BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1893

Length=72
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609030|ref|NP_216409.1|  hypothetical protein Rv1893 [Mycoba...   139    1e-31
gi|240170540|ref|ZP_04749199.1|  hypothetical protein MkanA1_1460...   115    2e-24
gi|41407715|ref|NP_960551.1|  hypothetical protein MAP1617 [Mycob...   110    5e-23
gi|254822530|ref|ZP_05227531.1|  hypothetical protein MintA_21554...   110    5e-23
gi|342859542|ref|ZP_08716195.1|  hypothetical protein MCOL_11703 ...   107    5e-22
gi|118616861|ref|YP_905193.1|  hypothetical protein MUL_1142 [Myc...   106    9e-22
gi|296164914|ref|ZP_06847470.1|  conserved hypothetical protein [...   103    8e-21
gi|15828094|ref|NP_302357.1|  hypothetical protein ML2022 [Mycoba...  98.2    3e-19
gi|4582350|emb|CAB40293.1|  hypothetical protein MLCB561.11 [Myco...  96.7    9e-19
gi|333991121|ref|YP_004523735.1|  hypothetical protein JDM601_248...  94.0    7e-18
gi|333921982|ref|YP_004495563.1|  hypothetical protein AS9A_4330 ...  50.1    1e-04
gi|296140165|ref|YP_003647408.1|  hypothetical protein Tpau_2464 ...  42.7    0.018
gi|256423262|ref|YP_003123915.1|  amidase [Chitinophaga pinensis ...  39.3    0.17 
gi|298706849|emb|CBJ25813.1|  Glycosyltransferase, family GT49 [E...  37.7    0.62 
gi|299136689|ref|ZP_07029872.1|  Amidase [Acidobacterium sp. MP5A...  36.2    1.6  
gi|91790145|ref|YP_551097.1|  heavy metal translocating P-type AT...  34.7    5.0  
gi|28211049|ref|NP_781993.1|  ferric enterobactin transport ATP-b...  34.7    5.0  


>gi|15609030|ref|NP_216409.1| hypothetical protein Rv1893 [Mycobacterium tuberculosis H37Rv]
 gi|15841363|ref|NP_336400.1| hypothetical protein MT1943 [Mycobacterium tuberculosis CDC1551]
 gi|31793085|ref|NP_855578.1| hypothetical protein Mb1926 [Mycobacterium bovis AF2122/97]
 78 more sequence titles
 Length=72

 Score =  139 bits (350),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 72/72 (100%), Positives = 72/72 (100%), Gaps = 0/72 (0%)

Query  1   MSFNPKDAVDAVRDIAANAVEKASDIVENAGHIIRGDIAGGASGIVKDSIDIATHAVDRT  60
           MSFNPKDAVDAVRDIAANAVEKASDIVENAGHIIRGDIAGGASGIVKDSIDIATHAVDRT
Sbjct  1   MSFNPKDAVDAVRDIAANAVEKASDIVENAGHIIRGDIAGGASGIVKDSIDIATHAVDRT  60

Query  61  KEVFTGKTDDEG  72
           KEVFTGKTDDEG
Sbjct  61  KEVFTGKTDDEG  72


>gi|240170540|ref|ZP_04749199.1| hypothetical protein MkanA1_14600 [Mycobacterium kansasii ATCC 
12478]
Length=72

 Score =  115 bits (288),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 60/70 (86%), Positives = 63/70 (90%), Gaps = 0/70 (0%)

Query  1   MSFNPKDAVDAVRDIAANAVEKASDIVENAGHIIRGDIAGGASGIVKDSIDIATHAVDRT  60
           M+ NPKDAVDA +DIA NAVEKASDIVENAG IIRGDIAGGASGIV+ SIDIATHAVDR 
Sbjct  1   MAINPKDAVDAAKDIATNAVEKASDIVENAGDIIRGDIAGGASGIVQSSIDIATHAVDRV  60

Query  61  KEVFTGKTDD  70
           KEVFTGK DD
Sbjct  61  KEVFTGKDDD  70


>gi|41407715|ref|NP_960551.1| hypothetical protein MAP1617 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118464696|ref|YP_881995.1| hypothetical protein MAV_2808 [Mycobacterium avium 104]
 gi|254775288|ref|ZP_05216804.1| hypothetical protein MaviaA2_11541 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41396068|gb|AAS03934.1| hypothetical protein MAP_1617 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118165983|gb|ABK66880.1| conserved hypothetical protein [Mycobacterium avium 104]
 gi|336457554|gb|EGO36560.1| hypothetical protein MAPs_22260 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=76

