BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1884c

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841354|ref|NP_336391.1|  hypothetical protein MT1932 [Mycoba...   350    3e-95
gi|15609021|ref|NP_216400.1|  resuscitation-promoting factor RpfC...   350    4e-95
gi|340626892|ref|YP_004745344.1|  putative resuscitation-promotin...   349    1e-94
gi|289554342|ref|ZP_06443552.1|  resuscitation-promoting factor r...   348    1e-94
gi|253799072|ref|YP_003032073.1|  resuscitation-promoting factor ...   347    3e-94
gi|323719626|gb|EGB28749.1|  resuscitation-promoting factor rpfC ...   283    8e-75
gi|308231968|ref|ZP_07414442.2|  resuscitation-promoting factor r...   278    3e-73
gi|41407705|ref|NP_960541.1|  hypothetical protein MAP1607c [Myco...   212    1e-53
gi|296164903|ref|ZP_06847459.1|  transglycosylase domain protein ...   203    9e-51
gi|336457545|gb|EGO36551.1|  transglycosylase-like protein [Mycob...   199    2e-49
gi|15828097|ref|NP_302360.1|  hypothetical protein ML2030 [Mycoba...   198    3e-49
gi|342859533|ref|ZP_08716186.1|  hypothetical protein MCOL_11658 ...   195    2e-48
gi|118464653|ref|YP_882005.1|  resuscitation-promoting factor Rpf...   172    2e-41
gi|254819297|ref|ZP_05224298.1|  hypothetical protein MintA_05188...   166    1e-39
gi|118618374|ref|YP_906706.1|  resuscitation-promoting factor-lik...   160    7e-38
gi|183982778|ref|YP_001851069.1|  resuscitation-promoting factor-...   155    2e-36
gi|240170530|ref|ZP_04749189.1|  resuscitation-promoting factor-l...   153    8e-36
gi|118469017|ref|YP_888904.1|  hypothetical protein MSMEG_4640 [M...   127    7e-28
gi|120404915|ref|YP_954744.1|  transglycosylase domain-containing...   126    2e-27
gi|145223207|ref|YP_001133885.1|  transglycosylase domain-contain...   124    5e-27
gi|333990993|ref|YP_004523607.1|  resuscitation-promoting [Mycoba...   123    1e-26
gi|169631158|ref|YP_001704807.1|  hypothetical protein MAB_4080c ...   122    2e-26
gi|108800529|ref|YP_640726.1|  transglycosylase-like protein [Myc...   120    9e-26
gi|333990096|ref|YP_004522710.1|  resuscitation-promoting factor-...   116    1e-24
gi|108799874|ref|YP_640071.1|  transglycosylase-like protein [Myc...   116    1e-24
gi|331699477|ref|YP_004335716.1|  transglycosylase-like domain-co...   115    2e-24
gi|256379283|ref|YP_003102943.1|  transglycosylase domain-contain...   115    2e-24
gi|220911770|ref|YP_002487079.1|  transglycosylase [Arthrobacter ...   115    2e-24
gi|119868984|ref|YP_938936.1|  transglycosylase domain-containing...   115    3e-24
gi|296140721|ref|YP_003647964.1|  transglycosylase domain-contain...   114    4e-24
gi|326383331|ref|ZP_08205019.1|  transglycosylase domain-containi...   114    8e-24
gi|108800530|ref|YP_640727.1|  transglycosylase-like protein [Myc...   113    1e-23
gi|302530572|ref|ZP_07282914.1|  predicted protein [Streptomyces ...   113    1e-23
gi|257067476|ref|YP_003153731.1|  transglycosylase-like protein [...   113    1e-23
gi|120404916|ref|YP_954745.1|  transglycosylase domain-containing...   112    3e-23
gi|257057377|ref|YP_003135209.1|  transglycosylase family protein...   111    3e-23
gi|116669469|ref|YP_830402.1|  transglycosylase domain-containing...   111    3e-23
gi|15609526|ref|NP_216905.1|  resuscitation-promoting factor RpfD...   110    1e-22
gi|126437075|ref|YP_001072766.1|  transglycosylase domain-contain...   109    1e-22
gi|343924791|ref|ZP_08764330.1|  putative resuscitation-promoting...   109    1e-22
gi|325962335|ref|YP_004240241.1|  transglycosylase family protein...   109    1e-22
gi|167968732|ref|ZP_02551009.1|  resuscitation-promoting factor r...   109    1e-22
gi|169628687|ref|YP_001702336.1|  hypothetical protein MAB_1597 [...   108    4e-22
gi|262203254|ref|YP_003274462.1|  transglycosylase [Gordonia bron...   107    6e-22
gi|229490962|ref|ZP_04384795.1|  secreted protein [Rhodococcus er...   107    6e-22
gi|300790325|ref|YP_003770616.1|  hypothetical protein AMED_8518 ...   107    6e-22
gi|226305719|ref|YP_002765679.1|  resuscitation-promoting factor ...   107    6e-22
gi|325003415|ref|ZP_08124527.1|  resuscitation-promoting factor [...   107    7e-22
gi|315441569|ref|YP_004074446.1|  transglycosylase-like protein [...   107    7e-22
gi|163841267|ref|YP_001625672.1|  transglycosylase family protein...   107    9e-22


>gi|15841354|ref|NP_336391.1| hypothetical protein MT1932 [Mycobacterium tuberculosis CDC1551]
 gi|254232061|ref|ZP_04925388.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
C]
 gi|13881587|gb|AAK46205.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|124601120|gb|EAY60130.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
C]
Length=188

 Score =  350 bits (899),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 176/176 (100%), Positives = 176/176 (100%), Gaps = 0/176 (0%)

Query  1    VHPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL  60
            VHPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL
Sbjct  13   VHPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL  72

Query  61   STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ  120
            STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ
Sbjct  73   STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ  132

Query  121  QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR  176
            QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR
Sbjct  133  QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR  188


>gi|15609021|ref|NP_216400.1| resuscitation-promoting factor RpfC [Mycobacterium tuberculosis 
H37Rv]
 gi|31793075|ref|NP_855568.1| resuscitation-promoting factor RpfC [Mycobacterium bovis AF2122/97]
 gi|121637788|ref|YP_978011.1| putative resuscitation-promoting factor rpfC [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
 35 more sequence titles
 Length=176

 Score =  350 bits (899),  Expect = 4e-95, Method: Compositional matrix adjust.
 Identities = 175/176 (99%), Positives = 176/176 (100%), Gaps = 0/176 (0%)

Query  1    VHPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL  60
            +HPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL
Sbjct  1    MHPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL  60

Query  61   STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ  120
            STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ
Sbjct  61   STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ  120

Query  121  QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR  176
            QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR
Sbjct  121  QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR  176


