BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1888c Length=186 Score E Sequences producing significant alignments: (Bits) Value gi|15609025|ref|NP_216404.1| transmembrane protein [Mycobacteriu... 365 2e-99 gi|167970371|ref|ZP_02552648.1| hypothetical protein MtubH3_2101... 363 7e-99 gi|15841358|ref|NP_336395.1| hypothetical protein MT1936 [Mycoba... 326 1e-87 gi|289443366|ref|ZP_06433110.1| conserved hypothetical protein [... 326 1e-87 gi|253799068|ref|YP_003032069.1| hypothetical protein TBMG_02106... 325 3e-87 gi|308379062|ref|ZP_07484880.2| hypothetical protein TMJG_00133 ... 324 4e-87 gi|31793079|ref|NP_855572.1| transmembrane protein [Mycobacteriu... 324 4e-87 gi|289574570|ref|ZP_06454797.1| conserved hypothetical protein [... 323 5e-87 gi|183982786|ref|YP_001851077.1| hypothetical protein MMAR_2780 ... 276 8e-73 gi|118618366|ref|YP_906698.1| hypothetical protein MUL_2967 [Myc... 274 5e-72 gi|72163423|ref|YP_291080.1| transmembrane protein [Thermobifida... 216 1e-54 gi|111017087|ref|YP_700059.1| hypothetical protein RHA1_ro00065 ... 213 1e-53 gi|220912823|ref|YP_002488132.1| hypothetical protein Achl_2070 ... 206 1e-51 gi|302553799|ref|ZP_07306141.1| transmembrane protein [Streptomy... 205 2e-51 gi|297197529|ref|ZP_06914926.1| transmembrane protein [Streptomy... 204 4e-51 gi|290955005|ref|YP_003486187.1| protein [Streptomyces scabiei 8... 201 6e-50 gi|325963462|ref|YP_004241368.1| hypothetical protein Asphe3_208... 199 2e-49 gi|284991951|ref|YP_003410505.1| transmembrane protein [Geoderma... 196 2e-48 gi|336118719|ref|YP_004573490.1| hypothetical protein MLP_30730 ... 195 3e-48 gi|116672503|ref|YP_833436.1| hypothetical protein Arth_3961 [Ar... 194 4e-48 gi|312195220|ref|YP_004015281.1| transmembrane protein [Frankia ... 190 8e-47 gi|319948031|ref|ZP_08022207.1| hypothetical protein ES5_01839 [... 190 1e-46 gi|326332434|ref|ZP_08198710.1| hypothetical protein NBCG_03880 ... 188 3e-46 gi|284992599|ref|YP_003411153.1| transmembrane protein [Geoderma... 184 4e-45 gi|62511916|gb|AAX84521.1| hypothetical protein [uncultured bact... 183 1e-44 gi|331696113|ref|YP_004332352.1| hypothetical protein Psed_2286 ... 179 1e-43 gi|302557019|ref|ZP_07309361.1| conserved hypothetical protein [... 177 6e-43 gi|158318666|ref|YP_001511174.1| putative transmembrane protein ... 167 5e-40 gi|343925678|ref|ZP_08765195.1| hypothetical protein GOALK_048_0... 167 8e-40 gi|291300933|ref|YP_003512211.1| hypothetical protein Snas_3454 ... 152 1e-35 gi|240167764|ref|ZP_04746423.1| hypothetical protein MkanA1_0051... 149 2e-34 gi|254822311|ref|ZP_05227312.1| hypothetical protein MintA_20419... 149 3e-34 gi|342861837|ref|ZP_08718482.1| hypothetical protein MCOL_23225 ... 146 1e-33 gi|325001692|ref|ZP_08122804.1| integral membrane protein [Pseud... 145 2e-33 gi|41410302|ref|NP_963138.1| hypothetical protein MAP4204 [Mycob... 140 1e-31 gi|118464204|ref|YP_883563.1| hypothetical protein MAV_4428 [Myc... 139 2e-31 gi|298251313|ref|ZP_06975116.1| conserved hypothetical protein [... 106 2e-21 gi|270308772|ref|YP_003330830.1| hypothetical protein DhcVS_1403... 104 6e-21 gi|258651837|ref|YP_003200993.1| hypothetical protein Namu_1612 ... 103 1e-20 gi|289569967|ref|ZP_06450194.1| transmembrane protein [Mycobacte... 102 4e-20 gi|73749299|ref|YP_308538.1| hypothetical protein cbdb_A1599 [De... 97.8 7e-19 gi|86740640|ref|YP_481040.1| hypothetical protein Francci3_1936 ... 93.2 2e-17 gi|258653849|ref|YP_003203005.1| hypothetical protein Namu_3712 ... 92.4 3e-17 gi|313675782|ref|YP_004053778.1| transmembrane protein [Marivirg... 87.4 9e-16 gi|119713503|gb|ABL97556.1| hypothetical protein MBMO_EB0-35D03.... 82.4 3e-14 gi|256396611|ref|YP_003118175.1| hypothetical protein Caci_7509 ... 77.0 1e-12 gi|284046009|ref|YP_003396349.1| hypothetical protein Cwoe_4561 ... 72.4 3e-11 gi|291450043|ref|ZP_06589433.1| conserved hypothetical protein [... 70.9 8e-11 gi|182440643|ref|YP_001828362.1| hypothetical protein SGR_6850 [... 70.5 1e-10 gi|326781318|ref|ZP_08240583.1| hypothetical protein SACT1_7210 ... 70.5 1e-10 >gi|15609025|ref|NP_216404.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|148661694|ref|YP_001283217.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra] gi|308231970|ref|ZP_07414446.2| hypothetical protein TMAG_02066 [Mycobacterium tuberculosis SUMu001] gi|339631941|ref|YP_004723583.1| hypothetical protein MAF_19100 [Mycobacterium africanum GM041182] gi|2225972|emb|CAB10043.1| POSSIBLE TRANSMEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148505846|gb|ABQ73655.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra] gi|308215480|gb|EFO74879.1| hypothetical protein TMAG_02066 [Mycobacterium tuberculosis SUMu001] gi|339331297|emb|CCC26980.1| putative transmembrane protein [Mycobacterium africanum GM041182] Length=186 Score = 365 bits (936), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%), Gaps = 0/186 (0%) Query 1 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 60 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR Sbjct 1 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 60 Query 61 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 120 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV Sbjct 61 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 120 Query 121 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 180 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP Sbjct 121 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 180 Query 181 IGLYNL 186 IGLYNL Sbjct 181 IGLYNL 186 >gi|167970371|ref|ZP_02552648.1| hypothetical protein MtubH3_21013 [Mycobacterium tuberculosis H37Ra] Length=199 Score = 363 bits (932), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 185/186 (99%), Positives = 185/186 (99%), Gaps = 0/186 (0%) Query 1 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 60 MQPDAYPVRVRGDLDPALSRWQWLVK FLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR Sbjct 14 MQPDAYPVRVRGDLDPALSRWQWLVKCFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 73 Query 61 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 120 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV Sbjct 74 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 133 Query 121 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 180 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP Sbjct 134 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 193 Query 181 IGLYNL 186 IGLYNL Sbjct 194 IGLYNL 199 >gi|15841358|ref|NP_336395.1| hypothetical protein MT1936 [Mycobacterium tuberculosis CDC1551] gi|13881592|gb|AAK46209.1| hypothetical protein MT1936 [Mycobacterium tuberculosis CDC1551] Length=321 Score = 326 bits (835), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%), Gaps = 0/186 (0%) Query 1 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 60 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR Sbjct 83 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 142 Query 61 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 120 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV Sbjct 143 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 202 Query 121 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 180 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP Sbjct 203 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 262 Query 181 IGLYNL 186 IGLYNL Sbjct 263 IGLYNL 268 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/131 (35%), Positives = 59/131 (46%), Gaps = 27/131 (20%) Query 6 YPVRVRGDLDPALSRWQWLVKWFL-AIPHYIVLFFLHVAAVVVTVI-------------- 50 YP + D LSR L+KW+L AIPHY++L + V +I Sbjct 185 YPADLEVDYPERLSRGLVLIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLL 244 Query 51 ------AFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSL----QTK 100 A A+LFTGRYP L++ +GV RW RV Y + L D YPP L + + Sbjct 245 VILLLVAVVALLFTGRYPIGLYNLVIGVNRWALRVRAY--TTLMRDEYPPLRLDMGPREQ 302 Query 101 AEYPADLEVDY 111 PA DY Sbjct 303 VSQPATAASDY 313 >gi|289443366|ref|ZP_06433110.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289447502|ref|ZP_06437246.1| transmembrane protein [Mycobacterium tuberculosis CPHL_A] gi|289416285|gb|EFD13525.