BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1901 Length=430 Score E Sequences producing significant alignments: (Bits) Value gi|15609038|ref|NP_216417.1| competence damage-inducible protein... 860 0.0 gi|15841372|ref|NP_336409.1| competence damage-inducible protein... 859 0.0 gi|340626910|ref|YP_004745362.1| putative CINA-like protein CINA... 859 0.0 gi|339298461|gb|AEJ50571.1| competence damage-inducible protein ... 855 0.0 gi|254822538|ref|ZP_05227539.1| competence damage-inducible prot... 718 0.0 gi|183982802|ref|YP_001851093.1| competence/damage-inducible pro... 717 0.0 gi|41407723|ref|NP_960559.1| competence damage-inducible protein... 698 0.0 gi|118618357|ref|YP_906689.1| competence damage-inducible protei... 697 0.0 gi|336457383|gb|EGO36392.1| competence/damage-inducible protein ... 696 0.0 gi|240172576|ref|ZP_04751235.1| competence damage-inducible prot... 694 0.0 gi|118465937|ref|YP_881987.1| competence damage-inducible protei... 692 0.0 gi|342859552|ref|ZP_08716205.1| competence damage-inducible prot... 687 0.0 gi|296164924|ref|ZP_06847480.1| competence/damage-inducible prot... 685 0.0 gi|254775280|ref|ZP_05216796.1| competence damage-inducible prot... 684 0.0 gi|9789736|sp|Q9X7D6.2|CINAL_MYCLE RecName: Full=CinA-like protein 673 0.0 gi|15828092|ref|NP_302355.1| competence damage-inducible protein... 672 0.0 gi|120403981|ref|YP_953810.1| competence damage-inducible protei... 625 4e-177 gi|108799673|ref|YP_639870.1| competence damage-inducible protei... 618 7e-175 gi|126435317|ref|YP_001071008.1| competence damage-inducible pro... 616 3e-174 gi|333990628|ref|YP_004523242.1| competence/damage-inducible pro... 615 6e-174 gi|118468874|ref|YP_887816.1| competence damage-inducible protei... 607 1e-171 gi|189082539|sp|A0QY28.2|CINAL_MYCS2 RecName: Full=CinA-like pro... 606 2e-171 gi|145223867|ref|YP_001134545.1| competence damage-inducible pro... 589 3e-166 gi|284044697|ref|YP_003395037.1| competence/damage-inducible pro... 484 1e-134 gi|262204439|ref|YP_003275647.1| CinA domain-containing protein ... 456 3e-126 gi|169629529|ref|YP_001703178.1| competence damage-inducible pro... 445 6e-123 gi|326381798|ref|ZP_08203491.1| competence damage-inducible prot... 436 5e-120 gi|343927099|ref|ZP_08766585.1| CinA-like protein [Gordonia alka... 431 9e-119 gi|331695413|ref|YP_004331652.1| competence/damage-inducible pro... 388 1e-105 gi|339294836|gb|AEJ46947.1| competence damage-inducible protein ... 385 7e-105 gi|284988692|ref|YP_003407246.1| CinA domain-containing protein ... 383 4e-104 gi|339294835|gb|AEJ46946.1| competence damage-inducible protein ... 377 2e-102 gi|51892781|ref|YP_075472.1| competence damage-inducible protein... 267 3e-69 gi|302877133|ref|YP_003845766.1| competence/damage-inducible pro... 252 9e-65 gi|326203613|ref|ZP_08193477.1| competence/damage-inducible prot... 251 2e-64 gi|150020676|ref|YP_001306030.1| competence/damage-inducible pro... 243 5e-62 gi|220928125|ref|YP_002505034.1| competence/damage-inducible pro... 241 2e-61 gi|296132948|ref|YP_003640195.1| competence/damage-inducible pro... 240 3e-61 gi|322421554|ref|YP_004200777.1| competence/damage-inducible pro... 240 4e-61 gi|20807822|ref|NP_622993.1| competence damage-inducible protein... 238 2e-60 gi|217077078|ref|YP_002334794.1| competence/damage-inducible pro... 235 1e-59 gi|222528977|ref|YP_002572859.1| competence/damage-inducible pro... 235 1e-59 gi|153956017|ref|YP_001396782.1| competence damage-inducible pro... 234 2e-59 gi|312127955|ref|YP_003992829.1| competence/damage-inducible pro... 234 2e-59 gi|222100856|ref|YP_002535424.1| CinA-like protein [Thermotoga n... 234 2e-59 gi|344996612|ref|YP_004798955.1| competence/damage-inducible pro... 233 4e-59 gi|312793175|ref|YP_004026098.1| competence/damage-inducible pro... 233 4e-59 gi|197119989|ref|YP_002140416.1| competence/damage-inducible pro... 233 5e-59 gi|312622754|ref|YP_004024367.1| competence/damage-inducible pro... 231 1e-58 gi|300857068|ref|YP_003782052.1| putative competence-damage indu... 230 3e-58 >gi|15609038|ref|NP_216417.1| competence damage-inducible protein A [Mycobacterium tuberculosis H37Rv] gi|31793094|ref|NP_855587.1| competence damage-inducible protein A [Mycobacterium bovis AF2122/97] gi|121637807|ref|YP_978030.1| competence damage-inducible protein A [Mycobacterium bovis BCG str. Pasteur 1173P2] 75 more sequence titles Length=430 Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/430 (100%), Positives = 430/430 (100%), Gaps = 0/430 (0%) Query 1 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM 60 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM Sbjct 1 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM 60 Query 61 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEP 120 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEP Sbjct 61 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEP 120 Query 121 ANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQT 180 ANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQT Sbjct 121 ANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQT 180 Query 181 APVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVT 240 APVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVT Sbjct 181 APVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVT 240 Query 241 RFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAAR 300 RFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAAR Sbjct 241 RFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAAR 300 Query 301 LTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADT 360 LTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADT Sbjct 301 LTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADT 360 Query 361 ATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLR 420 ATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLR Sbjct 361 ATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLR 420 Query 421 RTLSGIPGSP 430 RTLSGIPGSP Sbjct 421 RTLSGIPGSP 430 >gi|15841372|ref|NP_336409.1| competence damage-inducible protein A [Mycobacterium tuberculosis CDC1551] gi|254232077|ref|ZP_04925404.1| cina-like protein cinA [Mycobacterium tuberculosis C] gi|308379066|ref|ZP_07484895.2| competence damage-inducible protein A cinA [Mycobacterium tuberculosis SUMu010] gi|13881606|gb|AAK46223.1| competence/damage-inducible protein CinA [Mycobacterium tuberculosis CDC1551] gi|124601136|gb|EAY60146.1| cina-like protein cinA [Mycobacterium tuberculosis C] gi|308358294|gb|EFP47145.1| competence damage-inducible protein A cinA [Mycobacterium tuberculosis SUMu010] Length=434 Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/430 (100%), Positives = 430/430 (100%), Gaps = 0/430 (0%) Query 1 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM 60 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM Sbjct 5 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM 64 Query 61 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEP 120 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEP Sbjct 65 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEP 124 Query 121 ANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQT 180 ANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQT Sbjct 125 ANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQT 184 Query 181 APVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVT 240 APVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVT Sbjct 185 APVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVT 244 Query 241 RFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAAR 300 RFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAAR Sbjct 245 RFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAAR 304 Query 301 LTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADT 360 LTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADT Sbjct 305 LTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADT 364 Query 361 ATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLR 420 ATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLR Sbjct 365 ATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLR 424 Query 421 RTLSGIPGSP 430 RTLSGIPGSP Sbjct 425 RTLSGIPGSP 434 >gi|340626910|ref|YP_004745362.1| putative CINA-like protein CINA [Mycobacterium canettii CIPT 140010059] gi|340005100|emb|CCC44249.1| putative CINA-like protein CINA [Mycobacterium canettii CIPT 140010059] Length=430 Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/430 (99%), Positives = 430/430 (100%), Gaps = 0/430 (0%) Query 1 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM 60 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM Sbjct 1 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM 60 Query 61 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEP 120 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEP Sbjct 61 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEP 120 Query 121 ANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQT 180 ANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQT Sbjct 121 ANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQT 180 Query 181 APVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVT 240 APVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVE+TTCLRRGEIEMVT