BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1891 Length=135 Score E Sequences producing significant alignments: (Bits) Value gi|254364713|ref|ZP_04980759.1| conserved hypothetical protein [... 271 3e-71 gi|15609028|ref|NP_216407.1| hypothetical protein Rv1891 [Mycoba... 270 4e-71 gi|289745677|ref|ZP_06505055.1| conserved hypothetical protein [... 269 1e-70 gi|15828095|ref|NP_302358.1| hypothetical protein [Mycobacterium... 216 7e-55 gi|254822528|ref|ZP_05227529.1| hypothetical protein MintA_21544... 216 9e-55 gi|240170538|ref|ZP_04749197.1| hypothetical protein MkanA1_1459... 214 3e-54 gi|296164912|ref|ZP_06847468.1| conserved hypothetical protein [... 208 2e-52 gi|342859540|ref|ZP_08716193.1| hypothetical protein MCOL_11693 ... 203 8e-51 gi|183982790|ref|YP_001851081.1| hypothetical protein MMAR_2784 ... 202 2e-50 gi|118616859|ref|YP_905191.1| hypothetical protein MUL_1140 [Myc... 199 9e-50 gi|41407713|ref|NP_960549.1| hypothetical protein MAP1615 [Mycob... 197 4e-49 gi|145224485|ref|YP_001135163.1| hypothetical protein Mflv_3904 ... 151 3e-35 gi|108799856|ref|YP_640053.1| hypothetical protein Mmcs_2890 [My... 151 3e-35 gi|118472096|ref|YP_887989.1| hypothetical protein MSMEG_3686 [M... 150 4e-35 gi|315444816|ref|YP_004077695.1| hypothetical protein Mspyr1_324... 149 1e-34 gi|333990616|ref|YP_004523230.1| hypothetical protein JDM601_197... 143 7e-33 gi|120403492|ref|YP_953321.1| hypothetical protein Mvan_2504 [My... 127 4e-28 gi|289750472|ref|ZP_06509850.1| conserved hypothetical protein [... 119 2e-25 gi|120406526|ref|YP_956355.1| hypothetical protein Mvan_5584 [My... 62.8 1e-08 gi|317506862|ref|ZP_07964634.1| excalibur calcium-binding domain... 55.8 2e-06 gi|118469495|ref|YP_885654.1| hypothetical protein MSMEG_1263 [M... 49.7 1e-04 gi|118472699|ref|YP_889040.1| hypothetical protein MSMEG_4783 [M... 47.4 7e-04 gi|145221816|ref|YP_001132494.1| hypothetical protein Mflv_1224 ... 43.9 0.009 gi|111020181|ref|YP_703153.1| hypothetical protein RHA1_ro03192 ... 43.1 0.012 gi|108797262|ref|YP_637459.1| hypothetical protein Mmcs_0282 [My... 42.7 0.019 gi|126437900|ref|YP_001073591.1| hypothetical protein Mjls_5337 ... 42.4 0.026 gi|108801919|ref|YP_642116.1| hypothetical protein Mmcs_4956 [My... 42.4 0.026 gi|240173060|ref|ZP_04751718.1| hypothetical protein MkanA1_2735... 40.8 0.060 gi|183984669|ref|YP_001852960.1| hypothetical protein MMAR_4701 ... 40.8 0.073 gi|41406867|ref|NP_959703.1| hypothetical protein MAP0769 [Mycob... 38.1 0.43 gi|145223102|ref|YP_001133780.1| hypothetical protein Mflv_2515 ... 38.1 0.45 gi|344281967|ref|XP_003412747.1| PREDICTED: protocadherin-11 X-l... 38.1 0.46 gi|344281961|ref|XP_003412744.1| PREDICTED: protocadherin-11 X-l... 38.1 0.46 gi|344281965|ref|XP_003412746.1| PREDICTED: protocadherin-11 X-l... 38.1 0.46 gi|344281963|ref|XP_003412745.1| PREDICTED: protocadherin-11 X-l... 38.1 0.46 gi|344281959|ref|XP_003412743.1| PREDICTED: protocadherin-11 X-l... 38.1 0.47 gi|118470485|ref|YP_887182.1| hypothetical protein MSMEG_2862 [M... 37.7 0.52 gi|333992106|ref|YP_004524720.1| hypothetical protein JDM601_346... 37.4 0.79 gi|254818337|ref|ZP_05223338.1| hypothetical protein MintA_00335... 37.0 0.91 gi|342860441|ref|ZP_08717092.1| hypothetical protein MCOL_16241 ... 37.0 1.0 gi|120405097|ref|YP_954926.1| hypothetical protein Mvan_4143 [My... 36.2 1.7 gi|145225109|ref|YP_001135787.1| hypothetical protein Mflv_4531 ... 35.8 2.1 gi|47227297|emb|CAF96846.1| unnamed protein product [Tetraodon n... 34.7 5.3 gi|120403841|ref|YP_953670.1| hypothetical protein Mvan_2858 [My... 33.9 8.9 >gi|254364713|ref|ZP_04980759.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|134150227|gb|EBA42272.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] Length=142 Score = 271 bits (692), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 135/135 (100%), Positives = 135/135 (100%), Gaps = 0/135 (0%) Query 1 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG 60 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG Sbjct 8 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG 67 Query 61 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGW 120 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGW Sbjct 68 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGW 127 Query 121 QPGWFTGAGFFPPEP 135 QPGWFTGAGFFPPEP Sbjct 128 QPGWFTGAGFFPPEP 142 >gi|15609028|ref|NP_216407.1| hypothetical protein Rv1891 [Mycobacterium tuberculosis H37Rv] gi|15841361|ref|NP_336398.1| hypothetical protein MT1941 [Mycobacterium