BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1884c
Length=176
Score E
Sequences producing significant alignments: (Bits) Value
gi|15841354|ref|NP_336391.1| hypothetical protein MT1932 [Mycoba... 350 3e-95
gi|15609021|ref|NP_216400.1| resuscitation-promoting factor RpfC... 350 4e-95
gi|340626892|ref|YP_004745344.1| putative resuscitation-promotin... 349 1e-94
gi|289554342|ref|ZP_06443552.1| resuscitation-promoting factor r... 348 1e-94
gi|253799072|ref|YP_003032073.1| resuscitation-promoting factor ... 347 3e-94
gi|323719626|gb|EGB28749.1| resuscitation-promoting factor rpfC ... 283 8e-75
gi|308231968|ref|ZP_07414442.2| resuscitation-promoting factor r... 278 3e-73
gi|41407705|ref|NP_960541.1| hypothetical protein MAP1607c [Myco... 212 1e-53
gi|296164903|ref|ZP_06847459.1| transglycosylase domain protein ... 203 9e-51
gi|336457545|gb|EGO36551.1| transglycosylase-like protein [Mycob... 199 2e-49
gi|15828097|ref|NP_302360.1| hypothetical protein ML2030 [Mycoba... 198 3e-49
gi|342859533|ref|ZP_08716186.1| hypothetical protein MCOL_11658 ... 195 2e-48
gi|118464653|ref|YP_882005.1| resuscitation-promoting factor Rpf... 172 2e-41
gi|254819297|ref|ZP_05224298.1| hypothetical protein MintA_05188... 166 1e-39
gi|118618374|ref|YP_906706.1| resuscitation-promoting factor-lik... 160 7e-38
gi|183982778|ref|YP_001851069.1| resuscitation-promoting factor-... 155 2e-36
gi|240170530|ref|ZP_04749189.1| resuscitation-promoting factor-l... 153 8e-36
gi|118469017|ref|YP_888904.1| hypothetical protein MSMEG_4640 [M... 127 7e-28
gi|120404915|ref|YP_954744.1| transglycosylase domain-containing... 126 2e-27
gi|145223207|ref|YP_001133885.1| transglycosylase domain-contain... 124 5e-27
gi|333990993|ref|YP_004523607.1| resuscitation-promoting [Mycoba... 123 1e-26
gi|169631158|ref|YP_001704807.1| hypothetical protein MAB_4080c ... 122 2e-26
gi|108800529|ref|YP_640726.1| transglycosylase-like protein [Myc... 120 9e-26
gi|333990096|ref|YP_004522710.1| resuscitation-promoting factor-... 116 1e-24
gi|108799874|ref|YP_640071.1| transglycosylase-like protein [Myc... 116 1e-24
gi|331699477|ref|YP_004335716.1| transglycosylase-like domain-co... 115 2e-24
gi|256379283|ref|YP_003102943.1| transglycosylase domain-contain... 115 2e-24
gi|220911770|ref|YP_002487079.1| transglycosylase [Arthrobacter ... 115 2e-24
gi|119868984|ref|YP_938936.1| transglycosylase domain-containing... 115 3e-24
gi|296140721|ref|YP_003647964.1| transglycosylase domain-contain... 114 4e-24
gi|326383331|ref|ZP_08205019.1| transglycosylase domain-containi... 114 8e-24
gi|108800530|ref|YP_640727.1| transglycosylase-like protein [Myc... 113 1e-23
gi|302530572|ref|ZP_07282914.1| predicted protein [Streptomyces ... 113 1e-23
gi|257067476|ref|YP_003153731.1| transglycosylase-like protein [... 113 1e-23
gi|120404916|ref|YP_954745.1| transglycosylase domain-containing... 112 3e-23
gi|257057377|ref|YP_003135209.1| transglycosylase family protein... 111 3e-23
gi|116669469|ref|YP_830402.1| transglycosylase domain-containing... 111 3e-23
gi|15609526|ref|NP_216905.1| resuscitation-promoting factor RpfD... 110 1e-22
gi|126437075|ref|YP_001072766.1| transglycosylase domain-contain... 109 1e-22
gi|343924791|ref|ZP_08764330.1| putative resuscitation-promoting... 109 1e-22
gi|325962335|ref|YP_004240241.1| transglycosylase family protein... 109 1e-22
gi|167968732|ref|ZP_02551009.1| resuscitation-promoting factor r... 109 1e-22
gi|169628687|ref|YP_001702336.1| hypothetical protein MAB_1597 [... 108 4e-22
gi|262203254|ref|YP_003274462.1| transglycosylase [Gordonia bron... 107 6e-22
gi|229490962|ref|ZP_04384795.1| secreted protein [Rhodococcus er... 107 6e-22
gi|300790325|ref|YP_003770616.1| hypothetical protein AMED_8518 ... 107 6e-22
gi|226305719|ref|YP_002765679.1| resuscitation-promoting factor ... 107 6e-22
gi|325003415|ref|ZP_08124527.1| resuscitation-promoting factor [... 107 7e-22
gi|315441569|ref|YP_004074446.1| transglycosylase-like protein [... 107 7e-22
gi|163841267|ref|YP_001625672.1| transglycosylase family protein... 107 9e-22
>gi|15841354|ref|NP_336391.1| hypothetical protein MT1932 [Mycobacterium tuberculosis CDC1551]
gi|254232061|ref|ZP_04925388.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
C]
gi|13881587|gb|AAK46205.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|124601120|gb|EAY60130.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
C]
Length=188
Score = 350 bits (899), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 176/176 (100%), Positives = 176/176 (100%), Gaps = 0/176 (0%)
Query 1 VHPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL 60
VHPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL
Sbjct 13 VHPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL 72
Query 61 STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ 120
STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ
Sbjct 73 STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ 132
Query 121 QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR 176
QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR
Sbjct 133 QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR 188
>gi|15609021|ref|NP_216400.1| resuscitation-promoting factor RpfC [Mycobacterium tuberculosis
H37Rv]
gi|31793075|ref|NP_855568.1| resuscitation-promoting factor RpfC [Mycobacterium bovis AF2122/97]
gi|121637788|ref|YP_978011.1| putative resuscitation-promoting factor rpfC [Mycobacterium bovis
BCG str. Pasteur 1173P2]
35 more sequence titles
Length=176
Score = 350 bits (899), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 175/176 (99%), Positives = 176/176 (100%), Gaps = 0/176 (0%)
Query 1 VHPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL 60
+HPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL
Sbjct 1 MHPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL 60
Query 61 STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ 120
STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ
Sbjct 61 STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ 120
Query 121 QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR 176
QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR
Sbjct 121 QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR 176
>gi|340626892|ref|YP_004745344.1| putative resuscitation-promoting factor RPFC [Mycobacterium canettii