 Score =  110 bits (276),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 57/69 (83%), Positives = 63/69 (92%), Gaps = 0/69 (0%)

Query  1   MSFNPKDAVDAVRDIAANAVEKASDIVENAGHIIRGDIAGGASGIVKDSIDIATHAVDRT  60
           M+FNPKDAVDA RDIA NAVEKASDIVE+A  IIRGDIAGGASGIV++SIDI T+AVDRT
Sbjct  1   MAFNPKDAVDAARDIATNAVEKASDIVEHASDIIRGDIAGGASGIVQNSIDIGTYAVDRT  60

Query  61  KEVFTGKTD  69
           KEVFTG+ D
Sbjct  61  KEVFTGRHD  69


>gi|254822530|ref|ZP_05227531.1| hypothetical protein MintA_21554 [Mycobacterium intracellulare 
ATCC 13950]
Length=73

 Score =  110 bits (276),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 55/69 (80%), Positives = 63/69 (92%), Gaps = 0/69 (0%)

Query  1   MSFNPKDAVDAVRDIAANAVEKASDIVENAGHIIRGDIAGGASGIVKDSIDIATHAVDRT  60
           M+FNPKDAVDA RDIA NAVEKASDIVE+A  IIRGD+AGGASGIV++SIDI T+A+DRT
Sbjct  1   MAFNPKDAVDAARDIATNAVEKASDIVEHASDIIRGDLAGGASGIVQNSIDIGTYALDRT  60

Query  61  KEVFTGKTD  69
           KEVFTG+ D
Sbjct  61  KEVFTGRQD  69


>gi|342859542|ref|ZP_08716195.1| hypothetical protein MCOL_11703 [Mycobacterium colombiense CECT 
3035]
 gi|342132674|gb|EGT85894.1| hypothetical protein MCOL_11703 [Mycobacterium colombiense CECT 
3035]
Length=73

 Score =  107 bits (268),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 54/67 (81%), Positives = 61/67 (92%), Gaps = 0/67 (0%)

Query  1   MSFNPKDAVDAVRDIAANAVEKASDIVENAGHIIRGDIAGGASGIVKDSIDIATHAVDRT  60
           M+FNPKDAVDA RDIA NAVEKASDIVE+A  IIRGD+AGGASGIV +SIDI T+A+DRT
Sbjct  1   MAFNPKDAVDAARDIATNAVEKASDIVEHASDIIRGDLAGGASGIVANSIDIGTYALDRT  60

Query  61  KEVFTGK  67
           KEVFTG+
Sbjct  61  KEVFTGR  67


>gi|118616861|ref|YP_905193.1| hypothetical protein MUL_1142 [Mycobacterium ulcerans Agy99]
 gi|183982792|ref|YP_001851083.1| hypothetical protein MMAR_2786 [Mycobacterium marinum M]
 gi|118568971|gb|ABL03722.1| conserved secreted protein [Mycobacterium ulcerans Agy99]
 gi|183176118|gb|ACC41228.1| conserved secreted protein [Mycobacterium marinum M]
Length=72

 Score =  106 bits (265),  Expect = 9e-22, Method: Compositional matrix adjust.
 Identities = 54/70 (78%), Positives = 61/70 (88%), Gaps = 0/70 (0%)

Query  1   MSFNPKDAVDAVRDIAANAVEKASDIVENAGHIIRGDIAGGASGIVKDSIDIATHAVDRT  60
           M+ NPKDAV+A RDIA NAVEKASDIVENA  IIRGD++GGASGIV++SIDIATHAVD+ 
Sbjct  1   MAINPKDAVNAARDIATNAVEKASDIVENASDIIRGDVSGGASGIVQNSIDIATHAVDKV  60

Query  61  KEVFTGKTDD  70
           KEV  GK DD
Sbjct  61  KEVLIGKDDD  70


>gi|296164914|ref|ZP_06847470.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899756|gb|EFG79206.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=74

 Score =  103 bits (257),  Expect = 8e-21, Method: Compositional matrix adjust.
 Identities = 54/73 (74%), Positives = 63/73 (87%), Gaps = 2/73 (2%)

Query  1   MSFNPKDAVDAVRDIAANAVEKASDIVENAGHIIRGDIAGGASGIVKDSIDIATHAVDRT  60
           M F PKDAVDA RDIA NAVEKASDIVE+A  IIRGDI+GGASGIV++SIDI T+AVDRT
Sbjct  1   MGFKPKDAVDAARDIATNAVEKASDIVEHASDIIRGDISGGASGIVQNSIDIGTYAVDRT  60