Sbjct 181 APVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEVTTCLRRGEIEMVT 240 Query 241 RFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAAR 300 RFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAAR Sbjct 241 RFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAAR 300 Query 301 LTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADT 360 LTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADT Sbjct 301 LTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADT 360 Query 361 ATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLR 420 ATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLR Sbjct 361 ATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLR 420 Query 421 RTLSGIPGSP 430 RTLSGIPGSP Sbjct 421 RTLSGIPGSP 430 >gi|339298461|gb|AEJ50571.1| competence damage-inducible protein A [Mycobacterium tuberculosis CCDC5180] Length=428 Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/428 (99%), Positives = 428/428 (100%), Gaps = 0/428 (0%) Query 3 VSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 62 +SARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE Sbjct 1 MSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 60 Query 63 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPAN 122 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPAN Sbjct 61 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPAN 120 Query 123 FDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQTAP 182 FDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQTAP Sbjct 121 FDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQTAP 180 Query 183 VQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRF 242 VQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRF Sbjct 181 VQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRF 240 Query 243 EPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAARLT 302 EPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAARLT Sbjct 241 EPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAARLT 300 Query 303 DRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTAT 362 DRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTAT Sbjct 301 DRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTAT 360 Query 363 AITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLRRT 422 AITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLRRT Sbjct 361 AITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLRRT 420 Query 423 LSGIPGSP 430 LSGIPGSP Sbjct 421 LSGIPGSP 428 >gi|254822538|ref|ZP_05227539.1| competence damage-inducible protein A [Mycobacterium intracellulare ATCC 13950] Length=431 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/428 (83%), Positives = 391/428 (92%), Gaps = 4/428 (0%) Query 1 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM 60 MAVSARAGIV+TGTEVLTGRVQD NGPWIADRLLELGVELAHITICGDRPADIEAQLRF+ Sbjct 1 MAVSARAGIVVTGTEVLTGRVQDANGPWIADRLLELGVELAHITICGDRPADIEAQLRFL 60 Query 61 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPA--- 117 A+QGVDLIVTSGGLGPTADDMTVEVVAR+CGRELVLD E+E +IANILKKLMGRNPA Sbjct 61 ADQGVDLIVTSGGLGPTADDMTVEVVARFCGRELVLDAEVEEKIANILKKLMGRNPAFQS 120 Query 118 -IEPANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSK 176 ++P F+S+RAANRKQAMIPAG+QV+DPVGTAPG+VVPG+PAV+VLPGPPRELQP+W Sbjct 121 ALDPGTFESLRAANRKQAMIPAGAQVLDPVGTAPGVVVPGKPAVIVLPGPPRELQPMWHT 180 Query 177 AIQTAPVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEI 236 AIQT QDAIAGRT YRQE +R+FGLPES LA+TLRDAE +PGFD +EITTCLRRGEI Sbjct 181 AIQTPAAQDAIAGRTIYRQEMLRMFGLPESGLAETLRDAEKTVPGFDRLEITTCLRRGEI 240 Query 237 EMVTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGL 296 EMVTR+EP++A YTQL +LLR+RHGHQ+YSEDG+ VD+LVA+LLTG RIATAESCTAGL Sbjct 241 EMVTRYEPDSADAYTQLTKLLRERHGHQLYSEDGSRVDDLVAQLLTGHRIATAESCTAGL 300 Query 297 LAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGF 356 LAARLTDRPGSS YVAG VV+YSNEAKA++LGVDPALIE HGAVSEPVA+AMAAGALQ F Sbjct 301 LAARLTDRPGSSDYVAGGVVSYSNEAKAEVLGVDPALIEVHGAVSEPVAEAMAAGALQRF 360 Query 357 GADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAM 416 GADTA AITGIAGP GGT +KPVGTVCF+V + GRT TRT+RLPGNRSDIRERSTTVAM Sbjct 361 GADTAVAITGIAGPGGGTEDKPVGTVCFSVKVAGGRTDTRTLRLPGNRSDIRERSTTVAM 420 Query 417 HLLRRTLS 424 HLLRR L+ Sbjct 421 HLLRRLLA 428 >gi|183982802|ref|YP_001851093.1| competence/damage-inducible protein CinA [Mycobacterium marinum M] gi|238689225|sp|B2HDA1.1|CINAL_MYCMM RecName: Full=CinA-like protein gi|183176128|gb|ACC41238.1| competence/damage-inducible protein CinA [Mycobacterium marinum M] Length=425 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/424 (84%), Positives = 383/424 (91%), Gaps = 0/424 (0%) Query 1 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM 60 MAVSARAGIV+TGTEVLTGRVQDRNGPWIAD+LLELGVELAHITICGDRPADIEAQLRFM Sbjct 1 MAVSARAGIVVTGTEVLTGRVQDRNGPWIADQLLELGVELAHITICGDRPADIEAQLRFM 60 Query 61 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEP 120 A+Q +DLI+TSGGLGPTADDMTVEVVAR+CGREL+LD ELE+ IANILK+LM RNP +P Sbjct 61 ADQDLDLIITSGGLGPTADDMTVEVVARFCGRELILDAELEDTIANILKRLMARNPGFDP 120 Query 121 ANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQT 180 NFDS+RAAN+KQAMIPAG+QVI+PVGTAPGLVVPG+PAVMVLPGPPRELQP+W AIQ Sbjct 121 GNFDSVRAANQKQAMIPAGAQVINPVGTAPGLVVPGKPAVMVLPGPPRELQPMWHSAIQM 180 Query 181 APVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVT 240 Q+AIAGRTTYRQETIR+FGLPES LA+TLR AE IP F +EITTCLRRGEIEMVT Sbjct 181 PGAQEAIAGRTTYRQETIRMFGLPESGLAETLRSAETTIPDFGALEITTCLRRGEIEMVT 240 Query 241 RFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAAR 300 R+EP AA Y Q+ARLLRDRHG Q+YSEDG+ VD+LVA+LL RRIATAESCTAGLLAAR Sbjct 241 RYEPGAADTYAQVARLLRDRHGDQIYSEDGSQVDDLVARLLADRRIATAESCTAGLLAAR 300 Query 301 LTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADT 360 LTDRPGSS YV G VV+YSNEAKA+LLGVDPALIE HGAVSEPVAQAMAAGALQ FGADT Sbjct 301 LTDRPGSSGYVMGGVVSYSNEAKAELLGVDPALIEMHGAVSEPVAQAMAAGALQRFGADT 360 Query 361 ATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLR 420 A AITGIAGP GGT +KPVGTVCF VL+ DGR TRT+RLPGNRSDIRERSTTVAMHLLR Sbjct 361 AVAITGIAGPGGGTEQKPVGTVCFCVLVGDGRNVTRTLRLPGNRSDIRERSTTVAMHLLR 420 Query 421 RTLS 424 R LS Sbjct 421 RALS 424 >gi|41407723|ref|NP_960559.1| competence damage-inducible protein A [Mycobacterium avium subsp. paratuberculosis K-10] gi|62286551|sp|Q73ZH8.1|CINAL_MYCPA RecName: Full=CinA-like protein gi|41396076|gb|AAS03942.1| CinA [Mycobacterium avium subsp. paratuberculosis K-10] Length=434 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/432 (81%), Positives = 383/432 (89%), Gaps = 8/432 (1%) Query 1 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM 60 M VSARAGIV+TGTEVLTGRVQD NGPWIADRLLELGVELAHITICGDRP DIEAQLRF+ Sbjct 1 MPVSARAGIVVTGTEVLTGRVQDANGPWIADRLLELGVELAHITICGDRPHDIEAQLRFL 60 Query 61 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIE- 119 A+QGVDLIVTSGGLGPTADDMTVEVVAR+CGRELVLD E+E +IANILKKLM RNPAI+ Sbjct 61 ADQGVDLIVTSGGLGPTADDMTVEVVARFCGRELVLDAEVEEKIANILKKLMARNPAIQS 120 Query 120 ---PANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSK 176 P F+S+RAANRKQAM+PAG+QV+DPVGTAPG+VVPG+PAV+VLPGPPRELQP+W Sbjct 121 ALDPGTFESLRAANRKQAMVPAGAQVLDPVGTAPGVVVPGKPAVIVLPGPPRELQPMWHT 180 Query 177 AIQTAPVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEI 236 AIQT Q AIAGRT YRQE +R+FGLPES LA+TLR+AEAA+PGF +EITTCLRRGEI Sbjct 181 AIQTPAAQQAIAGRTVYRQEMLRMFGLPESGLAETLREAEAAVPGFGQLEITTCLRRGEI 240 Query 237 EMVTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGL 296 EMVTR+EP AA Y QL +LLRD+HG Q+YSEDG+ VD+LVA+LL GRRIATAESCTAGL Sbjct 241 EMVTRYEPTAATAYAQLTKLLRDKHGDQLYSEDGSRVDDLVARLLAGRRIATAESCTAGL 300 Query 297 LAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGF 356 LAARLTDRPGSS YVAG VVAYSNEAKA+LLGVDPALIEAHGAVSEPVAQAMAAGA Q F Sbjct 301 LAARLTDRPGSSDYVAGGVVAYSNEAKAELLGVDPALIEAHGAVSEPVAQAMAAGARQRF 360 Query 357 GADTATAITGIAGPSGGTPEKPVGTVCFTVLLD----DGRTTTRTVRLPGNRSDIRERST 412 ADTA AITGIAGP GGT EKPVGTVCF+V + R+ TRT+RLPGNRSDIRERST Sbjct 361 AADTAVAITGIAGPGGGTEEKPVGTVCFSVQVGPPGATARSDTRTMRLPGNRSDIRERST 420 Query 413 TVAMHLLRRTLS 424 TVAMHLLRR L+ Sbjct 421 TVAMHLLRRLLT 432 >gi|118618357|ref|YP_906689.1| competence damage-inducible protein A [Mycobacterium ulcerans Agy99] gi|118570467|gb|ABL05218.1| competence/damage-inducible protein CinA [Mycobacterium ulcerans Agy99] Length=429 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/422 (82%), Positives = 376/422 (90%), Gaps = 0/422 (0%) Query 3 VSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 62 VSARAGIV+TGTEVLTGRVQDRNGPWIAD+LLELGVELAHITICGDRPADI AQLRFMA+ Sbjct 7 VSARAGIVVTGTEVLTGRVQDRNGPWIADQLLELGVELAHITICGDRPADIGAQLRFMAD 66 Query 63 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPAN 122 Q +DLI+TSGGLGPTADDMTVEVVAR+CGREL+LD +LE+ IANILK+LM RNP +P N Sbjct 67 QDLDLIITSGGLGPTADDMTVEVVARFCGRELILDTKLEDTIANILKRLMARNPGFDPGN 126 Query 123 FDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQTAP 182 FDS+ AAN+KQAM+PAG+QVI+PVGTAPGLVVPG+PAV+VLPGPPRELQP+W AIQ Sbjct 127 FDSVLAANQKQAMVPAGAQVINPVGTAPGLVVPGKPAVVVLPGPPRELQPMWHSAIQMPG 186 Query 183 VQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRF 242 Q+AIAGRTTYRQETIR+FGLPES LA TLR AE IP F +EITTCLRRGEIEMVTR+ Sbjct 187 AQEAIAGRTTYRQETIRMFGLPESGLAATLRSAETTIPDFGALEITTCLRRGEIEMVTRY 246 Query 243 EPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAARLT 302 