CIPT 140010059]
gi|340005082|emb|CCC44231.1| putative resuscitation-promoting factor RPFC [Mycobacterium canettii
CIPT 140010059]
Length=176
Score = 349 bits (895), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 174/176 (99%), Positives = 176/176 (100%), Gaps = 0/176 (0%)
Query 1 VHPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL 60
++PLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL
Sbjct 1 MYPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL 60
Query 61 STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ 120
STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ
Sbjct 61 STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ 120
Query 121 QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR 176
QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR
Sbjct 121 QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR 176
>gi|289554342|ref|ZP_06443552.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
KZN 605]
gi|289438974|gb|EFD21467.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
KZN 605]
Length=181
Score = 348 bits (894), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 175/176 (99%), Positives = 175/176 (99%), Gaps = 0/176 (0%)
Query 1 VHPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL 60
VHPLPADHGRSRCNR PISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL
Sbjct 6 VHPLPADHGRSRCNRRPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL 65
Query 61 STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ 120
STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ
Sbjct 66 STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ 125
Query 121 QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR 176
QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR
Sbjct 126 QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR 181
>gi|253799072|ref|YP_003032073.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
KZN 1435]
gi|254550896|ref|ZP_05141343.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289762035|ref|ZP_06521413.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
GM 1503]
7 more sequence titles
Length=176
Score = 347 bits (891), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 174/176 (99%), Positives = 175/176 (99%), Gaps = 0/176 (0%)
Query 1 VHPLPADHGRSRCNRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL 60
+HPLPADHGRSRCNR PISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL
Sbjct 1 MHPLPADHGRSRCNRRPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSL 60
Query 61 STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ 120
STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ
Sbjct 61 STAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQ 120
Query 121 QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR 176
QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR
Sbjct 121 QIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR 176
>gi|323719626|gb|EGB28749.1| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
CDC1551A]
Length=143
Score = 283 bits (723), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 143/143 (100%), Positives = 143/143 (100%), Gaps = 0/143 (0%)
Query 34 MSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGK 93
MSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGK
Sbjct 1 MSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGK 60
Query 94 YGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSK 153
YGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSK
Sbjct 61 YGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSK 120
Query 154 PAQGIKQIINEIIWAGIQASIPR 176
PAQGIKQIINEIIWAGIQASIPR
Sbjct 121 PAQGIKQIINEIIWAGIQASIPR 143
>gi|308231968|ref|ZP_07414442.2| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
SUMu001]
gi|308369549|ref|ZP_07418224.2| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
SUMu002]
gi|308370848|ref|ZP_07422950.2| resuscitation-promoting factor rpfC [Mycobacterium tuberculosis
SUMu003]
23 more sequence titles
Length=140
Score = 278 bits (710), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 140/140 (100%), Positives = 140/140 (100%), Gaps = 0/140 (0%)
Query 37 MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG 96
MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG
Sbjct 1 MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG 60
Query 97 LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQ 156
LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQ
Sbjct 61 LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQ 120
Query 157 GIKQIINEIIWAGIQASIPR 176
GIKQIINEIIWAGIQASIPR
Sbjct 121 GIKQIINEIIWAGIQASIPR 140
>gi|41407705|ref|NP_960541.1| hypothetical protein MAP1607c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396058|gb|AAS03924.1| hypothetical protein MAP_1607c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=170
Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/163 (66%), Positives = 125/163 (77%), Gaps = 4/163 (2%)
Query 14 NRHPISPLSLIGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNW 73
+R IS IGNA AT ++ MT + K L+KS + G V ASM+ ST V A P+PNW
Sbjct 12 DRRHISRHFRIGNALATRAEILDMTNLCKLLVKSVVVGGFVAASMASSTGVVSAEPTPNW 71
Query 74 DAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQG 133
DA+AQCESGGNW ANTGNG+YGGLQFKPATWA +GGVGNPAAASREQQIAVANRV AE+G
Sbjct 72 DAIAQCESGGNWHANTGNGEYGGLQFKPATWARYGGVGNPAAASREQQIAVANRVFAEEG 131
Query 134 LDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR 176
++ WP CGA SGLPI +S PAQGIKQIIN + IQA++PR
Sbjct 132 VEPWPKCGAQSGLPIGWYSHPAQGIKQIINGL----IQAAVPR 170
>gi|296164903|ref|ZP_06847459.1| transglycosylase domain protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899745|gb|EFG79195.1| transglycosylase domain protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=149
Score = 203 bits (516), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 100/153 (66%), Positives = 120/153 (79%), Gaps = 4/153 (2%)
Query 24 IGNASATSGDMSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGG 83
+GNA AT+ ++ M + KPL+KS G V AS++ ST+V A P+PNWDA+AQCESGG
Sbjct 1 MGNALATAAEIQDMKILCKPLVKSLAVGGFVAASIASSTSVVSAAPTPNWDAIAQCESGG 60
Query 84 NWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAA 143
NW ANTGNG YGGLQFKP TW +GGVGNPAAASREQQIAVANRV A+QG++AWP CGAA
Sbjct 61 NWHANTGNGNYGGLQFKPGTWQRYGGVGNPAAASREQQIAVANRVFADQGVEAWPKCGAA 120