Query  61  KEVFTGK--TDDE  71
           +E+F+G+   DDE
Sbjct  61  REMFSGRDELDDE  73


>gi|15828094|ref|NP_302357.1| hypothetical protein ML2022 [Mycobacterium leprae TN]
 gi|221230571|ref|YP_002503987.1| hypothetical protein MLBr_02022 [Mycobacterium leprae Br4923]
 gi|13093648|emb|CAC30977.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933678|emb|CAR72119.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=174

 Score = 98.2 bits (243),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 48/67 (72%), Positives = 58/67 (87%), Gaps = 0/67 (0%)

Query  1    MSFNPKDAVDAVRDIAANAVEKASDIVENAGHIIRGDIAGGASGIVKDSIDIATHAVDRT  60
            M+F+PK+AV+A RDIA N VEKASDIVEN   II+GDIAGGA+ IV++SIDIATHAVD+ 
Sbjct  101  MTFDPKNAVNAARDIATNFVEKASDIVENVSDIIKGDIAGGANDIVQNSIDIATHAVDKA  160

Query  61   KEVFTGK  67
            KE+F GK
Sbjct  161  KEIFIGK  167


>gi|4582350|emb|CAB40293.1| hypothetical protein MLCB561.11 [Mycobacterium leprae]
Length=74

 Score = 96.7 bits (239),  Expect = 9e-19, Method: Compositional matrix adjust.
 Identities = 48/67 (72%), Positives = 58/67 (87%), Gaps = 0/67 (0%)

Query  1   MSFNPKDAVDAVRDIAANAVEKASDIVENAGHIIRGDIAGGASGIVKDSIDIATHAVDRT  60
           M+F+PK+AV+A RDIA N VEKASDIVEN   II+GDIAGGA+ IV++SIDIATHAVD+ 
Sbjct  1   MTFDPKNAVNAARDIATNFVEKASDIVENVSDIIKGDIAGGANDIVQNSIDIATHAVDKA  60

Query  61  KEVFTGK  67
           KE+F GK
Sbjct  61  KEIFIGK  67


>gi|333991121|ref|YP_004523735.1| hypothetical protein JDM601_2481 [Mycobacterium sp. JDM601]
 gi|333487089|gb|AEF36481.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=76

 Score = 94.0 bits (232),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 46/67 (69%), Positives = 58/67 (87%), Gaps = 0/67 (0%)

Query  1   MSFNPKDAVDAVRDIAANAVEKASDIVENAGHIIRGDIAGGASGIVKDSIDIATHAVDRT  60
           M+  PKDA +A RDIA +AVEKASDIVE+AG IIRGD++GG + IV+DS++IATHAV+RT
Sbjct  1   MAITPKDAFNAARDIATHAVEKASDIVEDAGDIIRGDVSGGVNAIVQDSMEIATHAVERT  60

Query  61  KEVFTGK  67
           KEVFT +
Sbjct  61  KEVFTDR  67


>gi|333921982|ref|YP_004495563.1| hypothetical protein AS9A_4330 [Amycolicicoccus subflavus DQS3-9A1]
 gi|333484203|gb|AEF42763.1| hypothetical protein AS9A_4330 [Amycolicicoccus subflavus DQS3-9A1]
Length=92

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 23/61 (38%), Positives = 40/61 (66%), Gaps = 0/61 (0%)

Query  5   PKDAVDAVRDIAANAVEKASDIVENAGHIIRGDIAGGASGIVKDSIDIATHAVDRTKEVF  64
           P + VDA++ IA  +++K+ +IVE A   ++G+++GG   I+K S DIAT+A  +   + 
Sbjct  11  PTNTVDAMKHIAQTSLDKSGEIVEGAADTLKGNVSGGIGKIIKSSTDIATNAAGKGTRIL  70

Query  65  T  65
           T
Sbjct  71  T  71


>gi|296140165|ref|YP_003647408.1| hypothetical protein Tpau_2464 [Tsukamurella paurometabola DSM 
20162]
 gi|296028299|gb|ADG79069.1| hypothetical protein Tpau_2464 [Tsukamurella paurometabola DSM 
20162]
Length=87

 Score = 42.7 bits (99),  Expect = 0.018, Method: Compositional matrix adjust.
 Identities = 22/51 (44%), Positives = 32/51 (63%), Gaps = 0/51 (0%)

Query  6   KDAVDAVRDIAANAVEKASDIVENAGHIIRGDIAGGASGIVKDSIDIATHA  56
           KD +DA  ++A N+V ++ +IVE A   +RGD+ GG   I   + DIAT A
Sbjct  7   KDNIDAAVNVATNSVARSGEIVEGAAQALRGDVKGGIGKIATSATDIATTA  57


