLT+RV+L+
Sbjct 81 RVRIRGRWHPGTAHLLPDDDPLARLRRLPRLNSVAVRAMGVGTGLLTVRVELE 133
>gi|209974332|gb|ACJ04046.1| SLD6.05c [Streptomyces lividans]
Length=139
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/113 (62%), Positives = 84/113 (75%), Gaps = 3/113 (2%)
Query 20 VNPIGRQLP-MTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHSDYVYNIKANPAV 78
+N + R+LP T+LET GR +G PRRT VGGR + FW+VSE GE S Y+ NI+A+P V
Sbjct 21 LNAVVRRLPGQTLLETTGRVSGLPRRTPVGGRREGDSFWLVSEFGERSQYIRNIRADPRV 80
Query 79 RVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAM--GTDLLTIRVDLD 129
RVRI GRW GTA+LLPDDDP RLR LPRLNS VR M GT LLT+RV+L+
Sbjct 81 RVRIRGRWHPGTAHLLPDDDPLARLRRLPRLNSVAVRTMGVGTGLLTVRVELE 133
>gi|289770005|ref|ZP_06529383.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|289700204|gb|EFD67633.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length=139
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/113 (62%), Positives = 84/113 (75%), Gaps = 3/113 (2%)
Query 20 VNPIGRQLP-MTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHSDYVYNIKANPAV 78
+N + R+LP T+LET GR +G PRRT VGGR + FW+VSE GE S Y+ NI+A+P V
Sbjct 21 LNAVVRRLPGQTLLETTGRVSGLPRRTPVGGRREGDSFWLVSEFGERSQYIRNIRADPRV 80
Query 79 RVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAM--GTDLLTIRVDLD 129
RVRI GRW GTA+LLPDDDP RLR LPRLNS VR M GT LLT+RV+L+
Sbjct 81 RVRIRGRWHPGTAHLLPDDDPLARLRRLPRLNSVAVRTMGVGTGLLTVRVELE 133
>gi|15828106|ref|NP_302369.1| hypothetical protein ML2048 [Mycobacterium leprae TN]
gi|221230583|ref|YP_002503999.1| hypothetical protein MLBr_02048 [Mycobacterium leprae Br4923]
gi|25398140|pir||C87165 conserved hypothetical protein ML2048 [imported] - Mycobacterium
leprae
gi|13093660|emb|CAC31003.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933690|emb|CAR72145.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=85
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/74 (65%), Positives = 57/74 (78%), Gaps = 0/74 (0%)
Query 6 NLKREFVHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEH 65
+LK++ ++ +Q VVN +G QLP TMLETI RKTGQP RTA G VDNQF MV E+ E+
Sbjct 6 DLKQKVIYSIQWLVVNSLGHQLPRTMLETIRRKTGQPWRTAAGVHPVDNQFGMVCENSEY 65
Query 66 SDYVYNIKANPAVR 79
SDYVYNIKAN AVR
Sbjct 66 SDYVYNIKANTAVR 79
>gi|284045200|ref|YP_003395540.1| hypothetical protein Cwoe_3748 [Conexibacter woesei DSM 14684]
gi|283949421|gb|ADB52165.1| hypothetical protein Cwoe_3748 [Conexibacter woesei DSM 14684]
Length=145
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/143 (47%), Positives = 87/143 (61%), Gaps = 18/143 (12%)
Query 5 MNLKREFVHRVQRFVVNPIGRQL--------PMTMLETIGRKTGQPRRTAVGGRVVDNQF 56
M +KR V Q + NP+ ++L +LET GR++G PR+T VG +V QF
Sbjct 1 MTVKRAIVSTFQNRIANPLIKRLLARGWVPPGYALLETTGRRSGLPRQTPVGDGLVGEQF 60