>gi|340626892|ref|YP_004745344.1| putative resuscitation-promoting factor RPFC [Mycobacterium canettii 
CIPT 140010059]
 gi|340005082|emb|CCC44231.1| putative resuscitation-promoting factor RPFC [Mycobacterium canettii 
CIPT 140010059]
Length=176

 Score =  349 bits (895),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 174/176 (99%), Positives = 176/176 (100%), Gaps = 0/176 (0%)

Query  1    VHPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL  60
            ++PLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL
Sbjct  1    MYPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL  60

Query  61   STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ  120
            STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ
Sbjct  61   STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ  120

Query  121  QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR  176
            QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR
Sbjct  121  QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR  176


>gi|289554342|ref|ZP_06443552.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
KZN 605]
 gi|289438974|gb|EFD21467.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
KZN 605]
Length=181

 Score =  348 bits (894),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 175/176 (99%), Positives = 175/176 (99%), Gaps = 0/176 (0%)

Query  1    VHPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL  60
            VHPLPADHGRSRCNR PISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL
Sbjct  6    VHPLPADHGRSRCNRRPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL  65

Query  61   STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ  120
            STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ
Sbjct  66   STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ  125

Query  121  QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR  176
            QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR
Sbjct  126  QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR  181


>gi|253799072|ref|YP_003032073.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
KZN 1435]
 gi|254550896|ref|ZP_05141343.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289762035|ref|ZP_06521413.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
GM 1503]
 7 more sequence titles
 Length=176

 Score =  347 bits (891),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 174/176 (99%), Positives = 175/176 (99%), Gaps = 0/176 (0%)

Query  1    VHPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL  60
            +HPLPADHGRSRCNR PISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL
Sbjct  1    MHPLPADHGRSRCNRRPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL  60

Query  61   STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ  120
            STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ
Sbjct  61   STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ  120

Query  121  QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR  176
            QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR
Sbjct  121  QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR  176


>gi|323719626|gb|EGB28749.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
CDC1551A]
Length=143

 Score =  283 bits (723),  Expect = 8e-75, Method: Compositional matrix adjust.
 Identities = 143/143 (100%), Positives = 143/143 (100%), Gaps = 0/143 (0%)

Query  34   MSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGK  93
            MSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGK
Sbjct  1    MSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGK  60

Query  94   YGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSK  153
            YGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSK
Sbjct  61   YGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSK  120

Query  154  PAQGIKQIINEIIWAGIQASIPR  176
            PAQGIKQIINEIIWAGIQASIPR
Sbjct  121  PAQGIKQIINEIIWAGIQASIPR  143


>gi|308231968|ref|ZP_07414442.2| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
SUMu001]
 gi|308369549|ref|ZP_07418224.2| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
SUMu002]
 gi|308370848|ref|ZP_07422950.2| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis 
SUMu003]
 23 more sequence titles
 Length=140

 Score =  278 bits (710),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 140/140 (100%), Positives = 140/140 (100%), Gaps = 0/140 (0%)

Query  37   MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG  96
            MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG
Sbjct  1    MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG  60

Query  97   LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQ  156
            LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQ
Sbjct  61   LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQ  120

Query  157  GIKQIINEIIWAGIQASIPR  176
            GIKQIINEIIWAGIQASIPR
Sbjct  121  GIKQIINEIIWAGIQASIPR  140


>gi|41407705|ref|NP_960541.1| hypothetical protein MAP1607c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41396058|gb|AAS03924.1| hypothetical protein MAP_1607c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=170

 Score =  212 bits (540),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 107/163 (66%), Positives = 125/163 (77%), Gaps = 4/163 (2%)

Query  14   NRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNW  73
            +R  IS    IGNA AT  ++  MT + K L+KS +  G V ASM+ ST V  A P+PNW
Sbjct  12   DRRHISRHFRIGNALATRAEILDMTNLCKLLVKSVVVGGFVAASMASSTGVVSAEPTPNW  71

Query  74   DAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQG  133
            DA+AQCESGGNW ANTGNG+YGGLQFKPATWA +GGVGNPAAASREQQIAVANRV AE+G
Sbjct  72   DAIAQCESGGNWHANTGNGEYGGLQFKPATWARYGGVGNPAAASREQQIAVANRVFAEEG  131

Query  134  LDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR  176
            ++ WP CGA SGLPI  +S PAQGIKQIIN +    IQA++PR
Sbjct  132  VEPWPKCGAQSGLPIGWYSHPAQGIKQIINGL----IQAAVPR  170


>gi|296164903|ref|ZP_06847459.1| transglycosylase domain protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899745|gb|EFG79195.1| transglycosylase domain protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=149

 Score =  203 bits (516),  Expect = 9e-51, Method: Compositional matrix adjust.
 Identities = 100/153 (66%), Positives = 120/153 (79%), Gaps = 4/153 (2%)

Query  24   IGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGG  83
            +GNA AT+ ++  M  + KPL+KS    G V AS++ ST+V  A P+PNWDA+AQCESGG
Sbjct  1    MGNALATAAEIQDMKILCKPLVKSLAVGGFVAASIASSTSVVSAAPTPNWDAIAQCESGG  60

Query  84   NWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAA  143
            NW ANTGNG YGGLQFKP TW  +GGVGNPAAASREQQIAVANRV A+QG++AWP CGAA
Sbjct  61   NWHANTGNGNYGGLQFKPGTWQRYGGVGNPAAASREQQIAVANRVFADQGVEAWPKCGAA  120

Query  144  SGLPIALWSKPAQGIKQIINEIIWAGIQASIPR  176
            SGLPI  +S PAQGIK+IIN +    IQA++P 
Sbjct  121  SGLPIGWYSHPAQGIKEIINGL----IQAAVPH  149


>gi|336457545|gb|EGO36551.1| transglycosylase-like protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=136

 Score =  199 bits (505),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 98/140 (70%), Positives = 113/140 (81%), Gaps = 4/140 (2%)

Query  37   MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG  96
            MT + K L+KS +  G V ASM+ ST V  A P+PNWDA+AQCESGGNW ANTGNG+YGG
Sbjct  1    MTNLCKLLVKSVVVGGFVAASMASSTGVVSAEPTPNWDAIAQCESGGNWHANTGNGEYGG  60

Query  97   LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQ  156
            LQFKPATWA +GGVGNPAAASREQQIAVANRV AE+G++ WP CGA SGLPI  +S PAQ
Sbjct  61   LQFKPATWARYGGVGNPAAASREQQIAVANRVFAEEGVEPWPKCGAQSGLPIGWYSHPAQ  120

Query  157  GIKQIINEIIWAGIQASIPR  176
            GIKQIIN +    IQA++PR
Sbjct  121  GIKQIINGL----IQAAVPR  136


>gi|15828097|ref|NP_302360.1| hypothetical protein ML2030 [Mycobacterium leprae TN]
 gi|221230574|ref|YP_002503990.1| hypothetical protein MLBr_02030 [Mycobacterium leprae Br4923]
 gi|13093651|emb|CAC30985.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933681|emb|CAR72127.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=157