E AA Y Q+ARLLRDRHG Q+YSEDG+ VD+LVA+LL RRIATAESCTAGLLAARLT Sbjct 247 ELGAADTYAQVARLLRDRHGDQIYSEDGSQVDDLVARLLADRRIATAESCTAGLLAARLT 306 Query 303 DRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTAT 362 DRPGSS YV G VV+YSNEAKA+LLGVDPALIE HGAVSEPVAQAMAAGA Q FGADTA Sbjct 307 DRPGSSAYVMGGVVSYSNEAKAELLGVDPALIEMHGAVSEPVAQAMAAGAFQRFGADTAV 366 Query 363 AITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLRRT 422 AITGIAGP GGT +KPVGTVCF VL+ DGR TRT+RLPGNRSDIRERSTTVAMHLLRR Sbjct 367 AITGIAGPGGGTEQKPVGTVCFCVLVGDGRNVTRTLRLPGNRSDIRERSTTVAMHLLRRA 426 Query 423 LS 424 LS Sbjct 427 LS 428 >gi|336457383|gb|EGO36392.1| competence/damage-inducible protein CinA-like protein [Mycobacterium avium subsp. paratuberculosis S397] Length=432 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/430 (81%), Positives = 382/430 (89%), Gaps = 8/430 (1%) Query 3 VSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 62 +SARAGIV+TGTEVLTGRVQD NGPWIADRLLELGVELAHITICGDRP DIEAQLRF+A+ Sbjct 1 MSARAGIVVTGTEVLTGRVQDANGPWIADRLLELGVELAHITICGDRPHDIEAQLRFLAD 60 Query 63 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIE--- 119 QGVDLIVTSGGLGPTADDMTVEVVAR+CGRELVLD E+E +IANILKKLM RNPAI+ Sbjct 61 QGVDLIVTSGGLGPTADDMTVEVVARFCGRELVLDAEVEEKIANILKKLMARNPAIQSAL 120 Query 120 -PANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAI 178 P F+S+RAANRKQAM+PAG+QV+DPVGTAPG+VVPG+PAV+VLPGPPRELQP+W AI Sbjct 121 DPGTFESLRAANRKQAMVPAGAQVLDPVGTAPGVVVPGKPAVIVLPGPPRELQPMWHTAI 180 Query 179 QTAPVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEM 238 QT Q AIAGRT YRQE +R+FGLPES LA+TLR+AEAA+PGF +EITTCLRRGEIEM Sbjct 181 QTPAAQQAIAGRTVYRQEMLRMFGLPESGLAETLREAEAAVPGFGQLEITTCLRRGEIEM 240 Query 239 VTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLA 298 VTR+EP AA Y QL +LLRD+HG Q+YSEDG+ VD+LVA+LL GRRIATAESCTAGLLA Sbjct 241 VTRYEPTAATAYAQLTKLLRDKHGDQLYSEDGSRVDDLVARLLAGRRIATAESCTAGLLA 300 Query 299 ARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGA 358 ARLTDRPGSS YVAG VVAYSNEAKA+LLGVDPALIEAHGAVSEPVAQAMAAGA Q F A Sbjct 301 ARLTDRPGSSDYVAGGVVAYSNEAKAELLGVDPALIEAHGAVSEPVAQAMAAGARQRFAA 360 Query 359 DTATAITGIAGPSGGTPEKPVGTVCFTVLLD----DGRTTTRTVRLPGNRSDIRERSTTV 414 DTA AITGIAGP GGT EKPVGTVCF+V + R+ TRT+RLPGNRSDIRERSTTV Sbjct 361 DTAVAITGIAGPGGGTEEKPVGTVCFSVQVGPPGATARSDTRTMRLPGNRSDIRERSTTV 420 Query 415 AMHLLRRTLS 424 AMHLLRR L+ Sbjct 421 AMHLLRRLLT 430 >gi|240172576|ref|ZP_04751235.1| competence damage-inducible protein A [Mycobacterium kansasii ATCC 12478] Length=421 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/422 (81%), Positives = 380/422 (91%), Gaps = 3/422 (0%) Query 3 VSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 62 +SARAGIV+TGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRP DI+AQLRF+A+ Sbjct 1 MSARAGIVVTGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPGDIDAQLRFLAD 60 Query 63 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPAN 122 QGVDLIVTSGGLGPTADDMTVEVVAR+CGREL+LD +EN IANILKKLM + + Sbjct 61 QGVDLIVTSGGLGPTADDMTVEVVARFCGRELILDTAVENTIANILKKLMAH---FDQGD 117 Query 123 FDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQTAP 182 F+++RAANRKQAMIPAG+QV+DPVGTAPG+VVPG+PAV+VLPGPPRELQP+W KAIQT Sbjct 118 FEAVRAANRKQAMIPAGAQVLDPVGTAPGVVVPGKPAVIVLPGPPRELQPMWGKAIQTPA 177 Query 183 VQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRF 242 Q AIAGRTTY Q TIR+FGLPES LA+TLR A+ +IPG+D +EITTCLRRGEIEMVTR+ Sbjct 178 AQQAIAGRTTYHQATIRMFGLPESGLAETLRAAQTSIPGYDRLEITTCLRRGEIEMVTRY 237 Query 243 EPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAARLT 302 EP A VY QL +LLRD+HGHQ+YSEDG+ VD++VA++L GRRIATAESCTAGLL+ARLT Sbjct 238 EPPDADVYAQLTKLLRDKHGHQIYSEDGSQVDDVVARMLAGRRIATAESCTAGLLSARLT 297 Query 303 DRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTAT 362 DRPGSS YVAG +V YS++AK +LLG+D ALI HGAVSEPVAQAMAAGALQ FGADTA Sbjct 298 DRPGSSDYVAGGLVVYSDDAKTELLGIDAALIRTHGAVSEPVAQAMAAGALQRFGADTAV 357 Query 363 AITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLRRT 422 AITGIAGP GGT EKPVGTVCFTVLLDDGRT TRT+RLPGNRSDIRERSTTVAMHLLRRT Sbjct 358 AITGIAGPGGGTREKPVGTVCFTVLLDDGRTLTRTLRLPGNRSDIRERSTTVAMHLLRRT 417 Query 423 LS 424 LS Sbjct 418 LS 419 >gi|118465937|ref|YP_881987.1| competence damage-inducible protein A [Mycobacterium avium 104] gi|167008604|sp|A0QGE9.1|CINAL_MYCA1 RecName: Full=CinA-like protein gi|118167224|gb|ABK68121.1| competence damage-inducible protein A [Mycobacterium avium 104] Length=434 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/432 (80%), Positives = 381/432 (89%), Gaps = 8/432 (1%) Query 1 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM 60 M VSARAGIV+TGTEVLTGRVQD NGPWIADRLLELGVELAHITICGDRP DIEAQLRF+ Sbjct 1 MPVSARAGIVVTGTEVLTGRVQDANGPWIADRLLELGVELAHITICGDRPHDIEAQLRFL 60 Query 61 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPA--- 117 A+QGVDLIVTSGGLGPTADDMTVEVVAR+CGRELVLD E+E +IANILKKLM RNPA Sbjct 61 ADQGVDLIVTSGGLGPTADDMTVEVVARFCGRELVLDAEVEEKIANILKKLMARNPAFQS 120 Query 118 -IEPANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSK 176 ++P F+S+RAANRKQAM+PAG+QV+DPVGTAPG+VVPG+PAV+VLPGPPRELQP+W Sbjct 121 ALDPGTFESLRAANRKQAMVPAGAQVLDPVGTAPGVVVPGKPAVIVLPGPPRELQPMWHT 180 Query 177 AIQTAPVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEI 236 AIQT Q AIAGRT YRQE +R+FGLPES LA+TLR+AEAA+PGF +EITTCLRRGEI Sbjct 181 AIQTPAAQQAIAGRTVYRQEMLRMFGLPESGLAETLREAEAAVPGFGQLEITTCLRRGEI 240 Query 237 EMVTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGL 296 EMVTR+EP AA Y QL +LLRD+HG Q+YSEDG+ VD+LVA+LL GRRIATAESCTAGL Sbjct 241 EMVTRYEPTAATAYAQLTKLLRDKHGDQLYSEDGSRVDDLVARLLAGRRIATAESCTAGL 300 Query 297 LAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGF 356 LAARLTDRPGSS YVAG VVAYSNEAKA+LLGVDPALIE HGAVSEPVAQAMAAGA Q F Sbjct 301 LAARLTDRPGSSDYVAGGVVAYSNEAKAELLGVDPALIETHGAVSEPVAQAMAAGARQRF 360 Query 357 GADTATAITGIAGPSGGTPEKPVGTVCFTVLLD----DGRTTTRTVRLPGNRSDIRERST 412 ADTA AITGIAGP GGT EKPVGTVCF+V + R+ TRT+RLPGNR DIRERST Sbjct 361 AADTAVAITGIAGPGGGTEEKPVGTVCFSVQVGPPGATARSDTRTLRLPGNRLDIRERST 420 Query 413 TVAMHLLRRTLS 424 TVAMHLLRR L+ Sbjct 421 TVAMHLLRRLLT 432 >gi|342859552|ref|ZP_08716205.1| competence damage-inducible protein A [Mycobacterium colombiense CECT 3035] gi|342132684|gb|EGT85904.1| competence damage-inducible protein A [Mycobacterium colombiense CECT 3035] Length=428 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/425 (80%), Positives = 379/425 (90%), Gaps = 5/425 (1%) Query 3 VSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 62 +SARAGIV+TGTEVLTGRVQD NGPWIADRLLELGVELAHITICGDRP DIEAQLRF+A+ Sbjct 1 MSARAGIVVTGTEVLTGRVQDANGPWIADRLLELGVELAHITICGDRPGDIEAQLRFLAD 60 Query 63 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPA----I 118 QGVDLIVTSGGLGPTADDMTVEVVAR+CGRELVLD E+E +IA+IL+KLM RNPA + Sbjct 61 QGVDLIVTSGGLGPTADDMTVEVVARFCGRELVLDAEVEEKIADILRKLMARNPAFQSAL 120 Query 119 EPANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAI 178 +P F+S+RAANRKQAM+PAG+QV+DPVGTAPG+VVPG P V+VLPGPPRELQP+W AI Sbjct 121 DPGTFESLRAANRKQAMVPAGAQVLDPVGTAPGVVVPGAPTVIVLPGPPRELQPMWHTAI 180 Query 179 QTAPVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEM 238 T QDAIAGRT YRQE +R+FGLPES LA+TLRDAE A+PGF +EITTCLRRGEIEM Sbjct 181 ATPGAQDAIAGRTVYRQEMLRMFGLPESGLAETLRDAERAVPGFGQLEITTCLRRGEIEM 240 Query 239 VTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLA 298 VTR+EP+AA Y QL +LLR+RHGHQ+YSEDG+ VD+LVA+LL G RIATAESCTAGLLA Sbjct 241 VTRYEPDAADAYAQLVKLLRERHGHQLYSEDGSRVDDLVAQLLAGHRIATAESCTAGLLA 300 Query 299 ARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGA 358 ARLTDR GSS YVAG VV+YSNEAK +LLGVDPALI+AHGAVSEPVA+AMAAGALQ FGA Sbjct 301 ARLTDRAGSSDYVAGGVVSYSNEAKTELLGVDPALIQAHGAVSEPVAEAMAAGALQRFGA 360 Query 359 DTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHL 418 DTA AITGIAGP GGT EKPVGTVCF+V GRT TRT+RLPGNRSD+RERSTTVAMHL Sbjct 361 DTAVAITGIAGPGGGTEEKPVGTVCFSVTA-GGRTDTRTLRLPGNRSDVRERSTTVAMHL 419 Query 419 LRRTL 423 LRR L Sbjct 420 LRRLL 424 >gi|296164924|ref|ZP_06847480.1| competence/damage-inducible protein CinA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899766|gb|EFG79216.1| competence/damage-inducible protein CinA [Mycobacterium parascrofulaceum ATCC BAA-614] Length=427 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/429 (80%), Positives = 383/429 (90%), Gaps = 7/429 (1%) Query 1 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM 60 M VSARAGIV+TGTEVLTGRVQD NGPWIADRLLELGVELAHITICGDRPADIEAQLRF+ Sbjct 1 MPVSARAGIVVTGTEVLTGRVQDANGPWIADRLLELGVELAHITICGDRPADIEAQLRFL 60 Query 61 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEP 120 A+QG+DLIVTSGGLGPTADDMTVEVVAR+CGRELVLD+E EN+IA+ILKKLM R E Sbjct 61 ADQGMDLIVTSGGLGPTADDMTVEVVARFCGRELVLDEETENKIADILKKLMAR---FEG 117 Query 121 ANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAV----MVLPGPPRELQPIWSK 176 A+F+++RAANRKQAMIPAGSQV+DPVGTAPG+VVPG P V +VLPGPPRELQP+W + Sbjct 118 ADFEAVRAANRKQAMIPAGSQVLDPVGTAPGVVVPGTPTVTPTVIVLPGPPRELQPMWRR 177 Query 177 AIQTAPVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEI 236 AI+T Q AIAGRT YRQET R+FGLPES LA+TLRDAE +PGF+ +EITTCLRRGE+ Sbjct 178 AIETPAAQQAIAGRTLYRQETARMFGLPESGLAETLRDAETLVPGFESLEITTCLRRGEV 237 Query 237 EMVTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGL 296 EMVTR+EP+AA Y +L +L+R+RH Q++SEDG++VD+LVA+ L GRRIATAESCTAG+ Sbjct 238 EMVTRYEPDAAASYDKLMQLMRERHSAQLFSEDGSTVDDLVARALAGRRIATAESCTAGM 