tuberculosis CDC1551] gi|31793083|ref|NP_855576.1| hypothetical protein Mb1924 [Mycobacterium bovis AF2122/97] 74 more sequence titles Length=135 Score = 270 bits (691), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 135/135 (100%), Positives = 135/135 (100%), Gaps = 0/135 (0%) Query 1 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG 60 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG Sbjct 1 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG 60 Query 61 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGW 120 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGW Sbjct 61 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGW 120 Query 121 QPGWFTGAGFFPPEP 135 QPGWFTGAGFFPPEP Sbjct 121 QPGWFTGAGFFPPEP 135 >gi|289745677|ref|ZP_06505055.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289686205|gb|EFD53693.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] Length=135 Score = 269 bits (687), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 134/135 (99%), Positives = 135/135 (100%), Gaps = 0/135 (0%) Query 1 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG 60 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG Sbjct 1 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG 60 Query 61 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGW 120 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLP+LCLGARGW Sbjct 61 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPILCLGARGW 120 Query 121 QPGWFTGAGFFPPEP 135 QPGWFTGAGFFPPEP Sbjct 121 QPGWFTGAGFFPPEP 135 >gi|15828095|ref|NP_302358.1| hypothetical protein [Mycobacterium leprae TN] gi|221230572|ref|YP_002503988.1| putative secreted protein [Mycobacterium leprae Br4923] gi|4582349|emb|CAB40291.1| hypothetical protein MLCB561.09 [Mycobacterium leprae] gi|13093649|emb|CAC30978.1| putative secreted protein [Mycobacterium leprae] gi|219933679|emb|CAR72120.1| putative secreted protein [Mycobacterium leprae Br4923] Length=134 Score = 216 bits (551), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 106/133 (80%), Positives = 113/133 (85%), Gaps = 1/133 (0%) Query 1 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG 60 MIREL+ +AI A+ AP A A+P YDGDVPGM+YDASL APC SWER+IFGRGPSG Sbjct 1 MIRELLAISAIASGAVNSAPRAAANPH-YDGDVPGMSYDASLSAPCFSWERYIFGRGPSG 59 Query 61 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGW 120 QAEACHFPPPNQFPPA TGYWVISYPLYGVQQ GAPCPK QAAAQS DGLPMLCLG +GW Sbjct 60 QAEACHFPPPNQFPPANTGYWVISYPLYGVQQAGAPCPKTQAAAQSADGLPMLCLGGQGW 119 Query 121 QPGWFTGAGFFPP 133 QPGWFT GFFPP Sbjct 120 QPGWFTDKGFFPP 132 >gi|254822528|ref|ZP_05227529.1| hypothetical protein MintA_21544 [Mycobacterium intracellulare ATCC 13950] Length=134 Score = 216 bits (550), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 107/134 (80%), Positives = 114/134 (86%), Gaps = 1/134 (0%) Query 1 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG 60 MIREL++ A+I G IG AP A ADP YDGDVPGMNY ASLGAPC ++ERFIFGRGPSG Sbjct 1 MIRELLSAASIAGITIGMAPCAAADP-HYDGDVPGMNYQASLGAPCDNYERFIFGRGPSG 59 Query 61 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGW 120 QAEACHFPPPNQFP A TGYWV SYPLYGVQQ GA CP QAAAQ+PDGLPMLCLG +GW Sbjct 60 QAEACHFPPPNQFPAATTGYWVASYPLYGVQQTGAKCPGSQAAAQTPDGLPMLCLGEQGW 119 Query 121 QPGWFTGAGFFPPE 134 QPGWFTGAGFFPP Sbjct 120 QPGWFTGAGFFPPS 133 >gi|240170538|ref|ZP_04749197.1| hypothetical protein MkanA1_14590 [Mycobacterium kansasii ATCC 12478] Length=135 Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 117/134 (88%), Positives = 123/134 (92%), Gaps = 0/134 (0%) Query 1 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG 60 MIREL+TTAAI GAAIG APVAGAD RY+GDVPGMNYDASLGAPC ++ERFIFGRG SG Sbjct 1 MIRELLTTAAIAGAAIGTAPVAGADNGRYEGDVPGMNYDASLGAPCDNYERFIFGRGTSG 60 Query 61 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGW 120 QAEACHFPPPNQFP A TGYWVISYPLYGVQQ GAPCP PQAAAQ+PDGLPMLCLGA+GW Sbjct 61 QAEACHFPPPNQFPAATTGYWVISYPLYGVQQAGAPCPGPQAAAQTPDGLPMLCLGAQGW 120 Query 121 QPGWFTGAGFFPPE 134 Q GWFTGAGFFPPE Sbjct 121 QAGWFTGAGFFPPE 134 >gi|296164912|ref|ZP_06847468.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899754|gb|EFG79204.