Query 57 WMVSEHGEHSDYVYNIKANPAVRVRIGGR----WRSGTAYLLPDDDPRQRLRGLP----- 107
W+V+EHG H+ YV NI A+P VRVR+ WRSGTA++LPDDD R+R R L
Sbjct 61 WIVAEHGAHAAYVRNIAADPRVRVRVREGRRQLWRSGTAHVLPDDDARERQRWLAGTGPG 120
Query 108 -RLNSAGVRAMGTDLLTIRVDLD 129
N+ VRA GTDL T+R+DLD
Sbjct 121 RAANARAVRAFGTDLTTVRIDLD 143
>gi|183983543|ref|YP_001851834.1| hypothetical protein MMAR_3562 [Mycobacterium marinum M]
gi|183176869|gb|ACC41979.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=142
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/120 (41%), Positives = 69/120 (58%), Gaps = 8/120 (6%)
Query 17 RFVVNP-------IG-RQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHSDY 68
R+++NP +G R T LETIGRK+GQ RR V + N W++ +HG S +
Sbjct 21 RYLLNPAVKGMGKLGLRTALATELETIGRKSGQARRVPVSAQFDANGAWIICQHGTRSGW 80
Query 69 VYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIRVDL 128
NI NP +R+R G RWR+G A L PDDD R R RL + V+A+ T +++R+D
Sbjct 81 GRNIVDNPNIRIRQGTRWRTGVATLRPDDDVVARGRKFGRLGATVVKALETTPVSVRIDF 140
>gi|169631710|ref|YP_001705359.1| hypothetical protein MAB_4636 [Mycobacterium abscessus ATCC 19977]
gi|169243677|emb|CAM64705.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=160
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/120 (41%), Positives = 68/120 (57%), Gaps = 8/120 (6%)
Query 17 RFVVNP-IG-------RQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHSDY 68
R+++NP +G R + LET GRKTGQ RR V + W++ +HG S +
Sbjct 39 RYLLNPAVGALAKLGVRTALASELETTGRKTGQLRRVPVSVQFDSTGAWVICQHGTRSGW 98
Query 69 VYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIRVDL 128
NI ANP VRVR G RWR+GTA PDDD R RG + + V+A+ T +++R+D
Sbjct 99 GSNIAANPNVRVRQGNRWRTGTAQFRPDDDVVARGRGFGVIGARVVKALETTPISVRIDF 158
>gi|118618231|ref|YP_906563.1| hypothetical protein MUL_2795 [Mycobacterium ulcerans Agy99]
gi|118570341|gb|ABL05092.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=142
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/120 (41%), Positives = 68/120 (57%), Gaps = 8/120 (6%)
Query 17 RFVVNP-------IG-RQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHSDY 68
R+++NP +G R T LETIGRKTGQ RR V + N W++ +HG S +
Sbjct 21 RYLLNPAVKGMGKLGLRTALATGLETIGRKTGQARRVPVSAQFDANGAWIICQHGTRSGW 80
Query 69 VYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRLNSAGVRAMGTDLLTIRVDL 128
NI NP +R+R G RW +G A L PDDD R R RL + V+A+ T +++R+D
Sbjct 81 GRNIVDNPNIRIRQGTRWPTGVAALRPDDDVVARGRKFGRLGATVVKALETTPVSVRIDF 140
>gi|333922117|ref|YP_004495698.1| putative oxidoreductase [Amycolicicoccus subflavus DQS3-9A1]
gi|333484338|gb|AEF42898.1| Putative oxidoreductase [Amycolicicoccus subflavus DQS3-9A1]
Length=595
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/134 (36%), Positives = 69/134 (52%), Gaps = 13/134 (9%)