 Score =  198 bits (503),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 99/141 (71%), Positives = 115/141 (82%), Gaps = 3/141 (2%)

Query  32   GDMSSMTRIAKPLIKSAMAAGLVTASMSLSTA--VAHAGP-SPNWDAVAQCESGGNWAAN  88
            G+M  + ++ K  +KSA+ +G+VTASM+LST+  +A+A P  PNWDAVAQCESG NW AN
Sbjct  5    GEMLDVRKLCKLFVKSAVVSGIVTASMALSTSTGMANAVPREPNWDAVAQCESGRNWRAN  64

Query  89   TGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPI  148
            TGNG YGGLQFKP  WA +GGVGNPA ASREQQI VANRVLA+QGLDAWP CGAAS LPI
Sbjct  65   TGNGFYGGLQFKPTIWARYGGVGNPAGASREQQITVANRVLADQGLDAWPKCGAASDLPI  124

Query  149  ALWSKPAQGIKQIINEIIWAG  169
             LWS PAQG+KQIIN+II  G
Sbjct  125  TLWSHPAQGVKQIINDIIQMG  145


>gi|342859533|ref|ZP_08716186.1| hypothetical protein MCOL_11658 [Mycobacterium colombiense CECT 
3035]
 gi|342132665|gb|EGT85885.1| hypothetical protein MCOL_11658 [Mycobacterium colombiense CECT 
3035]
Length=145

 Score =  195 bits (496),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 96/148 (65%), Positives = 114/148 (78%), Gaps = 4/148 (2%)

Query  29   ATSGDMSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAAN  88
            AT  ++  M  + K L+KS    G + ASM+ S  V  A P+PNWDA+AQCESGGNW AN
Sbjct  2    ATRAEILDMKYLCKLLVKSVAVGGFIAASMASSAGVVSAEPTPNWDAIAQCESGGNWHAN  61

Query  89   TGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPI  148
            TGNG+YGGLQFKP+TWA +GGVGNPAAASREQQIAVANRV AE+G++AWP CGA SGLPI
Sbjct  62   TGNGEYGGLQFKPSTWARYGGVGNPAAASREQQIAVANRVFAEEGVEAWPKCGANSGLPI  121

Query  149  ALWSKPAQGIKQIINEIIWAGIQASIPR  176
              +S PAQGIKQIIN +    IQA++P 
Sbjct  122  GWYSHPAQGIKQIINGL----IQAAVPH  145


>gi|118464653|ref|YP_882005.1| resuscitation-promoting factor RpfA [Mycobacterium avium 104]
 gi|254775297|ref|ZP_05216813.1| hypothetical protein MaviaA2_11586 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|118165940|gb|ABK66837.1| resuscitation-promoting factor RpfA [Mycobacterium avium 104]
Length=109

 Score =  172 bits (435),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 84/110 (77%), Positives = 95/110 (87%), Gaps = 4/110 (3%)

Query  67   AGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVAN  126
            A P+PNWDA+AQCESGGNW ANTGNG+YGGLQFKPATWA +GGVGNPAAASREQQIAVAN
Sbjct  4    AEPTPNWDAIAQCESGGNWHANTGNGEYGGLQFKPATWARYGGVGNPAAASREQQIAVAN  63

Query  127  RVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR  176
            RV AE+G++ WP CGA SGLPI  +S PAQGIKQIIN +    IQA++PR
Sbjct  64   RVFAEEGVEPWPKCGAQSGLPIGWYSHPAQGIKQIINGL----IQAAVPR  109


>gi|254819297|ref|ZP_05224298.1| hypothetical protein MintA_05188 [Mycobacterium intracellulare 
ATCC 13950]
Length=109

 Score =  166 bits (420),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 81/107 (76%), Positives = 91/107 (86%), Gaps = 4/107 (3%)

Query  70   SPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVL  129
            +PNWDA+AQCESGGNW ANTGNG YGGLQFKPATWA +GGVGNPAAASREQQIAVANRV 
Sbjct  7    APNWDAIAQCESGGNWHANTGNGNYGGLQFKPATWARYGGVGNPAAASREQQIAVANRVF  66

Query  130  AEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR  176
            AE+G++ WP CGA SGLPI  +S PAQGIKQIIN +    IQA++P 
Sbjct  67   AEEGVEPWPKCGAQSGLPIGWYSHPAQGIKQIINGL----IQAAVPH  109


>gi|118618374|ref|YP_906706.1| resuscitation-promoting factor-like protein [Mycobacterium ulcerans 
Agy99]
 gi|118570484|gb|ABL05235.1| resuscitation-promoting factor-like protein [Mycobacterium ulcerans 
Agy99]
Length=146

 Score =  160 bits (405),  Expect = 7e-38, Method: Compositional matrix adjust.
 Identities = 82/117 (71%), Positives = 92/117 (79%), Gaps = 1/117 (0%)

Query  29   ATSGDMSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAAN  88
            ATS + S MT IAKPL KSA+A G V ASMSLST VA A    NW+AVAQCESGGNW+ N
Sbjct  2    ATSAEKSDMTHIAKPLTKSALAGGFVVASMSLSTGVAQA-DLMNWEAVAQCESGGNWSVN  60

Query  89   TGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASG  145
            TGNG YGGLQFK ATW  +GGVGNPA+AS++QQIA+ANRVLA QG  AWP C +A G
Sbjct  61   TGNGAYGGLQFKQATWEEYGGVGNPASASKQQQIAIANRVLAGQGPAAWPKCSSAGG  117


>gi|183982778|ref|YP_001851069.1| resuscitation-promoting factor-like protein [Mycobacterium marinum 
M]
 gi|183176104|gb|ACC41214.1| resuscitation-promoting factor-like protein [Mycobacterium marinum 
M]
Length=137

 Score =  155 bits (392),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 79/109 (73%), Positives = 88/109 (81%), Gaps = 1/109 (0%)

Query  37   MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG  96
            MT IAKPL KSA+A G V ASMSLST VA A    NW+AVAQCESGGNW+ANTGNG YGG
Sbjct  1    MTHIAKPLTKSALAGGFVVASMSLSTGVAQA-DLMNWEAVAQCESGGNWSANTGNGAYGG  59

Query  97   LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASG  145
            LQFK ATW  +GGVGNPA+AS++QQIA+ANRVLA QG  AWP C +A G
Sbjct  60   LQFKQATWEEYGGVGNPASASKQQQIAIANRVLAGQGPAAWPKCSSAGG  108


>gi|240170530|ref|ZP_04749189.1| resuscitation-promoting factor-like protein [Mycobacterium kansasii 
ATCC 12478]
Length=141