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=132 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 103/133 (78%), Positives = 112/133 (85%), Gaps = 3/133 (2%) Query 1 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG 60 MIREL++ A++ G A+G AP A A YDGDVPGMNY ASLGAPC ++ERFIFGRGPSG Sbjct 1 MIRELLSAASVAGMAVGLAPSAAAG---YDGDVPGMNYQASLGAPCDNYERFIFGRGPSG 57 Query 61 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGW 120 QAEACHFPPPNQFP A TGYWV+SYPLYGVQQ GA CP PQ+AAQS GLPMLCLG RGW Sbjct 58 QAEACHFPPPNQFPAATTGYWVMSYPLYGVQQAGAKCPGPQSAAQSDRGLPMLCLGERGW 117 Query 121 QPGWFTGAGFFPP 133 Q GWFTGAGFFPP Sbjct 118 QEGWFTGAGFFPP 130 >gi|342859540|ref|ZP_08716193.1| hypothetical protein MCOL_11693 [Mycobacterium colombiense CECT 3035] gi|342132672|gb|EGT85892.1| hypothetical protein MCOL_11693 [Mycobacterium colombiense CECT 3035] Length=132 Score = 203 bits (516), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 104/134 (78%), Positives = 110/134 (83%), Gaps = 3/134 (2%) Query 1 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG 60 MIREL++ A+I G IG AP A A YDGDVPGMNY ASLGAPC ++E FIFGRGPSG Sbjct 1 MIRELLSAASIAGITIGLAPCAAAG---YDGDVPGMNYQASLGAPCDNYESFIFGRGPSG 57 Query 61 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGW 120 QAEACHFPPPNQFP A TGYWV SYPLYGVQQ GA CP PQAAAQS GLPMLCLGA+GW Sbjct 58 QAEACHFPPPNQFPAATTGYWVASYPLYGVQQPGAKCPGPQAAAQSDRGLPMLCLGAQGW 117 Query 121 QPGWFTGAGFFPPE 134 Q GWFTGAGFFPP Sbjct 118 QEGWFTGAGFFPPS 131 >gi|183982790|ref|YP_001851081.1| hypothetical protein MMAR_2784 [Mycobacterium marinum M] gi|183176116|gb|ACC41226.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=134 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 109/134 (82%), Positives = 116/134 (87%), Gaps = 0/134 (0%) Query 1 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG 60 MIREL+ AAITGAAIG APVA AD Y+GDVPGMNYDASLGAPC ++ERFIFGRG SG Sbjct 1 MIRELLAAAAITGAAIGVAPVAVADQPHYEGDVPGMNYDASLGAPCDNYERFIFGRGTSG 60 Query 61 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGW 120 QAEACHFPPPNQFP A TGYWVISYPLYGVQQ GA CP P +AAQ+ DGLPMLC GA+GW Sbjct 61 QAEACHFPPPNQFPAATTGYWVISYPLYGVQQAGASCPGPNSAAQTEDGLPMLCRGAQGW 120 Query 121 QPGWFTGAGFFPPE 134 Q GWFTGAGFFPPE Sbjct 121 QAGWFTGAGFFPPE 134 >gi|118616859|ref|YP_905191.1| hypothetical protein MUL_1140 [Mycobacterium ulcerans Agy99] gi|118568969|gb|ABL03720.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=137 Score = 199 bits (507), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 107/134 (80%), Positives = 114/134 (86%), Gaps = 0/134 (0%) Query 1 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG 60 MIREL+ AAITGAAIG APVA AD Y+GDVPGMNYDASLGAPC ++ERFIFGRG SG Sbjct 1 MIRELLAAAAITGAAIGVAPVAVADQPHYEGDVPGMNYDASLGAPCDNYERFIFGRGTSG 60 Query 61 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGW 120 QAEACHFPPPNQFP TGYWVISYPLYGVQQ GA CP P +AAQ+ DGLPMLC GA+GW Sbjct 61 QAEACHFPPPNQFPATTTGYWVISYPLYGVQQTGASCPGPNSAAQTEDGLPMLCRGAQGW 120 Query 121 QPGWFTGAGFFPPE 134 Q GWFTGAGFFPP Sbjct 121 QAGWFTGAGFFPPR 134 >gi|41407713|ref|NP_960549.1| hypothetical protein MAP1615 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118463365|ref|YP_881997.1| hypothetical protein MAV_2810 [Mycobacterium avium 104] gi|254775290|ref|ZP_05216806.1| hypothetical protein MaviaA2_11551 [Mycobacterium avium subsp. avium ATCC 25291] gi|41396066|gb|AAS03932.1| hypothetical protein MAP_1615 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118164652|gb|ABK65549.1| conserved hypothetical protein [Mycobacterium avium 104] gi|336457552|gb|EGO36558.1| hypothetical protein MAPs_22240 [Mycobacterium avium subsp. paratuberculosis S397] Length=132 Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 102/134 (77%), Positives = 108/134 (81%), Gaps = 3/134 (2%) Query 1 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG 60 MIREL+T A++ G A VA YDGDVPGMNY ASLGAPC ++ERFIFGRGPSG Sbjct 1 MIRELLTAASVAGIA---VGVAPVAAAGYDGDVPGMNYQASLGAPCDNYERFIFGRGPSG 57 Query 61 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGW 120 QAEACHFPPPNQFP A TGYWV+SYPLYGVQQ GA CP PQAAAQS GLPMLCLG RGW Sbjct 58 QAEACHFPPPNQFPAATTGYWVMSYPLYGVQQAGAKCPGPQAAAQSEAGLPMLCLGDRGW 117 Query 121 QPGWFTGAGFFPPE 134 Q GWFTGAGFFPP Sbjct 118 QEGWFTGAGFFPPS 131 >gi|145224485|ref|YP_001135163.1| hypothetical protein Mflv_3904 [Mycobacterium gilvum PYR-GCK] gi|145216971|gb|ABP46375.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=139 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 79/140 (57%), Positives = 100/140 (72%), Gaps = 10/140 (7%) Query 1 MIRELVTTAAITGAAIGGAPVAGA--------DPQRYDGDVPGMNYDASLGAPCSSWERF 52 MIR+++ +A+ GAA+ APVA A DP RY DVPGMNYDA L PC++ +RF Sbjct 1 MIRKMLVASAL-GAALCCAPVASAQPGPIYWDDPVRYSTDVPGMNYDAHLTGPCTNMDRF 59 Query 53 IFGRGPSGQAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPM 112 FGRGP G+A C + P NQ+PP TG+W SY L+GVQ +GAPCPKPQ+AAQ+PDG P+ Sbjct 60 TFGRGPGGEALQCRWIP-NQWPPIYTGFWQTSYELFGVQDIGAPCPKPQSAAQAPDGRPL 118 Query 113 LCLGARGWQPGWFTGAGFFP 132 +CLGA+GWQ G + G GF P Sbjct 119 VCLGAQGWQAGKYNGVGFTP 138 >gi|108799856|ref|YP_640053.1| hypothetical protein Mmcs_2890 [Mycobacterium sp. MCS] gi|119868966|ref|YP_938918.1| hypothetical protein Mkms_2934 [Mycobacterium sp. KMS] gi|126435499|ref|YP_001071190.1| hypothetical protein Mjls_2920 [Mycobacterium sp. JLS] gi|108770275|gb|ABG08997.