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289420460|gb|EFD17661.1| transmembrane protein [Mycobacterium tuberculosis CPHL_A] Length=298 Score = 326 bits (835), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%), Gaps = 0/186 (0%) Query 1 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 60 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR Sbjct 60 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 119 Query 61 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 120 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV Sbjct 120 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 179 Query 121 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 180 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP Sbjct 180 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 239 Query 181 IGLYNL 186 IGLYNL Sbjct 240 IGLYNL 245 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/131 (35%), Positives = 58/131 (45%), Gaps = 27/131 (20%) Query 6 YPVRVRGDLDPALSRWQWLVKW-FLAIPHYIVLFFLHVAAVVVTVI-------------- 50 YP + D LSR L+KW LAIPHY++L + V +I Sbjct 162 YPADLEVDYPERLSRGLVLIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLL 221 Query 51 ------AFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSL----QTK 100 A A+LFTGRYP L++ +GV RW RV Y + L D YPP L + + Sbjct 222 VILLLVAVVALLFTGRYPIGLYNLVIGVNRWALRVRAY--TTLMRDEYPPLRLDMGPREQ 279 Query 101 AEYPADLEVDY 111 PA DY Sbjct 280 VSQPATAASDY 290 >gi|253799068|ref|YP_003032069.1| hypothetical protein TBMG_02106 [Mycobacterium tuberculosis KZN 1435] gi|254232065|ref|ZP_04925392.1| hypothetical protein TBCG_01840 [Mycobacterium tuberculosis C] gi|254364709|ref|ZP_04980755.1| hypothetical transmembrane protein [Mycobacterium tuberculosis str. Haarlem] 26 more sequence titles Length=252 Score = 325 bits (832), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%), Gaps = 0/186 (0%) Query 1 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 60 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR Sbjct 14 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 73 Query 61 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 120 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV Sbjct 74 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 133 Query 121 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 180 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP Sbjct 134 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 193 Query 181 IGLYNL 186 IGLYNL Sbjct 194 IGLYNL 199 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/131 (35%), Positives = 58/131 (45%), Gaps = 27/131 (20%) Query 6 YPVRVRGDLDPALSRWQWLVKW-FLAIPHYIVLFFLHVAAVVVTVI-------------- 50 YP + D LSR L+KW LAIPHY++L + V +I Sbjct 116 YPADLEVDYPERLSRGLVLIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLL 175 Query 51 ------AFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSL----QTK 100 A A+LFTGRYP L++ +GV RW RV Y + L D YPP L + + Sbjct 176 VILLLVAVVALLFTGRYPIGLYNLVIGVNRWALRVRAY--TTLMRDEYPPLRLDMGPREQ 233 Query 101 AEYPADLEVDY 111 PA DY Sbjct 234 VSQPATAASDY 244 >gi|308379062|ref|ZP_07484880.2| hypothetical protein TMJG_00133 [Mycobacterium tuberculosis SUMu010] gi|308358358|gb|EFP47209.1| hypothetical protein TMJG_00133 [Mycobacterium tuberculosis SUMu010] Length=245 Score = 324 bits (830), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%), Gaps = 0/186 (0%) Query 1 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 60 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR Sbjct 60 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 119 Query 61 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 120 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV Sbjct 120 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 179 Query 121 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 180 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP Sbjct 180 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 239 Query 181 IGLYNL 186 IGLYNL Sbjct 240 IGLYNL 245 >gi|31793079|ref|NP_855572.1| transmembrane protein [Mycobacterium bovis AF2122/97] gi|121637792|ref|YP_978015.1| putative transmembrane protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148823099|ref|YP_001287853.1| hypothetical protein TBFG_11916 [Mycobacterium tuberculosis F11] 26 more sequence titles Length=239 Score = 324 bits (830), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%), Gaps = 0/186 (0%) Query 1 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 60 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR Sbjct 1 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 60 Query 61 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 120 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV Sbjct 61 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 120 Query 121 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 180 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP Sbjct 121 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 180 Query 181 IGLYNL 186 IGLYNL Sbjct 181 IGLYNL 186 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/131 (35%), Positives = 58/131 (45%), Gaps = 27/131 (20%) Query 6 YPVRVRGDLDPALSRWQWLVKW-FLAIPHYIVLFFLHVAAVVVTVI-------------- 50 YP + D LSR L+KW LAIPHY++L + V +I Sbjct 103 YPADLEVDYPERLSRGLVLIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLL 162 Query 51 ------AFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSL----QTK 100 A A+LFTGRYP L++ +GV RW RV Y + L D YPP L + + Sbjct 163 VILLLVAVVALLFTGRYPIGLYNLVIGVNRWALRVRAY--TTLMRDEYPPLRLDMGPREQ 220 Query 101 AEYPADLEVDY 111 PA DY Sbjct 221 VSQPATAASDY 231 >gi|289574570|ref|ZP_06454797.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289539001|gb|EFD43579.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] Length=298 Score = 323 bits (829), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 185/186 (99%), Positives = 185/186 (99%), Gaps = 0/186 (0%) Query 1 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 60 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR Sbjct 60 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 119 Query 61 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 120 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV Sbjct 120 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 179 Query 121 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 180 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFT RYP Sbjct 180 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTSRYP 239 Query 181 IGLYNL 186 IGLYNL Sbjct 240 IGLYNL 245 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 44/131 (34%), Positives = 57/131 (44%), Gaps = 27/131 (20%) Query 6 YPVRVRGDLDPALSRWQWLVKW-FLAIPHYIVLFFLHVAAVVVTVI-------------- 50 YP + D LSR L+KW LAIPHY++L + V +I Sbjct 162 YPADLEVDYPERLSRGLVLIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLL 221 Query 51 ------AFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSL----QTK 100 A A+LFT RYP L++ +GV RW RV Y + L D YPP L + + Sbjct 222 VILLLVAVVALLFTSRYPIGLYNLVIGVNRWALRVRAY--TTLMRDEYPPLRLDMGPREQ 279 Query 101 AEYPADLEVDY 111 PA DY Sbjct 280 VSQPATAASDY 290 >gi|183982786|ref|YP_001851077.1| hypothetical protein MMAR_2780 [Mycobacterium marinum M] gi|183176112|gb|ACC41222.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=223 Score = 276 bits (707), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 141/185 (77%), Positives = 160/185 (87%), Gaps = 0/185 (0%) Query 2 QPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRY 61 QP AYPVRVRGD+DPALSRWQWL+KW LAIPHYIVL FL++ A V TVIAFFAIL TGRY Sbjct 3 QPTAYPVRVRGDIDPALSRWQWLIKWILAIPHYIVLVFLYLGAFVATVIAFFAILLTGRY 62 Query 62 PRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVL 121 PR LFDFNVGVMRWRWRVAFYAL+ LGTDRYPPFSL+ +YPADL+V+YP+RL RGLVL Sbjct 63 PRPLFDFNVGVMRWRWRVAFYALTVLGTDRYPPFSLRENPQYPADLDVEYPQRLHRGLVL 122 Query 122 IKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYPI 181 IKWWLLAIPHYLILA F S GWRV ++ H+ G+M PSL+VI+++ A +ALLFTGRYP Sbjct 123 IKWWLLAIPHYLILAAFFSGGWRVVMLGRHELGGVMLPSLVVIVVVSAAIALLFTGRYPD 182 Query 182 GLYNL 186 GLYNL Sbjct 183 GLYNL 187 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/122 (34%), Positives = 52/122 (43%), Gaps = 23/122 (18%) Query 6 YPVRVRGDLDPALSRWQWLVKW-FLAIPHYIVLFFLHVAAVVVTVIA------------- 51 YP + + L R L+KW LAIPHY++L V ++ Sbjct 104 YPADLDVEYPQRLHRGLVLIKWWLLAIPHYLILAAFFSGGWRVVMLGRHELGGVMLPSLV 163 Query 52 -------FFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYP 104 A+LFTGRYP L++ +GV RW RV YA L D YPPF L P Sbjct 164 VIVVVSAAIALLFTGRYPDGLYNLLIGVNRWSLRVQAYA--GLMRDEYPPFRLDMGPREP 221 Query 105 AD 106 D Sbjct 222 FD 223 >gi|118618366|ref|YP_906698.1| hypothetical protein MUL_2967 [Mycobacterium ulcerans Agy99] gi|118570476|gb|ABL05227.