 Score =  153 bits (387),  Expect = 8e-36, Method: Compositional matrix adjust.
 Identities = 90/135 (67%), Positives = 100/135 (75%), Gaps = 3/135 (2%)

Query  34   MSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGK  93
            M  MTRIAKPLIKSA AA  V ASMSLST +AHA    NWDAVAQCESGGNW ANTGNG 
Sbjct  1    MPDMTRIAKPLIKSATAAAFVAASMSLSTGIAHA-DVMNWDAVAQCESGGNWTANTGNGA  59

Query  94   YGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASG--LPIALW  151
            YGGLQFK ATW  +GGVGNPA AS++QQIAVANRVLA QG  AWP C +A G      + 
Sbjct  60   YGGLQFKQATWDEYGGVGNPATASKQQQIAVANRVLAGQGPAAWPKCASAGGLPPVPVVL  119

Query  152  SKPAQGIKQIINEII  166
             KP + ++Q + EII
Sbjct  120  PKPVRQLQQTVTEII  134


>gi|118469017|ref|YP_888904.1| hypothetical protein MSMEG_4640 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118170304|gb|ABK71200.1| secreted protein [Mycobacterium smegmatis str. MC2 155]
Length=153

 Score =  127 bits (318),  Expect = 7e-28, Method: Compositional matrix adjust.
 Identities = 69/105 (66%), Positives = 77/105 (74%), Gaps = 2/105 (1%)

Query  47   SAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAA  106
            +A+A  L    M LS A A A  S NWDA+A CESGGNW+ NTGNG YGGLQFK +TWAA
Sbjct  8    TALAGALAMGPMVLSPATA-AADSVNWDAIAACESGGNWSTNTGNGHYGGLQFKQSTWAA  66

Query  107  FGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALW  151
             GGVG+PA ASREQQIAVA  VL  QGL AWP CGA  G+P A+W
Sbjct  67   HGGVGSPATASREQQIAVAENVLRTQGLAAWPKCGARGGVP-AVW  110


>gi|120404915|ref|YP_954744.1| transglycosylase domain-containing protein [Mycobacterium vanbaalenii 
PYR-1]
 gi|119957733|gb|ABM14738.1| Transglycosylase domain protein [Mycobacterium vanbaalenii PYR-1]
Length=170

 Score =  126 bits (316),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 69/124 (56%), Positives = 85/124 (69%), Gaps = 4/124 (3%)

Query  34   MSSMTRIAKPLIKSAMAAGLVTASMSL--STAVAHAGPSPNWDAVAQCESGGNWAANTGN  91
            M+    ++K L+ +A++  L    M++  +TA AHA  S NWDA+AQCESGGNWA NTGN
Sbjct  1    MNVRKVVSKGLMAAAISGALAVVPMAMDGTTATAHA-DSVNWDAIAQCESGGNWAINTGN  59

Query  92   GKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALW  151
            G +GGLQFK ATW+A GGVGNPAAA R +QI VA  VL  QGL AWP CG A G+   +W
Sbjct  60   GHFGGLQFKQATWSANGGVGNPAAAPRHEQIRVAENVLRTQGLKAWPKCG-AKGMAAQVW  118

Query  152  SKPA  155
               A
Sbjct  119  GNTA  122


>gi|145223207|ref|YP_001133885.1| transglycosylase domain-containing protein [Mycobacterium gilvum 
PYR-GCK]
 gi|315443665|ref|YP_004076544.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
 gi|145215693|gb|ABP45097.1| Transglycosylase domain protein [Mycobacterium gilvum PYR-GCK]
 gi|315261968|gb|ADT98709.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
Length=170

 Score =  124 bits (311),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 68/116 (59%), Positives = 80/116 (69%), Gaps = 4/116 (3%)

Query  42   KPLIKSAMAAGLVTASMSLS--TAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF  99
            K L+ +A++  L    M+L   TA AHA  S NWDA+AQCESGGNWA NTGNG +GGLQF
Sbjct  9    KGLMAAAISGALAVVPMALDGGTATAHA-DSVNWDAIAQCESGGNWAINTGNGHFGGLQF  67

Query  100  KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPA  155
            K ATW+A GGVGNPA A R +QI VA  VL  QG+ AWP CG A G+   +W  PA
Sbjct  68   KQATWSANGGVGNPARAPRHEQIRVAENVLRTQGIKAWPKCG-AKGMAAQVWGNPA  122


>gi|333990993|ref|YP_004523607.1| resuscitation-promoting [Mycobacterium sp. JDM601]
 gi|333486961|gb|AEF36353.1| resuscitation-promoting [Mycobacterium sp. JDM601]
Length=114

 Score =  123 bits (308),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 62/95 (66%), Positives = 72/95 (76%), Gaps = 4/95 (4%)

Query  73   WDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQ  132
            WDAVAQCESGGNWAA+TGNG YGGLQFKP+TW AFGGVG P+ ASRE+QIAVANRVL EQ
Sbjct  21   WDAVAQCESGGNWAADTGNGFYGGLQFKPSTWRAFGGVGLPSKASREEQIAVANRVLDEQ  80

Query  133  GLDAWPTCGAASGLPIAL--WSKPAQGIKQIINEI  165
            G  AWP CG     P ++  W  PA  ++Q++   
Sbjct  81   GPYAWPKCGPGKVFPSSVKGWVPPA--MRQLLKPF  113


>gi|169631158|ref|YP_001704807.1| hypothetical protein MAB_4080c [Mycobacterium abscessus ATCC 
19977]
 gi|169243125|emb|CAM64153.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=146

 Score =  122 bits (306),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 62/88 (71%), Positives = 70/88 (80%), Gaps = 1/88 (1%)

Query  53   LVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGN  112
            L   S+S++ +VA A  S NWDAVA+CESGGNW+ANTGNG YGGLQFKP+TWAA GGVGN
Sbjct  20   LFMMSLSMTASVASA-DSMNWDAVAECESGGNWSANTGNGFYGGLQFKPSTWAAHGGVGN  78

Query  113  PAAASREQQIAVANRVLAEQGLDAWPTC  140
            PA ASRE+QIAVA  VL  QG  AWP C
Sbjct  79   PAEASREEQIAVAEDVLRTQGPGAWPKC  106


>gi|108800529|ref|YP_640726.1| transglycosylase-like protein [Mycobacterium sp. MCS]
 gi|119869668|ref|YP_939620.1| transglycosylase domain-containing protein [Mycobacterium sp. 
KMS]
 gi|126436145|ref|YP_001071836.1| transglycosylase domain-containing protein [Mycobacterium sp. 
JLS]
 gi|108770948|gb|ABG09670.1| Transglycosylase-like protein [Mycobacterium sp. MCS]
 gi|119695757|gb|ABL92830.1| Transglycosylase domain protein [Mycobacterium sp. KMS]
 gi|126235945|gb|ABN99345.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=171