Query 8 KREFVHRVQRFVVNPIGRQLP--------MTMLETIGRKTGQPRRTAVGGRVVDNQFWMV 59
K +F V R++ NP R L T LETIGRK+G RR V W++
Sbjct 459 KFKFERAVGRYIANPAVRVLSNLGVRTSFATELETIGRKSGLTRRVPVSAAFDATGAWVI 518
Query 60 SEHGEHSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLR-----GLPRLNSAGV 114
S+HG+ S + NI A P VR+R G RWR+G A PDDD R R + + +AG
Sbjct 519 SQHGKRSGWGLNITATPTVRIRQGNRWRTGIAEFRPDDDVTARARTFGPQAIAGITAAGF 578
Query 115 RAMGTDLLTIRVDL 128
+A+ + +++R+
Sbjct 579 QALQSTPISVRISF 592
>gi|317507514|ref|ZP_07965238.1| hypothetical protein HMPREF9336_01610 [Segniliparus rugosus ATCC
BAA-974]
gi|316254201|gb|EFV13547.1| hypothetical protein HMPREF9336_01610 [Segniliparus rugosus ATCC
BAA-974]
Length=147
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/138 (39%), Positives = 71/138 (52%), Gaps = 20/138 (14%)
Query 6 NLKREF--VHRVQRFVVNPIGRQLP---------MTMLETIGRKTGQPRRTAVGGRVVDN 54
N +R F + V R+ +NP R + LETIGRKTGQ RR V +
Sbjct 7 NARRMFRVIRAVGRYALNPSARFFAKLGLVPTSQVAELETIGRKTGQLRRVPVSPIFDET 66
Query 55 QFWMVSEHGEHSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGL----PRLN 110
W++ HG S + NI ANP VR++ G RWR+G A +PDDD R R+R PR+
Sbjct 67 GAWVICGHGTLSGWGSNISANPNVRIQQGKRWRAGVASFVPDDDIRARVRQASTFGPRIA 126
Query 111 SAGVRAMGTDLLTIRVDL 128
S GT +T+R+D
Sbjct 127 S-----YGTAPVTVRIDF 139
>gi|296140649|ref|YP_003647892.1| hypothetical protein Tpau_2957 [Tsukamurella paurometabola DSM
20162]
gi|296028783|gb|ADG79553.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=154
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/128 (36%), Positives = 67/128 (53%), Gaps = 14/128 (10%)
Query 15 VQRFVVNPIGRQL--------PMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHS 66
+ R+V NPI R L T LET GR++G PR V D+ W+VS+HG S
Sbjct 23 IGRYVANPIVRGLHRLGVRTTLATTLETTGRRSGLPRTVPVAATFDDDGAWIVSQHGRRS 82
Query 67 DYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLR------GLPRLNSAGVRAMGTD 120
+ N+ A+PAVR+ G WR+G PDDD R+R L + ++ RA+ +D
Sbjct 83 GWAINVAADPAVRIFQGETWRAGVGEFRPDDDAIARMRTFAPNAALAGVTTSAFRALASD 142
Query 121 LLTIRVDL 128
+++R+
Sbjct 143 PISVRITF 150
>gi|229493878|ref|ZP_04387650.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229319155|gb|EEN85004.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=151
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/106 (34%), Positives = 59/106 (56%), Gaps = 6/106 (5%)
Query 29 MTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHSDYVYNIKANPAVRVRIGGRWRS 88
MT +ET+GR+TG RR V ++ W++++HG + + NI A P VR+R G W
Sbjct 39 MTEIETVGRRTGLTRRVPVAITYDGDEAWVIAQHGTGTGWGANISATPKVRIRRRGEWVD 98
Query 89 GTAYLLPDDDPRQRLRGLPR------LNSAGVRAMGTDLLTIRVDL 128
G A ++PDDD R++ L ++ R + TD +++R+ L