Query 144 SGLPIALWSKPAQGIKQIINEIIWAGIQASIPR 176
SGLPI +S PAQGIK+IIN + IQA++P
Sbjct 121 SGLPIGWYSHPAQGIKEIINGL----IQAAVPH 149
>gi|336457545|gb|EGO36551.1| transglycosylase-like protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=136
Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/140 (70%), Positives = 113/140 (81%), Gaps = 4/140 (2%)
Query 37 MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG 96
MT + K L+KS + G V ASM+ ST V A P+PNWDA+AQCESGGNW ANTGNG+YGG
Sbjct 1 MTNLCKLLVKSVVVGGFVAASMASSTGVVSAEPTPNWDAIAQCESGGNWHANTGNGEYGG 60
Query 97 LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQ 156
LQFKPATWA +GGVGNPAAASREQQIAVANRV AE+G++ WP CGA SGLPI +S PAQ
Sbjct 61 LQFKPATWARYGGVGNPAAASREQQIAVANRVFAEEGVEPWPKCGAQSGLPIGWYSHPAQ 120
Query 157 GIKQIINEIIWAGIQASIPR 176
GIKQIIN + IQA++PR
Sbjct 121 GIKQIINGL----IQAAVPR 136
>gi|15828097|ref|NP_302360.1| hypothetical protein ML2030 [Mycobacterium leprae TN]
gi|221230574|ref|YP_002503990.1| hypothetical protein MLBr_02030 [Mycobacterium leprae Br4923]
gi|13093651|emb|CAC30985.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933681|emb|CAR72127.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=157
Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 99/141 (71%), Positives = 115/141 (82%), Gaps = 3/141 (2%)
Query 32 GDMSSMTRIAKPLIKSAMAAGLVTASMSLSTA--VAHAGP-SPNWDAVAQCESGGNWAAN 88
G+M + ++ K +KSA+ +G+VTASM+LST+ +A+A P PNWDAVAQCESG NW AN
Sbjct 5 GEMLDVRKLCKLFVKSAVVSGIVTASMALSTSTGMANAVPREPNWDAVAQCESGRNWRAN 64
Query 89 TGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPI 148
TGNG YGGLQFKP WA +GGVGNPA ASREQQI VANRVLA+QGLDAWP CGAAS LPI
Sbjct 65 TGNGFYGGLQFKPTIWARYGGVGNPAGASREQQITVANRVLADQGLDAWPKCGAASDLPI 124
Query 149 ALWSKPAQGIKQIINEIIWAG 169
LWS PAQG+KQIIN+II G
Sbjct 125 TLWSHPAQGVKQIINDIIQMG 145
>gi|342859533|ref|ZP_08716186.1| hypothetical protein MCOL_11658 [Mycobacterium colombiense CECT
3035]
gi|342132665|gb|EGT85885.1| hypothetical protein MCOL_11658 [Mycobacterium colombiense CECT
3035]
Length=145
Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/148 (65%), Positives = 114/148 (78%), Gaps = 4/148 (2%)
Query 29 ATSGDMSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAAN 88
AT ++ M + K L+KS G + ASM+ S V A P+PNWDA+AQCESGGNW AN
Sbjct 2 ATRAEILDMKYLCKLLVKSVAVGGFIAASMASSAGVVSAEPTPNWDAIAQCESGGNWHAN 61
Query 89 TGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPI 148
TGNG+YGGLQFKP+TWA +GGVGNPAAASREQQIAVANRV AE+G++AWP CGA SGLPI
Sbjct 62 TGNGEYGGLQFKPSTWARYGGVGNPAAASREQQIAVANRVFAEEGVEAWPKCGANSGLPI 121
Query 149 ALWSKPAQGIKQIINEIIWAGIQASIPR 176
+S PAQGIKQIIN + IQA++P
Sbjct 122 GWYSHPAQGIKQIINGL----IQAAVPH 145
>gi|118464653|ref|YP_882005.1| resuscitation-promoting factor RpfA [Mycobacterium avium 104]
gi|254775297|ref|ZP_05216813.1| hypothetical protein MaviaA2_11586 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118165940|gb|ABK66837.1| resuscitation-promoting factor RpfA [Mycobacterium avium 104]
Length=109
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/110 (77%), Positives = 95/110 (87%), Gaps = 4/110 (3%)
Query 67 AGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVAN 126
A P+PNWDA+AQCESGGNW ANTGNG+YGGLQFKPATWA +GGVGNPAAASREQQIAVAN
Sbjct 4 AEPTPNWDAIAQCESGGNWHANTGNGEYGGLQFKPATWARYGGVGNPAAASREQQIAVAN 63
Query 127 RVLAEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR 176
RV AE+G++ WP CGA SGLPI +S PAQGIKQIIN + IQA++PR
Sbjct 64 RVFAEEGVEPWPKCGAQSGLPIGWYSHPAQGIKQIINGL----IQAAVPR 109
>gi|254819297|ref|ZP_05224298.1| hypothetical protein MintA_05188 [Mycobacterium intracellulare
ATCC 13950]
Length=109
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/107 (76%), Positives = 91/107 (86%), Gaps = 4/107 (3%)
Query 70 SPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVL 129
+PNWDA+AQCESGGNW ANTGNG YGGLQFKPATWA +GGVGNPAAASREQQIAVANRV
Sbjct 7 APNWDAIAQCESGGNWHANTGNGNYGGLQFKPATWARYGGVGNPAAASREQQIAVANRVF 66
Query 130 AEQGLDAWPTCGAASGLPIALWSKPAQGIKQIINEIIWAGIQASIPR 176
AE+G++ WP CGA SGLPI +S PAQGIKQIIN + IQA++P
Sbjct 67 AEEGVEPWPKCGAQSGLPIGWYSHPAQGIKQIINGL----IQAAVPH 109
>gi|118618374|ref|YP_906706.1| resuscitation-promoting factor-like protein [Mycobacterium ulcerans
Agy99]
gi|118570484|gb|ABL05235.1| resuscitation-promoting factor-like protein [Mycobacterium ulcerans
Agy99]
Length=146
Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 82/117 (71%), Positives = 92/117 (79%), Gaps = 1/117 (0%)
Query 29 ATSGDMSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAAN 88
ATS + S MT IAKPL KSA+A G V ASMSLST VA A NW+AVAQCESGGNW+ N
Sbjct 2 ATSAEKSDMTHIAKPLTKSALAGGFVVASMSLSTGVAQA-DLMNWEAVAQCESGGNWSVN 60
Query 89 TGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASG 145
TGNG YGGLQFK ATW +GGVGNPA+AS++QQIA+ANRVLA QG AWP C +A G
Sbjct 61 TGNGAYGGLQFKQATWEEYGGVGNPASASKQQQIAIANRVLAGQGPAAWPKCSSAGG 117
>gi|183982778|ref|YP_001851069.1| resuscitation-promoting factor-like protein [Mycobacterium marinum
M]
gi|183176104|gb|ACC41214.1| resuscitation-promoting factor-like protein [Mycobacterium marinum
M]
Length=137
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/109 (73%), Positives = 88/109 (81%), Gaps = 1/109 (0%)
Query 37 MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG 96
MT IAKPL KSA+A G V ASMSLST VA A NW+AVAQCESGGNW+ANTGNG YGG
Sbjct 1 MTHIAKPLTKSALAGGFVVASMSLSTGVAQA-DLMNWEAVAQCESGGNWSANTGNGAYGG 59
Query 97 LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASG 145
LQFK ATW +GGVGNPA+AS++QQIA+ANRVLA QG AWP C +A G
Sbjct 60 LQFKQATWEEYGGVGNPASASKQQQIAIANRVLAGQGPAAWPKCSSAGG 108
>gi|240170530|ref|ZP_04749189.1| resuscitation-promoting factor-like protein [Mycobacterium kansasii
ATCC 12478]
Length=141
Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 90/135 (67%), Positives = 100/135 (75%), Gaps = 3/135 (2%)
Query 34 MSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGK 93
M MTRIAKPLIKSA AA V ASMSLST +AHA NWDAVAQCESGGNW ANTGNG
Sbjct 1 MPDMTRIAKPLIKSATAAAFVAASMSLSTGIAHA-DVMNWDAVAQCESGGNWTANTGNGA 59
Query 94 YGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASG--LPIALW 151
YGGLQFK ATW +GGVGNPA AS++QQIAVANRVLA QG AWP C +A G +
Sbjct 60 YGGLQFKQATWDEYGGVGNPATASKQQQIAVANRVLAGQGPAAWPKCASAGGLPPVPVVL 119
Query 152 SKPAQGIKQIINEII 166
KP + ++Q + EII
Sbjct 120 PKPVRQLQQTVTEII 134
>gi|118469017|ref|YP_888904.1| hypothetical protein MSMEG_4640 [Mycobacterium smegmatis str.