297 Query 297 LAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGF 356 LAARLTDRPGSS YV+G VVAYSNEAKA+LLGVDPALI+AHGAVSEPVA+AMAAGAL+ F Sbjct 298 LAARLTDRPGSSDYVSGGVVAYSNEAKAELLGVDPALIDAHGAVSEPVAEAMAAGALRRF 357 Query 357 GADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAM 416 GADTA AITGIAGP GGT EKPVGTVCFTV L DGR TRT+RLPGNRSDIRERSTTVAM Sbjct 358 GADTAVAITGIAGPGGGTDEKPVGTVCFTVALADGRKDTRTLRLPGNRSDIRERSTTVAM 417 Query 417 HLLRRTLSG 425 HLLRR L G Sbjct 418 HLLRRALGG 426 >gi|254775280|ref|ZP_05216796.1| competence damage-inducible protein A [Mycobacterium avium subsp. avium ATCC 25291] Length=438 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/424 (81%), Positives = 376/424 (89%), Gaps = 8/424 (1%) Query 1 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM 60 M VSARAGIV+TGTEVLTGRVQD NGPWIADRLLELGVELAHITICGDRP DIEAQLRF+ Sbjct 1 MPVSARAGIVVTGTEVLTGRVQDANGPWIADRLLELGVELAHITICGDRPHDIEAQLRFL 60 Query 61 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPA--- 117 A+QGVDLIVTSGGLGPTADDMTVEVVAR+CGRELVLD E+E +IANILKKLM RNPA Sbjct 61 ADQGVDLIVTSGGLGPTADDMTVEVVARFCGRELVLDAEVEEKIANILKKLMARNPAFQS 120 Query 118 -IEPANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSK 176 ++P F+S+RAANRKQAM+PAG+QV+DPVGTAPG+VVPG+PAV+VLPGPPRELQP+W Sbjct 121 ALDPGTFESLRAANRKQAMVPAGAQVLDPVGTAPGVVVPGKPAVIVLPGPPRELQPMWHT 180 Query 177 AIQTAPVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEI 236 AIQT Q AIAGRT YRQE +RIFGLPES LA+TLR+AEAA+PGF +EITTCLRRGEI Sbjct 181 AIQTPAAQQAIAGRTVYRQEMLRIFGLPESGLAETLREAEAAVPGFGQLEITTCLRRGEI 240 Query 237 EMVTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGL 296 EMVTR+EP AA Y QL +LLRD+HG Q+YSEDG+ VD+LVA+LL GRRIATAESCTAGL Sbjct 241 EMVTRYEPTAATAYAQLTKLLRDKHGDQLYSEDGSRVDDLVARLLAGRRIATAESCTAGL 300 Query 297 LAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGF 356 LAARLTDRPGSS YVAG VVAYSNEAKA+LLGVDPALIEAHGAVSEPVAQAMAAGA Q F Sbjct 301 LAARLTDRPGSSDYVAGGVVAYSNEAKAELLGVDPALIEAHGAVSEPVAQAMAAGARQRF 360 Query 357 GADTATAITGIAGPSGGTPEKPVGTVCFTVLLD----DGRTTTRTVRLPGNRSDIRERST 412 ADTA AITGIAGP GGT EKPVGTVCF+V + R+ TRT+RLPGNRSDIRERST Sbjct 361 AADTAVAITGIAGPGGGTEEKPVGTVCFSVQVGPPGATARSDTRTLRLPGNRSDIRERST 420 Query 413 TVAM 416 TVAM Sbjct 421 TVAM 424 >gi|9789736|sp|Q9X7D6.2|CINAL_MYCLE RecName: Full=CinA-like protein Length=428 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/431 (78%), Positives = 373/431 (87%), Gaps = 4/431 (0%) Query 1 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM 60 M VSARAGIV+TGTE+LTGRV+DRNGPW+ADRLLELGV+LAHITICGD PADIEAQLRFM Sbjct 1 MVVSARAGIVVTGTEILTGRVRDRNGPWLADRLLELGVKLAHITICGDCPADIEAQLRFM 60 Query 61 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEP 120 AE GVDLIVTSGGLGPTADDMTVEVVAR+C RE+VLD ELEN+IA IL LM R P Sbjct 61 AEAGVDLIVTSGGLGPTADDMTVEVVARFCNREMVLDVELENKIAAILNSLMTR---FNP 117 Query 121 ANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQT 180 +F+++RAANRKQAMIPAGSQV+DP+GTAPGLVVPG+P VMVLPGPP ELQP+W +A+ T Sbjct 118 GDFEAVRAANRKQAMIPAGSQVLDPIGTAPGLVVPGKPTVMVLPGPPSELQPMWRRAVMT 177 Query 181 APVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVT 240 A ++AIA RT YRQ+T+R+FGL ES LA+TLRDA+A+IPGFD +EITTCLRRGEIEMVT Sbjct 178 AATREAIADRTIYRQQTLRMFGLSESGLAETLRDAQASIPGFDALEITTCLRRGEIEMVT 237 Query 241 RFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAAR 300 R+EP+ VY +L +LLRDRHGHQ+YSEDGA VD+L+A LL GRRIATAESCTAGLLAAR Sbjct 238 RYEPDVVNVYVELTQLLRDRHGHQLYSEDGARVDDLIAHLLAGRRIATAESCTAGLLAAR 297 Query 301 LTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADT 360 LT+RPGSS YVAGA+VAYSNEAK LLGVDPALI HG VSEPV +AMAAGALQ F DT Sbjct 298 LTERPGSSDYVAGALVAYSNEAKVTLLGVDPALIAEHGEVSEPVVEAMAAGALQRFDVDT 357 Query 361 ATAITGIAGPSGGTPEKPVGTVCFTVLL-DDGRTTTRTVRLPGNRSDIRERSTTVAMHLL 419 A AI+GIAGP GGT EKP+GTVCFTV+L D G T TRT+RLPGNRSDIRERSTTVAMHLL Sbjct 358 AAAISGIAGPGGGTAEKPIGTVCFTVMLADGGPTLTRTLRLPGNRSDIRERSTTVAMHLL 417 Query 420 RRTLSGIPGSP 430 R LS P Sbjct 418 RHALSDTDSVP 428 >gi|15828092|ref|NP_302355.1| competence damage-inducible protein A [Mycobacterium leprae TN] gi|221230569|ref|YP_002503985.1| competence damage-inducible protein A [Mycobacterium leprae Br4923] gi|4582352|emb|CAB40299.1| hypothetical protein MLCB561.17 [Mycobacterium leprae] gi|13093646|emb|CAC30970.1| competence damage protein homolog [Mycobacterium leprae] gi|219933676|emb|CAR72112.1| competence damage protein homolog [Mycobacterium leprae Br4923] Length=432 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/431 (78%), Positives = 373/431 (87%), Gaps = 4/431 (0%) Query 1 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM 60 M VSARAGIV+TGTE+LTGRV+DRNGPW+ADRLLELGV+LAHITICGD PADIEAQLRFM Sbjct 5 MVVSARAGIVVTGTEILTGRVRDRNGPWLADRLLELGVKLAHITICGDCPADIEAQLRFM 64 Query 61 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEP 120 AE GVDLIVTSGGLGPTADDMTVEVVAR+C RE+VLD ELEN+IA IL LM R P Sbjct 65 AEAGVDLIVTSGGLGPTADDMTVEVVARFCNREMVLDVELENKIAAILNSLMTR---FNP 121 Query 121 ANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQT 180 +F+++RAANRKQAMIPAGSQV+DP+GTAPGLVVPG+P VMVLPGPP ELQP+W +A+ T Sbjct 122 GDFEAVRAANRKQAMIPAGSQVLDPIGTAPGLVVPGKPTVMVLPGPPSELQPMWRRAVMT 181 Query 181 APVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVT 240 A ++AIA RT YRQ+T+R+FGL ES LA+TLRDA+A+IPGFD +EITTCLRRGEIEMVT Sbjct 182 AATREAIADRTIYRQQTLRMFGLSESGLAETLRDAQASIPGFDALEITTCLRRGEIEMVT 241 Query 241 RFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAAR 300 R+EP+ VY +L +LLRDRHGHQ+YSEDGA VD+L+A LL GRRIATAESCTAGLLAAR Sbjct 242 RYEPDVVNVYVELTQLLRDRHGHQLYSEDGARVDDLIAHLLAGRRIATAESCTAGLLAAR 301 Query 301 LTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADT 360 LT+RPGSS YVAGA+VAYSNEAK LLGVDPALI HG VSEPV +AMAAGALQ F DT Sbjct 302 LTERPGSSDYVAGALVAYSNEAKVTLLGVDPALIAEHGEVSEPVVEAMAAGALQRFDVDT 361 Query 361 ATAITGIAGPSGGTPEKPVGTVCFTVLL-DDGRTTTRTVRLPGNRSDIRERSTTVAMHLL 419 A AI+GIAGP GGT EKP+GTVCFTV+L D G T TRT+RLPGNRSDIRERSTTVAMHLL Sbjct 362 AAAISGIAGPGGGTAEKPIGTVCFTVMLADGGPTLTRTLRLPGNRSDIRERSTTVAMHLL 421 Query 420 RRTLSGIPGSP 430 R LS P Sbjct 422 RHALSDTDSVP 432 >gi|120403981|ref|YP_953810.1| competence damage-inducible protein A [Mycobacterium vanbaalenii PYR-1] gi|189082423|sp|A1T9F4.1|CINAL_MYCVP RecName: Full=CinA-like protein gi|119956799|gb|ABM13804.1| competence/damage-inducible protein cinA [Mycobacterium vanbaalenii PYR-1] Length=422 Score = 625 bits (1613), Expect = 4e-177, Method: Compositional matrix adjust. Identities = 309/423 (74%), Positives = 354/423 (84%), Gaps = 3/423 (0%) Query 3 VSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 62 +SARAGIV+TGTEVLTGRVQD+NGPW+ADRLLELGVEL HIT+CGDRPADIEAQLRF+A Sbjct 1 MSARAGIVVTGTEVLTGRVQDQNGPWLADRLLELGVELGHITLCGDRPADIEAQLRFLAG 60 Query 63 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPAN 122 QGVDLI+TSGGLGPTADDMTVE+V+R+CGRELVLD +E RI I+K +M R P ++ Sbjct 61 QGVDLIITSGGLGPTADDMTVEIVSRFCGRELVLDAAVEARIGEIVKGMMARFPGVDA-- 118 Query 123 FDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQTAP 182 D++ AANRKQA++PAG+ V+DPVGTAPG+VV G P V+VLPGPPRELQP+W A+ T Sbjct 119 -DAVLAANRKQALVPAGAVVLDPVGTAPGVVVAGSPTVVVLPGPPRELQPMWHAAVATDA 177 Query 183 VQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRF 242 VQ AIAGRT Y+Q+TIR+FGLPES LADTLRDAE + FD +EITTCLRRGE+E+VTRF Sbjct 178 VQTAIAGRTRYQQQTIRMFGLPESGLADTLRDAEKTVADFDRLEITTCLRRGELEIVTRF 237 Query 243 EPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAARLT 302 EP Y L LLRDRH +++S DGA VD+ +A+LL GR IATAESCTAG+LAARLT Sbjct 238 EPRDTATYAALEGLLRDRHAREIFSTDGALVDDQIAELLAGRSIATAESCTAGMLAARLT 297 Query 303 DRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTAT 362 +R GSS YVAG VVAYSN AK +LLGVD LIE HGAVSEPVA+AMAAGALQ FGADTA Sbjct 298 ERAGSSAYVAGGVVAYSNAAKTELLGVDAGLIERHGAVSEPVAEAMAAGALQRFGADTAV 357 Query 363 AITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLRRT 422 AITGIAGP GGTP KPVGTVCF+V L G + TR RLPGNRSDIRERSTTVAMHLLRR Sbjct 358 AITGIAGPGGGTPTKPVGTVCFSVALAGGASVTRATRLPGNRSDIRERSTTVAMHLLRRA 417 Query 423 LSG 425 L+G Sbjct 418 LTG 420 >gi|108799673|ref|YP_639870.1| competence damage-inducible protein A [Mycobacterium sp. MCS] gi|119868783|ref|YP_938735.1| competence damage-inducible protein A [Mycobacterium sp. KMS] gi|123369221|sp|Q1B8H0.1|CINAL_MYCSS RecName: Full=CinA-like protein gi|189082422|sp|A1UGI7.1|CINAL_MYCSK RecName: Full=CinA-like protein gi|108770092|gb|ABG08814.1| competence/damage-inducible protein cinA [Mycobacterium sp. MCS] gi|119694872|gb|ABL91945.1| competence/damage-inducible protein cinA [Mycobacterium sp. KMS] Length=421 Score = 618 bits (1593), Expect = 7e-175, Method: Compositional matrix adjust. Identities = 307/422 (73%), Positives = 354/422 (84%), Gaps = 3/422 (0%) Query 3 VSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 62 +SARAGIV+TGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRF+A Sbjct 1 MSARAGIVVTGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFLAA 60 Query 63 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPAN 122 +GVDLIVTSGGLGPTADD+TV VAR+CGREL+LD ELE RIA+IL++LMGR + + Sbjct 61 EGVDLIVTSGGLGPTADDLTVATVARFCGRELILDTELEQRIADILRRLMGRRTDV---D 117 Query 123 FDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQTAP 182 FD++RAANRKQAM+P G+ V++PVGTAPG+VVPG P V+VLPGPPRELQP+W A+QT Sbjct 118 FDALRAANRKQAMVPDGATVLEPVGTAPGVVVPGSPTVLVLPGPPRELQPMWRTAVQTEA 177 Query 183 VQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRF 242 ++ AIAGRT YRQ+ +R+FGLPES LA+TLRDAE + GFD +EITTCLRRGE+E+VTR+ Sbjct 178 LRSAIAGRTEYRQDMVRMFGLPESGLAETLRDAERDLAGFDRLEITTCLRRGELEIVTRY 237 Query 243 EPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAARLT 302 EP+A VY L LLRDRHG ++SEDG+ VD+ VA LL G IATAESCT G+L+ARLT Sbjct 238 EPDAEPVYRNLLTLLRDRHGSAIFSEDGSLVDDQVAALLAGHTIATAESCTGGMLSARLT 297 Query 303 DRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTAT 362 DR GSS YVAGA V Y++ AK +LLGV LI HGAVSEPVA+AMA GAL+ FGAD A Sbjct 298 DRAGSSAYVAGAAVCYADAAKVELLGVPADLIADHGAVSEPVAEAMADGALRRFGADVAV 357 Query 363 AITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLRRT 422 AITGIAGP GGT KPVGTVCF V DGR TRTVRLPG+RSD+RERSTTVAMHLLRR Sbjct 358 AITGIAGPGGGTELKPVGTVCFCVRRADGRVVTRTVRLPGDRSDVRERSTTVAMHLLRRA 417 Query 423 LS 424 L Sbjct 418 LQ 419 >gi|126435317|ref|YP_001071008.1| competence damage-inducible protein A [Mycobacterium sp. JLS] gi|189082421|sp|A3Q040.1|CINAL_MYCSJ RecName: Full=CinA-like protein gi|126235117|gb|ABN98517.1| competence/damage-inducible protein cinA [Mycobacterium sp. JLS] Length=421 Score = 616 bits (1588), Expect = 3e-174, Method: Compositional matrix adjust. Identities = 305/422 (73%), Positives = 354/422 (84%), Gaps = 3/422 (0%) Query 3 VSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 62 +SARAGI++TGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRF+A Sbjct 1 MSARAGIIVTGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFLAA 60 Query 63 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPAN 122 +GVDLIVTSGGLGPTADD+TV VAR+CGREL+LD ELE RIA+IL++LMGR + + Sbjct 61 EGVDLIVTSGGLGPTADDLTVATVARFCGRELILDTELEQRIADILRRLMGRRTDV---D 117 Query 123 FDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQTAP 182 FD++RAANRKQAM+P G+ V++PVGTAPG+VVPG P V+VLPGPPRELQP+W A+QT Sbjct 118 FDALRAANRKQAMVPDGATVLEPVGTAPGVVVPGSPTVLVLPGPPRELQPMWRTAVQTEA 177 Query 183 VQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRF 242 ++ AIAGRT YRQ+ +R+FGLPES LA+TLRDAE + GFD +EITTCLRRGE+E+VTR+ Sbjct 178 LRSAIAGRTEYRQDMVRMFGLPESGLAETLRDAERDLAGFDRLEITTCLRRGELEIVTRY 237 Query 243 EPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAARLT 302 EP+A VY L LLRDRHG ++SEDG+ VD+ VA LL G IATAESCT G+L+ARLT Sbjct 238 EPDAEPVYRNLLTLLRDRHGSAIFSEDGSLVDDQVAALLAGHTIATAESCTGGMLSARLT 297 Query 303 DRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTAT 362 +R GSS YVAGA V Y++ AK +LLGV LI HGAVSEPVA+AMA GAL+ FGAD A Sbjct 298 ERAGSSAYVAGAAVCYADAAKVELLGVPADLIADHGAVSEPVAEAMADGALRRFGADVAV 357 Query 363 AITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLRRT 422 AITGIAGP GGT KPVGTVCF V DGR TRTVRLPG+RSD+RERSTTVAMHLLRR Sbjct 358 AITGIAGPGGGTELKPVGTVCFCVRRADGRVVTRTVRLPGDRSDVRERSTTVAMHLLRRA 417 Query 423 LS 424 L Sbjct 418 LQ 419 >gi|333990628|ref|YP_004523242.1| competence/damage-inducible protein CinA [Mycobacterium sp. JDM601] gi|333486596|gb|AEF35988.1| competence/damage-inducible protein CinA [Mycobacterium sp. JDM601] Length=424 Score = 615 bits (1585), Expect = 6e-174, Method: Compositional matrix adjust. Identities = 306/422 (73%), Positives = 354/422 (84%), Gaps = 0/422 (0%) Query 3 VSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 62 +SARAGIV+TGTEVLTGR+ DRNGPW+ADRLLELGVELAHITICGDRP DIEAQLRF+A Sbjct 1 MSARAGIVVTGTEVLTGRIADRNGPWLADRLLELGVELAHITICGDRPRDIEAQLRFLAG 60 Query 63 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPAN 122 +GVDLI+TSGGLGPTADD+TV+ VAR+CGR++VLD LE RIA I+K LM R + Sbjct 61 EGVDLIITSGGLGPTADDLTVDTVARFCGRDVVLDAALEARIAEIIKPLMARFTGPGAPD 120 Query 123 FDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQTAP 182 F ++RAANRKQA+IPAGS V+DPVGTAPG+VVPG P V+VLPGPPRELQP+W KAI T Sbjct 121 FATVRAANRKQALIPAGSTVLDPVGTAPGVVVPGAPTVVVLPGPPRELQPMWHKAIGTPE 180 Query 183 VQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRF 242 VQ AIAGRT Y Q+T+R+FGLPES LADTLR A+ I F +EITTCLR GE+E+VTR+ Sbjct 181 VQQAIAGRTRYEQQTVRMFGLPESGLADTLRHAQQVIADFVRLEITTCLRGGELEIVTRY 240 Query 243 EPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAARLT 302 EP+AA Y QL +LR+RH ++SEDG+ +D+LVA LL GR IATAESCTAGLLA RL Sbjct 241 EPDAAAAYGQLLAVLRERHARAIFSEDGSRIDDLVAGLLAGRWIATAESCTAGLLAGRLA 300 Query 303 DRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTAT 362 D PG+S Y+AG VV+YSN+AKA LLGVDPALI HGAVSEPVA+AMAAGAL+ F ADTA Sbjct 301 DPPGASDYLAGGVVSYSNDAKADLLGVDPALIAEHGAVSEPVAEAMAAGALRRFAADTAV 360 Query 363 AITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLRRT 422 AITGIAGP GGTP+KPVGTVCF+V L DG TRT RLPG+R+D+RERSTTVAMHLLRR Sbjct 361 AITGIAGPGGGTPDKPVGTVCFSVALGDGTLLTRTTRLPGDRADVRERSTTVAMHLLRRA 420 Query 423 LS 424 LS Sbjct 421 LS 422 >gi|118468874|ref|YP_887816.1| competence damage-inducible protein A [Mycobacterium smegmatis str. MC2 155] gi|118170161|gb|ABK71057.1| competence damage-inducible protein A [Mycobacterium smegmatis str. MC2 155] Length=430 Score = 607 bits (1564), Expect = 1e-171, Method: Compositional matrix adjust. Identities = 305/427 (72%), Positives = 358/427 (84%), Gaps = 7/427 (1%) Query 3 VSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 62 VSARAGIVITGTEVLTGR+QD NGPW+AD+LLELGVELAHITICGDRP DI AQL+F+A+ Sbjct 4 VSARAGIVITGTEVLTGRIQDLNGPWLADQLLELGVELAHITICGDRPGDIAAQLKFLAD 63 Query 63 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLM-GRNPAIEPA 121 +GVDLI+TSGGLGPTADD+TV VA +CGRELVLD+ LE RIA IL++L GRN + E Sbjct 64 EGVDLIITSGGLGPTADDLTVATVAEFCGRELVLDEALEERIAAILRRLTAGRNLSEE-- 121 Query 122 NFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPA---VMVLPGPPRELQPIWSKAI 178 NF+++R ANRKQA+IP G+++++PVGTAPG+VVPG P V+VLPGPPRELQP+W +A+ Sbjct 122 NFEAVRTANRKQALIPQGAEILEPVGTAPGVVVPGSPGSPTVVVLPGPPRELQPMWLRAV 181 Query 179 QTAPVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEM 238 T PV+ AIAGRT YRQE IR+FGL ES LA+TLR AE AI GFD +EITTCLRRGE+E+ Sbjct 182 DTEPVRRAIAGRTVYRQEMIRMFGLAESGLAETLRAAEQAISGFDRLEITTCLRRGELEI 241 Query 239 VTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLA 298 VTR+EP AA Y QL +LRDRHG VYSEDG++VD+ VA LL GRRIATAESCTAGLLA Sbjct 242 VTRYEPAAADAYGQLLDVLRDRHGDAVYSEDGSTVDQQVAALLAGRRIATAESCTAGLLA 301 Query 299 ARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGA 358 ARLTD+PG+S+Y+ G +VAY+N KA++L VDP LI HGAVSEPVA+AMA GA+ F A Sbjct 302 ARLTDQPGASEYMMGGIVAYANTPKAEMLNVDPVLIAEHGAVSEPVAEAMATGAMHHFEA 361 Query 359 DTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHL 418 DTA AITGIAGP GG+ EKPVGTVCF V +G + TRT+ LPGNRSDIRERSTTVAMHL Sbjct 362 DTAVAITGIAGPGGGSTEKPVGTVCFAVRA-EGASITRTLLLPGNRSDIRERSTTVAMHL 420 Query 419 LRRTLSG 425 LRR L G Sbjct 421 LRRALRG 427 >gi|189082539|sp|A0QY28.2|CINAL_MYCS2 RecName: Full=CinA-like protein Length=427 Score = 606 bits (1563), Expect = 2e-171, Method: Compositional matrix adjust. Identities = 304/427 (72%), Positives = 358/427 (84%), Gaps = 7/427 (1%) Query 3 VSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 62 +SARAGIVITGTEVLTGR+QD NGPW+AD+LLELGVELAHITICGDRP DI AQL+F+A+ Sbjct 1 MSARAGIVITGTEVLTGRIQDLNGPWLADQLLELGVELAHITICGDRPGDIAAQLKFLAD 60 Query 63 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLM-GRNPAIEPA 121 +GVDLI+TSGGLGPTADD+TV VA +CGRELVLD+ LE RIA IL++L GRN + E Sbjct 61 EGVDLIITSGGLGPTADDLTVATVAEFCGRELVLDEALEERIAAILRRLTAGRNLSEE-- 118 Query 122 NFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPA---VMVLPGPPRELQPIWSKAI 178 NF+++R ANRKQA+IP G+++++PVGTAPG+VVPG P V+VLPGPPRELQP+W +A+ Sbjct 119 NFEAVRTANRKQALIPQGAEILEPVGTAPGVVVPGSPGSPTVVVLPGPPRELQPMWLRAV 178 Query 179 QTAPVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEM 238 T PV+ AIAGRT YRQE IR+FGL ES LA+TLR AE AI GFD +EITTCLRRGE+E+ Sbjct 179 DTEPVRRAIAGRTVYRQEMIRMFGLAESGLAETLRAAEQAISGFDRLEITTCLRRGELEI 238 Query 239 VTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLA 298 VTR+EP AA Y QL +LRDRHG VYSEDG++VD+ VA LL GRRIATAESCTAGLLA Sbjct 239 VTRYEPAAADAYGQLLDVLRDRHGDAVYSEDGSTVDQQVAALLAGRRIATAESCTAGLLA 298 Query 299 ARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGA 358 ARLTD+PG+S+Y+ G +VAY+N KA++L VDP LI HGAVSEPVA+AMA GA+ F A Sbjct 299 ARLTDQPGASEYMMGGIVAYANTPKAEMLNVDPVLIAEHGAVSEPVAEAMATGAMHHFEA 358 Query 359 DTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHL 418 DTA AITGIAGP GG+ EKPVGTVCF V +G + TRT+ LPGNRSDIRERSTTVAMHL Sbjct 359 DTAVAITGIAGPGGGSTEKPVGTVCFAVRA-EGASITRTLLLPGNRSDIRERSTTVAMHL 417 Query 419 LRRTLSG 425 LRR L G Sbjct 418 LRRALRG 424 >gi|145223867|ref|YP_001134545.1| competence damage-inducible protein A [Mycobacterium gilvum PYR-GCK] gi|315444196|ref|YP_004077075.1| competence/damage-inducible protein cinA [Mycobacterium sp. Spyr1] gi|189082395|sp|A4TAK5.1|CINAL_MYCGI RecName: Full=CinA-like protein gi|145216353|gb|ABP45757.1| competence/damage-inducible protein cinA [Mycobacterium gilvum PYR-GCK] gi|315262499|gb|ADT99240.1| competence/damage-inducible protein cinA [Mycobacterium sp. Spyr1] Length=422 Score = 589 bits (1518), Expect = 3e-166, Method: Compositional matrix adjust. Identities = 308/423 (73%), Positives = 356/423 (85%), Gaps = 3/423 (0%) Query 3 VSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 62 +SARAGIV+TGTEVLTGRVQD NGPW+ADRLLELGVEL+HIT+CGDRPADIEAQLRF+A+ Sbjct 1 MSARAGIVVTGTEVLTGRVQDLNGPWLADRLLELGVELSHITLCGDRPADIEAQLRFLAD 60 Query 63 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPAN 122 QGVDLI+TSGGLGPTADDMTVEVV+R+CGREL LD LE RI I+ +LM R P ++PA