Sbjct 99 GQAQIMPDDDVPARVKTFASGKIRSALTASAFRGLQTDPVSVRIRL 144
>gi|226307729|ref|YP_002767689.1| hypothetical protein RER_42420 [Rhodococcus erythropolis PR4]
gi|226186846|dbj|BAH34950.1| hypothetical protein RER_42420 [Rhodococcus erythropolis PR4]
Length=151
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/136 (31%), Positives = 68/136 (50%), Gaps = 14/136 (10%)
Query 8 KREFVHRVQRFVVNPIGRQLP--------MTMLETIGRKTGQPRRTAVGGRVVDNQFWMV 59
KR V ++ NP+ L MT +ET+GR+TG RR V ++ W++
Sbjct 10 KRRIEVAVGKYFANPLVTGLNRIGLMPSLMTEIETVGRRTGLTRRVPVAITYDGDEAWVI 69
Query 60 SEHGEHSDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPR------LNSAG 113
++HG + NI A P VR+R G W G A ++PDDD R++ L ++
Sbjct 70 AQHGIDRGWGANISATPKVRIRRRGEWVDGQAQIMPDDDVPARVKTFTSGKFRSALTASA 129
Query 114 VRAMGTDLLTIRVDLD 129
R + TD +++R+ L+
Sbjct 130 FRGLQTDPVSVRIRLE 145
>gi|269839007|ref|YP_003323699.1| hypothetical protein Tter_1971 [Thermobaculum terrenum ATCC BAA-798]
gi|269790737|gb|ACZ42877.1| hypothetical protein Tter_1971 [Thermobaculum terrenum ATCC BAA-798]
Length=127
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/72 (38%), Positives = 43/72 (60%), Gaps = 0/72 (0%)
Query 32 LETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHSDYVYNIKANPAVRVRIGGRWRSGTA 91
L T+GR+TG+P R + V D + +++S + SD+V NI+ANP V + +GG +G A
Sbjct 23 LTTVGRRTGRPHRIEIWFAVADGRVYLLSGGRDRSDWVRNIRANPQVTLELGGEVHTGKA 82
Query 92 YLLPDDDPRQRL 103
+L D +L
Sbjct 83 RVLQPDTAEDQL 94
>gi|221633124|ref|YP_002522349.1| hypothetical protein trd_1140 [Thermomicrobium roseum DSM 5159]
gi|221156846|gb|ACM05973.1| conserved hypothetical protein TIGR00026 [Thermomicrobium roseum
DSM 5159]
Length=173
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/76 (41%), Positives = 46/76 (61%), Gaps = 5/76 (6%)
Query 29 MTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEH-GEHSDYVYNIKANPAVRVRIGGR-W 86
+ +L TIGRKTG PRRTAV +D++F + + G +D+ N+ A+P V VR G + W
Sbjct 41 VILLTTIGRKTGLPRRTAVSAMRLDDRFIVFAGFAGVRADWYRNLLAHPEVVVRAGNQCW 100
Query 87 RSGTAYLLPDDDPRQR 102
R+ +L DP +R
Sbjct 101 RATARVVL---DPAER 113
>gi|111021649|ref|YP_704621.1| hypothetical protein RHA1_ro04677 [Rhodococcus jostii RHA1]
gi|110821179|gb|ABG96463.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=161
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/93 (36%), Positives = 52/93 (56%), Gaps = 16/93 (17%)
Query 25 RQLPMTMLETIGRKTGQPRRTAV-----GGRVVDNQFWMVSEHG---EHSDYVYNIKANP 76
R LP+ +L T GRK+G+PR + + G R++ +V+ G +H + N++ANP
Sbjct 51 RGLPVCLLTTTGRKSGEPRISPLLFLEDGDRII-----LVASQGGLPKHPMWYLNLRANP 105
Query 77 AVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRL 109
V V++ R R TA++ DP +R R PRL
Sbjct 106 DVTVQVKSRVRPMTAHV---ADPEERARLWPRL 135