MC2 155]
gi|118170304|gb|ABK71200.1| secreted protein [Mycobacterium smegmatis str. MC2 155]
Length=153
Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/105 (66%), Positives = 77/105 (74%), Gaps = 2/105 (1%)
Query 47 SAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAA 106
+A+A L M LS A A A S NWDA+A CESGGNW+ NTGNG YGGLQFK +TWAA
Sbjct 8 TALAGALAMGPMVLSPATA-AADSVNWDAIAACESGGNWSTNTGNGHYGGLQFKQSTWAA 66
Query 107 FGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALW 151
GGVG+PA ASREQQIAVA VL QGL AWP CGA G+P A+W
Sbjct 67 HGGVGSPATASREQQIAVAENVLRTQGLAAWPKCGARGGVP-AVW 110
>gi|120404915|ref|YP_954744.1| transglycosylase domain-containing protein [Mycobacterium vanbaalenii
PYR-1]
gi|119957733|gb|ABM14738.1| Transglycosylase domain protein [Mycobacterium vanbaalenii PYR-1]
Length=170
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/124 (56%), Positives = 85/124 (69%), Gaps = 4/124 (3%)
Query 34 MSSMTRIAKPLIKSAMAAGLVTASMSL--STAVAHAGPSPNWDAVAQCESGGNWAANTGN 91
M+ ++K L+ +A++ L M++ +TA AHA S NWDA+AQCESGGNWA NTGN
Sbjct 1 MNVRKVVSKGLMAAAISGALAVVPMAMDGTTATAHA-DSVNWDAIAQCESGGNWAINTGN 59
Query 92 GKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALW 151
G +GGLQFK ATW+A GGVGNPAAA R +QI VA VL QGL AWP CG A G+ +W
Sbjct 60 GHFGGLQFKQATWSANGGVGNPAAAPRHEQIRVAENVLRTQGLKAWPKCG-AKGMAAQVW 118
Query 152 SKPA 155
A
Sbjct 119 GNTA 122
>gi|145223207|ref|YP_001133885.1| transglycosylase domain-containing protein [Mycobacterium gilvum
PYR-GCK]
gi|315443665|ref|YP_004076544.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
gi|145215693|gb|ABP45097.1| Transglycosylase domain protein [Mycobacterium gilvum PYR-GCK]
gi|315261968|gb|ADT98709.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
Length=170
Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/116 (59%), Positives = 80/116 (69%), Gaps = 4/116 (3%)
Query 42 KPLIKSAMAAGLVTASMSLS--TAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF 99
K L+ +A++ L M+L TA AHA S NWDA+AQCESGGNWA NTGNG +GGLQF
Sbjct 9 KGLMAAAISGALAVVPMALDGGTATAHA-DSVNWDAIAQCESGGNWAINTGNGHFGGLQF 67
Query 100 KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPA 155
K ATW+A GGVGNPA A R +QI VA VL QG+ AWP CG A G+ +W PA
Sbjct 68 KQATWSANGGVGNPARAPRHEQIRVAENVLRTQGIKAWPKCG-AKGMAAQVWGNPA 122
>gi|333990993|ref|YP_004523607.1| resuscitation-promoting [Mycobacterium sp. JDM601]
gi|333486961|gb|AEF36353.1| resuscitation-promoting [Mycobacterium sp. JDM601]
Length=114
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/95 (66%), Positives = 72/95 (76%), Gaps = 4/95 (4%)
Query 73 WDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQ 132
WDAVAQCESGGNWAA+TGNG YGGLQFKP+TW AFGGVG P+ ASRE+QIAVANRVL EQ
Sbjct 21 WDAVAQCESGGNWAADTGNGFYGGLQFKPSTWRAFGGVGLPSKASREEQIAVANRVLDEQ 80
Query 133 GLDAWPTCGAASGLPIAL--WSKPAQGIKQIINEI 165
G AWP CG P ++ W PA ++Q++
Sbjct 81 GPYAWPKCGPGKVFPSSVKGWVPPA--MRQLLKPF 113
>gi|169631158|ref|YP_001704807.1| hypothetical protein MAB_4080c [Mycobacterium abscessus ATCC
19977]
gi|169243125|emb|CAM64153.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=146
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/88 (71%), Positives = 70/88 (80%), Gaps = 1/88 (1%)
Query 53 LVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGN 112
L S+S++ +VA A S NWDAVA+CESGGNW+ANTGNG YGGLQFKP+TWAA GGVGN
Sbjct 20 LFMMSLSMTASVASA-DSMNWDAVAECESGGNWSANTGNGFYGGLQFKPSTWAAHGGVGN 78
Query 113 PAAASREQQIAVANRVLAEQGLDAWPTC 140
PA ASRE+QIAVA VL QG AWP C
Sbjct 79 PAEASREEQIAVAEDVLRTQGPGAWPKC 106
>gi|108800529|ref|YP_640726.1| transglycosylase-like protein [Mycobacterium sp. MCS]
gi|119869668|ref|YP_939620.1| transglycosylase domain-containing protein [Mycobacterium sp.
KMS]
gi|126436145|ref|YP_001071836.1| transglycosylase domain-containing protein [Mycobacterium sp.