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119695055|gb|ABL92128.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126235299|gb|ABN98699.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=140 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 79/140 (57%), Positives = 95/140 (68%), Gaps = 9/140 (6%) Query 1 MIRELVTTAAITGAAIGGAPVAGADPQ--------RYDGDVPGMNYDASLGAPCSSWERF 52 M REL +I GAA+G AP A ADP RY DVPGM+Y+A LGAPC SWER Sbjct 1 MFRELFVAVSIAGAAVGLAPGALADPSNDYHDDPGRYPTDVPGMSYEAKLGAPCYSWERN 60 Query 53 IFGRGPSGQAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPM 112 +FGRG G+ C + P NQ+PP TG+W +Y LYGVQ +GAPCP PQ+ AQ+PDG P+ Sbjct 61 VFGRGRGGEPLQCKWIP-NQWPPVYTGFWTATYALYGVQDIGAPCPGPQSTAQAPDGRPL 119 Query 113 LCLGARGWQPGWFTGAGFFP 132 LC+GARGWQP TG+G P Sbjct 120 LCVGARGWQPTVLTGSGLHP 139 >gi|118472096|ref|YP_887989.1| hypothetical protein MSMEG_3686 [Mycobacterium smegmatis str. MC2 155] gi|118173383|gb|ABK74279.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=141 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 74/108 (69%), Positives = 85/108 (79%), Gaps = 1/108 (0%) Query 25 DPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSGQAEACHFPPPNQFPPAETGYWVIS 84 +P RY DVPGM+Y+A +GAPC SW+R +FGRGP G A C + P NQ+PP TG+W S Sbjct 34 EPGRYSTDVPGMSYEAHMGAPCFSWDRNVFGRGPGGVAMQCKWIP-NQWPPVSTGFWTYS 92 Query 85 YPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGWQPGWFTGAGFFP 132 YPL+GVQ +GAPCP PQAAAQSPDG PMLCLG RGWQPG FTG GFFP Sbjct 93 YPLHGVQDIGAPCPGPQAAAQSPDGRPMLCLGERGWQPGVFTGDGFFP 140 >gi|315444816|ref|YP_004077695.1| hypothetical protein Mspyr1_32490 [Mycobacterium sp. Spyr1] gi|315263119|gb|ADT99860.1| hypothetical protein Mspyr1_32490 [Mycobacterium sp. Spyr1] Length=139 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/140 (56%), Positives = 99/140 (71%), Gaps = 10/140 (7%) Query 1 MIRELVTTAAITGAAIGGAPVAGA--------DPQRYDGDVPGMNYDASLGAPCSSWERF 52 MIR+++ +A+ GAA+ APVA A DP RY DVPGMNYDA L PC++ +RF Sbjct 1 MIRKMLVASAL-GAALCCAPVASAQPGPIYWDDPVRYSTDVPGMNYDAHLTGPCTNMDRF 59 Query 53 IFGRGPSGQAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPM 112 FGRGP G+A C + P NQ+PP TG+W SY L+GVQ +GAPCPKPQ+AAQ+ DG P+ Sbjct 60 TFGRGPGGEALQCRWIP-NQWPPIYTGFWQTSYELFGVQDIGAPCPKPQSAAQASDGRPL 118 Query 113 LCLGARGWQPGWFTGAGFFP 132 +CLGA+GWQ G + G GF P Sbjct 119 VCLGAQGWQAGKYNGVGFTP 138 >gi|333990616|ref|YP_004523230.1| hypothetical protein JDM601_1976 [Mycobacterium sp. JDM601] gi|333486584|gb|AEF35976.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=140 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 82/135 (61%), Positives = 95/135 (71%), Gaps = 3/135 (2%) Query 1 MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSG 60 MIREL A I GAA A Y GDVPGM G C SWER+I+G GP+G Sbjct 1 MIRELAAAAFIAGAAGAAAIAVAPAAGAYPGDVPGMAEGQRQGDACFSWERYIYGHGPNG 60 Query 61 QAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGW 120 QA ACHF NQ+PP +TG+W ISYPLYGVQ++G+PCP PQ+AAQSPDGLP+LCLGARGW Sbjct 61 QALACHFIA-NQWPPKDTGFWQISYPLYGVQEIGSPCPNPQSAAQSPDGLPLLCLGARGW 119 Query 121 QPGWFTGAG--FFPP 133 QPG +TG +FPP Sbjct 120 QPGIYTGGIGPYFPP 134 >gi|120403492|ref|YP_953321.1| hypothetical protein Mvan_2504 [Mycobacterium vanbaalenii PYR-1] gi|119956310|gb|ABM13315.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=140 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 74/140 (53%), Positives = 96/140 (69%), Gaps = 9/140 (6%) Query 1 MIRELVTTAAITGAAIGGAPVAGA--------DPQRYDGDVPGMNYDASLGAPCSSWERF 52 MIRE++ AA+ GAA+ AP A A +P RY DVPGM Y A L APC++ +RF Sbjct 1 MIREMLAAAALGGAALCAAPTAPAEPGPMYPDNPGRYATDVPGMVYGAHLTAPCTNMDRF 60 Query 53 IFGRGPSGQAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPM 112 FGRGP G+A C + P NQ+PP TG+W SYPL GV+ +G+PCP+ Q+AAQ+PDG P+ Sbjct 61 TFGRGPGGEALQCRWIP-NQWPPIYTGFWQTSYPLVGVRDIGSPCPQRQSAAQAPDGRPL 119 Query 113 LCLGARGWQPGWFTGAGFFP 132 +C+G +GWQ G F G GF P Sbjct 120 VCMGGQGWQAGKFNGVGFTP 139 >gi|289750472|ref|ZP_06509850.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289691059|gb|EFD58488.