 Score =  120 bits (300),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 65/123 (53%), Positives = 77/123 (63%), Gaps = 6/123 (4%)

Query  37   MTRIAKPLIK----SAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNG  92
            M  I K L +    + + A         S+A A A  S NWDA+AQCESGGNW+ NTGNG
Sbjct  1    MINIGKALTRGIWLTVIGAAFALVPTFFSSATASA-DSVNWDAIAQCESGGNWSTNTGNG  59

Query  93   KYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG-AASGLPIALW  151
             +GGLQFKP TW++ GG GNPA ASR +QI VA RVLA QGL AWP CG        A+W
Sbjct  60   YFGGLQFKPTTWSSHGGRGNPANASRSEQIQVAERVLATQGLKAWPKCGPRGVATRAAVW  119

Query  152  SKP  154
            + P
Sbjct  120  NNP  122


>gi|333990096|ref|YP_004522710.1| resuscitation-promoting factor-like protein [Mycobacterium sp. 
JDM601]
 gi|333486064|gb|AEF35456.1| resuscitation-promoting factor-like protein [Mycobacterium sp. 
JDM601]
Length=108

 Score =  116 bits (291),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 59/105 (57%), Positives = 71/105 (68%), Gaps = 1/105 (0%)

Query  37   MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG  96
            +  + KPL  +A+A  L+T +++LS A A A  S NWDA+A CESGGNW+ NTGNG YGG
Sbjct  2    LKNVRKPLTLAAIAGALITGAVALSDATARA-DSVNWDAIAACESGGNWSINTGNGYYGG  60

Query  97   LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG  141
            LQF   TW A GG G P  ASR +QI VA  VL  QG+ AWP CG
Sbjct  61   LQFNAGTWRANGGSGMPHNASRSEQIRVAENVLRSQGIGAWPVCG  105


>gi|108799874|ref|YP_640071.1| transglycosylase-like protein [Mycobacterium sp. MCS]
 gi|108770293|gb|ABG09015.1| Transglycosylase-like protein [Mycobacterium sp. MCS]
Length=181

 Score =  116 bits (291),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 63/119 (53%), Positives = 79/119 (67%), Gaps = 5/119 (4%)

Query  28   SATSGDMSSM----TRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGG  83
            + TSG +  +     ++ K L  +  A  L T S++++T  A+A  + NWDA+AQCES G
Sbjct  14   TTTSGRVRRLKGFPVQMVKGLGVALTAVALSTTSIAVATPKANAS-TVNWDAIAQCESSG  72

Query  84   NWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGA  142
            NWA NTGNG YGGLQF PATW   GGVG+P  A RE QIA+A RVL  QG+ AWP CGA
Sbjct  73   NWAINTGNGFYGGLQFLPATWREHGGVGSPDKAPREYQIAIAERVLRTQGIGAWPVCGA  131


>gi|331699477|ref|YP_004335716.1| transglycosylase-like domain-containing protein [Pseudonocardia 
dioxanivorans CB1190]
 gi|326954166|gb|AEA27863.1| Transglycosylase-like domain protein [Pseudonocardia dioxanivorans 
CB1190]
Length=202

 Score =  115 bits (289),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 60/111 (55%), Positives = 74/111 (67%), Gaps = 1/111 (0%)

Query  37   MTRIAKPLIKSAMAAGLVTASMSLSTA-VAHAGPSPNWDAVAQCESGGNWAANTGNGKYG  95
            MT ++K  +   + AG++     ++ A  A+A P+  WD +AQCESGGNWA NTGNG YG
Sbjct  1    MTLVSKRSLARLLVAGVIAVGAPVAVAGTANAAPADAWDRLAQCESGGNWAINTGNGFYG  60

Query  96   GLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGL  146
            GLQF  +TW A+GG G+P  ASR QQIAVA RVLA QG  AWP C    GL
Sbjct  61   GLQFTLSTWKAYGGTGSPQNASRAQQIAVAERVLAGQGWGAWPACSRKLGL  111


>gi|256379283|ref|YP_003102943.1| transglycosylase domain-containing protein [Actinosynnema mirum 
DSM 43827]
 gi|255923586|gb|ACU39097.1| Transglycosylase domain protein [Actinosynnema mirum DSM 43827]
Length=205

 Score =  115 bits (289),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 56/104 (54%), Positives = 72/104 (70%), Gaps = 1/104 (0%)

Query  38   TRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGL  97
            +R+   L+  A+  GL++ +++L TA   +    +WDA+A+CESGGNW+ NTGNG YGGL
Sbjct  10   SRVLTRLVACAVM-GLISGALALGTATTASAQGADWDAIARCESGGNWSINTGNGYYGGL  68

Query  98   QFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG  141
            QF P TWAA GG G P  ASRE+QI VA  VL  QG+ AWP CG
Sbjct  69   QFNPGTWAANGGSGMPHQASREEQIRVAENVLRSQGIGAWPHCG  112


>gi|220911770|ref|YP_002487079.1| transglycosylase [Arthrobacter chlorophenolicus A6]
 gi|219858648|gb|ACL38990.1| Transglycosylase domain protein [Arthrobacter chlorophenolicus 
A6]
Length=212

 Score =  115 bits (288),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 61/109 (56%), Positives = 76/109 (70%), Gaps = 4/109 (3%)

Query  33   DMSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAG-PSPNWDAVAQCESGGNWAANTGN  91
            + SS   +A+   + A  A L  A ++LST  A+A  P+  WD++AQCESGGNW+ NTGN
Sbjct  2    NKSSFRTVAR---RGATVAALSVAGVALSTGAANAATPTSTWDSLAQCESGGNWSTNTGN  58

Query  92   GKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTC  140
            G  GGLQF  +TW A+GG G+PA ASREQQIAVA RV A QG  AWP+C
Sbjct  59   GFSGGLQFTASTWQAYGGSGSPADASREQQIAVAERVQASQGWGAWPSC  107


>gi|119868984|ref|YP_938936.1| transglycosylase domain-containing protein [Mycobacterium sp. 
KMS]
 gi|126435517|ref|YP_001071208.1| transglycosylase domain-containing protein [Mycobacterium sp. 
JLS]
 gi|119695073|gb|ABL92146.1| Transglycosylase domain protein [Mycobacterium sp. KMS]
 gi|126235317|gb|ABN98717.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=152

 Score =  115 bits (288),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 60/103 (59%), Positives = 72/103 (70%), Gaps = 1/103 (0%)

Query  40   IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF  99
            + K L  +  A  L T S++++T  A+A  + NWDA+AQCES GNWA NTGNG YGGLQF
Sbjct  1    MVKGLGVALTAVALSTTSIAVATPKANAS-TVNWDAIAQCESSGNWAINTGNGFYGGLQF  59