JLS]
gi|108770948|gb|ABG09670.1| Transglycosylase-like protein [Mycobacterium sp. MCS]
gi|119695757|gb|ABL92830.1| Transglycosylase domain protein [Mycobacterium sp. KMS]
gi|126235945|gb|ABN99345.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=171
Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/123 (53%), Positives = 77/123 (63%), Gaps = 6/123 (4%)
Query 37 MTRIAKPLIK----SAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNG 92
M I K L + + + A S+A A A S NWDA+AQCESGGNW+ NTGNG
Sbjct 1 MINIGKALTRGIWLTVIGAAFALVPTFFSSATASA-DSVNWDAIAQCESGGNWSTNTGNG 59
Query 93 KYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG-AASGLPIALW 151
+GGLQFKP TW++ GG GNPA ASR +QI VA RVLA QGL AWP CG A+W
Sbjct 60 YFGGLQFKPTTWSSHGGRGNPANASRSEQIQVAERVLATQGLKAWPKCGPRGVATRAAVW 119
Query 152 SKP 154
+ P
Sbjct 120 NNP 122
>gi|333990096|ref|YP_004522710.1| resuscitation-promoting factor-like protein [Mycobacterium sp.
JDM601]
gi|333486064|gb|AEF35456.1| resuscitation-promoting factor-like protein [Mycobacterium sp.
JDM601]
Length=108
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/105 (57%), Positives = 71/105 (68%), Gaps = 1/105 (0%)
Query 37 MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG 96
+ + KPL +A+A L+T +++LS A A A S NWDA+A CESGGNW+ NTGNG YGG
Sbjct 2 LKNVRKPLTLAAIAGALITGAVALSDATARA-DSVNWDAIAACESGGNWSINTGNGYYGG 60
Query 97 LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG 141
LQF TW A GG G P ASR +QI VA VL QG+ AWP CG
Sbjct 61 LQFNAGTWRANGGSGMPHNASRSEQIRVAENVLRSQGIGAWPVCG 105
>gi|108799874|ref|YP_640071.1| transglycosylase-like protein [Mycobacterium sp. MCS]
gi|108770293|gb|ABG09015.1| Transglycosylase-like protein [Mycobacterium sp. MCS]
Length=181
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/119 (53%), Positives = 79/119 (67%), Gaps = 5/119 (4%)
Query 28 SATSGDMSSM----TRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGG 83
+ TSG + + ++ K L + A L T S++++T A+A + NWDA+AQCES G
Sbjct 14 TTTSGRVRRLKGFPVQMVKGLGVALTAVALSTTSIAVATPKANAS-TVNWDAIAQCESSG 72
Query 84 NWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGA 142
NWA NTGNG YGGLQF PATW GGVG+P A RE QIA+A RVL QG+ AWP CGA
Sbjct 73 NWAINTGNGFYGGLQFLPATWREHGGVGSPDKAPREYQIAIAERVLRTQGIGAWPVCGA 131
>gi|331699477|ref|YP_004335716.1| transglycosylase-like domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326954166|gb|AEA27863.1| Transglycosylase-like domain protein [Pseudonocardia dioxanivorans
CB1190]
Length=202
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/111 (55%), Positives = 74/111 (67%), Gaps = 1/111 (0%)
Query 37 MTRIAKPLIKSAMAAGLVTASMSLSTA-VAHAGPSPNWDAVAQCESGGNWAANTGNGKYG 95
MT ++K + + AG++ ++ A A+A P+ WD +AQCESGGNWA NTGNG YG
Sbjct 1 MTLVSKRSLARLLVAGVIAVGAPVAVAGTANAAPADAWDRLAQCESGGNWAINTGNGFYG 60
Query 96 GLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGL 146
GLQF +TW A+GG G+P ASR QQIAVA RVLA QG AWP C GL
Sbjct 61 GLQFTLSTWKAYGGTGSPQNASRAQQIAVAERVLAGQGWGAWPACSRKLGL 111
>gi|256379283|ref|YP_003102943.1| transglycosylase domain-containing protein [Actinosynnema mirum
DSM 43827]
gi|255923586|gb|ACU39097.1| Transglycosylase domain protein [Actinosynnema mirum DSM 43827]
Length=205
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/104 (54%), Positives = 72/104 (70%), Gaps = 1/104 (0%)
Query 38 TRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGL 97
+R+ L+ A+ GL++ +++L TA + +WDA+A+CESGGNW+ NTGNG YGGL
Sbjct 10 SRVLTRLVACAVM-GLISGALALGTATTASAQGADWDAIARCESGGNWSINTGNGYYGGL 68
Query 98 QFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG 141
QF P TWAA GG G P ASRE+QI VA VL QG+ AWP CG
Sbjct 69 QFNPGTWAANGGSGMPHQASREEQIRVAENVLRSQGIGAWPHCG 112
>gi|220911770|ref|YP_002487079.1| transglycosylase [Arthrobacter chlorophenolicus A6]
gi|219858648|gb|ACL38990.1| Transglycosylase domain protein [Arthrobacter chlorophenolicus
A6]
Length=212
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/109 (56%), Positives = 76/109 (70%), Gaps = 4/109 (3%)
Query 33 DMSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAG-PSPNWDAVAQCESGGNWAANTGN 91
+ SS +A+ + A A L A ++LST A+A P+ WD++AQCESGGNW+ NTGN
Sbjct 2 NKSSFRTVAR---RGATVAALSVAGVALSTGAANAATPTSTWDSLAQCESGGNWSTNTGN 58
Query 92 GKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTC 140
G GGLQF +TW A+GG G+PA ASREQQIAVA RV A QG AWP+C
Sbjct 59 GFSGGLQFTASTWQAYGGSGSPADASREQQIAVAERVQASQGWGAWPSC 107
>gi|119868984|ref|YP_938936.1| transglycosylase domain-containing protein [Mycobacterium sp.
KMS]
gi|126435517|ref|YP_001071208.1| transglycosylase domain-containing protein [Mycobacterium sp.