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=223 Score = 274 bits (700), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 140/185 (76%), Positives = 159/185 (86%), Gaps = 0/185 (0%) Query 2 QPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRY 61 QP AYPVRVRGD+DPALSRWQWL+KW LAIPHYIVL FL++ A V TVIAFFAIL TGRY Sbjct 3 QPTAYPVRVRGDIDPALSRWQWLIKWILAIPHYIVLVFLYLGAFVATVIAFFAILLTGRY 62 Query 62 PRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVL 121 PR LFDFNVGVMRWRWRVAFYAL+ LGTDRYPPFSL+ +YPADL+V+YP+RL RGLVL Sbjct 63 PRPLFDFNVGVMRWRWRVAFYALTVLGTDRYPPFSLRENPQYPADLDVEYPQRLHRGLVL 122 Query 122 IKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYPI 181 IKWWLLAIPHYLILA F S GWRV ++ H+ G+M PSL+VI+++ A +ALLFTGRY Sbjct 123 IKWWLLAIPHYLILAAFFSGGWRVVMLGRHELGGVMLPSLVVIVVVSAAIALLFTGRYSD 182 Query 182 GLYNL 186 GLYNL Sbjct 183 GLYNL 187 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/126 (31%), Positives = 52/126 (42%), Gaps = 23/126 (18%) Query 2 QPDAYPVRVRGDLDPALSRWQWLVKW-FLAIPHYIVLFFLHVAAVVVTVIA--------- 51 + YP + + L R L+KW LAIPHY++L V ++ Sbjct 100 ENPQYPADLDVEYPQRLHRGLVLIKWWLLAIPHYLILAAFFSGGWRVVMLGRHELGGVML 159 Query 52 -----------FFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTK 100 A+LFTGRY L++ +GV RW RV YA L D YPPF L Sbjct 160 PSLVVIVVVSAAIALLFTGRYSDGLYNLLIGVNRWSLRVHAYA--GLMRDEYPPFRLDMG 217 Query 101 AEYPAD 106 P + Sbjct 218 PREPFE 223 >gi|72163423|ref|YP_291080.1| transmembrane protein [Thermobifida fusca YX] gi|71917155|gb|AAZ57057.1| possible transmembrane protein [Thermobifida fusca YX] Length=263 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 119/195 (62%), Positives = 142/195 (73%), Gaps = 14/195 (7%) Query 6 YPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTL 65 YP+ V G LDP +SRW WLVKW LAIPHYIVLFFL +A V+TV+AFFAILFTGRYPR + Sbjct 22 YPLHVSGTLDPGVSRWLWLVKWLLAIPHYIVLFFLWIAFAVLTVVAFFAILFTGRYPRGI 81 Query 66 FDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWW 125 FDFNVGV+RW WRV FYA LGTDRYPPFSL +YPA L+V YP+RLSRGLVL+KWW Sbjct 82 FDFNVGVLRWSWRVTFYAYGVLGTDRYPPFSLSADVDYPAQLDVAYPQRLSRGLVLVKWW 141 Query 126 LLAIPHYLILAVFLSSGWRV-----FLIDPHDRV---------GIMWPSLLVILLLVAVV 171 LLAIPHYL+++ F S G+R + D V G PSL+ +L+L+A + Sbjct 142 LLAIPHYLVVSAFSSGGFRKSGGMDWFSDSTTTVSENGQWMMQGWFMPSLMSLLVLIAAL 201 Query 172 ALLFTGRYPIGLYNL 186 ALLFTG YP G++N Sbjct 202 ALLFTGGYPRGIFNF 216 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/58 (47%), Positives = 32/58 (56%), Gaps = 2/58 (3%) Query 57 FTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPER 114 FTG YPR +F+F +G+ RW RV YA AL TD+YPPF L P P R Sbjct 205 FTGGYPRGIFNFLLGLHRWALRVVAYA--ALMTDQYPPFRLDQGGPDPTSNTGPQPTR 260 >gi|111017087|ref|YP_700059.1| hypothetical protein RHA1_ro00065 [Rhodococcus jostii RHA1] gi|110816617|gb|ABG91901.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=494 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 114/187 (61%), Positives = 137/187 (74%), Gaps = 9/187 (4%) Query 6 YPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTL 65 YP R+ G+LD LSRW WLVKW LA+PHY VLFFL +A VV T+++ FAILFT RYPRTL Sbjct 253 YPARLVGELDAPLSRWLWLVKWLLALPHYFVLFFLGIAFVVTTLVSGFAILFTARYPRTL 312 Query 66 FDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWW 125 FDFNVGV+RW WRV FY SAL TDRYPPF+L + +YPAD +VDYP RLSRGLVL+KWW Sbjct 313 FDFNVGVLRWVWRVQFYTYSALATDRYPPFTLN-RTDYPADFDVDYPVRLSRGLVLVKWW 371 Query 126 LLAIPHYLILAVFLSSGW-----RVFLIDPHDRVGIMW--PSLLVILLLVAVVALLFTGR 178 LLAIPHYLILA+ L+ GW + G W S+L + + + +ALLFTGR Sbjct 372 LLAIPHYLILAL-LAGGWFGSWRAGVTVTDGTHYGQPWLLGSVLGLAVTFSAIALLFTGR 430 Query 179 YPIGLYN 185 YP GL++ Sbjct 431 YPHGLFD 437 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/128 (40%), Positives = 59/128 (47%), Gaps = 37/128 (28%) Query 6 YPVRVRGDLDPALSRWQWLVKW-FLAIPHYIVLFFLHV-------AAVVVT--------- 48 YPVR LSR LVKW LAIPHY++L L A V VT Sbjct 357 YPVR--------LSRGLVLVKWWLLAIPHYLILALLAGGWFGSWRAGVTVTDGTHYGQPW 408 Query 49 ----------VIAFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQ 98 + A+LFTGRYP LFDF +G+ RW +RVA YA L D YPPF L Sbjct 409 LLGSVLGLAVTFSAIALLFTGRYPHGLFDFVMGINRWAFRVAAYA--TLMRDEYPPFRLD 466 Query 99 TKAEYPAD 106 P + Sbjct 467 QGPCEPHE 474 >gi|220912823|ref|YP_002488132.1| hypothetical protein Achl_2070 [Arthrobacter chlorophenolicus A6] gi|219859701|gb|ACL40043.1| conserved hypothetical protein [Arthrobacter chlorophenolicus A6] Length=514 Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/187 (66%), Positives = 141/187 (76%), Gaps = 10/187 (5%) Query 6 YPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTL 65 YP R+ G+LDP LSR WLVKWFLAIPH++VL FL A V T++A FAILFTGRYPR L Sbjct 275 YPARLSGELDPGLSRGLWLVKWFLAIPHFVVLVFLWFAFAVTTIVAGFAILFTGRYPRAL 334 Query 66 FDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWW 125 F+FNVGVMRW WRVAFYA +A GTDRYPPF+L +YPAD +VDYPERLSRGLVL+KWW Sbjct 335 FNFNVGVMRWNWRVAFYAYAAAGTDRYPPFTL-AHTDYPADFDVDYPERLSRGLVLVKWW 393 Query 126 LLAIPHYLILAVFLSSG--WRVFLID---PHDR-VGIMWPSLLVILLLVAVVALLFTGRY 179 LLAIPH LI+A + WR D ++R GI SLL IL+LVAVVALLFTGRY Sbjct 394 LLAIPHLLIVAALAGTAWTWRAETTDLGTTYERSTGI---SLLGILVLVAVVALLFTGRY 450 Query 180 PIGLYNL 186 L++L Sbjct 451 LRPLFDL 457 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/138 (36%), Positives = 59/138 (43%), Gaps = 33/138 (23%) Query 6 YPVRVRGDLDPALSRWQWLVKW-FLAIPHYIVLFFLHVAA--------------VVVTVI 50 YP D LSR LVKW LAIPH +++ L A T I Sbjct 371 YPADFDVDYPERLSRGLVLVKWWLLAIPHLLIVAALAGTAWTWRAETTDLGTTYERSTGI 430 Query 51 AFFAIL---------FTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQT-- 99 + IL FTGRY R LFD +G+ RW +RV Y +AL D YPPF L Sbjct 431 SLLGILVLVAVVALLFTGRYLRPLFDLVMGINRWIYRVMAY--TALMRDEYPPFRLDQGP 488 Query 100 -----KAEYPADLEVDYP 112 +A PA E+ P Sbjct 489 GEAPPQAPQPAGQELPVP 506 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/90 (42%), Positives = 48/90 (54%), Gaps = 21/90 (23%) Query 96 SLQTKAEYPADLEVDYPERLSRGLVLIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVG 155 L +A YPA L + LSRGL L+KW+ LAIPH+++L VFL W F Sbjct 268 GLADRAPYPARLSGELDPGLSRGLWLVKWF-LAIPHFVVL-VFL---WFAF--------- 313 Query 156 IMWPSLLVILLLVAVVALLFTGRYPIGLYN 185 + +VA A+LFTGRYP L+N Sbjct 314 -------AVTTIVAGFAILFTGRYPRALFN 336 >gi|302553799|ref|ZP_07306141.1| transmembrane protein [Streptomyces viridochromogenes DSM 40736] gi|302471417|gb|EFL34510.1| transmembrane protein [Streptomyces viridochromogenes DSM 40736] Length=233 Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 113/181 (63%), Positives = 134/181 (75%), Gaps = 3/181 (1%) Query 5 AYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRT 64 A PVR+ +D LSRW WLVKW LAIPHYIVLFFL +A VVV+VIAFFAILFT +YPR+ Sbjct 6 ASPVRLEASVDARLSRWLWLVKWLLAIPHYIVLFFLWIAFVVVSVIAFFAILFTAQYPRS 65 Query 65 LFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKW 124 LFDFNVGV+RW WRV +YA +ALGTDRYPPF+L +YPA +V YPERLSRGLVL+KW Sbjct 66 LFDFNVGVLRWNWRVGYYAHTALGTDRYPPFTLADVPDYPARFDVAYPERLSRGLVLVKW 125 Query 125 WLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYPIGLY 184 WLLAIP Y+++ +FL GW + G L+ L LVAVV LLFT RYP L+ Sbjct 126 WLLAIPQYIVVGMFLGGGWGWGGEHGNSWRG---GGLIPFLSLVAVVILLFTARYPRHLF 182 Query 185 N 185 + Sbjct 183 D 183 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/131 (42%), Positives = 66/131 (51%), Gaps = 21/131 (16%) Query 3 PDAYPVRVRGDLDPALSRWQWLVKW-FLAIPHYIVL-FFLHVAAVV-------------- 46 PD YP R LSR LVKW LAIP YIV+ FL Sbjct 102 PD-YPARFDVAYPERLSRGLVLVKWWLLAIPQYIVVGMFLGGGWGWGGEHGNSWRGGGLI 160 Query 47 --VTVIAFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYP 104 ++++A +LFT RYPR LFDF +G+ RW RVA YA AL TD+YPPF L P Sbjct 161 PFLSLVAVVILLFTARYPRHLFDFLLGLARWCARVAAYA--ALMTDQYPPFRLDMGGREP 218 Query 105 ADLEVDYPERL 115 +D + P R+ Sbjct 219 SDQDPQRPRRV 229 Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust. Identities = 33/85 (39%), Positives = 44/85 (52%), Gaps = 21/85 (24%) Query 101 AEYPADLEVDYPERLSRGLVLIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPS 160 A P LE RLSR L L+K WLLAIPHY++L FL W F Sbjct 5 AASPVRLEASVDARLSRWLWLVK-WLLAIPHYIVL-FFL---WIAF-------------- 45 Query 161 LLVILLLVAVVALLFTGRYPIGLYN 185 V++ ++A A+LFT +YP L++ Sbjct 46 --VVVSVIAFFAILFTAQYPRSLFD 68 >gi|297197529|ref|ZP_06914926.1| transmembrane protein [Streptomyces sviceus ATCC 29083] gi|197715601|gb|EDY59635.1| transmembrane protein [Streptomyces sviceus ATCC 29083] Length=264 Score = 204 bits (520), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 104/180 (58%), Positives = 131/180 (73%), Gaps = 10/180 (5%) Query 7 PVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLF 66 PV+V ++ LSRW WLVKW LAIPHY+VLFFL +A VVTVIAFFAILFT RYPR LF Sbjct 54 PVQVNARIESPLSRWLWLVKWILAIPHYVVLFFLWIAFTVVTVIAFFAILFTERYPRALF 113 Query 67 DFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWWL 126 DFN+GV+RW WRV++Y+ ALGTDRYPPFSL + +YPA L++ YPE+LSRGLVL+KWWL Sbjct 114 DFNLGVLRWSWRVSYYSYDALGTDRYPPFSLGEEPDYPARLDIAYPEKLSRGLVLVKWWL 173 Query 127 LAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYPIGLYNL 186 LAIPHY+++ FL +G L+ +L ++A V L FT +YP L++L Sbjct 174 LAIPHYMVIGFFLGGA----------HLGWWSGGLIALLTVIAAVILAFTEKYPKDLFDL 223 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/119 (46%), Positives = 68/119 (58%), Gaps = 15/119 (12%) Query 2 QPDAYPVRVRGDLDPALSRWQWLVKW-FLAIPHYIVL-FFLHVAAV---------VVTVI 50 +PD YP R+ LSR LVKW LAIPHY+V+ FFL A + ++TVI Sbjct 147 EPD-YPARLDIAYPEKLSRGLVLVKWWLLAIPHYMVIGFFLGGAHLGWWSGGLIALLTVI 205 Query 51 AFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSL-QTKAEYPADLE 108 A + FT +YP+ LFD +G+ RW RV Y SAL TD+YPPF L Q +E A E Sbjct 206 AAVILAFTEKYPKDLFDLIIGLNRWVLRVTAY--SALMTDKYPPFRLDQGGSETTAPEE 262 >gi|290955005|ref|YP_003486187.1| protein [Streptomyces scabiei 87.22] gi|260644531|emb|CBG67616.1| putative integral membrane protein [Streptomyces scabiei 87.22] Length=205 Score = 201 bits (510), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 107/175 (62%), Positives = 124/175 (71%), Gaps = 14/175 (8%) Query 14 LDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLFDFNVGVM 73 DP LSRW WLVKW LAIPHY+VL FL VA VV V+AFFAILFTGRYPRTLFDF GV+ Sbjct 5 CDPQLSRWLWLVKWLLAIPHYVVLVFLWVAFTVVGVVAFFAILFTGRYPRTLFDFTTGVL 