Sbjct 61 QGVDLIITSGGLGPTADDMTVEVVSRFCGRELELDPGLETRIGEIVTRLMARFPDVDPA- 119 Query 123 FDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQTAP 182 ++ AANRKQA +P G+ ++DPVGTAPG+VVPG P V+VLPGPPRELQP+W A+ Sbjct 120 --AVIAANRKQAFVPDGAVILDPVGTAPGVVVPGTPTVVVLPGPPRELQPMWQAAVAADA 177 Query 183 VQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRF 242 VQ AIA R +YRQ+T+R+FGLPES LA+TLR+AE ++ GFD +EITTCLRRGE+E+VTR+ Sbjct 178 VQTAIADRVSYRQDTVRMFGLPESGLAETLREAEGSVAGFDRLEITTCLRRGELEIVTRY 237 Query 243 EPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAARLT 302 EP A Y L +LRD+H +++SEDGA VD+ VA LL GR IATAESCTAGLLAARLT Sbjct 238 EPRDADAYDGLLNMLRDKHSRELFSEDGALVDDQVAALLAGRTIATAESCTAGLLAARLT 297 Query 303 DRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTAT 362 DR GSS YVAG VV+YSN+AK LLGVD LI AHGAVSEPVA+AMAAGALQ FGADTA Sbjct 298 DRAGSSAYVAGGVVSYSNDAKTDLLGVDAELIAAHGAVSEPVAEAMAAGALQRFGADTAV 357 Query 363 AITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLRRT 422 AITGIAGP GGTP KPVGTVCF+V L DG TRT +LPGNRSD+RERSTTVAMHLLRR Sbjct 358 AITGIAGPGGGTPAKPVGTVCFSVALADGTFLTRTSQLPGNRSDVRERSTTVAMHLLRRA 417 Query 423 LSG 425 LSG Sbjct 418 LSG 420 >gi|284044697|ref|YP_003395037.1| competence/damage-inducible protein CinA [Conexibacter woesei DSM 14684] gi|283948918|gb|ADB51662.1| competence/damage-inducible protein CinA [Conexibacter woesei DSM 14684] Length=447 Score = 484 bits (1246), Expect = 1e-134, Method: Compositional matrix adjust. Identities = 257/438 (59%), Positives = 318/438 (73%), Gaps = 13/438 (2%) Query 3 VSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 62 +SARAGIV+TGTEVL+G + DRNGPW+++RL E+GV+ A ITI GDRP D++A LRF AE Sbjct 1 MSARAGIVVTGTEVLSGIISDRNGPWLSERLREIGVDAAFITIAGDRPQDLDAALRFFAE 60 Query 63 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPAN 122 +GVDLIVTSGGLGPTADD+T EVV R+ GRE+ LD+ L RIA+ILK L+ R P ++P Sbjct 61 EGVDLIVTSGGLGPTADDLTAEVVGRFQGREMALDEALFGRIADILKPLLARWPDLDP-- 118 Query 123 FDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGR---PAVMVLPGPPRELQPIWSKAIQ 179 +++ +NRKQA+IP G+ +++PVGTAPGLVVP P V+VLPGPPRELQP+W A Sbjct 119 -EAVLRSNRKQAVIPVGATILEPVGTAPGLVVPPASEGPTVVVLPGPPRELQPMWETARG 177 Query 180 TAPVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMV 239 TA A+ G TT+ +R+FGLPES +A+TL AE + +EITTCLRRGEIE+ Sbjct 178 TAAFTAAVQGATTFDWRIMRLFGLPESEIAETLLVAEREGLSLEPLEITTCLRRGEIEIA 237 Query 240 TRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTG------RRIATAESCT 293 TRFEP A Y LA +R RHG ++SEDG+++DE VA LLTG R IATAESCT Sbjct 238 TRFEPADAPAYDALAAFVRARHGQLLFSEDGSTIDEQVAALLTGSSASPARTIATAESCT 297 Query 294 AGLLAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGAL 353 GLLA RLTDR GSS YV G +V Y+N AK L GV P LIE GAVS VA+A+A GA Sbjct 298 GGLLAGRLTDRAGSSAYVLGGLVVYANAAKVALAGVAPELIERVGAVSPEVAEALADGAA 357 Query 354 QGFGADTATAITGIAGPSGGTPEKPVGTVCFTV-LLDDGRTTTRTVRLPGNRSDIRERST 412 GAD +TGIAGP GGTPEKPVG V +V L D G TR + L GNR+D+R+R+T Sbjct 358 DRLGADVGVGVTGIAGPGGGTPEKPVGLVYVSVALADGGERITRRLNLSGNRADVRDRTT 417 Query 413 TVAMHLLRRTLSGIPGSP 430 TVA+HL+RR L G+P +P Sbjct 418 TVALHLIRRLLLGLPDAP 435 >gi|262204439|ref|YP_003275647.1| CinA domain-containing protein [Gordonia bronchialis DSM 43247] gi|262087786|gb|ACY23754.1| CinA domain protein [Gordonia bronchialis DSM 43247] Length=426 Score = 456 bits (1173), Expect = 3e-126, Method: Compositional matrix adjust. Identities = 238/417 (58%), Positives = 305/417 (74%), Gaps = 8/417 (1%) Query 3 VSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 62 +SARAGI++TGTEVL+GR+ D+NGPW++ RLLELGV++AHITICGDRP D+ AQL F+ Sbjct 1 MSARAGIIVTGTEVLSGRITDKNGPWVSARLLELGVDVAHITICGDRPDDLTAQLDFLTA 60 Query 63 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPAN 122 QGVDLIVT+GGLGPTADD+TV VVA + G L D LE RI ++ R+ A+ ++ Sbjct 61 QGVDLIVTTGGLGPTADDLTVAVVADFAGLALHADPALEARIGERVRDWQKRSGAV--SD 118 Query 123 FDSIRAANRKQAMIPAGSQVIDPVGTAPGLVV-----PGR-PAVMVLPGPPRELQPIWSK 176 + RA KQA++P G+Q I PVGTAPG+ + GR PA+++LPGPPRELQ +W Sbjct 119 EAATRAGIHKQALVPEGAQPIPPVGTAPGVAIGAGARDGRVPAILILPGPPRELQGMWRD 178 Query 177 AIQTAPVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEI 236 A+ V DA++GR YRQETIR +GL E+ LA TLRDA+ ++ FD +EITTC+R GE+ Sbjct 179 ALAFPAVVDALSGRGDYRQETIRAYGLREAELAATLRDAQNSVDVFDDLEITTCMRGGEV 238 Query 237 EMVTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGL 296 E+VTRFE A Y++L+ +LR HG Q++S DG+++ +LVA LTGRRIATAESCT GL Sbjct 239 EIVTRFETAAQPAYSELSDVLRAAHGRQIFSTDGSTLGDLVAGALTGRRIATAESCTGGL 298 Query 297 LAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGF 356 +AARLTDR GSS YV G VV+Y+N+ K LL V +I HGAVSEPVA AMA GAL+ Sbjct 299 VAARLTDRAGSSAYVMGGVVSYANDVKTGLLDVPAEMIAEHGAVSEPVAAAMADGALRRL 358 Query 357 GADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTT 413 DTA + TGIAGP GG+PEKPVGTVCF + + T T T R PG+R+ +R +TT Sbjct 359 DTDTAVSTTGIAGPDGGSPEKPVGTVCFGIAVAGRPTATFTRRFPGDRTTVRALATT 415 >gi|169629529|ref|YP_001703178.1| competence damage-inducible protein A [Mycobacterium abscessus ATCC 19977] gi|169241496|emb|CAM62524.1| Competence-damaged protein CinA-like [Mycobacterium abscessus] Length=420 Score = 445 bits (1145), Expect = 6e-123, Method: Compositional matrix adjust. Identities = 225/421 (54%), Positives = 299/421 (72%), Gaps = 5/421 (1%) Query 6 RAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAEQGV 65 RAGIV+TGTEVLTGRV D NGPW+A+ L ++GV++AH+ +CGDR D+ AQL+F+ +QGV Sbjct 3 RAGIVVTGTEVLTGRVADANGPWLAEHLRKVGVDVAHLCVCGDRREDLLAQLKFLTDQGV 62 Query 66 DLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDS 125 DLIVTSGGLGPTADDMT+ VA + G L+ DD LE I + L+ + R E ++++ Sbjct 63 DLIVTSGGLGPTADDMTLPTVAEFAGTTLIFDDVLETAIMDRLRPMANR---WENVDWEA 119 Query 126 IRAANRKQAMIPAGSQVIDPVGTAPGLVVP-GRPAVMVLPGPPRELQPIWSKAIQTAPVQ 184 +R KQA++PA Q++DPVGTAPG ++ G ++VLPGPP ELQ +W A+ AP + Sbjct 120 LRVGIAKQALVPARGQILDPVGTAPGAIMSAGDVLIVVLPGPPHELQRMWQTAVNAAPFR 179 Query 185 DAIAGRTTYRQETI-RIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRFE 243 + +ET+ R++G+ E +A+TLR AE A+ G +EITTCLRR E+E+VTRF+ Sbjct 180 ALVGDDAAAIEETVLRLYGITEPDIAETLRLAENALGGLAALEITTCLRRSEVEVVTRFD 239 Query 244 PNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAARLTD 303 +A V+ L +R RHG ++S DG++VDE+VA LL GRR+A AESCTAGLL AR+ D Sbjct 240 SSARSVWQGLYEFIRARHGVALFSSDGSTVDEVVAALLHGRRLAVAESCTAGLLGARIAD 299 Query 304 RPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTATA 363 PGSS Y G V++Y+N+ K L VDP L+ +HGAVS VA+AMA GAL+ GAD A + Sbjct 300 VPGSSAYFLGGVISYANDVKVGQLCVDPDLLASHGAVSPEVAEAMADGALKALGADIAVS 359 Query 364 ITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLRRTL 423 TG+AGP GG+P+KPVGTVCF G V +PGNR+ IRER+TTVA+HLLRR L Sbjct 360 TTGVAGPGGGSPDKPVGTVCFCAKTAAGEKAELRVVIPGNRNQIRERATTVALHLLRRLL 419 Query 424 S 424 S Sbjct 420 S 420 >gi|326381798|ref|ZP_08203491.1| competence damage-inducible protein A [Gordonia neofelifaecis NRRL B-59395] gi|326199224|gb|EGD56405.1| competence damage-inducible protein A [Gordonia neofelifaecis NRRL B-59395] Length=421 Score = 436 bits (1120), Expect = 5e-120, Method: Compositional matrix adjust. Identities = 231/424 (55%), Positives = 299/424 (71%), Gaps = 7/424 (1%) Query 3 VSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 62 +S RAGIV+TGTEVL+GR+ DRNGPW++ +LLELGV++AHIT+CGDRP D+ AQL F+ + Sbjct 1 MSIRAGIVVTGTEVLSGRIADRNGPWVSQQLLELGVDIAHITVCGDRPDDLAAQLGFLTD 60 Query 63 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPAN 122 Q VDLIVT+GGLGPTADD+TV VA + GR L DD + I ++++ + + A Sbjct 61 QRVDLIVTTGGLGPTADDLTVAAVADFTGRALRSDDRIRAVIESVIRNWRKYDDDLPSA- 119 Query 123 FDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVP---GRPAVMVLPGPPRELQPIWSKAIQ 179 + AA KQA+IP G++ I P GTAPG+ VP G PA++VLPGPP E+Q +W A+ Sbjct 120 ---VVAAIDKQALIPLGAEAIPPTGTAPGVAVPATGGLPAILVLPGPPHEVQAMWPSAVA 176 Query 180 TAPVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMV 239 T V+ AIAGR Y Q TIR +GL E+ LA +LRDAE + GF +EITTC+R GE+E+V Sbjct 177 TEAVEAAIAGRAAYDQHTIRAYGLSEADLAVSLRDAEGTVDGFGDLEITTCMRGGELEIV 236 Query 240 TRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAA 299 TRFE AAQ Y L LL +RHG +VYS DG+S+ +++A LL R I TAESCT G++AA Sbjct 237 TRFETVAAQAYQTLEALLLERHGDRVYSTDGSSIGDVLAGLLGDRTIGTAESCTGGMVAA 296 Query 300 RLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGAD 359 LTDR GSS Y+ G VV+Y++E K+ +LGV P LI+ GAVSEPVA AMA GA + G+D Sbjct 297 ALTDRAGSSAYMLGGVVSYADEVKSGVLGVPPELIDELGAVSEPVAAAMADGARRVLGSD 356 Query 360 TATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLL 419 A + TGIAGP G P KPVGTVCF V + T T T PG+R +R +T+ AMHL+ Sbjct 357 VAVSTTGIAGPGGARPGKPVGTVCFGVAVSGRETVTVTRHFPGDRDSVRRLATSAAMHLV 416 Query 420 RRTL 423 + L Sbjct 417 AQAL 420 >gi|343927099|ref|ZP_08766585.1| CinA-like protein [Gordonia alkanivorans NBRC 16433] gi|343763001|dbj|GAA13511.1| CinA-like protein [Gordonia alkanivorans NBRC 16433] Length=424 Score = 431 bits (1109), Expect = 9e-119, Method: Compositional matrix adjust. Identities = 227/416 (55%), Positives = 288/416 (70%), Gaps = 9/416 (2%) Query 10 VITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAEQGVDLIV 69 ++TGTEVLTGR+ D+NGPW++++LL GV++AHITICGDRPAD+ AQLRF+A+Q VDLIV Sbjct 1 MVTGTEVLTGRIADQNGPWVSEQLLAAGVDVAHITICGDRPADLTAQLRFLADQQVDLIV 60 Query 70 TSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDSIRAA 129 TSGGLGPTADD+TV VA +CGR+L LD LE IA I+++ P + R Sbjct 61 TSGGLGPTADDLTVATVAEFCGRDLQLDPALEEHIAGIIRRW---RPDTVDLDDGPTRIG 