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length=98 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 57/59 (97%), Positives = 58/59 (99%), Gaps = 0/59 (0%) Query 77 ETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGWQPGWFTGAGFFPPEP 135 + GYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGWQPGWFTGAGFFPPEP Sbjct 40 KPGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGWQPGWFTGAGFFPPEP 98 >gi|120406526|ref|YP_956355.1| hypothetical protein Mvan_5584 [Mycobacterium vanbaalenii PYR-1] gi|119959344|gb|ABM16349.1| putative secreted protein [Mycobacterium vanbaalenii PYR-1] Length=123 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/129 (36%), Positives = 61/129 (48%), Gaps = 17/129 (13%) Query 4 ELVTTAAITGAAIGG----APVAGADPQRYDGD--VPGMNYDASLGAPCSSWERFIFGRG 57 +L+ AI GA +G + A A P DG VP +N DA GA C+ R+ FG Sbjct 2 KLMAAMAIAGAVLGAPLALSGTASATPSTCDGAGCVPSVNRDAQPGAYCNQSTRYNFGLD 61 Query 58 PSGQAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGA 117 SG AC+ WV S PL GV+ + +PC AQSPDG+P+ C G Sbjct 62 GSGNTLACN----------SKSMWVASPPLVGVRTLRSPCGDATGVAQSPDGVPLKCDGG 111 Query 118 RGWQPGWFT 126 W ++T Sbjct 112 -AWSADYWT 119 >gi|317506862|ref|ZP_07964634.1| excalibur calcium-binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254790|gb|EFV14088.1| excalibur calcium-binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length=197 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/86 (38%), Positives = 46/86 (54%), Gaps = 10/86 (11%) Query 42 LGAPCSSWERFIFGRGPSGQAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCP-KP 100 L APC + ERFIFG+GP+G+ AC + N P WV + G + G+ C Sbjct 117 LDAPCCNAERFIFGKGPNGEQLACAY-AGNTTP-----RWVSAASFVGTKTRGSACSFHT 170 Query 101 QAAAQSPDGLPMLCLG---ARGWQPG 123 A++PDG+ ++C+G WQPG Sbjct 171 DGTAETPDGIALICVGDASNSTWQPG 196 >gi|118469495|ref|YP_885654.1| hypothetical protein MSMEG_1263 [Mycobacterium smegmatis str. MC2 155] gi|118170782|gb|ABK71678.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=174 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/125 (33%), Positives = 52/125 (42%), Gaps = 8/125 (6%) Query 1 MIRELVTTAAITG----AAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGR 56 + R TAA++ AA P A P G VP + S G C+ F FG Sbjct 45 IARPYAATAAVSAGLCLAAWAMPPQAAGSPCDGPGCVPNLRSVVSEGGACAPRLHFPFGI 104 Query 57 GPSGQAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLG 116 G C + + G W + PL GV+ G+ C Q AQSPDGLP+LC G Sbjct 105 DAYGTTFICL----SSYRNPSQGIWSEAPPLVGVRASGSACAGNQGVAQSPDGLPLLCSG 160 Query 117 ARGWQ 121 W Sbjct 161 NSTWD 165 >gi|118472699|ref|YP_889040.1| hypothetical protein MSMEG_4783 [Mycobacterium smegmatis str. MC2 155] gi|118173986|gb|ABK74882.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=126 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/128 (33%), Positives = 62/128 (49%), Gaps = 15/128 (11%) Query 5 LVTTAAITGAAIGGAPVAGADPQRYDGD--VPGMNYDASLGAPCSSWERFIFG---RGPS 59 ++ AA A + AP A A PQ + VPG+N A LGAPCS+ ++FG R Sbjct 3 VIAAAATVLAGLLTAPPAAAGPQTCNDAFCVPGINPHAVLGAPCSNTTYYVFGVDARNNW 62 Query 60 GQAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCP-KPQAAAQSPDGLPMLCLGAR 118 G+ C P ++ P W S P+ G++ + C + AQ+PDGL + C+ Sbjct 63 GRLVFCG--SPRRYEP----RWFRSPPMAGIRDENSSCLGELNMVAQAPDGLFLTCVPMN 116 Query 119 G---WQPG 123 G W+ G Sbjct 117 GETLWRRG 124 >gi|145221816|ref|YP_001132494.1| hypothetical protein Mflv_1224 [Mycobacterium gilvum PYR-GCK] gi|315446447|ref|YP_004079326.1| hypothetical protein Mspyr1_49570 [Mycobacterium sp. Spyr1] gi|145214302|gb|ABP43706.1| putative secreted protein [Mycobacterium gilvum PYR-GCK] gi|315264750|gb|ADU01492.1| hypothetical protein Mspyr1_49570 [Mycobacterium sp. Spyr1] Length=124 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/99 (34%), Positives = 44/99 (45%), Gaps = 13/99 (13%) Query 18 GAPVAGADPQRYDGD--VPGMNYDASLGAPCSSWERFIFGRGPSGQAEACHFPPPNQFPP 75 GA A A P DG VP + G C R+ +G SG AC+ Sbjct 22 GAGTASALPGTCDGSGCVPFVRAGVQAGGHCLQTTRYNYGFDSSGNTLACN--------- 72 Query 76 AETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLC 114 W+ S PL GV+ + + C A AQSPDG+P++C Sbjct 73 -SKSTWISSPPLVGVRTLRSVC-DTSAVAQSPDGVPLVC 109 >gi|111020181|ref|YP_703153.1| hypothetical protein RHA1_ro03192 [Rhodococcus jostii RHA1] gi|110819711|gb|ABG94995.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=173 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/119 (29%), Positives = 54/119 (46%), Gaps = 26/119 (21%) Query 6 VTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSGQAEAC 65 VT A +T A + P+ GA QR G+ G++ + C + Sbjct 79 VTVAYVTDA-VQPEPIPGAAGQRCSGNRVGVDVNTGEDIVC---------------VYSS 122 Query 66 HFPPPNQFPPAETGYWVISYPLYGVQQVGAPC-PKPQAAAQSPDGLPMLCLGARGWQPG 123 + P ++ PAE + GV +G PC P A+Q+P+G+P+LC+ +GW PG Sbjct 123 DYYPDGKWVPAE---------IVGVHNIGEPCDPSIDRASQTPEGIPILCVQGQGWAPG 172 >gi|108797262|ref|YP_637459.1| hypothetical protein Mmcs_0282 [Mycobacterium sp. MCS] gi|119866347|ref|YP_936299.1| hypothetical protein Mkms_0292 [Mycobacterium sp. KMS] gi|126432886|ref|YP_001068577.1| hypothetical protein Mjls_0273 [Mycobacterium sp. JLS] gi|108767681|gb|ABG06403.