JLS]
gi|119695073|gb|ABL92146.1| Transglycosylase domain protein [Mycobacterium sp. KMS]
gi|126235317|gb|ABN98717.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=152
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/103 (59%), Positives = 72/103 (70%), Gaps = 1/103 (0%)
Query 40 IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF 99
+ K L + A L T S++++T A+A + NWDA+AQCES GNWA NTGNG YGGLQF
Sbjct 1 MVKGLGVALTAVALSTTSIAVATPKANAS-TVNWDAIAQCESSGNWAINTGNGFYGGLQF 59
Query 100 KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGA 142
PATW GGVG+P A RE QIA+A RVL QG+ AWP CGA
Sbjct 60 LPATWREHGGVGSPDKAPREYQIAIAERVLRTQGIGAWPVCGA 102
>gi|296140721|ref|YP_003647964.1| transglycosylase domain-containing protein [Tsukamurella paurometabola
DSM 20162]
gi|296028855|gb|ADG79625.1| Transglycosylase domain protein [Tsukamurella paurometabola DSM
20162]
Length=107
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/105 (58%), Positives = 72/105 (69%), Gaps = 1/105 (0%)
Query 37 MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG 96
M I K L A++ +V A ++ T A+AG S NWDA+A CESGGNW+ NTGNG YGG
Sbjct 1 MKNIRKTLGMMAISGAIVAAPVAFGTGAANAG-SVNWDAIAACESGGNWSTNTGNGYYGG 59
Query 97 LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG 141
LQF P+TW A GG G P ASR +QI VA VLA QG+ AWP+CG
Sbjct 60 LQFSPSTWRANGGSGLPHNASRAEQIRVAENVLASQGIGAWPSCG 104
>gi|326383331|ref|ZP_08205019.1| transglycosylase domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326198081|gb|EGD55267.1| transglycosylase domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
Length=107
Score = 114 bits (284), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/107 (57%), Positives = 74/107 (70%), Gaps = 3/107 (2%)
Query 36 SMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYG 95
S+T++A ++A+A L A ++L+ VA A NWDAVAQCESGG+W+ NTGNG YG
Sbjct 2 SLTKLAT---RAAIAGALTIAPLTLAAGVASADTGHNWDAVAQCESGGDWSINTGNGYYG 58
Query 96 GLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGA 142
GLQF +TW A GG G+ ASRE+QI VA VLA QG AWP CGA
Sbjct 59 GLQFSQSTWEANGGSGSANNASREEQIRVAENVLATQGPGAWPVCGA 105
>gi|108800530|ref|YP_640727.1| transglycosylase-like protein [Mycobacterium sp. MCS]
gi|119869669|ref|YP_939621.1| transglycosylase domain-containing protein [Mycobacterium sp.
KMS]
gi|126436146|ref|YP_001071837.1| transglycosylase domain-containing protein [Mycobacterium sp.
JLS]
gi|108770949|gb|ABG09671.1| Transglycosylase-like protein [Mycobacterium sp. MCS]
gi|119695758|gb|ABL92831.1| Transglycosylase domain protein [Mycobacterium sp. KMS]
gi|126235946|gb|ABN99346.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=118
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/105 (56%), Positives = 67/105 (64%), Gaps = 0/105 (0%)
Query 37 MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG 96
+ I K L + A L A M+L A+A NWDAVA CESGGNW+ NTGNG YGG
Sbjct 11 LKNIRKTLGLATFAGALAVAPMALGAGTANADSGVNWDAVAACESGGNWSINTGNGYYGG 70
Query 97 LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG 141
LQF TW + GG G+P ASRE+QI VA VL QG+ AWPTCG
Sbjct 71 LQFTMGTWQSNGGSGSPHNASREEQIRVAENVLQSQGIGAWPTCG 115
>gi|302530572|ref|ZP_07282914.1| predicted protein [Streptomyces sp. AA4]
gi|302439467|gb|EFL11283.1| predicted protein [Streptomyces sp. AA4]
Length=208
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/114 (51%), Positives = 73/114 (65%), Gaps = 3/114 (2%)
Query 32 GDMSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGN 91
G M+ + + + A+A V A ++++ A A NWDA+AQCESGGNW NTGN
Sbjct 5 GKHRKMSAATRTIARVAVAGIAVGAPLAIAATPASA---TNWDAIAQCESGGNWNTNTGN 61
Query 92 GKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASG 145
G YGGLQF +TW A+GG G+P ASREQQIAVA RV+ QG AWP C +G
Sbjct 62 GYYGGLQFTQSTWKAYGGTGSPQGASREQQIAVAERVMQGQGPGAWPVCSKKAG 115
>gi|257067476|ref|YP_003153731.1| transglycosylase-like protein [Brachybacterium faecium DSM 4810]
gi|256558294|gb|ACU84141.1| transglycosylase-like protein [Brachybacterium faecium DSM 4810]
Length=350
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/114 (53%), Positives = 75/114 (66%), Gaps = 4/114 (3%)
Query 39 RIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQ 98
R+A P + +A ++ A + +S A A + WD VAQCESGGNW+ NTGNG YGGLQ
Sbjct 23 RVA-PKMAAATGGAVIAAGLGVSGAGVAAADTAVWDKVAQCESGGNWSINTGNGYYGGLQ 81
Query 99 FKPATWAAFGG---VGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIA 149
F P+TW AFGG GN A++ +QIAVA R LA+QG AWPTCG +GL A
Sbjct 82 FSPSTWRAFGGQEFAGNAHQATKAEQIAVAQRTLAQQGPGAWPTCGKRAGLTKA 135
>gi|120404916|ref|YP_954745.1| transglycosylase domain-containing protein [Mycobacterium vanbaalenii
PYR-1]
gi|119957734|gb|ABM14739.1| Transglycosylase domain protein [Mycobacterium vanbaalenii PYR-1]
Length=111
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/109 (56%), Positives = 70/109 (65%), Gaps = 3/109 (2%)
Query 37 MTRIAKPLIKSAMAAGLVTASMSLSTAVAHA---GPSPNWDAVAQCESGGNWAANTGNGK 93
M I K + +A L A M++ T VA S NWDAVA CESGGNW+ NTGNG
Sbjct 1 MKNIRKTFGLATIAGALAVAPMAVVTGVAAGTANADSVNWDAVAACESGGNWSINTGNGY 60
Query 94 YGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGA 142
YGGLQF TW + GG G+P ASRE+QI VAN VL QG+ AWP+CGA
Sbjct 61 YGGLQFTMGTWQSNGGSGSPHHASREEQIRVANNVLQTQGIGAWPSCGA 109
>gi|257057377|ref|YP_003135209.1| transglycosylase family protein [Saccharomonospora viridis DSM
43017]
gi|256587249|gb|ACU98382.1| transglycosylase family protein [Saccharomonospora viridis DSM
43017]
Length=205
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/72 (70%), Positives = 58/72 (81%), Gaps = 0/72 (0%)
Query 70 SPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVL 129
S NWDA+A+CESGG+W+ NTGNG YGGLQFK +TW A+GG G P ASRE+QIAVA RVL
Sbjct 16 SVNWDAIAECESGGDWSINTGNGYYGGLQFKLSTWQAYGGTGMPHEASREEQIAVAERVL 75
Query 130 AEQGLDAWPTCG 141
QG+ AWP CG
Sbjct 76 QGQGIGAWPVCG 87
>gi|116669469|ref|YP_830402.1| transglycosylase domain-containing protein [Arthrobacter sp.