>gi|269838393|ref|YP_003320621.1| hypothetical protein Sthe_2382 [Sphaerobacter thermophilus DSM
20745]
gi|269787656|gb|ACZ39799.1| hypothetical protein Sthe_2382 [Sphaerobacter thermophilus DSM
20745]
Length=169
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/98 (32%), Positives = 53/98 (55%), Gaps = 3/98 (3%)
Query 9 REFVHRVQRFVVNPIG---RQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEH 65
R F+ ++ R P+ R + +L T GRK+G PR T V + +++ + S G
Sbjct 18 RFFLKQLPRLYRGPLSELFRWRCVMLLTTTGRKSGLPRTTGVSFMPLGDRYVIFSGWGVR 77
Query 66 SDYVYNIKANPAVRVRIGGRWRSGTAYLLPDDDPRQRL 103
S++ N++ANP V +++G R TA L+ D + R+ L
Sbjct 78 SNWYKNLRANPEVIIQVGRRRMRATARLVEDPERRRDL 115
>gi|317507943|ref|ZP_07965638.1| hypothetical protein HMPREF9336_02010 [Segniliparus rugosus ATCC
BAA-974]
gi|316253754|gb|EFV13129.1| hypothetical protein HMPREF9336_02010 [Segniliparus rugosus ATCC
BAA-974]
Length=177
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/93 (37%), Positives = 48/93 (52%), Gaps = 13/93 (13%)
Query 19 VVNPIGRQLPMTMLETIGRKTGQPRRTAV-----GGR--VVDNQFWMVSEHGEHSDYVYN 71
V+ PIG +P+ +L T GRKTGQPR+ + GGR VV F G H + N
Sbjct 55 VLGPIG--MPLLVLTTTGRKTGQPRQQPLTYVRDGGRLVVVGTNF----GQGHHPAWTSN 108
Query 72 IKANPAVRVRIGGRWRSGTAYLLPDDDPRQRLR 104
+ A+P V +GG A LL ++ ++ LR
Sbjct 109 LLADPRAEVTVGGATVPAVATLLRGEEQQRFLR 141
>gi|118471984|ref|YP_887322.1| hypothetical protein MSMEG_3004 [Mycobacterium smegmatis str.
MC2 155]
gi|118173271|gb|ABK74167.1| conserved hypothetical protein TIGR00026 [Mycobacterium smegmatis
str. MC2 155]
Length=151
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (33%), Positives = 39/73 (54%), Gaps = 3/73 (4%)
Query 29 MTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHG---EHSDYVYNIKANPAVRVRIGGR 85
+ +L T G K+GQPR + + VD + +V + +H +V+N++ANP + IG
Sbjct 45 LLLLHTTGAKSGQPRVSPLAYLPVDGKILIVGSYAGGPKHPAWVHNLRANPNAHIEIGTE 104
Query 86 WRSGTAYLLPDDD 98
A LPDD+
Sbjct 105 AYDVVARELPDDE 117
>gi|226364186|ref|YP_002781968.1| hypothetical protein ROP_47760 [Rhodococcus opacus B4]
gi|226242675|dbj|BAH53023.1| hypothetical protein [Rhodococcus opacus B4]
Length=169
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/93 (37%), Positives = 50/93 (54%), Gaps = 16/93 (17%)
Query 25 RQLPMTMLETIGRKTGQPRRTAV-----GGRVVDNQFWMVSEHG---EHSDYVYNIKANP 76
R LP+ +L T GRK+G PR + + G R+V +V+ G +H + N++ANP
Sbjct 59 RGLPVCLLTTTGRKSGDPRISPLLFLEDGDRIV-----LVASQGGLPKHPMWYLNLRANP 113
Query 77 AVRVRIGGRWRSGTAYLLPDDDPRQRLRGLPRL 109
V V++ R R TA + DP +R R PRL
Sbjct 114 QVTVQVKSRVRPMTAQVA---DPGERARLWPRL 143
>gi|240172639|ref|ZP_04751298.1| hypothetical protein MkanA1_25215 [Mycobacterium kansasii ATCC
12478]
Length=154
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/89 (31%), Positives = 48/89 (54%), Gaps = 4/89 (4%)