64 Query 74 RWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWWLLAIPHYL 133 RW WRVAFY ALGTDRYPPF+L +YPA L+V YPE+LSRGLVL+KWWLLAIP YL Sbjct 65 RWSWRVAFYTYGALGTDRYPPFTLAEVPDYPAHLDVAYPEQLSRGLVLVKWWLLAIPQYL 124 Query 134 ILAVFLSSGWRVFLIDPHDRVGIMWPS--LLVILLLVAVVALLFTGRYPIGLYNL 186 +L + + + W S L+ +L A VALLFTG YP G+++L Sbjct 125 VLGIIGGG------------IHVTWSSGGLIALLTFFAGVALLFTGVYPRGIFDL 167 Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/115 (45%), Positives = 63/115 (55%), Gaps = 14/115 (12%) Query 3 PDAYPVRVRGDLDPALSRWQWLVKW-FLAIPHYIVLFFL----HV---AAVVVTVIAFFA 54 PD YP + LSR LVKW LAIP Y+VL + HV + ++ ++ FFA Sbjct 92 PD-YPAHLDVAYPEQLSRGLVLVKWWLLAIPQYLVLGIIGGGIHVTWSSGGLIALLTFFA 150 Query 55 ---ILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPAD 106 +LFTG YPR +FD +G+ RW RVA YA AL TD YPPF L PA Sbjct 151 GVALLFTGVYPRGIFDLVIGLDRWVLRVAAYA--ALLTDVYPPFRLDQGGGEPAS 203 >gi|325963462|ref|YP_004241368.1| hypothetical protein Asphe3_20800 [Arthrobacter phenanthrenivorans Sphe3] gi|323469549|gb|ADX73234.1| hypothetical protein Asphe3_20800 [Arthrobacter phenanthrenivorans Sphe3] Length=522 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 97/138 (71%), Positives = 111/138 (81%), Gaps = 1/138 (0%) Query 6 YPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTL 65 YP R+ G+LDPALSR WLVKW LAIPH+IVL FL A +V T++A FAILFTGRYPR L Sbjct 281 YPARLSGELDPALSRAMWLVKWLLAIPHFIVLVFLWFAFIVATIVAGFAILFTGRYPRAL 340 Query 66 FDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWW 125 FDFNVGVMRW WRVAFYA +A GTD YPPF+L+ + YPAD EVDYPERLSRGLVL+KWW Sbjct 341 FDFNVGVMRWNWRVAFYAYAAAGTDLYPPFTLR-RTNYPADFEVDYPERLSRGLVLVKWW 399 Query 126 LLAIPHYLILAVFLSSGW 143 LL+ PH LI+A + W Sbjct 400 LLSFPHLLIVAALAGTTW 417 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/53 (53%), Positives = 34/53 (65%), Gaps = 3/53 (5%) Query 57 FTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSL-QTKAEYPADLE 108 FTGRY R LFD +G+ RW +RV Y +AL D YPPF L Q A++P LE Sbjct 452 FTGRYIRPLFDLILGINRWIYRVMTY--TALLRDEYPPFRLDQGPADHPRPLE 502 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/86 (40%), Positives = 47/86 (55%), Gaps = 21/86 (24%) Query 100 KAEYPADLEVDYPERLSRGLVLIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWP 159 +A YPA L + LSR + L+K WLLAIPH+++L VFL W F Sbjct 278 RAPYPARLSGELDPALSRAMWLVK-WLLAIPHFIVL-VFL---WFAF------------- 319 Query 160 SLLVILLLVAVVALLFTGRYPIGLYN 185 ++ +VA A+LFTGRYP L++ Sbjct 320 ---IVATIVAGFAILFTGRYPRALFD 342 >gi|284991951|ref|YP_003410505.1| transmembrane protein [Geodermatophilus obscurus DSM 43160] gi|284065196|gb|ADB76134.1| transmembrane protein [Geodermatophilus obscurus DSM 43160] Length=253 Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 119/185 (65%), Positives = 136/185 (74%), Gaps = 6/185 (3%) Query 6 YPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTL 65 YPVRV LDP+LSRW WLVKW L IPH +VLFFL VA VVVTVIAFFAILFTGRYPR+L Sbjct 8 YPVRVDAALDPSLSRWLWLVKWLLLIPHVVVLFFLWVAFVVVTVIAFFAILFTGRYPRSL 67 Query 66 FDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWW 125 FDFNVGVMRW WRV +Y ALGTDRYPPF+L +YPA L+V YPERLSRGL+ +K W Sbjct 68 FDFNVGVMRWSWRVHYYGYWALGTDRYPPFTLADVPDYPAHLDVTYPERLSRGLIFVK-W 126 Query 126 LLAIPHYLILAVFLSSGW-----RVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 180 LLAIPHYL+LAVF+ G D D SL+ +L+L+A + LLFTGRYP Sbjct 127 LLAIPHYLVLAVFVGGGLWLGTRAGDTNDAWDDAANAGISLVGLLVLIAAIVLLFTGRYP 186 Query 181 IGLYN 185 LY+ Sbjct 187 KPLYD 191 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/132 (38%), Positives = 61/132 (47%), Gaps = 28/132 (21%) Query 3 PDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAV----------------- 45 PD YP + LSR VKW LAIPHY+VL + Sbjct 103 PD-YPAHLDVTYPERLSRGLIFVKWLLAIPHYLVLAVFVGGGLWLGTRAGDTNDAWDDAA 161 Query 46 --------VVTVIAFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSL 97 ++ +IA +LFTGRYP+ L+DF +G+ RW RV YA AL TDRYPPF L Sbjct 162 NAGISLVGLLVLIAAIVLLFTGRYPKPLYDFVMGMDRWALRVGPYA--ALMTDRYPPFRL 219 Query 98 QTKAEYPADLEV 109 T P + Sbjct 220 DTGGTDPGTVSA 231 >gi|336118719|ref|YP_004573490.1| hypothetical protein MLP_30730 [Microlunatus phosphovorus NM-1] gi|334686502|dbj|BAK36087.1| hypothetical protein MLP_30730 [Microlunatus phosphovorus NM-1] Length=314 Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 108/187 (58%), Positives = 132/187 (71%), Gaps = 8/187 (4%) Query 5 AYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRT 64 YP R+ G LD +LSRW WLVKW L IPH IVL FL VA V T++A+FAIL T RYPR+ Sbjct 79 GYPARLTGHLDGSLSRWLWLVKWVLIIPHVIVLAFLFVAFAVTTLVAWFAILITARYPRS 138 Query 65 LFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKW 124 LF FNVGV+ W WRV FY+ SALGTD+YPPF+L + +YPAD +V+YPER SRGLVLIK Sbjct 139 LFSFNVGVLGWAWRVGFYSHSALGTDQYPPFTLD-RTDYPADFDVEYPERHSRGLVLIKS 197 Query 125 WLLAIPHYLILAVFLSSGW-----RVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRY 179 WLLAIP L++A+ + W F R+G + SLL IL+LVA V LLFT RY Sbjct 198 WLLAIPQLLVVALITGNSWYWVTAGEFGATDVRRIGGI--SLLGILILVAGVVLLFTRRY 255 Query 180 PIGLYNL 186 P +++L Sbjct 256 PATIFDL 262 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (43%), Positives = 34/59 (58%), Gaps = 2/59 (3%) Query 46 VVTVIAFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYP 104 ++ ++A +LFT RYP T+FD +G RW +RV Y AL D YPPF L + P Sbjct 240 ILILVAGVVLLFTRRYPATIFDLLMGANRWIYRVITYV--ALMRDEYPPFRLDQGPDEP 296 >gi|116672503|ref|YP_833436.1| hypothetical protein Arth_3961 [Arthrobacter sp. FB24] gi|116612612|gb|ABK05336.1| hypothetical protein Arth_3961 [Arthrobacter sp. FB24] Length=573 Score = 194 bits (494), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 94/136 (70%), Positives = 113/136 (84%), Gaps = 1/136 (0%) Query 6 YPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTL 65 YPVR+ G LDP LSR WL+KWFLAIPHYIVLFFL A V T+++ FAILFTGRYPR+L Sbjct 289 YPVRLNGYLDPGLSRGMWLIKWFLAIPHYIVLFFLWFAFFVTTIVSGFAILFTGRYPRSL 348 Query 66 FDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWW 125 F+FNVGV+RW WRVAFYA +A+GTDRYPPF+L + +YPAD +V+YPE LSRGLVL+KWW Sbjct 349 FNFNVGVLRWNWRVAFYAYAAIGTDRYPPFTL-ARTDYPADFDVEYPEHLSRGLVLVKWW 407 Query 126 LLAIPHYLILAVFLSS 141 LLA+P LI+A F + Sbjct 408 LLALPQLLIVAAFSGA 423 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/58 (49%), Positives = 35/58 (61%), Gaps = 2/58 (3%) Query 49 VIAFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPAD 106 ++A F++LFTGR+ R LFD +G+ RW RV Y AL D YPPF L PAD Sbjct 465 IVAGFSLLFTGRFGRRLFDLLIGLNRWTHRVIAYV--ALMRDEYPPFRLDMGPTDPAD 520 Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust. Identities = 37/101 (37%), Positives = 47/101 (47%), Gaps = 25/101 (24%) Query 85 SALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWWLLAIPHYLILAVFLSSGWR 144 + L TD P + YP L LSRG+ LIK W LAIPHY++L FL W Sbjct 275 TPLPTDPQP----SDTSRYPVRLNGYLDPGLSRGMWLIK-WFLAIPHYIVL-FFL---WF 325 Query 145 VFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYPIGLYN 185 F + +V+ A+LFTGRYP L+N Sbjct 326 AFF----------------VTTIVSGFAILFTGRYPRSLFN 350 >gi|312195220|ref|YP_004015281.1| transmembrane protein [Frankia sp. EuI1c] gi|311226556|gb|ADP79411.1| transmembrane protein [Frankia sp. EuI1c] Length=263 Score = 190 bits (482), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 108/189 (58%), Positives = 132/189 (70%), Gaps = 9/189 (4%) Query 5 AYPVRVRGDLDPA--LSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYP 62 +PVR+ + +P LSRW WLVKWFL IPH I+L FL +A ++TV+AFFAILFTGRYP Sbjct 21 GHPVRLDAEPEPDERLSRWLWLVKWFLIIPHSIILLFLWIAFFLLTVVAFFAILFTGRYP 80 Query 63 RTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLI 122 R +F FNVGV+RW WRV +YA ALGTD+YPPF+L +YP +V YPERLSRGLVL+ Sbjct 81 RGIFRFNVGVLRWTWRVRYYAYGALGTDQYPPFTLGDVPDYPIRFDVAYPERLSRGLVLV 140 Query 123 KWWLLAIPHYLILAVF-----LSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTG 177 KWWLLAIP YL++A+F G FL H G P L+ +L+ VA V LLF G Sbjct 141 KWWLLAIPQYLVVAIFAGFGDWGGGGHRFLHGDHGFGGP--PGLVGLLIAVAAVVLLFRG 198 Query 178 RYPIGLYNL 186 RYP LY+L Sbjct 199 RYPRPLYDL 207 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/123 (41%), Positives = 59/123 (48%), Gaps = 27/123 (21%) Query 3 PDAYPVRVRGDLDPALSRWQWLVKW-FLAIPHYIVLF--------------FLH------ 41 PD YP+R LSR LVKW LAIP Y+V+ FLH Sbjct 119 PD-YPIRFDVAYPERLSRGLVLVKWWLLAIPQYLVVAIFAGFGDWGGGGHRFLHGDHGFG 177 Query 42 -VAAVVVTVIAFFAI--LFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQ 98 +V +IA A+ LF GRYPR L+D +G+ RW RV YA AL TD YPPF L Sbjct 178 GPPGLVGLLIAVAAVVLLFRGRYPRPLYDLIIGLDRWTARVIAYA--ALMTDVYPPFRLD 235 Query 99 TKA 101 Sbjct 236 QGG 238 >gi|319948031|ref|ZP_08022207.1| hypothetical protein ES5_01839 [Dietzia cinnamea P4] gi|319438320|gb|EFV93264.1| hypothetical protein ES5_01839 [Dietzia cinnamea P4] Length=481 Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 101/181 (56%), Positives = 126/181 (70%), Gaps = 3/181 (1%) Query 7 PVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLF 66 P+R+ G DP LSR WLVKW AIPHY+VL L AA +VTV A +LFTGRYPR+ F Sbjct 260 PLRLTGHPDPGLSRALWLVKWVAAIPHYLVLAVLWSAACIVTVAAGVVVLFTGRYPRSWF 319 Query 67 DFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWWL 126 F G +RW WRV FYA + LGTDRYPPF+L +A+YPADL+V YP+RLSRGLVL+KWWL Sbjct 320 AFVEGTLRWHWRVGFYAYAVLGTDRYPPFTLG-RADYPADLDVVYPDRLSRGLVLVKWWL 378 Query 127 LAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWP-SLLVILLLVAVVALLFTGRYPIGLYN 185 L +PH I A ++ G + G+ W +LL +L+L+A + LLFTGRYP GL+ Sbjct 379 LVLPHLFITA-LITGGGVALATASRNGDGVSWSFTLLGLLVLIAAIGLLFTGRYPQGLFA 437 Query 186 L 186 L Sbjct 438 L 438 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/120 (39%), Positives = 57/120 (48%), Gaps = 29/120 (24%) Query 18 LSRWQWLVKW-FLAIPHYIVLFFLHVAAVVVTV--------------------IAFFAIL 56 LSR LVKW L +PH + + V + IA +L Sbjct 367 LSRGLVLVKWWLLVLPHLFITALITGGGVALATASRNGDGVSWSFTLLGLLVLIAAIGLL 426 Query 57 FTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLS 116 FTGRYP+ LF NVG+ RW +RVA Y+L L D YPPF L AE PA P+R+S Sbjct 427 FTGRYPQGLFALNVGLNRWVYRVASYSL--LLRDEYPPFRLDQGAEEPA------PDRIS 478 >gi|326332434|ref|ZP_08198710.1| hypothetical protein NBCG_03880 [Nocardioidaceae bacterium Broad-1] gi|325949747|gb|EGD41811.1| hypothetical protein NBCG_03880 [Nocardioidaceae bacterium Broad-1] Length=250 Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 100/186 (54%), Positives = 126/186 (68%), Gaps = 0/186 (0%) Query 1 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 60 M PV + G LD +SR WLVKW L IPHYI+L FL VA V++V+A+FAILFTGR Sbjct 1 MNSTESPVVLEGHLDTRVSRALWLVKWLLLIPHYIILLFLWVAFTVLSVVAWFAILFTGR 60 Query 61 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 120 YPR +FDFN+GV+RW WRV FY +ALGTD YPPF+L A+YPA L + YPERLSRGLV Sbjct 61 YPRAIFDFNLGVLRWTWRVDFYGYAALGTDAYPPFTLDDVADYPARLHIAYPERLSRGLV 120 Query 121 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 180 L+K WLLAIPH L+L+ F+ G ++ +L+L A VA+LF YP Sbjct 121 LVKSWLLAIPHLLVLSFFVGGGLYATQTGNDPETWTWGSGIVGLLVLFAGVAMLFGRGYP 180 Query 181 IGLYNL 186 G+++L Sbjct 181 RGIFDL 186 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/121 (38%), Positives = 53/121 (44%), Gaps = 23/121 (19%) Query 6 YPVRVRGDLDPALSRWQWLVK-WFLAIPHYIVLFFLHVAAVVVT---------------- 48 YP R+ LSR LVK W LAIPH +VL F + T Sbjct 103 YPARLHIAYPERLSRGLVLVKSWLLAIPHLLVLSFFVGGGLYATQTGNDPETWTWGSGIV 162 Query 49 ----VIAFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYP 104 + A A+LF YPR +FD +G+ RW RVA Y L TD YPPF L P Sbjct 163 GLLVLFAGVAMLFGRGYPRGIFDLVLGLDRWVARVAAYVF--LMTDTYPPFRLDQGGTDP 220 Query 105 A 105 A Sbjct 221 A 221 >gi|284992599|ref|YP_003411153.1| transmembrane protein [Geodermatophilus obscurus DSM 43160] gi|284065844|gb|ADB76782.1| transmembrane protein [Geodermatophilus obscurus DSM 43160] Length=255 Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 106/187 (57%), Positives = 132/187 (71%), Gaps = 9/187 (4%) Query 6 YPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTL 65 YPVRV P++SR WLVKW L +PHY+VL FL +A +VV+ +AFFAILFT RYPR L Sbjct 8 YPVRVDASQTPSVSRGLWLVKWLLLVPHYVVLAFLWLAFLVVSAVAFFAILFTARYPRPL 67 Query 66 FDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWW 125 FDFNVGV+RW WRV +Y ALGTDRYPPF+L +YPA L++ YP+RLSRGLVL+KWW Sbjct 68 FDFNVGVLRWSWRVHYYGYGALGTDRYPPFTLAEVPDYPAHLDIAYPQRLSRGLVLVKWW 127 Query 126 LLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWP-------SLLVILLLVAVVALLFTGR 178 LLAIPHYL+L+VF G ++L W SL+ +L+ +A + LLFTGR Sbjct 128 LLAIPHYLVLSVFTGGG--IWLGTRSGTPDSAWDDGWGAGVSLVALLVFIAAIVLLFTGR 185 Query 179 YPIGLYN 185 YP LY+ Sbjct 186 YPRPLYD 192 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 50/132 (38%), Positives = 60/132 (46%), Gaps = 36/132 (27%) Query 5 AYPVRVRGDLDPALSRWQWLVKW-FLAIPHYIVLFFLHVAAV------------------ 45 AYP R LSR LVKW LAIPHY+VL + Sbjct 112 AYPQR--------LSRGLVLVKWWLLAIPHYLVLSVFTGGGIWLGTRSGTPDSAWDDGWG 163 Query 46 -------VVTVIAFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQ 98 ++ IA +LFTGRYPR L+DF +G+ RW RV YA AL TDRYPPF L Sbjct 164 AGVSLVALLVFIAAIVLLFTGRYPRPLYDFVLGMDRWALRVTAYA--ALMTDRYPPFRLD 221 Query 99 TKAEYPADLEVD 110 P + + Sbjct 222 QGGTDPGSVPTE 233 >gi|62511916|gb|AAX84521.1| hypothetical protein [uncultured bacterium] Length=639 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 115/186 (62%), Positives = 129/186 (70%), Gaps = 3/186 (1%) Query 3 PDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYP 62 P PVR+ G LD LSRW WLVKW L IPH IVL L A VV TV A FAILFTGRYP Sbjct 384 PPVSPVRLTGFLDAGLSRWLWLVKWLLVIPHLIVLAVLWFALVVTTVAAGFAILFTGRYP 443 Query 63 RTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLI 122 + F F+VGV+RW WRVAFY+ SALGTDRYPPF+L +A++PA LEV YPERLSRGLVL+ Sbjct 444 PSWFSFSVGVLRWSWRVAFYSYSALGTDRYPPFTL-ARADHPAQLEVAYPERLSRGLVLV 502 Query 123 KWWLLAIPHYLILAVFLSSG-WRVFLIDPHDRVGIMW-PSLLVILLLVAVVALLFTGRYP 180 KWWLLAIPH LI+ V G W W PSLL +L+LVA V LLFTGRY Sbjct 503 KWWLLAIPHLLIVGVLTGGGTWSTTRSGDDGTTTTSWGPSLLGLLVLVAAVVLLFTGRYR 562 Query 181 IGLYNL 186 L+ L Sbjct 563 PELFAL 568 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 41/123 (34%), Positives = 48/123 (40%), Gaps = 33/123 (26%) Query 5 AYPVRVRGDLDPALSRWQWLVKW-FLAIPHYIVLFFLHVAAVVVTVIA------------ 51 AYP R LSR LVKW LAIPH +++ L T + Sbjct 490 AYPER--------LSRGLVLVKWWLLAIPHLLIVGVLTGGGTWSTTRSGDDGTTTTSWGP 541 Query 52 ----------FFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKA 101 +LFTGRY LF +G+ RW RV Y L L D YPPF L Sbjct 542 SLLGLLVLVAAVVLLFTGRYRPELFALVMGINRWVNRVLAYVL--LLRDEYPPFRLDQGP 599 Query 102 EYP 104 P Sbjct 600 VEP 602 >gi|331696113|ref|YP_004332352.1| hypothetical protein Psed_2286 [Pseudonocardia dioxanivorans CB1190] gi|326950802|gb|AEA24499.1| hypothetical protein Psed_2286 [Pseudonocardia dioxanivorans CB1190] Length=516 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/185 (53%), Positives = 129/185 (70%), Gaps = 1/185 (0%) Query 1 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 60 M PV + G LDP LSRW WLVKWFL IPH IVL L +A VV++++A A++ +GR Sbjct 1 MSNSHQPVHISGRLDPGLSRWTWLVKWFLLIPHLIVLAVLWIALVVLSIVALVAVVVSGR 60 Query 61 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 120 YP LF FN GV+RW WRVAFY + GTDRYPPF+L +YPA L+++ PERLSR Sbjct 61 YPSALFGFNAGVLRWSWRVAFYGYALGGTDRYPPFTLSDVPDYPARLDIERPERLSRPKA 120 Query 121 LIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 180 L+KWWLLAIPHYL++ + + +G R + G+ L+ +L+L+A+VALLFTGRYP Sbjct 121 LVKWWLLAIPHYLVVVLLVGAG-RWEAPGTNVTTGVFGLGLIGVLVLIALVALLFTGRYP 179 Query 181 IGLYN 185 G+++ Sbjct 180 AGIFD 184 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/144 (39%), Positives = 67/144 (47%), Gaps = 31/144 (21%) Query 3 PDAYPVRVRGDLDPALSRWQWLVKW-FLAIPHYIVLFFL------HVAAVVVTVIAFFAI 55 PD YP R+ + LSR + LVKW LAIPHY+V+ L VT F Sbjct 101 PD-YPARLDIERPERLSRPKALVKWWLLAIPHYLVVVLLVGAGRWEAPGTNVTTGVFGLG 159 Query 56 L-------------FTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAE 102 L FTGRYP +FD +G+ RW RVA YAL L TD YPPF L + Sbjct 160 LIGVLVLIALVALLFTGRYPAGIFDAVMGMNRWVLRVAAYAL--LMTDVYPPFRLDQGGD 217 Query 103 YPADLEVDY--------PERLSRG 118 P ++ D PER S G Sbjct 218 DPPAVDDDRTGRRVAAGPERRSGG 241 >gi|302557019|ref|ZP_07309361.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] gi|302474637|gb|EFL37730.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] Length=256 Score = 177 bits (449), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 105/181 (59%), Positives = 125/181 (70%), Gaps = 10/181 (5%) Query 6 YPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTL 65 +P RV LD LSRW WLVKW LA+PHY+VL FL VA VV+V+AFFA+LFTGRYPR L Sbjct 48 HPARVTAVLDAPLSRWLWLVKWLLALPHYVVLAFLWVAFAVVSVVAFFAVLFTGRYPRPL 107 Query 66 FDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWW 125 FDF GV+RW WRVA+YA LGTDRYPPF+L YPA E+ YPE LSRGLVL+KWW Sbjct 108 FDFATGVLRWNWRVAYYAYGTLGTDRYPPFTLADVPGYPARFELAYPEELSRGLVLVKWW 167 Query 126 LLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYPIGLYN 185 LLA+PHYL+L F+ R+ L+ +L L A VAL TGRYP G+++ Sbjct 168 LLAVPHYLLLGFFVGGA----------RLAWFSGGLIGLLALFAGVALAVTGRYPRGVFD 217 Query 186 L 186 L Sbjct 218 L 218 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/112 (42%), Positives = 57/112 (51%), Gaps = 13/112 (11%) Query 5 AYPVRVRGDLDPALSRWQWLVKW-FLAIPHYIVLFFLHVAA-------VVVTVIAFFA-- 54 YP R LSR LVKW LA+PHY++L F A ++ ++A FA Sbjct 144 GYPARFELAYPEELSRGLVLVKWWLLAVPHYLLLGFFVGGARLAWFSGGLIGLLALFAGV 203 Query 55 -ILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPA 105 + TGRYPR +FD G+ RW RVA YA AL TD YPPF L P Sbjct 204 ALAVTGRYPRGVFDLVTGLNRWVLRVAAYA--ALLTDVYPPFRLDQGGREPG 253 >gi|158318666|ref|YP_001511174.1| putative transmembrane protein [Frankia sp. EAN1pec] gi|158114071|gb|ABW16268.1| putative transmembrane protein [Frankia sp. EAN1pec] Length=232 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 93/142 (66%), Positives = 109/142 (77%), Gaps = 1/142 (0%) Query 1 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGR 60 M YP++V LD LSRW WLVKWFLAIPHY+VLFFL VA VV+T +A AILFTGR Sbjct 1 MNDRPYPIKVNARLDEPLSRWLWLVKWFLAIPHYVVLFFLWVAFVVLTAVAGVAILFTGR 60 Query 61 YPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLV 120 YPR +FDFN GV+RW WRV++Y+ SAL TDRYPPFSL + YPA L + YP +LSRGLV Sbjct 61 YPRAIFDFNTGVLRWSWRVSYYSYSALATDRYPPFSLGEEPGYPAHLTIPYPAQLSRGLV 120 Query 121 