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119692436|gb|ABL89509.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126232686|gb|ABN96086.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=126 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/109 (32%), Positives = 54/109 (50%), Gaps = 10/109 (9%) Query 22 AGADPQRYD--GDVPGMNYDASLGAPCSSWERFIFGRGPSGQAEACHFPPPNQFPPAETG 79 AGADP + VPG+ + +LGAPC++ F+FG G+ C P ++ P Sbjct 22 AGADPLGCEEPACVPGIAGNVTLGAPCANTSHFVFGTTDWGRLVFCG--SPRRYAP---- 75 Query 80 YWVISYPLYGVQQVGAPCPK-PQAAAQSPDGLPMLCLGARGWQPGWFTG 127 + S P+ G++ C + AQ+PDGL + C+ + G + W G Sbjct 76 RYFRSPPMEGIRVENTNCTGFENSVAQAPDGLFLSCVASSG-ESLWVRG 123 >gi|126437900|ref|YP_001073591.1| hypothetical protein Mjls_5337 [Mycobacterium sp. JLS] gi|126237700|gb|ABO01101.1| hypothetical protein Mjls_5337 [Mycobacterium sp. JLS] Length=121 Score = 42.4 bits (98), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/75 (38%), Positives = 34/75 (46%), Gaps = 11/75 (14%) Query 50 ERFIFGRGPSGQAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDG 109 R++FG SG C+ WV PL GV+ GAPC AQSPDG Sbjct 53 SRYLFGLDASGNTYLCN----------AQRAWVPQPPLVGVRTQGAPCDGSTGVAQSPDG 102 Query 110 LPMLCLGARGWQPGW 124 LP+ C GW P + Sbjct 103 LPLGCQRG-GWLPDF 116 >gi|108801919|ref|YP_642116.1| hypothetical protein Mmcs_4956 [Mycobacterium sp. MCS] gi|119871071|ref|YP_941023.1| hypothetical protein Mkms_5044 [Mycobacterium sp. KMS] gi|108772338|gb|ABG11060.1| putative secreted protein [Mycobacterium sp. MCS] gi|119697160|gb|ABL94233.1| putative secreted protein [Mycobacterium sp. KMS] Length=121 Score = 42.4 bits (98), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/75 (38%), Positives = 34/75 (46%), Gaps = 11/75 (14%) Query 50 ERFIFGRGPSGQAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDG 109 R++FG SG C+ WV PL GV+ GAPC AQSPDG Sbjct 53 SRYLFGLDASGNTYLCN----------AQRAWVPQPPLVGVRTQGAPCDGSTGVAQSPDG 102 Query 110 LPMLCLGARGWQPGW 124 LP+ C GW P + Sbjct 103 LPLGCQRG-GWLPDF 116 >gi|240173060|ref|ZP_04751718.1| hypothetical protein MkanA1_27356 [Mycobacterium kansasii ATCC 12478] Length=130 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 37/135 (28%), Positives = 57/135 (43%), Gaps = 19/135 (14%) Query 5 LVTTAAITGAAIGGAPVAGADPQ--RYDGDVPGMNYDASLGAPCSSWERFIFGRGPS--- 59 + AA+ G + AP A A P Y PG+ + LGAPC + ++FG Sbjct 1 MAAIAALLGMTVLTAPPAAAGPTVCDYPACTPGITPNVVLGAPCDNTTYYVFGTADYYVS 60 Query 60 -----GQAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPK--PQAAAQSPDGLPM 112 G+ C P ++ P W S P+ G++ + C + AQ+PDGL + Sbjct 61 FATEPGRLMFCG--SPRRYEPR----WFRSPPMAGIKDENSDCTRYPEYYVAQAPDGLFL 114 Query 113 LCLGARGWQPGWFTG 127 +C+ G W G Sbjct 115 VCVAQNG-HARWVRG 128 >gi|183984669|ref|YP_001852960.1| hypothetical protein MMAR_4701 [Mycobacterium marinum M] gi|183177995|gb|ACC43105.1| conserved hypothetical secreted protein [Mycobacterium marinum M] Length=138 Score = 40.8 bits (94), Expect = 0.073, Method: Compositional matrix adjust. Identities = 38/133 (29%), Positives = 59/133 (45%), Gaps = 22/133 (16%) Query 5 LVTTAAITGAAIGG----APVAGADPQRYD--GDVPGMNYDASLGAPCSSWERFIFGRGP 58 + + AA+ G+A+ AP+A A+P D PG+ LGAPC S ++FG Sbjct 5 VASVAAVLGSAMWAGLPVAPLAVAEPSTCDYPDCTPGIRPHVVLGAPCDSTTYYVFGTAD 64 Query 59 S--------GQAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPK--PQAAAQSPD 108 G+ C P ++ P W S P+ G++ + C AQ+PD Sbjct 65 YYVSFATQPGRLMFCG--SPRRYEPR----WFRSPPMAGIKDENSSCTDFPEYYVAQAPD 118 Query 109 GLPMLCLGARGWQ 121 GL ++C+ G Q Sbjct 119 GLFLVCVAHDGRQ 131 >gi|41406867|ref|NP_959703.1| hypothetical protein MAP0769 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395217|gb|AAS03086.1| hypothetical protein MAP_0769 [Mycobacterium avium subsp. paratuberculosis K-10] Length=139 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 38/125 (31%), Positives = 56/125 (45%), Gaps = 18/125 (14%) Query 2 IRELVT-TAAITGAAIGGAP--VAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGP 58 +R +V AA+ A + AP +AG Y PG+ LGAPC + ++FG Sbjct 7 VRSIVALVAALLCAGVLAAPPSLAGPTVCDYPACTPGIMPHQVLGAPCDNTTYYVFGVDD 66 Query 59 S--------GQAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQA-AAQSPDG 109 S G+ C P ++ P W S P+ GV++ C Q AQ+PDG Sbjct 67 SVVPPGAQPGRLMFCG--SPRRYQPR----WFRSPPMAGVKEENTECQNYQNYVAQAPDG 120 Query 110 LPMLC 