Query 28 PMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHG---EHSDYVYNIKANPAVRVRIGG 84
P +L T+G KTGQPR T++ + + +V+ +G H + +N++ +P + +G
Sbjct 39 PCLLLHTVGAKTGQPRTTSLAYARDGDSYLIVASNGGADRHPGWYHNLRKHPQCEINLGP 98
Query 85 RWRSGTA-YLLPDDDPRQRLRGLPRLNSA 112
R + TA ++PDD R+ L N+A
Sbjct 99 RRLAVTARRVIPDDADYSRMWQLANKNTA 127
>gi|326382027|ref|ZP_08203720.1| hypothetical protein SCNU_03747 [Gordonia neofelifaecis NRRL
B-59395]
gi|326199453|gb|EGD56634.1| hypothetical protein SCNU_03747 [Gordonia neofelifaecis NRRL
B-59395]
Length=124
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/94 (33%), Positives = 45/94 (48%), Gaps = 6/94 (6%)
Query 12 VHRVQRFVVNPI-----GRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMVSEHGEHS 66
V R+ ++V NPI R P ++E IGRK+ + RT V V D + + +G S
Sbjct 7 VARINKYVTNPIQGLWADRLAPWAVVEHIGRKSNRQYRTPVLAFVDDGRISIALNYGTES 66
Query 67 DYVYNI-KANPAVRVRIGGRWRSGTAYLLPDDDP 99
D+V N+ A +R G A +LP D P
Sbjct 67 DWVKNVLAAGEFTLIREGKPLAIAGARILPSDSP 100
>gi|183982309|ref|YP_001850600.1| hypothetical protein MMAR_2296 [Mycobacterium marinum M]
gi|183175635|gb|ACC40745.1| conserved membrane protein [Mycobacterium marinum M]
Length=155
Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (54%), Gaps = 7/80 (8%)
Query 29 MTMLETIGRKTGQPRRTAVGGRVVD----NQFWMVSEHGEHSDYVYNIKANPAVRVRIGG 84
M MLE IGRK+G PR + VVD + + + S G++S + NI ANP VRV +G
Sbjct 37 MLMLEHIGRKSGTPRNAVL--EVVDHPTPDTYVIASGFGKNSQWFRNIVANPRVRVYVGS 94
Query 85 -RWRSGTAYLLPDDDPRQRL 103
R TA +L + Q L
Sbjct 95 HRAAPATARVLEQAEADQAL 114
>gi|118617159|ref|YP_905491.1| hypothetical protein MUL_1499 [Mycobacterium ulcerans Agy99]
gi|118569269|gb|ABL04020.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=144
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (54%), Gaps = 7/80 (8%)
Query 29 MTMLETIGRKTGQPRRTAVGGRVVD----NQFWMVSEHGEHSDYVYNIKANPAVRVRIGG 84
M MLE IGRK+G PR + VVD + + + S G++S + NI ANP VRV +G
Sbjct 26 MLMLEHIGRKSGTPRNAVL--EVVDHPAPDTYVIASGFGKNSQWYRNIVANPRVRVYVGS 83
Query 85 -RWRSGTAYLLPDDDPRQRL 103
R TA +L + Q L
Sbjct 84 HRAAPATARVLEQAEADQAL 103
>gi|297159709|gb|ADI09421.1| hypothetical protein SBI_06301 [Streptomyces bingchenggensis
BCW-1]
Length=172
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/78 (35%), Positives = 38/78 (49%), Gaps = 4/78 (5%)
Query 12 VHRVQRFVVNPIGRQLPMTMLETIGRKTGQPRRTAVGGRVVDNQFWMV--SEHGE--HSD 67
VHR+ R V P R LP +L T G ++G PRRT + D W++ S G H
Sbjct 39 VHRLTRGKVLPSARMLPGVILTTTGARSGLPRRTPLACMPEDGGTWLLIGSNFGRPGHPA 98
Query 68 YVYNIKANPAVRVRIGGR 85
+ N+ A+P + GR
Sbjct 99 WTANLLAHPDAEISWKGR 116
Lambda K H
0.323 0.139 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128283502052
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40