LIKWWLLAIPHYLILAVFLSSG 142 L+KWWLL IPHYL++ FL G Sbjct 121 LVKWWLLLIPHYLVVG-FLVGG 141 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/101 (34%), Positives = 43/101 (43%), Gaps = 21/101 (20%) Query 31 IPHYIVLFFLHVAAVVVTVIAFF------------------AILFTGRYPRTLFDFNVGV 72 IPHY+V+ FL V ++ A + G YPR L+D VG+ Sbjct 129 IPHYLVVGFL-VGGTTLSHNALLTAGTGGGLIGLLALIAAITLAVAGTYPRALYDLVVGL 187 Query 73 MRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPE 113 RW RV YA AL TD YPPF L + P + P Sbjct 188 NRWVIRVGVYA--ALMTDEYPPFRLDSGGAEPEPQDQPAPN 226 >gi|343925678|ref|ZP_08765195.1| hypothetical protein GOALK_048_00830 [Gordonia alkanivorans NBRC 16433] gi|343764468|dbj|GAA12121.1| hypothetical protein GOALK_048_00830 [Gordonia alkanivorans NBRC 16433] Length=233 Score = 167 bits (422), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 95/138 (69%), Positives = 111/138 (81%), Gaps = 2/138 (1%) Query 6 YPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTL 65 + V + G LD LSRW WL+KW LAIPH++VL L +A TV+A FAILFTGRYPR L Sbjct 2 HAVTLTGHLDEPLSRWLWLLKWLLAIPHFLVLVVLDIAFFFGTVVAGFAILFTGRYPRGL 61 Query 66 FDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWW 125 FDFNVGV+RW WRVAFY SAL TDRYPPF+L+ + +YPAD +V YPERLSRGLVL+KWW Sbjct 62 FDFNVGVIRWNWRVAFYTHSALATDRYPPFALR-RTDYPADFDVVYPERLSRGLVLVKWW 120 Query 126 LLAIPHYLILAVFLSSGW 143 LLAIPHYL+LAV L+ GW Sbjct 121 LLAIPHYLVLAV-LAGGW 137 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/113 (39%), Positives = 55/113 (49%), Gaps = 27/113 (23%) Query 18 LSRWQWLVKW-FLAIPHYIVLFFLHVAAVVVTVIAFFA---------------------- 54 LSR LVKW LAIPHY+VL L + + +A Sbjct 110 LSRGLVLVKWWLLAIPHYLVLAVLAGGWLGGPLAVGYAAQGDDDRVTIAPVLAFVVFFAA 169 Query 55 --ILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPA 105 +LFTG YPR LFDF +G+ RW++RV +A +AL D YPPF L + P Sbjct 170 VALLFTGTYPRGLFDFAMGINRWQYRV--WAYAALMCDEYPPFRLDQGGDEPT 220 >gi|291300933|ref|YP_003512211.1| hypothetical protein Snas_3454 [Stackebrandtia nassauensis DSM 44728] gi|290570153|gb|ADD43118.1| hypothetical protein Snas_3454 [Stackebrandtia nassauensis DSM 44728] Length=224 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/170 (50%), Positives = 113/170 (67%), Gaps = 1/170 (0%) Query 17 ALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLFDFNVGVMRWR 76 +LSRW WLVKW L IPHY+VL FL A VV+T++A+ A+L TG YPR +FDFNVGV+RW Sbjct 15 SLSRWLWLVKWILLIPHYLVLLFLWTAFVVLTIVAYVAVLITGVYPRWIFDFNVGVLRWH 74 Query 77 WRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWWLLAIPHYLILA 136 WRV +Y +ALGTDRYPPF+L YPA L++ PER++R L+ WLLAIPH ++L Sbjct 75 WRVNYYGYAALGTDRYPPFTLADDPSYPARLDIARPERIARWRPLVH-WLLAIPHLVLLN 133 Query 137 VFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYPIGLYNL 186 F+++ P ++ +L +L+ LLFTGR GLY+L Sbjct 134 AFVAAPVWGDYDAPTRERAVVSIGVLGAAVLILGFGLLFTGRRLSGLYDL 183 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/128 (36%), Positives = 62/128 (49%), Gaps = 23/128 (17%) Query 5 AYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAV------------VVTV--- 49 +YP R+ ++RW+ LV W LAIPH ++L A V VV++ Sbjct 100 SYPARLDIARPERIARWRPLVHWLLAIPHLVLLNAFVAAPVWGDYDAPTRERAVVSIGVL 159 Query 50 -----IAFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYP 104 I F +LFTGR L+D +G+ RW +RV Y AL TD YPPF L + + P Sbjct 160 GAAVLILGFGLLFTGRRLSGLYDLLLGLARWGYRVLAYV--ALMTDVYPPFRLD-QGDAP 216 Query 105 ADLEVDYP 112 +E P Sbjct 217 TIVEHHGP 224 >gi|240167764|ref|ZP_04746423.1| hypothetical protein MkanA1_00510 [Mycobacterium kansasii ATCC 12478] Length=197 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/181 (50%), Positives = 111/181 (62%), Gaps = 22/181 (12%) Query 7 PVRVRGDLDPALSRWQWLVKWF-LAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTL 65 PV VRG +D A SRW WL KW LA+PHY VL L+V V+TV+A AILFTGRYPR + Sbjct 6 PVLVRGAID-APSRWLWLFKWCVLAVPHYPVLILLYVVYPVLTVVAGVAILFTGRYPRPI 64 Query 66 FDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWW 125 FDFNVGV+RW WRV Y TDRYPPF+L + YP DLEV YP+RL + VL+KWW Sbjct 65 FDFNVGVLRWSWRVMNYRFPMNSTDRYPPFTLAPRPGYPGDLEVSYPQRLGKTRVLVKWW 124 Query 126 LLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYPIGLYN 185 LL +P L+ + ++P LL L +V+ V LL TG G+++ Sbjct 125 LLGLPQILL----------CWAMEP----------LLQALCVVSAVWLLCTGVTHRGMFD 164 Query 186 L 186 L Sbjct 165 L 165 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/99 (32%), Positives = 49/99 (50%), Gaps = 3/99 (3%) Query 5 AYPVRVRGDLDPALSRWQWLVKW-FLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPR 63 YP + L + + LVKW L +P ++ + + + V++ +L TG R Sbjct 101 GYPGDLEVSYPQRLGKTRVLVKWWLLGLPQILLCWAMEPLLQALCVVSAVWLLCTGVTHR 160 Query 64 TLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAE 102 +FD +G++RWR+RVA Y +L D YPPF L Sbjct 161 GMFDLLMGIVRWRYRVAVYV--SLMRDEYPPFRLDQGGS 197 >gi|254822311|ref|ZP_05227312.1| hypothetical protein MintA_20419 [Mycobacterium intracellulare ATCC 13950] Length=197 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/187 (50%), Positives = 112/187 (60%), Gaps = 23/187 (12%) Query 1 MQPDAYPVRVRGDLDPALSRWQWLVKWF-LAIPHYIVLFFLHVAAVVVTVIAFFAILFTG 59 M A VRVRGDLD A SRW WLVKW LA+PHY +L L++ TV A AIL TG Sbjct 1 MNSPADSVRVRGDLD-APSRWLWLVKWCVLAVPHYPILILLYLIYPFSTVAAGVAILCTG 59 Query 60 RYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGL 119 RYPR LF FNVGV+RW WR+ Y TDRYPPF+L ++ +YP DL VDYPERL Sbjct 60 RYPRPLFAFNVGVLRWSWRLMNYRFPMNSTDRYPPFTLASRPDYPGDLAVDYPERLKNWA 119 Query 120 VLIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRY 179 VL+K WLLAIP L+ W + + L +L ++A +ALLFTG Sbjct 120 VLVK-WLLAIPQVLLC-------WSM-------------EAPLQVLCVIAALALLFTGTI 158 Query 180 PIGLYNL 186 P G ++L Sbjct 159 PRGAFDL 165 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/101 (43%), Positives = 57/101 (57%), Gaps = 3/101 (2%) Query 2 QPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRY 61 +PD YP + D L W LVKW LAIP ++ + + V+ VIA A+LFTG Sbjct 100 RPD-YPGDLAVDYPERLKNWAVLVKWLLAIPQVLLCWSMEAPLQVLCVIAALALLFTGTI 158 Query 62 PRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAE 102 PR FD +G++RWR+RVA Y +L D YPPF + A Sbjct 159 PRGAFDLLMGMVRWRYRVAVYV--SLMRDEYPPFRMDLGAR 197 >gi|342861837|ref|ZP_08718482.1| hypothetical protein MCOL_23225 [Mycobacterium colombiense CECT 3035] gi|342130654|gb|EGT83958.1| hypothetical protein MCOL_23225 [Mycobacterium colombiense CECT 3035] Length=197 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/180 (50%), Positives = 111/180 (62%), Gaps = 23/180 (12%) Query 8 VRVRGDLDPALSRWQWLVKWF-LAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLF 66 V VRGD D A SRW WLVKW LA+PHY +L L++A TV A AIL TGRYPR LF Sbjct 8 VTVRGDFD-APSRWLWLVKWCVLALPHYPILIALYLAYPFSTVAAGVAILCTGRYPRPLF 66 Query 67 DFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWWL 126 DFNVGV+RW WRV Y TD+YPPF+L ++ +YP DL V+YPERL VL+K WL Sbjct 67 DFNVGVLRWSWRVMNYRFPMNSTDKYPPFTLASRPDYPGDLAVEYPERLKNWAVLVK-WL 125 Query 127 LAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYPIGLYNL 186 LAIP L+ W + +LL +L ++A +ALL TG P G+++L Sbjct 126 LAIPQVLLC-------WSM-------------EALLQVLCVIAALALLCTGTIPRGIFDL 165 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/97 (42%), Positives = 56/97 (58%), Gaps = 3/97 (3%) Query 2 QPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRY 61 +PD YP + + L W LVKW LAIP ++ + + V+ VIA A+L TG Sbjct 100 RPD-YPGDLAVEYPERLKNWAVLVKWLLAIPQVLLCWSMEALLQVLCVIAALALLCTGTI 158 Query 62 PRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQ 98 PR +FD +G++RWR+RVA Y +L D YPPF + Sbjct 159 PRGIFDLLMGMVRWRYRVAAYV--SLMRDEYPPFRMD 193 >gi|325001692|ref|ZP_08122804.1| integral membrane protein [Pseudonocardia sp. P1] Length=232 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/138 (60%), Positives = 99/138 (72%), Gaps = 0/138 (0%) Query 5 AYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRT 64 PVR++ LDP LSRW WLVKW L +PH +VL L A V+T+ AF AIL TGRYPR Sbjct 14 GSPVRLQARLDPVLSRWLWLVKWLLLVPHIVVLAVLGAAVWVLTIAAFLAILVTGRYPRV 73 Query 65 LFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKW 124 LF FN+GV+RW WRVA+Y LGTDRYP F+L + PA L+V YP LSRGLVL+KW Sbjct 74 LFGFNLGVIRWWWRVAWYGYGGLGTDRYPRFALDDSPDDPARLDVAYPGSLSRGLVLVKW 133 Query 125 WLLAIPHYLILAVFLSSG 142 WLLA+PHY +LA + +G Sbjct 134 WLLALPHYAVLAFLVGAG 151 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/102 (40%), Positives = 48/102 (48%), Gaps = 15/102 (14%) Query 17 ALSRWQWLVKW-FLAIPHYIVLFFLHVAA------------VVVTVIAFFAILFTGRYPR 63 +LSR LVKW LA+PHY VL FL A ++ + +LFTG YP Sbjct 123 SLSRGLVLVKWWLLALPHYAVLAFLVGAGGTGLARAGGGLLSLLVLFVAVLLLFTGGYPA 182 Query 64 TLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPA 105 LF G+ RW RV YA L TD YPP + PA Sbjct 183 GLFGLVTGIDRWVLRVVAYA--GLMTDAYPPMRMDQGGTDPA 222 >gi|41410302|ref|NP_963138.1| hypothetical protein MAP4204 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41399136|gb|AAS06754.1| hypothetical protein MAP_4204 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336460624|gb|EGO39515.1| hypothetical protein MAPs_38260 [Mycobacterium avium subsp. paratuberculosis S397] Length=197 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/136 (57%), Positives = 89/136 (66%), Gaps = 3/136 (2%) Query 1 MQPDAYPVRVRGDLDPALSRWQWLVKWF-LAIPHYIVLFFLHVAAVVVTVIAFFAILFTG 59 M VRVRGD D A SRW WLVKW LA+PHY +L L++ + V+A AI+ TG Sbjct 1 MNGPGESVRVRGDFD-APSRWLWLVKWCVLAVPHYPILIGLYLVYPLCIVVAGIAIVCTG 59 Query 60 RYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGL 119 RYPR LFDFNVGV+RW WR+ Y TDRYPPF+L +YP DL VDYP RL R Sbjct 60 RYPRRLFDFNVGVLRWSWRLMNYRFPMNSTDRYPPFTLAASPDYPGDLAVDYPRRLKRLA 119 Query 120 VLIKWWLLAIPHYLIL 135 V IK WLLAIPH L+ Sbjct 120 VPIK-WLLAIPHVLVC 134 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/101 (37%), Positives = 53/101 (53%), Gaps = 3/101 (2%) Query 2 QPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRY 61 PD YP + D L R +KW LAIPH +V + + V+ + A +L TG Sbjct 100 SPD-YPGDLAVDYPRRLKRLAVPIKWLLAIPHVLVCWSMEPLLQVLCLTAALTLLCTGTV 158 Query 62 PRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAE 102 P +FD +G++RWR+RVA Y +L D YPPF + + Sbjct 159 PPGMFDLLMGIVRWRYRVAVYV--SLMRDEYPPFRMDLGSR 197 >gi|118464204|ref|YP_883563.1| hypothetical protein MAV_4428 [Mycobacterium avium 104] gi|254776863|ref|ZP_05218379.1| hypothetical protein MaviaA2_19651 [Mycobacterium avium subsp. avium ATCC 25291] gi|118165491|gb|ABK66388.1| conserved hypothetical protein [Mycobacterium avium 104] Length=188 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/127 (59%), Positives = 88/127 (70%), Gaps = 3/127 (2%) Query 10 VRGDLDPALSRWQWLVKWF-LAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLFDF 68 +RGD D A SRW WLVKW LA+PHY +L L++ + TV+A AI+ TGRYPR LFDF Sbjct 1 MRGDFD-APSRWLWLVKWCVLAVPHYPILIGLYLVYPLCTVVAGIAIICTGRYPRRLFDF 59 Query 69 NVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWWLLA 128 NVGV+RW WR+ Y TDRYPPF+L T +YP DL VDYP RL R V +K WLLA Sbjct 60 NVGVLRWSWRLMNYRFPMNSTDRYPPFTLATSPDYPGDLAVDYPRRLKRLAVPVK-WLLA 118 Query 129 IPHYLIL 135 IPH L+ Sbjct 119 IPHVLVC 125 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/101 (39%), Positives = 53/101 (53%), Gaps = 3/101 (2%) Query 2 QPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRY 61 PD YP + D L R VKW LAIPH +V + + V+ + A +L TG Sbjct 91 SPD-YPGDLAVDYPRRLKRLAVPVKWLLAIPHVLVCWSMEPLLQVLCLTAALTLLCTGTV 149 Query 62 PRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAE 102 P +FD +GV+RWR+RVA Y +L D YPPF + + Sbjct 150 PPGMFDLLMGVVRWRYRVAVYV--SLMRDEYPPFRMDLGSR 188 >gi|298251313|ref|ZP_06975116.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963] gi|297545905|gb|EFH79773.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963] Length=107 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/94 (63%), Positives = 70/94 (75%), Gaps = 6/94 (6%) Query 5 AYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRT 64 AYP D + L+RW LVKWFLAIPHY++LFFL++A VVV +IA+FAILFTG YPR Sbjct 19 AYP-----DAERELNRWLPLVKWFLAIPHYVMLFFLNIALVVVVIIAWFAILFTGHYPRR 73 Query 65 LFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQ 98 +FDF GV+RW RVA YAL L TD+YPPF L Sbjct 74 MFDFVEGVIRWNSRVAAYAL-VLVTDQYPPFRLS 106 Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust. Identities = 33/99 (34%), Positives = 50/99 (51%), Gaps = 28/99 (28%) Query 90 DRYPPFSLQTKAEYPADLEVDYPE---RLSRGLVLIKWWLLAIPHYLILAVFLSSGWRVF 146 DRYP T L+ YP+ L+R L L+KW+L AIPHY++L FL+ Sbjct 3 DRYP----STTDHQSVHLDYAYPDAERELNRWLPLVKWFL-AIPHYVML-FFLNIA---- 52 Query 147 LIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYPIGLYN 185 LV+++++A A+LFTG YP +++ Sbjct 53 ---------------LVVVVIIAWFAILFTGHYPRRMFD 76 >gi|270308772|ref|YP_003330830.1| hypothetical protein DhcVS_1403 [Dehalococcoides sp. VS] gi|270154664|gb|ACZ62502.1| hypothetical protein DhcVS_1403 [Dehalococcoides sp. VS] Length=210 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 54/87 (63%), Positives = 67/87 (78%), Gaps = 1/87 (1%) Query 13 DLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLFDFNVGV 72 D+ L+RW L KWFLAIPHYI+LFFL +AA + TV A+F ILFTG+YP++LFDF VGV Sbjct 125 DVKNNLNRWMPLFKWFLAIPHYIILFFLGLAAFMCTVFAWFTILFTGKYPKSLFDFVVGV 184 Query 73 MRWRWRVAFYALSALGTDRYPPFSLQT 99 MRW RV+ YA + L TD YP FSL++ Sbjct 185 MRWGLRVSAYA-TLLITDDYPLFSLES 210 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/146 (33%), Positives = 70/146 (48%), Gaps = 30/146 (20%) Query 43 AAVVVTVIAFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAE 102 A ++ + F IL +YP+ FD+N+ + R+ +R F + AL D YP T E Sbjct 61 AGGIIVMATVFMILVQQKYPKWWFDWNLALSRFCYR--FISYLALLRDEYP----STDEE 114 Query 103 YPADLEVDYPE---RLSRGLVLIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWP 159 L + YP+ L+R + L KW+ LAIPHY+IL FL G F+ Sbjct 115 QSVHLNLVYPDVKNNLNRWMPLFKWF-LAIPHYIIL-FFL--GLAAFMCT---------- 160 Query 160 SLLVILLLVAVVALLFTGRYPIGLYN 185 + A +LFTG+YP L++ Sbjct 161 -------VFAWFTILFTGKYPKSLFD 179 >gi|258651837|ref|YP_003200993.1| hypothetical protein Namu_1612 [Nakamurella multipartita DSM 44233] gi|258555062|gb|ACV78004.1| hypothetical protein Namu_1612 [Nakamurella multipartita DSM 44233] Length=218 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/86 (66%), Positives = 64/86 (75%), Gaps = 1/86 (1%) Query 13 DLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLFDFNVGV 72 D++ L+RW LVKWFL IPH IVLFFL + A +IA+FAILFTGRYPR LFDF VGV Sbjct 134 DVEKQLNRWLPLVKWFLVIPHLIVLFFLFIGAAFAVIIAWFAILFTGRYPRGLFDFVVGV 193 Query 73 MRWRWRVAFYALSALGTDRYPPFSLQ 98 RW RV+ YA + L TDRYPPFSL Sbjct 194 GRWALRVSAYA-TLLLTDRYPPFSLH 218 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/136 (39%), Positives = 73/136 (54%), Gaps = 32/136 (23%) Query 55 ILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPE- 113 ILF RYPR FDF + R+ RVA Y AL TDRYP T E L++DYP+ Sbjct 82 ILFRRRYPRWWFDFALQFNRFTARVAAYG--ALLTDRYP----STVEEQAIHLDLDYPDV 135 Query 114 --RLSRGLVLIKWWLLAIPHYLIL-AVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAV 170 +L+R L L+KW+L+ IPH ++L +F+ + + V ++A Sbjct 136 EKQLNRWLPLVKWFLV-IPHLIVLFFLFIGAAFAV---------------------IIAW 173 Query 171 VALLFTGRYPIGLYNL 186 A+LFTGRYP GL++ Sbjct 174 FAILFTGRYPRGLFDF 189 >gi|289569967|ref|ZP_06450194.1| transmembrane protein [Mycobacterium tuberculosis T17] gi|289543721|gb|EFD47369.1| transmembrane protein [Mycobacterium tuberculosis T17] Length=154 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 49/49 (100%), Positives = 49/49 (100%), Gaps = 0/49 (0%) Query 1 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTV 49 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTV Sbjct 106 MQPDAYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTV 154 >gi|73749299|ref|YP_308538.1| hypothetical protein cbdb_A1599 [Dehalococcoides sp. CBDB1] gi|289433260|ref|YP_003463133.1| hypothetical protein DehalGT_1322 [Dehalococcoides sp. GT] gi|73661015|emb|CAI83622.1| hypothetical membrane protein [Dehalococcoides sp. CBDB1] gi|288946980|gb|ADC74677.1| conserved hypothetical protein [Dehalococcoides sp. GT] Length=211 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 50/86 (59%), Positives = 65/86 (76%), Gaps = 1/86 (1%) Query 13 DLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLFDFNVGV 72 ++ L+RW L KWFLAIPHYI+L FL AA + T+ A+F I+FTG+YP++LFDF VGV Sbjct 126 NVKTDLNRWMPLFKWFLAIPHYILLAFLGFAAFICTIFAWFTIVFTGKYPKSLFDFVVGV 185 Query 73 MRWRWRVAFYALSALGTDRYPPFSLQ 98 +RW RV+ Y+ S L TD YPPFSL+ Sbjct 186 LRWGLRVSAYS-SLLITDIYPPFSLE 210 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/146 (31%), Positives = 68/146 (47%), Gaps = 30/146 (20%) Query 43 AAVVVTVIAFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAE 102 A ++ + ILF RYP+ FD+N+ + R+ +R F + L D YP T E Sbjct 62 AGGIIILATVLMILFQQRYPKWWFDWNLALSRFSYR--FISYLTLLRDEYP----STDEE 115 Query 103 YPADLEVDYPE---RLSRGLVLIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWP 159 L + YP L+R + L KW+ LAIPHY++LA G+ F Sbjct 116 QSVHLNLVYPNVKTDLNRWMPLFKWF-LAIPHYILLAFL---GFAAF------------- 158 Query 160 SLLVILLLVAVVALLFTGRYPIGLYN 185 I + A ++FTG+YP L++ Sbjct 159 ----ICTIFAWFTIVFTGKYPKSLFD 180 >gi|86740640|ref|YP_481040.1| hypothetical protein Francci3_1936 [Frankia sp. CcI3] gi|86567502|gb|ABD11311.1| conserved hypothetical membrane protein [Frankia sp. CcI3] Length=212 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/81 (60%), Positives = 59/81 (73%), Gaps = 1/81 (1%) Query 18 LSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLFDFNVGVMRWRW 77 L+RW LVKW LA+PHYI LFFL++A V ++ +FA+L TGR PR LFDF VGV+RW Sbjct 132 LNRWLPLVKWLLAVPHYIALFFLYIATVAAMIVGWFAVLLTGRLPRGLFDFVVGVLRWTN 191 Query 78 RVAFYALSALGTDRYPPFSLQ 98 RV YA+ L TD YPPF L+ Sbjct 192 RVVCYAV-ILTTDDYPPFRLR 211 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/133 (36%), Positives = 64/133 (49%), Gaps = 29/133 (21%) Query 55 ILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYPE- 113 ILF RYPR FD+NV ++ + RV Y L D YP T+ E L + YP+ Sbjct 76 ILFRQRYPRWWFDWNVALLSFTNRVVAYL--TLLRDEYP----STEDEQAVHLTIPYPDA 129 Query 114 -RLSRGLVLIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVA 172 RL+R L L+K WLLA+PHY+ L + V ++V A Sbjct 130 ARLNRWLPLVK-WLLAVPHYIALFFLYIA--------------------TVAAMIVGWFA 168 Query 173 LLFTGRYPIGLYN 185 +L TGR P GL++ Sbjct 169 VLLTGRLPRGLFD 181 >gi|258653849|ref|YP_003203005.1| hypothetical