114 L ++C Sbjct 121 LFLVC 125 >gi|145223102|ref|YP_001133780.1| hypothetical protein Mflv_2515 [Mycobacterium gilvum PYR-GCK] gi|315443559|ref|YP_004076438.1| hypothetical protein Mspyr1_19420 [Mycobacterium sp. Spyr1] gi|145215588|gb|ABP44992.1| hypothetical protein Mflv_2515 [Mycobacterium gilvum PYR-GCK] gi|315261862|gb|ADT98603.1| hypothetical protein Mspyr1_19420 [Mycobacterium sp. Spyr1] Length=142 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 32/110 (30%), Positives = 49/110 (45%), Gaps = 10/110 (9%) Query 28 RYDGDVPGMNYDASLGAPCSSWERFIFGRGPSGQAEACHFPPPNQFPPAETGYWVISYPL 87 Y PG+ + LG+ C++ + FG G+ C P ++ P W S + Sbjct 37 NYPNCTPGIQPNVVLGSYCANTTYYAFGVTDWGRLVFCG--SPRRYEPR----WFRSPEM 90 Query 88 YGVQQVGAPCPKPQA-AAQSPDGLPMLCLGARG---WQPGWFTGAGFFPP 133 +GV+ VG CP AQ+PDGL + C+ W+ G + G PP Sbjct 91 HGVKNVGDLCPALDGEVAQAPDGLFLTCIAKDNRSYWERGDASVGGGNPP 140 >gi|344281967|ref|XP_003412747.1| PREDICTED: protocadherin-11 X-linked-like isoform 6 [Loxodonta africana] Length=1300 Score = 38.1 bits (87), Expect = 0.46, Method: Composition-based stats. Identities = 29/82 (36%), Positives = 32/82 (40%), Gaps = 16/82 (19%) Query 58 PSGQAEACHFPPP--------NQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAA--QSP 107 P QA A H PP + PPA+ S PL + P PQ AA SP Sbjct 1163 PPAQASALHHSPPLAQATVLRHSPPPAQVSALCYSPPLAQAAAIHRSPPLPQVAALRHSP 1222 Query 108 DGLPMLCLGARGWQPGWFTGAG 129 PM G Q GW GAG Sbjct 1223 AQPPM------GLQQGWVQGAG 1238 >gi|344281961|ref|XP_003412744.1| PREDICTED: protocadherin-11 X-linked-like isoform 3 [Loxodonta africana] Length=1319 Score = 38.1 bits (87), Expect = 0.46, Method: Composition-based stats. Identities = 29/82 (36%), Positives = 32/82 (40%), Gaps = 16/82 (19%) Query 58 PSGQAEACHFPPP--------NQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAA--QSP 107 P QA A H PP + PPA+ S PL + P PQ AA SP Sbjct 1182 PPAQASALHHSPPLAQATVLRHSPPPAQVSALCYSPPLAQAAAIHRSPPLPQVAALRHSP 1241 Query 108 DGLPMLCLGARGWQPGWFTGAG 129 PM G Q GW GAG Sbjct 1242 AQPPM------GLQQGWVQGAG 1257 >gi|344281965|ref|XP_003412746.1| PREDICTED: protocadherin-11 X-linked-like isoform 5 [Loxodonta africana] Length=1329 Score = 38.1 bits (87), Expect = 0.46, Method: Composition-based stats. Identities = 29/82 (36%), Positives = 32/82 (40%), Gaps = 16/82 (19%) Query 58 PSGQAEACHFPPP--------NQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAA--QSP 107 P QA A H PP + PPA+ S PL + P PQ AA SP Sbjct 1192 PPAQASALHHSPPLAQATVLRHSPPPAQVSALCYSPPLAQAAAIHRSPPLPQVAALRHSP 1251 Query 108 DGLPMLCLGARGWQPGWFTGAG 129 PM G Q GW GAG Sbjct 1252 AQPPM------GLQQGWVQGAG 1267 >gi|344281963|ref|XP_003412745.1| PREDICTED: protocadherin-11 X-linked-like isoform 4 [Loxodonta africana] Length=1327 Score = 38.1 bits (87), Expect = 0.46, Method: Composition-based stats. Identities = 29/82 (36%), Positives = 32/82 (40%), Gaps = 16/82 (19%) Query 58 PSGQAEACHFPPP--------NQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAA--QSP 107 P QA A H PP + PPA+ S PL + P PQ AA SP Sbjct 1190 PPAQASALHHSPPLAQATVLRHSPPPAQVSALCYSPPLAQAAAIHRSPPLPQVAALRHSP 1249 Query 108 DGLPMLCLGARGWQPGWFTGAG 129 PM G Q GW GAG Sbjct 1250 AQPPM------GLQQGWVQGAG 1265 >gi|344281959|ref|XP_003412743.1| PREDICTED: protocadherin-11 X-linked-like isoform 2 [Loxodonta africana] Length=1337 Score = 38.1 bits (87), Expect = 0.47, Method: Composition-based stats. Identities = 29/82 (36%), Positives = 32/82 (40%), Gaps = 16/82 (19%) Query 58 PSGQAEACHFPPP--------NQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAA--QSP 107 P QA A H PP + PPA+ S PL + P PQ AA SP Sbjct 1200 PPAQASALHHSPPLAQATVLRHSPPPAQVSALCYSPPLAQAAAIHRSPPLPQVAALRHSP 1259 Query 108 DGLPMLCLGARGWQPGWFTGAG 129 PM G Q GW GAG Sbjct 1260 AQPPM------GLQQGWVQGAG 1275 >gi|118470485|ref|YP_887182.1| hypothetical protein MSMEG_2862 [Mycobacterium smegmatis str. MC2 155] gi|118171772|gb|ABK72668.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=130 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 39/122 (32%), Positives = 58/122 (48%), Gaps = 13/122 (10%) Query 6 VTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSGQAEAC 65 V +AA+T A+ G P A A+ VPG+ + LGAPC+ R +FG G+ C Sbjct 17 VVSAAMT--AVSGQP-AYAESCDEPSCVPGITPNVVLGAPCADTARHVFGTTSWGRLVFC 73 Query 66 HFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQA-AAQSPDGLPMLCLGARG---WQ 121 P ++ P + S + GV++ G C + AQ+PDGL + C G W+ Sbjct 74 G--SPRRYEP----RYFRSPQMAGVKEPGTSCAGYEHWVAQAPDGLFLSCQSHDGAPLWE 127 Query 122 PG 123 G Sbjct 128 RG 129 >gi|333992106|ref|YP_004524720.1| hypothetical protein JDM601_3466 [Mycobacterium sp. JDM601] gi|333488074|gb|AEF37466.