FB24]
gi|116609578|gb|ABK02302.1| Transglycosylase domain protein [Arthrobacter sp. FB24]
Length=231
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/127 (50%), Positives = 80/127 (63%), Gaps = 14/127 (11%)
Query 34 MSSMTRIAKPLIKSAM--------------AAGLVTASMSLSTAVAHAGPSPNWDAVAQC 79
M++ TR+ P+ KS + AAGL ++ + + AV A + WDA+AQC
Sbjct 1 MNTSTRMNTPMGKSKLGTAARRGVTLAAVSAAGLALSATAANAAVPTATSTSTWDALAQC 60
Query 80 ESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPT 139
ESGGNW+ NTGNG GGLQF +TWAA+GG G+ A+A+REQQIAVA V A QG AWP
Sbjct 61 ESGGNWSTNTGNGFSGGLQFTDSTWAAYGGTGSAASATREQQIAVAENVQASQGWGAWPA 120
Query 140 CGAASGL 146
C A GL
Sbjct 121 CAAKLGL 127
>gi|15609526|ref|NP_216905.1| resuscitation-promoting factor RpfD [Mycobacterium tuberculosis
H37Rv]
gi|15841902|ref|NP_336939.1| hypothetical protein MT2458 [Mycobacterium tuberculosis CDC1551]
gi|31793566|ref|NP_856059.1| resuscitation-promoting factor RpfD [Mycobacterium bovis AF2122/97]
49 more sequence titles
Length=154
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/105 (53%), Positives = 72/105 (69%), Gaps = 1/105 (0%)
Query 40 IAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQF 99
+ I++A+ A + A + LST ++ +WDA+AQCESGGNWAANTGNG YGGLQ
Sbjct 22 VCTVFIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQI 80
Query 100 KPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS 144
ATW + GGVG+PAAAS +QQI VA+ ++ QG AWP C + S
Sbjct 81 SQATWDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS 125
>gi|126437075|ref|YP_001072766.1| transglycosylase domain-containing protein [Mycobacterium sp.
JLS]
gi|126236875|gb|ABO00276.1| Transglycosylase domain protein [Mycobacterium sp. JLS]
Length=153
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/120 (49%), Positives = 78/120 (65%), Gaps = 2/120 (1%)
Query 37 MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG 96
M I + L A++A L+ + + A+A + +WDA+AQCESGG+W+ +TGNG +GG
Sbjct 1 MRAIWRILTSIAVSAALIVTATAAGPTSAYAN-AIDWDAIAQCESGGDWSISTGNGYFGG 59
Query 97 LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAASGLPIALWSKPAQ 156
LQFKP+TWA GG GNPA A+R +QI +A RV QGL AWP CG G+ W PA+
Sbjct 60 LQFKPSTWAEHGGRGNPADAARTEQIRIAERVTRTQGLGAWPVCG-RKGVEHVGWYVPAR 118
>gi|343924791|ref|ZP_08764330.1| putative resuscitation-promoting factor [Gordonia alkanivorans
NBRC 16433]
gi|343765298|dbj|GAA11256.1| putative resuscitation-promoting factor [Gordonia alkanivorans
NBRC 16433]
Length=84
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/73 (74%), Positives = 58/73 (80%), Gaps = 0/73 (0%)
Query 70 SPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVL 129
S NWDAVAQCESGG+W+ NTGNG YGGLQF +TW A GG GNPA ASRE+QI VA VL
Sbjct 10 SGNWDAVAQCESGGDWSINTGNGYYGGLQFSQSTWEANGGSGNPANASREEQIRVAENVL 69
Query 130 AEQGLDAWPTCGA 142
A QG AWPTCGA
Sbjct 70 ATQGPGAWPTCGA 82
>gi|325962335|ref|YP_004240241.1| transglycosylase family protein [Arthrobacter phenanthrenivorans
Sphe3]
gi|323468422|gb|ADX72107.1| transglycosylase family protein [Arthrobacter phenanthrenivorans
Sphe3]
Length=220
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/74 (72%), Positives = 59/74 (80%), Gaps = 0/74 (0%)
Query 73 WDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQ 132
WDA+AQCESGGNWA NTGNG GGLQF P+TWAA+GG G+ A ASREQQIAVA +V A Q
Sbjct 48 WDALAQCESGGNWAINTGNGYSGGLQFSPSTWAAYGGTGSAADASREQQIAVAEQVQAAQ 107
Query 133 GLDAWPTCGAASGL 146
G AWP+C A GL
Sbjct 108 GWGAWPSCSAQLGL 121
>gi|167968732|ref|ZP_02551009.1| resuscitation-promoting factor rpfD [Mycobacterium tuberculosis
H37Ra]
gi|254551437|ref|ZP_05141884.1| resuscitation-promoting factor rpfD [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|308232117|ref|ZP_07664005.1| resuscitation-promoting factor rpfD [Mycobacterium tuberculosis
SUMu001]
26 more sequence titles
Length=130
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/101 (55%), Positives = 71/101 (71%), Gaps = 1/101 (0%)
Query 44 LIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPAT 103
I++A+ A + A + LST ++ +WDA+AQCESGGNWAANTGNG YGGLQ AT
Sbjct 2 FIETAVVATMFVALLGLST-ISSKADDIDWDAIAQCESGGNWAANTGNGLYGGLQISQAT 60
Query 104 WAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCGAAS 144
W + GGVG+PAAAS +QQI VA+ ++ QG AWP C + S
Sbjct 61 WDSNGGVGSPAAASPQQQIEVADNIMKTQGPGAWPKCSSCS 101
>gi|169628687|ref|YP_001702336.1| hypothetical protein MAB_1597 [Mycobacterium abscessus ATCC 19977]
gi|169240654|emb|CAM61682.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=110
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/94 (63%), Positives = 65/94 (70%), Gaps = 2/94 (2%)
Query 48 AMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAF 107
AMA LV A M+L+ A A P NWDA+A CESGGNW NTGNG YGGLQF TW A
Sbjct 16 AMAPALVAAPMALA-GTASADPV-NWDAIAACESGGNWGINTGNGYYGGLQFNLGTWRAN 73
Query 108 GGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG 141