protein Namu_3712 [Nakamurella multipartita DSM 44233] gi|258557074|gb|ACV80016.1| hypothetical protein Namu_3712 [Nakamurella multipartita DSM 44233] Length=174 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/81 (61%), Positives = 58/81 (72%), Gaps = 2/81 (2%) Query 18 LSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLFDFNVGVMRWRW 77 LSRWQ LVKW LA+PHY+VLF L +AA+ V V F A+L TG YP++L DF V V R+ Sbjct 94 LSRWQPLVKWLLAVPHYLVLFGLSIAAIAVLVAGFLAVLITGEYPQSLRDFLVAVYRYSV 153 Query 78 RVAFYALSALGTDRYPPFSLQ 98 RV Y + L TDRYPPFSLQ Sbjct 154 RVQAY--TGLLTDRYPPFSLQ 172 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/167 (41%), Positives = 89/167 (54%), Gaps = 30/167 (17%) Query 25 VKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYAL 84 ++W LAIPH + + L V V+T++AF +L T R PR LFD R+ WR YAL Sbjct 1 MQWLLAIPHLFIAYALTVVRAVLTLVAFVTVLGTRRIPRPLFDAIAMTFRYEWRTVSYAL 60 Query 85 SALGTDRYPPFSLQ-TKAEYPAD----LEVDYPERLSRGLVLIKWWLLAIPHYLILAVFL 139 L +D YPPF Q T A+ AD + YPE+LSR L+K WLLA+PHYL+L Sbjct 61 F-LRSD-YPPFDFQPTAADDGADPPTLVTFTYPEQLSRWQPLVK-WLLAVPHYLVL---- 113 Query 140 SSGWRVFLIDPHDRVGIMWPSLLVILLLVA-VVALLFTGRYPIGLYN 185 G+ S+ I +LVA +A+L TG YP L + Sbjct 114 --------------FGL---SIAAIAVLVAGFLAVLITGEYPQSLRD 143 >gi|313675782|ref|YP_004053778.1| transmembrane protein [Marivirga tractuosa DSM 4126] gi|312942480|gb|ADR21670.1| putative transmembrane protein [Marivirga tractuosa DSM 4126] Length=198 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 58/157 (37%), Positives = 87/157 (56%), Gaps = 27/157 (17%) Query 28 FLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSAL 87 ++ IPH +LFF+ + ++ I+FF +LFTGRYP + F+F V ++RW+ R+ + Sbjct 27 YIQIPHLFLLFFVGLWGAILRFISFFIVLFTGRYPESFFEFQVQLIRWQTRLNARIFNL- 85 Query 88 GTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWWL----LAIPHYLILAVFLSSGW 143 D YPPF L K EY A ++V YPER+SRGLVL++ + + IPH +L L Sbjct 86 -ADDYPPFGLDAKDEYIA-VDVKYPERISRGLVLLRAFFGIIYVLIPHAFVLFFRL---- 139 Query 144 RVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYP 180 +W +LVI +A +LFTG +P Sbjct 140 -------------IWCQILVI---IAWWVVLFTGEFP 160 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/75 (39%), Positives = 47/75 (63%), Gaps = 2/75 (2%) Query 28 FLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSAL 87 ++ IPH VLFF + ++ +IA++ +LFTG +P++ +F VG +RW+ RV Y Sbjct 126 YVLIPHAFVLFFRLIWCQILVIIAWWVVLFTGEFPKSWHEFIVGTLRWQTRVNLYMWYM- 184 Query 88 GTDRYPPFSLQTKAE 102 TD YPPF+ + A+ Sbjct 185 -TDEYPPFTGKPLAQ 198 >gi|119713503|gb|ABL97556.1| hypothetical protein MBMO_EB0-35D03.0019 [uncultured marine bacterium EB0_35D03] Length=190 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 47/93 (51%), Positives = 57/93 (62%), Gaps = 6/93 (6%) Query 6 YPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTL 65 YP V+ DL RW LVKW L IPH IVL L + + T A FAIL TG+YP+ + Sbjct 103 YPA-VKNDL----KRWMPLVKWILVIPHIIVLIVLFIGVIFSTFFALFAILLTGKYPQEI 157 Query 66 FDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQ 98 F+F G +RW RV+ YAL L TD YPPF L+ Sbjct 158 FNFVEGFLRWTLRVSAYAL-LLTTDEYPPFRLK 189 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/183 (28%), Positives = 88/183 (49%), Gaps = 30/183 (16%) Query 6 YPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTL 65 YPV+++ D + +R L + L IP I+L + A ++ ILF +YP+ Sbjct 4 YPVKLQIDYLESSNRLTALFRLILVIPIVIILGLISTYAEALSFAIAMMILFKQKYPKFW 63 Query 66 FDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYP---ERLSRGLVLI 122 F++N+G+ ++ +R+A Y L D YP T + + V YP L R + L+ Sbjct 64 FEWNIGITKFAYRIAAYLF--LMRDEYP----STDQDQSVQITVPYPAVKNDLKRWMPLV 117 Query 123 KWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLLVILLLVAVVALLFTGRYPIG 182 K W+L IPH ++L V +G+++ + A+ A+L TG+YP Sbjct 118 K-WILVIPHIIVLIVLF--------------IGVIFSTFF------ALFAILLTGKYPQE 156 Query 183 LYN 185 ++N Sbjct 157 IFN 159 >gi|256396611|ref|YP_003118175.1| hypothetical protein Caci_7509 [Catenulispora acidiphila DSM 44928] gi|256362837|gb|ACU76334.1| hypothetical protein Caci_7509 [Catenulispora acidiphila DSM 44928] Length=336 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/118 (39%), Positives = 68/118 (58%), Gaps = 3/118 (2%) Query 20 RWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLFDFNVGVMRWRWRV 79 RW L++ LAIP IVL+ L VA V ++ +FA LFTGR P + DF +GV++++ RV Sbjct 99 RWTVLIRLILAIPQLIVLYLLLVAGFFVLIVGWFAALFTGRLPAGIRDFLIGVLKYQIRV 158 Query 80 AFYALSALGTDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWWLLAIPHYLILAV 137 Y L D YPPF+ YP +EV P RL+ V + L+ +P +++ +V Sbjct 159 HGYLF--LLVDEYPPFAFFEAPGYPIQIEVPEPTRLNPAAVFFRIILM-VPGWIVTSV 213 >gi|284046009|ref|YP_003396349.1| hypothetical protein Cwoe_4561 [Conexibacter woesei DSM 14684] gi|283950230|gb|ADB52974.1| hypothetical protein Cwoe_4561 [Conexibacter woesei DSM 14684] Length=214 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/107 (41%), Positives = 57/107 (54%), Gaps = 2/107 (1%) Query 6 YPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTL 65 YPV D SR + L IP IV F + A++ VIA+FAI+FTGRYP+ L Sbjct 2 YPVGYEADFVEERSRLTTFFRLILVIPWLIVSIFWGIGALICAVIAWFAIVFTGRYPQGL 61 Query 66 FDFNVGVMRWRWRVAFYALSALGTDRYPPFSLQTKAEYPADLEVDYP 112 +DF +R+ RV Y L L TD +P F + +YP L +D P Sbjct 62 YDFVAKALRFITRVNGYML--LMTDEFPSFGGDEEPQYPVRLRIDEP 106 Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/97 (38%), Positives = 52/97 (54%), Gaps = 5/97 (5%) Query 2 QPDAYPVRVRGDLDP--ALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTG 59 + YPVR+R D +P A SR + ++ L IP IVL+F+ + A + V+++ I+ G Sbjct 93 EEPQYPVRLRID-EPLSAYSRVKTGFRFILMIPIVIVLYFVQIVARAIGVLSWIVIVIMG 151 Query 60 RYPRTLFDFNVGVMRWRWRVAFYALSALGTDRYPPFS 96 R P LFD + R Y L L T+ YPPFS Sbjct 152 RQPEALFDIMKWTQAYEARANAYHL--LVTETYPPFS 186 Score = 35.4 bits (80), Expect = 3.5, Method: Compositional matrix adjust. Identities = 26/84 (31%), Positives = 38/84 (46%), Gaps = 21/84 (25%) Query 103 YPADLEVDYPERLSRGLVLIKWWLLAIPHYLILAVFLSSGWRVFLIDPHDRVGIMWPSLL 162 YP E D+ E SR L++ +R+ L+ P V I W Sbjct 2 YPVGYEADFVEERSR---------------------LTTFFRLILVIPWLIVSIFWGIGA 40 Query 163 VILLLVAVVALLFTGRYPIGLYNL 186 +I ++A A++FTGRYP GLY+ Sbjct 41 LICAVIAWFAIVFTGRYPQGLYDF 64 >gi|291450043|ref|ZP_06589433.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291352992|gb|EFE79894.1| conserved hypothetical protein [Streptomyces albus J1074] Length=264 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/115 (46%), Positives = 66/115 (58%), Gaps = 6/115 (5%) Query 29 LAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALG 88 L +PH++VLFFLH+AA T +FA L T R P L+ F G + W RV A+ L Sbjct 23 LLVPHFVVLFFLHIAAWFATTATWFAALATARVPDPLYRFLAGYLGWATRVDAEAM--LL 80 Query 89 TDRYPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWWLLAIPHYLILAVFLSSGW 143 DRYPPF+L YP +EV +RL+R VL + LL IP LI+ SSGW Sbjct 81 VDRYPPFALHAPG-YPVRVEVTG-DRLNRLAVLFRLILL-IPA-LIVQALASSGW 131 Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust. Identities = 44/145 (31%), Positives = 65/145 (45%), Gaps = 11/145 (7%) Query 5 AYPVRVRGDLDPALSRWQWLVKWFLAIPHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRT 64 YPVRV D L+R L + L IP IV + +I + +L GR P+ Sbjct 93 GYPVRVEVTGD-RLNRLAVLFRLILLIPALIVQALASSGWWALGLIWWLIVLVMGRVPQP 151 Query 65 LFDFNVGVMRWRWRVAFYALSALGTDRYP-------PFSLQTKAEYPADLEVDYPERLSR 117 LF+ + V+R+R R YA+ + T YP P +L T AE ++ E L Sbjct 152 LFEASAAVLRFRMRTGAYAM--MLTPAYPKGFFGDRPGALGTDAEEAEEVG-RVTENLGA 208 Query 118 GLVLIKWWLLAIPHYLILAVFLSSG 142 + +L P ++L VFL +G Sbjct 209 SGSATRPLVLGTPATVLLVVFLLAG 233 >gi|182440643|ref|YP_001828362.1| hypothetical protein SGR_6850 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469159|dbj|BAG23679.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length=262 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/114 (44%), Positives = 68/114 (60%), Gaps = 9/114 (7%) Query 32 PHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDR 91 PH+IVLF LH+AA V+ +FA L GR P +F F GV+ + RV+ A L DR Sbjct 44 PHFIVLFVLHIAAFFTVVVGWFAALVLGRLPDPVFRFLTGVLGYDMRVS--ASDMLLIDR 101 Query 92 YPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWWLLAIPHYLI--LAVFLSSGW 143 YPPF+L A+YP +EV P L+R VL + +L+ IP ++ LAV+ GW Sbjct 102 YPPFALTPPADYPVQIEV-RPTPLNRLAVLFRLFLM-IPAAIVQSLAVY---GW 150 >gi|326781318|ref|ZP_08240583.1| hypothetical protein SACT1_7210 [Streptomyces cf. griseus XylebKG-1] gi|326661651|gb|EGE46497.1| hypothetical protein SACT1_7210 [Streptomyces griseus XylebKG-1] Length=262 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/114 (44%), Positives = 68/114 (60%), Gaps = 9/114 (7%) Query 32 PHYIVLFFLHVAAVVVTVIAFFAILFTGRYPRTLFDFNVGVMRWRWRVAFYALSALGTDR 91 PH+IVLF LH+AA V+ +FA L GR P +F F GV+ + RV+ A L DR Sbjct 44 PHFIVLFVLHIAAFFTVVVGWFAALVLGRLPDPVFRFLTGVLGYDMRVS--ASDMLLIDR 101 Query 92 YPPFSLQTKAEYPADLEVDYPERLSRGLVLIKWWLLAIPHYLI--LAVFLSSGW 143 YPPF+L A+YP +EV P L+R VL + +L+ IP ++ LAV+ GW Sbjct 102 YPPFALTPPADYPVQIEV-RPTPLNRLAVLFRLFLM-IPAAIVQSLAVY---GW 150 Lambda K H 0.333 0.147 0.502 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 177363380150 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40