>gi|256423262|ref|YP_003123915.1| amidase [Chitinophaga pinensis DSM 2588]
 gi|256038170|gb|ACU61714.1| Amidase [Chitinophaga pinensis DSM 2588]
Length=475

 Score = 39.3 bits (90),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 29/72 (41%), Positives = 40/72 (56%), Gaps = 8/72 (11%)

Query  2    SFNPKDAVDAVRDIAANAVEKASDIVENAGHIIRGDIAGGASGI---VKDSIDIATHAVD  58
            +FNP  A++A+  IA NA+E A    ENA  ++RG+  G   G+   VKDSID A     
Sbjct  43   AFNP--AINAIVTIADNAMEVAKK-AENA--VLRGNELGPLHGVPFTVKDSIDTANILTQ  97

Query  59   RTKEVFTGKTDD  70
            R   +F G+  D
Sbjct  98   RGSPIFKGRIPD  109


>gi|298706849|emb|CBJ25813.1| Glycosyltransferase, family GT49 [Ectocarpus siliculosus]
Length=1541

 Score = 37.7 bits (86),  Expect = 0.62, Method: Composition-based stats.
 Identities = 23/72 (32%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query  7     DAVDAVRDIAANAVEKASDIVENAGHII------RGDIAGGASGIVKDSIDIATHAVDRT  60
             + +DA  D+AA+ ++ A D+ E+ G  +       GD+AGGA   + D++D     VD  
Sbjct  1118  EGLDAAGDLAADGLDAAGDLAEDIGEGMGDGLEAAGDLAGGAVDAITDAVDGVADDVDMY  1177

Query  61    KEVFTGKTDDEG  72
                     DDEG
Sbjct  1178  AGAGPRDLDDEG  1189


>gi|299136689|ref|ZP_07029872.1| Amidase [Acidobacterium sp. MP5ACTX8]
 gi|298601204|gb|EFI57359.1| Amidase [Acidobacterium sp. MP5ACTX8]
Length=469

 Score = 36.2 bits (82),  Expect = 1.6, Method: Composition-based stats.
 Identities = 27/72 (38%), Positives = 37/72 (52%), Gaps = 8/72 (11%)

Query  2    SFNPKDAVDAVRDIAANAVEKASDIVENAGHIIRGDIAGGASGI---VKDSIDIATHAVD  58
            + NPK  V+A+  IA  A+E A    E    ++RGD  G   G+   VKDSID A     
Sbjct  37   AVNPK--VNAIVTIADGALESAK---EAEAAVLRGDELGPLHGVPFTVKDSIDTANVLTQ  91

Query  59   RTKEVFTGKTDD  70
            R   +F G+T +
Sbjct  92   RGSPIFKGRTPE  103


>gi|91790145|ref|YP_551097.1| heavy metal translocating P-type ATPase [Polaromonas sp. JS666]
 gi|91699370|gb|ABE46199.1| Heavy metal translocating P-type ATPase [Polaromonas sp. JS666]
Length=760

 Score = 34.7 bits (78),  Expect = 5.0, Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 23/36 (64%), Gaps = 0/36 (0%)

Query  11   AVRDIAANAVEKASDIVENAGHIIRGDIAGGASGIV  46
            A+    A AV  A +I E AGH ++G IAGGA+G V
Sbjct  508  AIVQAVAGAVPGAENITEIAGHGLQGQIAGGAAGRV  543


>gi|28211049|ref|NP_781993.1| ferric enterobactin transport ATP-binding protein fepC [Clostridium 
tetani E88]
 gi|28203488|gb|AAO35930.1| ferric enterobactin transport ATP-binding protein fepC [Clostridium 
tetani E88]
Length=397

 Score = 34.7 bits (78),  Expect = 5.0, Method: Composition-based stats.
 Identities = 20/72 (28%), Positives = 45/72 (63%), Gaps = 5/72 (6%)

Query  1    MSFNPKDAVDAVRDIAANAVEKASDIVENAGHIIRGDIAGGASGIVKDSIDIATHAVDRT  60
            +S   ++A ++++DI    ++KA  +++N   +I  D A     I KD++ + ++A+++ 
Sbjct  304  LSVLKENAFESIKDIN---IKKAKSMIDNVSFVI--DSAYKIGEINKDNVQLISYALEQG  358

Query  61   KEVFTGKTDDEG  72
            K+VF+ + +DEG
Sbjct  359  KKVFSFRKEDEG  370



Lambda     K      H
   0.312    0.131    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127392703088


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40