GG G+P ASRE+QI VA VLA QG+ AWP CG
Sbjct 74 GGSGSPHLASREEQIRVAENVLARQGIGAWPVCG 107
>gi|262203254|ref|YP_003274462.1| transglycosylase [Gordonia bronchialis DSM 43247]
gi|262086601|gb|ACY22569.1| Transglycosylase domain protein [Gordonia bronchialis DSM 43247]
Length=106
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/106 (56%), Positives = 70/106 (67%), Gaps = 4/106 (3%)
Query 36 SMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYG 95
SMT++ + ++A+ L A L A A + NWDAVAQCESGGNWA NTGNG YG
Sbjct 2 SMTKL---VARAAVVGALTAAPFGLLATTASA-DTHNWDAVAQCESGGNWAINTGNGYYG 57
Query 96 GLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG 141
GLQF +TW A GG G+ + ASRE+QI VA VLA QG AWP CG
Sbjct 58 GLQFTQSTWEANGGSGSASNASREEQIRVAENVLATQGPGAWPVCG 103
>gi|229490962|ref|ZP_04384795.1| secreted protein [Rhodococcus erythropolis SK121]
gi|229322078|gb|EEN87866.1| secreted protein [Rhodococcus erythropolis SK121]
Length=184
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/107 (54%), Positives = 70/107 (66%), Gaps = 2/107 (1%)
Query 36 SMTRIAKPLIKS-AMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKY 94
+ T I+K + A+A LV +++ST A A + NWD VAQCESGG+W NTGNG Y
Sbjct 2 TYTSISKRAFGTLAVAGALVAVPLTMSTGTASAA-THNWDGVAQCESGGDWNINTGNGYY 60
Query 95 GGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG 141
GGLQF +TW A GG G+PA AS+E+QI VA L QG AWP CG
Sbjct 61 GGLQFSQSTWTANGGTGSPANASKEEQIRVAENTLQSQGPGAWPVCG 107
>gi|300790325|ref|YP_003770616.1| hypothetical protein AMED_8518 [Amycolatopsis mediterranei U32]
gi|299799839|gb|ADJ50214.1| secreted protein [Amycolatopsis mediterranei U32]
gi|340532006|gb|AEK47211.1| hypothetical protein RAM_43720 [Amycolatopsis mediterranei S699]
Length=215
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/109 (51%), Positives = 71/109 (66%), Gaps = 3/109 (2%)
Query 32 GDMSSMTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGN 91
G M+ + + + A+A V A ++++ A A NWDA+AQCES GNW NTGN
Sbjct 5 GKHRKMSAATRTVARVAIAGIAVGAPLAIAATPASA---TNWDAIAQCESSGNWNTNTGN 61
Query 92 GKYGGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTC 140
G YGGLQF +TW A+GG G+ A ASR++QIAVA RVL QG+ AWP C
Sbjct 62 GYYGGLQFTQSTWKAYGGSGSAANASRDEQIAVAERVLQGQGIGAWPVC 110
>gi|226305719|ref|YP_002765679.1| resuscitation-promoting factor [Rhodococcus erythropolis PR4]
gi|226184836|dbj|BAH32940.1| putative resuscitation-promoting factor [Rhodococcus erythropolis
PR4]
Length=184
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/107 (54%), Positives = 70/107 (66%), Gaps = 2/107 (1%)
Query 36 SMTRIAKPLIKS-AMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKY 94
+ T I+K + A+A LV +++ST A A + NWD VAQCESGG+W NTGNG Y
Sbjct 2 TYTSISKRAFGTLAVAGALVAVPLTMSTGTASAA-THNWDGVAQCESGGDWNINTGNGYY 60
Query 95 GGLQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG 141
GGLQF +TW A GG G+PA AS+E+QI VA L QG AWP CG
Sbjct 61 GGLQFSQSTWTANGGTGSPANASKEEQIRVAENTLQSQGPGAWPVCG 107
>gi|325003415|ref|ZP_08124527.1| resuscitation-promoting factor [Pseudonocardia sp. P1]
Length=848
Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/81 (63%), Positives = 60/81 (75%), Gaps = 1/81 (1%)
Query 61 STAVAHAGPSP-NWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASRE 119
+TA A G P WD +A+CESGG+WA +TGNG GGLQF P+TW AFGG G+P ASRE
Sbjct 761 ATATAGGGTDPATWDKLAECESGGDWATDTGNGYSGGLQFAPSTWEAFGGQGDPHQASRE 820
Query 120 QQIAVANRVLAEQGLDAWPTC 140
+QIAVA +V AEQG AWP C
Sbjct 821 EQIAVAEKVQAEQGWGAWPAC 841
>gi|315441569|ref|YP_004074446.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
gi|315265224|gb|ADU01965.1| transglycosylase-like protein [Mycobacterium sp. Spyr1]
Length=153
Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/105 (50%), Positives = 72/105 (69%), Gaps = 1/105 (0%)
Query 37 MTRIAKPLIKSAMAAGLVTASMSLSTAVAHAGPSPNWDAVAQCESGGNWAANTGNGKYGG 96
M + + L A++ L + ++ A+A + +WDA+AQCESGG+W+ +TGNG +GG
Sbjct 1 MRAVCRFLTAIAVSGALAVTAHAVDPISAYAN-AIDWDAIAQCESGGDWSISTGNGYFGG 59
Query 97 LQFKPATWAAFGGVGNPAAASREQQIAVANRVLAEQGLDAWPTCG 141
LQF+P+TWA GG GNPA A+R +QI VA RV+ QGL AWP CG
Sbjct 60 LQFQPSTWAEHGGRGNPANAARTEQIRVAERVIGTQGLGAWPVCG 104
>gi|163841267|ref|YP_001625672.1| transglycosylase family protein [Renibacterium salmoninarum ATCC
33209]
gi|162954743|gb|ABY24258.1| transglycosylase family protein [Renibacterium salmoninarum ATCC
33209]
Length=220
Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/83 (64%), Positives = 57/83 (69%), Gaps = 0/83 (0%)
Query 64 VAHAGPSPNWDAVAQCESGGNWAANTGNGKYGGLQFKPATWAAFGGVGNPAAASREQQIA 123
A A WDA+AQCESGGNW NTGNG GGLQF P+TW A GG G+P ASREQQIA
Sbjct 32 TAQAADGGTWDALAQCESGGNWGINTGNGFSGGLQFTPSTWVANGGTGSPQGASREQQIA 91
Query 124 VANRVLAEQGLDAWPTCGAASGL 146
VA RV+ QG AWP C A GL
Sbjct 92 VAERVVQTQGWGAWPACSAKLGL 114
Lambda K H
0.315 0.128 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 149040830208
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40