Query  100  KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGA  142
             PATW   GGVG+P  A RE QIA+A RVL  QG+ AWP CGA
Sbjct  60   LPATWREHGGVGSPDKAPREYQIAIAERVLRTQGIGAWPVCGA  102


>gi|296140721|ref|YP_003647964.1| transglycosylase domain-containing protein [Tsukamurella paurometabola 
DSM 20162]
 gi|296028855|gb|ADG79625.1| Transglycosylase domain protein [Tsukamurella paurometabola DSM 
20162]
Length=107

 Score =  114 bits (286),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 60/105 (58%), Positives = 72/105 (69%), Gaps = 1/105 (0%)

Query  37   MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG  96
            M  I K L   A++  +V A ++  T  A+AG S NWDA+A CESGGNW+ NTGNG YGG
Sbjct  1    MKNIRKTLGMMAISGAIVAAPVAFGTGAANAG-SVNWDAIAACESGGNWSTNTGNGYYGG  59

Query  97   LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG  141
            LQF P+TW A GG G P  ASR +QI VA  VLA QG+ AWP+CG
Sbjct  60   LQFSPSTWRANGGSGLPHNASRAEQIRVAENVLASQGIGAWPSCG  104


>gi|326383331|ref|ZP_08205019.1| transglycosylase domain-containing protein [Gordonia neofelifaecis 
NRRL B-59395]
 gi|326198081|gb|EGD55267.1| transglycosylase domain-containing protein [Gordonia neofelifaecis 
NRRL B-59395]
Length=107

 Score =  114 bits (284),  Expect = 8e-24, Method: Compositional matrix adjust.
 Identities = 60/107 (57%), Positives = 74/107 (70%), Gaps = 3/107 (2%)

Query  36   SMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYG  95
            S+T++A    ++A+A  L  A ++L+  VA A    NWDAVAQCESGG+W+ NTGNG YG
Sbjct  2    SLTKLAT---RAAIAGALTIAPLTLAAGVASADTGHNWDAVAQCESGGDWSINTGNGYYG  58

Query  96   GLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGA  142
            GLQF  +TW A GG G+   ASRE+QI VA  VLA QG  AWP CGA
Sbjct  59   GLQFSQSTWEANGGSGSANNASREEQIRVAENVLATQGPGAWPVCGA  105


>gi|108800530|ref|YP_640727.1| transglycosylase-like protein [Mycobacterium sp. MCS]
 gi|119869669|ref|YP_939621.1| transglycosylase domain-containing protein [Mycobacterium sp. 
KMS]
 gi|126436146|ref|YP_001071837.1| transglycosylase domain-containing protein [Mycobacterium sp. 
JLS]
 gi|108770949|gb|ABG09671.1| Transglycosylase-like protein [Mycobacterium sp. MCS]
 gi|119695758|gb|ABL92831.1| Transglycosylase domain protein [Mycobacterium sp. KMS]
 gi|126235946|gb|ABN99346.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=118

 Score =  113 bits (283),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 58/105 (56%), Positives = 67/105 (64%), Gaps = 0/105 (0%)

Query  37   MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG  96
            +  I K L  +  A  L  A M+L    A+A    NWDAVA CESGGNW+ NTGNG YGG
Sbjct  11   LKNIRKTLGLATFAGALAVAPMALGAGTANADSGVNWDAVAACESGGNWSINTGNGYYGG  70

Query  97   LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG  141
            LQF   TW + GG G+P  ASRE+QI VA  VL  QG+ AWPTCG
Sbjct  71   LQFTMGTWQSNGGSGSPHNASREEQIRVAENVLQSQGIGAWPTCG  115


>gi|302530572|ref|ZP_07282914.1| predicted protein [Streptomyces sp. AA4]
 gi|302439467|gb|EFL11283.1| predicted protein [Streptomyces sp. AA4]
Length=208

 Score =  113 bits (282),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 58/114 (51%), Positives = 73/114 (65%), Gaps = 3/114 (2%)

Query  32   GDMSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGN  91
            G    M+   + + + A+A   V A ++++   A A    NWDA+AQCESGGNW  NTGN
Sbjct  5    GKHRKMSAATRTIARVAVAGIAVGAPLAIAATPASA---TNWDAIAQCESGGNWNTNTGN  61

Query  92   GKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASG  145
            G YGGLQF  +TW A+GG G+P  ASREQQIAVA RV+  QG  AWP C   +G
Sbjct  62   GYYGGLQFTQSTWKAYGGTGSPQGASREQQIAVAERVMQGQGPGAWPVCSKKAG  115


>gi|257067476|ref|YP_003153731.1| transglycosylase-like protein [Brachybacterium faecium DSM 4810]
 gi|256558294|gb|ACU84141.1| transglycosylase-like protein [Brachybacterium faecium DSM 4810]
Length=350

 Score =  113 bits (282),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 60/114 (53%), Positives = 75/114 (66%), Gaps = 4/114 (3%)

Query  39   RIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQ  98
            R+A P + +A    ++ A + +S A   A  +  WD VAQCESGGNW+ NTGNG YGGLQ
Sbjct  23   RVA-PKMAAATGGAVIAAGLGVSGAGVAAADTAVWDKVAQCESGGNWSINTGNGYYGGLQ  81

Query  99   FKPATWAAFGG---VGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIA  149
            F P+TW AFGG    GN   A++ +QIAVA R LA+QG  AWPTCG  +GL  A
Sbjct  82   FSPSTWRAFGGQEFAGNAHQATKAEQIAVAQRTLAQQGPGAWPTCGKRAGLTKA  135


>gi|120404916|ref|YP_954745.1| transglycosylase domain-containing protein [Mycobacterium vanbaalenii 
PYR-1]
 gi|119957734|gb|ABM14739.1| Transglycosylase domain protein [Mycobacterium vanbaalenii PYR-1]
Length=111

 Score =  112 bits (279),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 60/109 (56%), Positives = 70/109 (65%), Gaps = 3/109 (2%)

Query  37   MTRIAKPLIKSAMAAGLVTASMSLSTAVAHA---GPSPNWDAVAQCESGGNWAANTGNGK  93
            M  I K    + +A  L  A M++ T VA       S NWDAVA CESGGNW+ NTGNG 
Sbjct  1    MKNIRKTFGLATIAGALAVAPMAVVTGVAAGTANADSVNWDAVAACESGGNWSINTGNGY  60

Query  94   YGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGA  142
            YGGLQF   TW + GG G+P  ASRE+QI VAN VL  QG+ AWP+CGA
Sbjct  61   YGGLQFTMGTWQSNGGSGSPHHASREEQIRVANNVLQTQGIGAWPSCGA  109


>gi|257057377|ref|YP_003135209.1| transglycosylase family protein [Saccharomonospora viridis DSM 
43017]
 gi|256587249|gb|ACU98382.1| transglycosylase family protein [Saccharomonospora viridis DSM 
43017]
Length=205