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=139 Score = 37.4 bits (85), Expect = 0.79, Method: Compositional matrix adjust. Identities = 28/98 (29%), Positives = 48/98 (49%), Gaps = 11/98 (11%) Query 33 VPGMNYDASLGAPCSSWERFIFGRGPSGQA----EACHFPPPNQFPPAETGYWVISYPLY 88 PG+ + LGAPCS+ F+FG +G + + P ++ P W S ++ Sbjct 44 TPGIAPNVVLGAPCSNTTYFVFGSAVAGPSTLPGRLVYCGSPRRYEP----RWFRSPEMH 99 Query 89 GVQQVGAPCPK-PQAAAQSPDGLPMLCL--GARGWQPG 123 G+++ + C + AQ+PDGL + C+ G W+ G Sbjct 100 GIKEENSRCDEYVGEVAQAPDGLFLACVADGEALWRRG 137 >gi|254818337|ref|ZP_05223338.1| hypothetical protein MintA_00335 [Mycobacterium intracellulare ATCC 13950] Length=123 Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust. Identities = 36/115 (32%), Positives = 49/115 (43%), Gaps = 7/115 (6%) Query 11 ITGAAIGGAPVAGADPQ--RYDGDVPGMNYDASLGAPCSSWERFIFGRGPSGQAEACHFP 68 + GA + AP A A P Y PG+ LGAPC + + FG G P Sbjct 1 MLGAGVVAAPPASAGPTVCDYPACTPGIMPHQVLGAPCDNTTYYAFGVA-DGYVSFASEP 59 Query 69 PPNQFPPAETGY---WVISYPLYGVQQVGAPCPK-PQAAAQSPDGLPMLCLGARG 119 F + Y W S P+ GV++ A C AQ+PDGL ++C+ G Sbjct 60 GRLMFCGSPRRYQPRWFRSPPMAGVKEENADCTNYLNYVAQAPDGLFLICIAHDG 114 >gi|342860441|ref|ZP_08717092.1| hypothetical protein MCOL_16241 [Mycobacterium colombiense CECT 3035] gi|342132096|gb|EGT85337.1| hypothetical protein MCOL_16241 [Mycobacterium colombiense CECT 3035] Length=123 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 36/115 (32%), Positives = 49/115 (43%), Gaps = 7/115 (6%) Query 11 ITGAAIGGAPVAGADPQ--RYDGDVPGMNYDASLGAPCSSWERFIFGRGPSGQAEACHFP 68 + GA + AP A A P Y PG+ LGAPC + + FG G P Sbjct 1 MLGAGVVAAPPASAGPTVCDYPACTPGIMPHQVLGAPCENTSYYAFGVA-DGYVSFASEP 59 Query 69 PPNQFPPAETGY---WVISYPLYGVQQVGAPCPK-PQAAAQSPDGLPMLCLGARG 119 F + Y W S P+ GV++ A C AQ+PDGL ++C+ G Sbjct 60 GRLMFCGSPRRYQPRWFRSPPMAGVKEENADCQNYLNYVAQAPDGLFLICIAHDG 114 >gi|120405097|ref|YP_954926.1| hypothetical protein Mvan_4143 [Mycobacterium vanbaalenii PYR-1] gi|45775296|gb|AAS77251.1| hypothetical protein [Mycobacterium vanbaalenii PYR-1] gi|119957915|gb|ABM14920.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=142 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 30/110 (28%), Positives = 49/110 (45%), Gaps = 10/110 (9%) Query 28 RYDGDVPGMNYDASLGAPCSSWERFIFGRGPSGQAEACHFPPPNQFPPAETGYWVISYPL 87 Y PG+ + LG+ C++ ++FG G+ C P ++ P W + + Sbjct 37 NYPNCTPGIQPNVVLGSYCANTTYYVFGVTDWGRLVFCG--SPRRYEPR----WFRAPEM 90 Query 88 YGVQQVGAPCPKPQA-AAQSPDGLPMLCLGARG---WQPGWFTGAGFFPP 133 +GV+ G CP AQ+PDGL + C+ W+ G + G PP Sbjct 91 HGVKNQGDLCPALDGQVAQAPDGLFLTCIAKDNRSYWERGDASVGGGNPP 140 >gi|145225109|ref|YP_001135787.1| hypothetical protein Mflv_4531 [Mycobacterium gilvum PYR-GCK] gi|145217595|gb|ABP46999.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=118 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 36/121 (30%), Positives = 52/121 (43%), Gaps = 10/121 (8%) Query 10 AITGAAIGGAPVAGADPQRYDGD--VPGMNYDASLGAPCSSWERFIFGRGPSGQAEACHF 67 A A +G A A P D PG+ LGAPC+ ++FG G+ C Sbjct 2 ASLSAGLGTAAPGAAQPASCDDAFCTPGIRPAVVLGAPCADTANYVFGTTSWGRLVFCG- 60 Query 68 PPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQA-AAQSPDGLPMLCLGARGWQPGWFT 126 P ++ P + S + GV+ + + C + AQSPDGL + C +R P W Sbjct 61 -SPRRYEP----RYFRSPSMAGVKALDSSCAGYENWVAQSPDGLFLTCQ-SRNGAPNWSR 114 Query 127 G 127 G Sbjct 115 G 115 >gi|47227297|emb|CAF96846.1| unnamed protein product [Tetraodon nigroviridis] Length=2196 Score = 34.7 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 25/62 (41%), Positives = 29/62 (47%), Gaps = 8/62 (12%) Query 55 GRGPSGQAEACHFPPPNQF---PPAETGYWVISYPLYGVQQVGAPCPKP-----QAAAQS 106 GRGPSG+ A HF P QF P + +S V+ GA P P A AQS Sbjct 1708 GRGPSGEMSALHFNPHGQFGSRPHPSPPHRGLSEDARPVRHSGALLPTPPEVLGPARAQS 1767 Query 107 PD 108 PD Sbjct 1768 PD 1769 >gi|120403841|ref|YP_953670.1| hypothetical protein Mvan_2858 [Mycobacterium vanbaalenii PYR-1] gi|119956659|gb|ABM13664.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=120 Score = 33.9 bits (76), Expect = 8.9, Method: Compositional matrix adjust. Identities = 29/96 (31%), Positives = 42/96 (44%), Gaps = 8/96 (8%) Query 33 VPGMNYDASLGAPCSSWERFIFGRGPSGQAEACHFPPPNQFPPAETGYWVISYPLYGVQQ 92 PG+ LGAPC+ ++FG G+ C P ++ P + S + GV++ Sbjct 29 TPGIRPAVVLGAPCADTAHYVFGTTSWGRLVFCG--SPRRYEP----RYFRSPSMAGVKE 82 Query 93 VGAPCPKPQA-AAQSPDGLPMLCLGARGWQPGWFTG 127 A C + AQ PDGL + C G P W G Sbjct 83 FNASCAGYENWVAQGPDGLFLTCQSKDG-APRWGRG 117 Lambda K H 0.319 0.140 0.483 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129391415580 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40