 Score =  111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 50/72 (70%), Positives = 58/72 (81%), Gaps = 0/72 (0%)

Query  70   SPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVL  129
            S NWDA+A+CESGG+W+ NTGNG YGGLQFK +TW A+GG G P  ASRE+QIAVA RVL
Sbjct  16   SVNWDAIAECESGGDWSINTGNGYYGGLQFKLSTWQAYGGTGMPHEASREEQIAVAERVL  75

Query  130  AEQGLDAWPTCG  141
              QG+ AWP CG
Sbjct  76   QGQGIGAWPVCG  87


>gi|116669469|ref|YP_830402.1| transglycosylase domain-containing protein [Arthrobacter sp. 
FB24]
 gi|116609578|gb|ABK02302.1| Transglycosylase domain protein [Arthrobacter sp. FB24]
Length=231

 Score =  111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 63/127 (50%), Positives = 80/127 (63%), Gaps = 14/127 (11%)

Query  34   MSSMTRIAKPLIKSAM--------------AAGLVTASMSLSTAVAHAGPSPNWDAVAQC  79
            M++ TR+  P+ KS +              AAGL  ++ + + AV  A  +  WDA+AQC
Sbjct  1    MNTSTRMNTPMGKSKLGTAARRGVTLAAVSAAGLALSATAANAAVPTATSTSTWDALAQC  60

Query  80   ESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPT  139
            ESGGNW+ NTGNG  GGLQF  +TWAA+GG G+ A+A+REQQIAVA  V A QG  AWP 
Sbjct  61   ESGGNWSTNTGNGFSGGLQFTDSTWAAYGGTGSAASATREQQIAVAENVQASQGWGAWPA  120

Query  140  CGAASGL  146
            C A  GL
Sbjct  121  CAAKLGL  127


>gi|15609526|ref|NP_216905.1| resuscitation-promoting factor RpfD [Mycobacterium tuberculosis 
H37Rv]
 gi|15841902|ref|NP_336939.1| hypothetical protein MT2458 [Mycobacterium tuberculosis CDC1551]
 gi|31793566|ref|NP_856059.1| resuscitation-promoting factor RpfD [Mycobacterium bovis AF2122/97]
 49 more sequence titles
 Length=154

 Score =  110 bits (274),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 55/105 (53%), Positives = 72/105 (69%), Gaps = 1/105 (0%)

Query  40   IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF  99
            +    I++A+ A +  A + LST ++      +WDA+AQCESGGNWAANTGNG YGGLQ 
Sbjct  22   VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI  80

Query  100  KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS  144
              ATW + GGVG+PAAAS +QQI VA+ ++  QG  AWP C + S
Sbjct  81   SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS  125


>gi|126437075|ref|YP_001072766.1| transglycosylase domain-containing protein [Mycobacterium sp. 
JLS]
 gi|126236875|gb|ABO00276.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=153

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 58/120 (49%), Positives = 78/120 (65%), Gaps = 2/120 (1%)

Query  37   MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG  96
            M  I + L   A++A L+  + +     A+A  + +WDA+AQCESGG+W+ +TGNG +GG
Sbjct  1    MRAIWRILTSIAVSAALIVTATAAGPTSAYAN-AIDWDAIAQCESGGDWSISTGNGYFGG  59

Query  97   LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQ  156
            LQFKP+TWA  GG GNPA A+R +QI +A RV   QGL AWP CG   G+    W  PA+
Sbjct  60   LQFKPSTWAEHGGRGNPADAARTEQIRIAERVTRTQGLGAWPVCG-RKGVEHVGWYVPAR  118


>gi|343924791|ref|ZP_08764330.1| putative resuscitation-promoting factor [Gordonia alkanivorans 
NBRC 16433]
 gi|343765298|dbj|GAA11256.1| putative resuscitation-promoting factor [Gordonia alkanivorans 
NBRC 16433]
Length=84

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 54/73 (74%), Positives = 58/73 (80%), Gaps = 0/73 (0%)

Query  70   SPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVL  129
            S NWDAVAQCESGG+W+ NTGNG YGGLQF  +TW A GG GNPA ASRE+QI VA  VL
Sbjct  10   SGNWDAVAQCESGGDWSINTGNGYYGGLQFSQSTWEANGGSGNPANASREEQIRVAENVL  69

Query  130  AEQGLDAWPTCGA  142
            A QG  AWPTCGA
Sbjct  70   ATQGPGAWPTCGA  82


>gi|325962335|ref|YP_004240241.1| transglycosylase family protein [Arthrobacter phenanthrenivorans 
Sphe3]
 gi|323468422|gb|ADX72107.1| transglycosylase family protein [Arthrobacter phenanthrenivorans 
Sphe3]
Length=220

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 53/74 (72%), Positives = 59/74 (80%), Gaps = 0/74 (0%)

Query  73   WDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQ  132
            WDA+AQCESGGNWA NTGNG  GGLQF P+TWAA+GG G+ A ASREQQIAVA +V A Q
Sbjct  48   WDALAQCESGGNWAINTGNGYSGGLQFSPSTWAAYGGTGSAADASREQQIAVAEQVQAAQ  107

Query  133  GLDAWPTCGAASGL  146
            G  AWP+C A  GL
Sbjct  108  GWGAWPSCSAQLGL  121


>gi|167968732|ref|ZP_02551009.1| resuscitation-promoting factor rpfD [Mycobacterium tuberculosis 
H37Ra]
 gi|254551437|ref|ZP_05141884.1| resuscitation-promoting factor rpfD [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|308232117|ref|ZP_07664005.1| resuscitation-promoting factor rpfD [Mycobacterium tuberculosis 
SUMu001]
 26 more sequence titles
 Length=130

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 55/101 (55%), Positives = 71/101 (71%), Gaps = 1/101 (0%)

Query  44   LIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPAT  103
             I++A+ A +  A + LST ++      +WDA+AQCESGGNWAANTGNG YGGLQ   AT
Sbjct  2    FIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQAT  60

Query  104  WAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS  144
            W + GGVG+PAAAS +QQI VA+ ++  QG  AWP C + S
Sbjct  61   WDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS  101


>gi|169628687|ref|YP_001702336.1| hypothetical protein MAB_1597 [Mycobacterium abscessus ATCC 19977]
 gi|169240654|emb|CAM61682.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=110

 Score =  108 bits (269),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 59/94 (63%), Positives = 65/94 (70%), Gaps = 2/94 (2%)

Query  48   AMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAF  107
            AMA  LV A M+L+   A A P  NWDA+A CESGGNW  NTGNG YGGLQF   TW A 
Sbjct  16   AMAPALVAAPMALA-GTASADPV-NWDAIAACESGGNWGINTGNGYYGGLQFNLGTWRAN  73

Query  108  GGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG  141
            GG G+P  ASRE+QI VA  VLA QG+ AWP CG
Sbjct  74   GGSGSPHLASREEQIRVAENVLARQGIGAWPVCG  107


>gi|262203254|ref|YP_003274462.1| transglycosylase [Gordonia bronchialis DSM 43247]
 gi|262086601|gb|ACY22569.1| Transglycosylase domain protein [Gordonia bronchialis DSM 43247]
Length=106

 Score =  107 bits (268),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 59/106 (56%), Positives = 70/106 (67%), Gaps = 4/106 (3%)

Query  36   SMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYG  95
            SMT++   + ++A+   L  A   L    A A  + NWDAVAQCESGGNWA NTGNG YG
Sbjct  2    SMTKL---VARAAVVGALTAAPFGLLATTASA-DTHNWDAVAQCESGGNWAINTGNGYYG  57

Query  96   GLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG  141
            GLQF  +TW A GG G+ + ASRE+QI VA  VLA QG  AWP CG
Sbjct  58   GLQFTQSTWEANGGSGSASNASREEQIRVAENVLATQGPGAWPVCG  103


>gi|229490962|ref|ZP_04384795.1| secreted protein [Rhodococcus erythropolis SK121]
 gi|229322078|gb|EEN87866.1| secreted protein [Rhodococcus erythropolis SK121]
Length=184

 Score =  107 bits (267),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 57/107 (54%), Positives = 70/107 (66%), Gaps = 2/107 (1%)

Query  36   SMTRIAKPLIKS-AMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKY  94
            + T I+K    + A+A  LV   +++ST  A A  + NWD VAQCESGG+W  NTGNG Y
Sbjct  2    TYTSISKRAFGTLAVAGALVAVPLTMSTGTASAA-THNWDGVAQCESGGDWNINTGNGYY  60

Query  95   GGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG  141
            GGLQF  +TW A GG G+PA AS+E+QI VA   L  QG  AWP CG
Sbjct  61   GGLQFSQSTWTANGGTGSPANASKEEQIRVAENTLQSQGPGAWPVCG  107


>gi|300790325|ref|YP_003770616.1| hypothetical protein AMED_8518 [Amycolatopsis mediterranei U32]
 gi|299799839|gb|ADJ50214.1| secreted protein [Amycolatopsis mediterranei U32]
 gi|340532006|gb|AEK47211.1| hypothetical protein RAM_43720 [Amycolatopsis mediterranei S699]
Length=215

 Score =  107 bits (267),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 55/109 (51%), Positives = 71/109 (66%), Gaps = 3/109 (2%)

Query  32   GDMSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGN  91
            G    M+   + + + A+A   V A ++++   A A    NWDA+AQCES GNW  NTGN
Sbjct  5    GKHRKMSAATRTVARVAIAGIAVGAPLAIAATPASA---TNWDAIAQCESSGNWNTNTGN  61

Query  92   GKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTC  140
            G YGGLQF  +TW A+GG G+ A ASR++QIAVA RVL  QG+ AWP C
Sbjct  62   GYYGGLQFTQSTWKAYGGSGSAANASRDEQIAVAERVLQGQGIGAWPVC  110


>gi|226305719|ref|YP_002765679.1| resuscitation-promoting factor [Rhodococcus erythropolis PR4]
 gi|226184836|dbj|BAH32940.1| putative resuscitation-promoting factor [Rhodococcus erythropolis 
PR4]
Length=184

 Score =  107 bits (267),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 57/107 (54%), Positives = 70/107 (66%), Gaps = 2/107 (1%)

Query  36   SMTRIAKPLIKS-AMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKY  94
            + T I+K    + A+A  LV   +++ST  A A  + NWD VAQCESGG+W  NTGNG Y
Sbjct  2    TYTSISKRAFGTLAVAGALVAVPLTMSTGTASAA-THNWDGVAQCESGGDWNINTGNGYY  60

Query  95   GGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG  141
            GGLQF  +TW A GG G+PA AS+E+QI VA   L  QG  AWP CG
Sbjct  61   GGLQFSQSTWTANGGTGSPANASKEEQIRVAENTLQSQGPGAWPVCG  107


>gi|325003415|ref|ZP_08124527.1| resuscitation-promoting factor [Pseudonocardia sp. P1]
Length=848

 Score =  107 bits (267),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 51/81 (63%), Positives = 60/81 (75%), Gaps = 1/81 (1%)

Query  61   STAVAHAGPSP-NWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASRE  119
            +TA A  G  P  WD +A+CESGG+WA +TGNG  GGLQF P+TW AFGG G+P  ASRE
Sbjct  761  ATATAGGGTDPATWDKLAECESGGDWATDTGNGYSGGLQFAPSTWEAFGGQGDPHQASRE  820

Query  120  QQIAVANRVLAEQGLDAWPTC  140
            +QIAVA +V AEQG  AWP C
Sbjct  821  EQIAVAEKVQAEQGWGAWPAC  841


>gi|315441569|ref|YP_004074446.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
 gi|315265224|gb|ADU01965.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
Length=153

 Score =  107 bits (267),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 52/105 (50%), Positives = 72/105 (69%), Gaps = 1/105 (0%)

Query  37   MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG  96
            M  + + L   A++  L   + ++    A+A  + +WDA+AQCESGG+W+ +TGNG +GG
Sbjct  1    MRAVCRFLTAIAVSGALAVTAHAVDPISAYAN-AIDWDAIAQCESGGDWSISTGNGYFGG  59

Query  97   LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG  141
            LQF+P+TWA  GG GNPA A+R +QI VA RV+  QGL AWP CG
Sbjct  60   LQFQPSTWAEHGGRGNPANAARTEQIRVAERVIGTQGLGAWPVCG  104


>gi|163841267|ref|YP_001625672.1| transglycosylase family protein [Renibacterium salmoninarum ATCC 
33209]
 gi|162954743|gb|ABY24258.1| transglycosylase family protein [Renibacterium salmoninarum ATCC 
33209]
Length=220

 Score =  107 bits (266),  Expect = 9e-22, Method: Compositional matrix adjust.
 Identities = 53/83 (64%), Positives = 57/83 (69%), Gaps = 0/83 (0%)

Query  64   VAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIA  123
             A A     WDA+AQCESGGNW  NTGNG  GGLQF P+TW A GG G+P  ASREQQIA
Sbjct  32   TAQAADGGTWDALAQCESGGNWGINTGNGFSGGLQFTPSTWVANGGTGSPQGASREQQIA  91

Query  124  VANRVLAEQGLDAWPTCGAASGL  146
            VA RV+  QG  AWP C A  GL
Sbjct  92   VAERVVQTQGWGAWPACSAKLGL  114



Lambda     K      H
   0.315    0.128    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 149040830208


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40