117 Query 130 NRKQAMIPAGSQVIDPVGTAPGLVVPG------RPAVMVLPGPPRELQPIWSKAIQTAPV 183 KQA +PAG+ I P GTAPG+ +P PA++VLPGPP ELQ +W AI + + Sbjct 118 IHKQARVPAGAVAIPPTGTAPGVAIPAVPGTQPLPAILVLPGPPGELQAMWPAAIASPAI 177 Query 184 QDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRFE 243 D ++ QETIR +GL E+ LA+TLR AE IPGF +EITTCLRRGE++MVTRF Sbjct 178 ADVVSRADDLTQETIRAYGLHEAELAETLRRAEETIPGFAALEITTCLRRGELDMVTRFA 237 Query 244 PNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAARLTD 303 Y QL L + HG Q++S DG+++++ + L GR IATAESCT GL+AARLTD Sbjct 238 AADTATYGQLLDFLTEHHGRQIFSTDGSTIEDQLIATLDGRLIATAESCTGGLVAARLTD 297 Query 304 RPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTATA 363 RPGSS YV G VV+YSN+AK+ L+ V LI + GAVSE VA AMA GAL+ +D A + Sbjct 298 RPGSSAYVTGGVVSYSNDAKSDLIDVPAELIASRGAVSEEVAAAMAEGALRHLKSDVAVS 357 Query 364 ITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLL 419 TGIAGP GGT KPVGTVCF V + T T T R PG+R +R +TT A+HL+ Sbjct 358 TTGIAGPDGGTEAKPVGTVCFGVAIKGRPTHTITRRFPGDRERVRSLTTTAALHLV 413 >gi|331695413|ref|YP_004331652.1| competence/damage-inducible protein CinA [Pseudonocardia dioxanivorans CB1190] gi|326950102|gb|AEA23799.1| competence/damage-inducible protein CinA [Pseudonocardia dioxanivorans CB1190] Length=432 Score = 388 bits (996), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 224/423 (53%), Positives = 275/423 (66%), Gaps = 9/423 (2%) Query 6 RAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAEQGV 65 RAGIV+TG+E+LTG + D NGPW+A RL +LG E+AH+ GDRP D+ L F+A GV Sbjct 9 RAGIVVTGSELLTGAISDANGPWLARRLADLGFEVAHVVSAGDRPEDLVRALDFLAGAGV 68 Query 66 DLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDS 125 LIVTSGGLGPTADD+T EVVA + G ++V+D+++ +I IL R PA Sbjct 69 ALIVTSGGLGPTADDLTAEVVAGFAGLDMVVDEDVRAQIDVILADWGARAGFAGPA---- 124 Query 126 IRAANRKQAMIPAGSQVIDPVGTAPGLVV--PGRPAVMVLPGPPRELQPIWSKAIQTAPV 183 + A RKQA IP GS + PVGTAPGLVV PG P V+VLPGPPRELQ +W A++ Sbjct 125 LDEATRKQATIPQGSTPLPPVGTAPGLVVDRPGGPLVVVLPGPPRELQGMWPSALEAPAF 184 Query 184 QDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRFE 243 +A +R FGLPES +A TLR+ EA+ VEI TCLR E+E+ R Sbjct 185 AALLATVPPAHPRLLRFFGLPESEIAATLREIEAST-DVSGVEIGTCLRHSELEVDLRPR 243 Query 244 PNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLT--GRRIATAESCTAGLLAARL 301 P A V ++AR + RH ++ S+ GA+VDEL+A+ L G +AT ESCT GLLA RL Sbjct 244 PGAEAVAEEVAREIVARHAGRLVSDVGATVDELLAQALLERGLTVATGESCTGGLLAGRL 303 Query 302 TDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTA 361 DR GSS YVAG VVAYSNEAK LL V +IE HGAVS VA+A+A GA + FGAD Sbjct 304 VDRAGSSAYVAGGVVAYSNEAKTALLDVPADMIETHGAVSPEVARALADGARRRFGADVG 363 Query 362 TAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLRR 421 ITG+AGP GGT KPVG VCF V DG R RL G+R+DIRERS AMHLL R Sbjct 364 VGITGVAGPGGGTEAKPVGYVCFCVTTADGVVIARDPRLRGSRADIRERSVDTAMHLLLR 423 Query 422 TLS 424 ++ Sbjct 424 AVA 426 >gi|339294836|gb|AEJ46947.1| competence damage-inducible protein A [Mycobacterium tuberculosis CCDC5079] Length=193 Score = 385 bits (989), Expect = 7e-105, Method: Compositional matrix adjust. Identities = 193/193 (100%), Positives = 193/193 (100%), Gaps = 0/193 (0%) Query 238 MVTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLL 297 MVTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLL Sbjct 1 MVTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLL 60 Query 298 AARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFG 357 AARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFG Sbjct 61 AARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFG 120 Query 358 ADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMH 417 ADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMH Sbjct 121 ADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMH 180 Query 418 LLRRTLSGIPGSP 430 LLRRTLSGIPGSP Sbjct 181 LLRRTLSGIPGSP 193 >gi|284988692|ref|YP_003407246.1| CinA domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284061937|gb|ADB72875.1| CinA domain protein [Geodermatophilus obscurus DSM 43160] Length=434 Score = 383 bits (983), Expect = 4e-104, Method: Compositional matrix adjust. Identities = 228/433 (53%), Positives = 297/433 (69%), Gaps = 19/433 (4%) Query 3 VSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE 62 V+ RAGIV+TGTEVLTGRV DRNGPW+A+ L LGV++ + + GDRP D+ LRF+A Sbjct 11 VAVRAGIVVTGTEVLTGRVSDRNGPWLAEELRRLGVDVGAVLVVGDRPEDLRNALRFLA- 69 Query 63 QGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLM-GRNPAIEPA 121 G D+++T+GGLGPTADD+T EVVA GR LD ELE +A I++ LM GR +PA Sbjct 70 -GEDVVITTGGLGPTADDLTAEVVAGVQGRPSSLDPELERHVAGIVEGLMDGRGWRADPA 128 Query 122 NFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVP---GR--PAVMVLPGPPRELQPIWSK 176 + A RKQA++P G+ V+ PVGTAPGLVVP GR P V+VLPGPP ELQ +W Sbjct 129 ---ATAAGVRKQALVPEGATVLPPVGTAPGLVVPPAEGRDGPVVVVLPGPPSELQGMWPA 185 Query 177 AIQTAPVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEI 236 A+ PVQ +AGR+ RQET+R++G ES LA TLR++E F +E+TTCLR GE+ Sbjct 186 ALDAEPVQRVLAGRSELRQETLRLWGTLESQLAATLRESE-----FPGLEVTTCLRDGEL 240 Query 237 EMVTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRR--IATAESCTA 294 E+VTR+ P+A Y +L +R+ HG Q++S G +VD+LVA RR +ATAESCT+ Sbjct 241 EIVTRYGPDAQPEYDRLVGAVREAHGPQLFS-TGPTVDDLVASAFADRRLTVATAESCTS 299 Query 295 GLLAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQ 354 GLL ARLT+R GSS +V G V +Y+N AK L+GV L+ ++GAVS VA A+A GA Sbjct 300 GLLVARLTERAGSSAWVLGGVASYANSAKEALVGVPSELLASYGAVSTQVAAALAEGARS 359 Query 355 GFGADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTV 414 FGAD ITGIAGP GG+ EKPVGTV + +R+V LPG+RS +R RS ++ Sbjct 360 RFGADVGVGITGIAGPGGGSAEKPVGTVHLCAVGPSSEGLSRSVVLPGSRSAVRHRSVSL 419 Query 415 AMHLLRRTLSGIP 427 AMH++R+ L G P Sbjct 420 AMHMVRQLLLGGP 432 >gi|339294835|gb|AEJ46946.1| competence damage-inducible protein A [Mycobacterium tuberculosis CCDC5079] Length=213 Score = 377 bits (969), Expect = 2e-102, Method: Compositional matrix adjust. Identities = 188/188 (100%), Positives = 188/188 (100%), Gaps = 0/188 (0%) Query 1 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM 60 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM Sbjct 1 MAVSARAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFM 60 Query 61 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEP 120 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEP Sbjct 61 AEQGVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEP 120 Query 121 ANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQT 180 ANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQT Sbjct 121 ANFDSIRAANRKQAMIPAGSQVIDPVGTAPGLVVPGRPAVMVLPGPPRELQPIWSKAIQT 180 Query 181 APVQDAIA 188 APVQDAIA Sbjct 181 APVQDAIA 188 >gi|51892781|ref|YP_075472.1| competence damage-inducible protein A [Symbiobacterium thermophilum IAM 14863] gi|62286535|sp|Q67NW5.1|CINA_SYMTH RecName: Full=Putative competence-damage inducible protein gi|51856470|dbj|BAD40628.1| competence-damage inducible protein [Symbiobacterium thermophilum IAM 14863] Length=426 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 185/444 (42%), Positives = 253/444 (57%), Gaps = 48/444 (10%) Query 7 AGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAEQGVD 66 A +V GTE+L G + + N +++ +L +LGV++ H + GD A + A L A D Sbjct 3 AELVFVGTELLLGEILNTNAQYLSRQLAQLGVDVYHQVVVGDNAARLRAVLS-QALSRSD 61 Query 67 LIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDSI 126 L++ SGGLGPT DD+T EV A GR L LD +L ++ I GR A Sbjct 62 LVIASGGLGPTDDDITREVAAEVTGRPLELDPQLLAQL-EIWFARRGRRMA--------- 111 Query 127 RAANRKQAMIPAGSQVI-DPVGTAPGLVVP--GRPAVMVLPGPPRELQPIWSKAIQTAPV 183 NR+Q M+P G++V+ + GTAPGL++P G V++LPGPP EL+P++ + AP Sbjct 112 -ENNRRQCMVPRGARVLPNDRGTAPGLMIPADGDKVVILLPGPPGELRPMFEAHV--APY 168 Query 184 QDAIAGRTTYR--QETIRIFGLPESSLADTLRDAEAA------IPGFDLVEITTCLRRGE 235 A +G R T+R G+ ES+LAD LRD A P + E+ Sbjct 169 LAARSGGRPLRLVTRTLRFVGIGESALADGLRDLMATQTDPTIAPYAKVAEV-------H 221 Query 236 IEMVTRFEPNAAQVYTQLARL---LRDRHGHQVYSEDGASVDELVAKLLT--GRRIATAE 290 + + TR + A+ Y ++A L +R R G +Y D ++ + V +LL G ++TAE Sbjct 222 LRLATR-AADEAEGYARIAPLEAEIRSRFGRFLYGSDEETLPQAVGRLLAERGMTLSTAE 280 Query 291 SCTAGLLAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAA 350 SCT GL+A +TD PGSS+Y V Y+NEAK LLGV L+ AHGAVSEPVA+AMA Sbjct 281 SCTGGLVAKWITDVPGSSRYFGTGFVTYANEAKVSLLGVPEELLSAHGAVSEPVARAMAE 340 Query 351 GALQGFGADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGR---------TTTRTVRLP 401 GALQ GAD A A++GIAGP GGTPEKPVGTVCF L GR T T+ L Sbjct 341 GALQRSGADVAVAVSGIAGPDGGTPEKPVGTVCFA-LAGRGRQGGGPLPAGTWAETLWLH 399 Query 402 GNRSDIRERSTTVAMHLLRRTLSG 425 G+R +RER+ A+ ++RR L G Sbjct 400 GDRDGVRERAAVHALAMVRRYLLG 423 >gi|302877133|ref|YP_003845766.1| competence/damage-inducible protein CinA [Clostridium cellulovorans 743B] gi|307687828|ref|ZP_07630274.1| competence damage-inducible protein A [Clostridium cellulovorans 743B] gi|302579990|gb|ADL54002.1| competence/damage-inducible protein CinA [Clostridium cellulovorans 743B] Length=409 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 154/431 (36%), Positives = 236/431 (55%), Gaps = 38/431 (8%) Query 6 RAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAEQGV 65 +A I+ GTE+L G + + N +++ L LGV + H ++ GD P ++ L A + V Sbjct 2 KAEILCVGTELLLGDIVNTNAQYLSQELAALGVNVYHQSVVGDNPGRVKEVLD-NAYKSV 60 Query 66 DLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDS 125 DL++T+GGLGPT DD+T EV+A Y +EL ++E I +I K++ GR Sbjct 61 DLVITTGGLGPTKDDLTKEVIAEYFNKELKFNEEALKNIEDIFKRI-GR----------E 109 Query 126 IRAANRKQAMIPAGSQVI-DPVGTAPGLVVPGRPAVMV-LPGPPRELQPIWSKAIQTAPV 183 + +N+KQA IP G+ ++ + GTAPG ++ V++ LPGPPRE++ ++ +A Sbjct 110 VTESNKKQAYIPEGAIILHNQCGTAPGCIIEDEGKVLIMLPGPPREMKAMFKQA------ 163 Query 184 QDAIAGRTTYR---QETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVT 240 +D + + + + +R++GLPE+ ADTL + D T E E+ Sbjct 164 KDMYLNKKSDKTLISKVLRVYGLPEAQAADTLDEL------LDNSNPTVAPYAKEHEITF 217 Query 241 RF------EPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRI--ATAESC 292 R E A ++ + ++DR G VY ED +++ +VAK+L R + ATAESC Sbjct 218 RVTASANNEEEAIKIMQPIIDTIKDRLGQFVYGEDEDTLESVVAKILVERNLTLATAESC 277 Query 293 TAGLLAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGA 352 T GLLA + PG SK + YSNEAK + LGV+ L+E +GAVSE VA+ MA Sbjct 278 TGGLLAGTFINYPGISKVFKEGFITYSNEAKEETLGVNKELLEKYGAVSEEVAREMAKKV 337 Query 353 LQGFGADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERST 412 + G + + TGIAGP GGT EKPVG V + +G + + L G+R +R R+ Sbjct 338 AEKAGVNIGLSTTGIAGPDGGTDEKPVGLVYIGCCI-NGEVKVKKLNLNGDRQKVRNRTV 396 Query 413 TVAMHLLRRTL 423 ++LLR L Sbjct 397 LEVINLLRCNL 407 >gi|326203613|ref|ZP_08193477.1| competence/damage-inducible protein CinA [Clostridium papyrosolvens DSM 2782] gi|325986433|gb|EGD47265.1| competence/damage-inducible protein CinA [Clostridium papyrosolvens DSM 2782] Length=415 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 158/424 (38%), Positives = 236/424 (56%), Gaps = 27/424 (6%) Query 6 RAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAEQGV 65 +A I+ GTE+L G++ + N +I+ +L E GV + + ++ GD P +E L+ E+ Sbjct 2 KAEILAVGTELLMGQIVNTNAQYISSKLPEAGVGVYYHSVVGDNPDRLEDSLKLALER-C 60 Query 66 DLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDS 125 D+++T+GGLGPT DD+T E ++R CG++LV+ +E N+I N +L GR Sbjct 61 DIVITTGGLGPTQDDLTKETISRVCGKKLVIHEESLNKIKNYFSRL-GR----------Q 109 Query 126 IRAANRKQAMIPAGSQVI-DPVGTAPGLVVP-GRPAVMVLPGPPRELQPIWSKAIQTAPV 183 + N KQA +P G V+ + GTAPG ++ G AV++LPGPP E++P++ + Sbjct 110 MTPNNEKQAYMPEGCIVLKNNNGTAPGCIIEMGEKAVIMLPGPPVEMKPMFLDYVMPYFK 169 Query 184 QDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEM-VTRF 242 G + + +R+FG+ ES++ + D I G I T + GE+ + +T Sbjct 170 NK---GAYSLKSVILRVFGIGESAMETKIMDL---IDGQTNPTIATYAKEGEVTIRITAS 223 Query 243 EP---NAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRI--ATAESCTAGLL 297 P +A Q+ + ++ R G +YS+ ++D + A LL I ATAESCT GL+ Sbjct 224 VPMGQSAEQILMPVVNEIKRRTGENLYSDKDETLDSVAAGLLFENNITIATAESCTGGLI 283 Query 298 AARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFG 357 + LTD PG SK G V YSNEAK + LGV ++AHGAVS A MA G + Sbjct 284 SEMLTDVPGISKVFMGGAVTYSNEAKMEYLGVKEQTLKAHGAVSRETAAEMAEGIRKRLK 343 Query 358 ADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMH 417 D ++TGIAGP GGT EKPVG V + L +G T T+ +RL GNR IR + Sbjct 344 TDIGISVTGIAGPGGGTDEKPVGLV-YVGLSSEGGTITKELRLSGNRKKIRTITALNVFD 402 Query 418 LLRR 421 L+RR Sbjct 403 LIRR 406 >gi|150020676|ref|YP_001306030.1| competence/damage-inducible protein CinA [Thermosipho melanesiensis BI429] gi|167008611|sp|A6LL44.1|CINAL_THEM4 RecName: Full=CinA-like protein gi|149793197|gb|ABR30645.1| competence/damage-inducible protein CinA [Thermosipho melanesiensis BI429] Length=401 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 143/424 (34%), Positives = 239/424 (57%), Gaps = 30/424 (7%) Query 6 RAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE--Q 63 ++ I+ G E++ G + D N +I+ +LLE+G + I P D+E + + + + Sbjct 3 KSIILAIGNELVEGIIIDTNSKYISKKLLEIGYKTVAINTL---PDDLEILVEEIRDSLK 59 Query 64 GVDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANF 123 DL++T+GGLGPT DD+T E +++ G+EL+ +++L N +ILKK+ + I P N Sbjct 60 KADLLITTGGLGPTEDDLTREAISKTVGKELIFNEKLYN---SILKKVKEFHSEI-PKNI 115 Query 124 DSIRAANRKQAMIPAGSQVI-DPVGTAPGLVVP-GRPAVMVLPGPPRELQPIWSKAIQTA 181 + KQA + G+++I +PVGTAPG ++ G +++LPGPP E++PI+ ++++ Sbjct 116 E-------KQAWVINGARIIENPVGTAPGQILQIGEKQIIILPGPPVEMKPIFEESLKFL 168 Query 182 PVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTR 241 + I Q+ I+ G+PE+ L + +D ++ + + + E+ R Sbjct 169 EKFEKIY------QKRIKTLGIPEAILVEKYKDIIYKYKDVNVATLASHISGVEL----R 218 Query 242 FEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRIATAESCTAGLLAARL 301 F +V ++ +LL+++ +Y+ D +++E+V K L G+ ++ AESCT GL++A+ Sbjct 219 FTGKKEKV-DEIVKLLKEKLSDHIYALDNETIEEVVFKKLEGKSVSFAESCTGGLISAKF 277 Query 302 TDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTA 361 PG SK GA+VAYSN+ K ++L V+ I+ +GAVS+ MA D A Sbjct 278 VSIPGISKVFKGAIVAYSNKVKEKVLNVNKNTIQKYGAVSKECVMEMAKEVSYFLDTDYA 337 Query 362 TAITGIAGPSGGTPEKPVGTVCFTVLL-DDGRTTTRTVRLPGNRSDIRERSTTVAMHLLR 420 A++GIAGP+GGT EKPVGTV ++ GNR IRE+S A +LLR Sbjct 338 VAVSGIAGPTGGTKEKPVGTVWICAYKRENDYYLVEKFFFRGNREIIREKSALNAFNLLR 397 Query 421 RTLS 424 R LS Sbjct 398 RILS 401 >gi|220928125|ref|YP_002505034.1| competence/damage-inducible protein CinA [Clostridium cellulolyticum H10] gi|254763745|sp|B8I7D0.1|CINA_CLOCE RecName: Full=Putative competence-damage inducible protein gi|219998453|gb|ACL75054.1| competence/damage-inducible protein CinA [Clostridium cellulolyticum H10] Length=415 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 157/434 (37%), Positives = 234/434 (54%), Gaps = 43/434 (9%) Query 6 RAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAEQGV 65 RA I+ GTE+L G++ + N +I+ +L E GV + + ++ GD P +E L+ +A + Sbjct 2 RAEILAVGTELLLGQIANTNAQYISSKLPEAGVGVYYHSVVGDNPDRLEDCLK-LALKRC 60 Query 66 DLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDS 125 D+++T+GGLGPT DD+T E ++R CG++LVL E N I N L GR Sbjct 61 DIVITTGGLGPTQDDLTKETISRVCGKKLVLHQESLNDIRNYFSSL-GRQ---------- 109 Query 126 IRAANRKQAMIPAGSQVI-DPVGTAPGLVVP-GRPAVMVLPGPPRELQPIWSKAIQTAPV 183 + N KQA +P G ++ + GTAPG ++ G V++LPGPP E++P++ V Sbjct 110 MTPNNEKQAYMPEGCIILKNTNGTAPGCIIETGGKIVVMLPGPPAEMKPMFLDY-----V 164 Query 184 QDAIAGRTTYRQETI--RIFGLPESSLADTLRD----------AEAAIPGFDLVEITTCL 231 + Y E++ R+FG+ ES++ + D A A G + +T + Sbjct 165 IPYFKNKGAYSIESVILRVFGIGESAMETKIMDLIDAQTNPTIATYAKEGEVSIRVTASV 224 Query 232 RRGEIEMVTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRRI--ATA 289 +GE +A + + ++ R G +YS+ ++D +VA+LLT I TA Sbjct 225 LKGE---------SADSILIPVVNEIKRRTGDNLYSDKDKTLDAVVAELLTKNNITIGTA 275 Query 290 ESCTAGLLAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMA 349 ESCT GL++ +LTD PG S+ G V YSNEAK + LGV I+AHGAVS A MA Sbjct 276 ESCTGGLISEKLTDIPGISQVFMGGAVTYSNEAKVEYLGVKEQTIKAHGAVSRETASEMA 335 Query 350 AGALQGFGADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRE 409 G + D ++TGIAGP GGT EKPVG V + L + T T+ +RL GNR IR Sbjct 336 EGIRKRLKTDIGISVTGIAGPGGGTAEKPVGLV-YIGLSSESGTVTKELRLSGNRKKIRT 394 Query 410 RSTTVAMHLLRRTL 423 + L+RR + Sbjct 395 ITALNVFDLIRRHI 408 >gi|296132948|ref|YP_003640195.1| competence/damage-inducible protein CinA [Thermincola sp. JR] gi|296031526|gb|ADG82294.1| competence/damage-inducible protein CinA [Thermincola potens JR] Length=414 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 156/419 (38%), Positives = 235/419 (57%), Gaps = 24/419 (5%) Query 9 IVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRF-MAEQGVDL 67 I+ TGTE+LTGR ++ N ++A L+ LG+ T GD +++ L+ +AE DL Sbjct 5 IINTGTELLTGRTRNANAHYLARELMLLGIRTWRQTTIGDYEKNLKDALKSALAES--DL 62 Query 68 IVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDSIR 127 + +GGLGPT DD+T E +A G E+ L + RI A A + Sbjct 63 VFVTGGLGPTVDDITKESLAAVLGLEMQLHEASLERIR-----------AFFAARGVDMP 111 Query 128 AANRKQAMIPAGSQVI-DPVGTAPGLVVPGRPAVMV-LPGPPRELQPIWSKAIQTAPVQD 185 ANRKQA++P + + + VGTAPG ++ R + V LPGPP ELQP++ + ++ + Sbjct 112 EANRKQALLPVSALALTNEVGTAPGFILEARDKIFVVLPGPPWELQPMFEQYVKPYLKKK 171 Query 186 AIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRFEPN 245 + G +Q+TI+++G+ ES++ D L D VEI +RGE+ + E Sbjct 172 GLTGADRLKQKTIKLWGIGESAVQDLLADLHRKNGN---VEIAYQAQRGEVWVKLLTENG 228 Query 246 AAQ--VYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRR--IATAESCTAGLLAARL 301 AA Q+ + R G++V+ D +++ VA+LL ++ AESCT GL+A +L Sbjct 229 AANGDELEQITCEITTRLGNKVFGFDEDTMEMTVARLLVKHNLTVSLAESCTGGLIAKKL 288 Query 302 TDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTA 361 TD PGSS+Y+ VV+YSNEAK ++LGV P ++ GAVS A MA G + D A Sbjct 289 TDLPGSSEYLMYGVVSYSNEAKEKILGVSPETLKQFGAVSSETALEMARGVKKLGNTDVA 348 Query 362 TAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLR 420 ++TGIAGP GG+PEKPVG V + DG + + + G+R +IRE S A+++LR Sbjct 349 VSVTGIAGPGGGSPEKPVGLVYTGLAHKDGAFSQKHL-FYGDRENIRELSARAALNMLR 406 >gi|322421554|ref|YP_004200777.1| competence/damage-inducible protein CinA [Geobacter sp. M18] gi|320127941|gb|ADW15501.1| competence/damage-inducible protein CinA [Geobacter sp. M18] Length=414 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 161/423 (39%), Positives = 245/423 (58%), Gaps = 25/423 (5%) Query 6 RAGIVITGTEVLTGRVQDRNGPWIADRLLELGVE-LAHITICGDRPADIEAQLRFMAEQG 64 + I+ G E+L+G V D N IADRL + G H+T+ D A ++A LR +A Sbjct 2 KVAILSIGDELLSGEVVDTNASHIADRLYDSGARVFRHLTVPDDEEAIVQA-LRELA-GA 59 Query 65 VDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFD 124 D ++ +GGLGPT DD T + AR G EL L E +A +++ + + PAN Sbjct 60 SDAVIVTGGLGPTPDDYTAQAAARAAGSELELSQEALEHLARFEERI---SRPLHPAN-- 114 Query 125 SIRAANRKQAMIPAGSQVI-DPVGTAPGLVVPGRPA-VMVLPGPPRELQPIWSKAIQTAP 182 R+QA++P G ++I +P+GTA G +V A + LPG P E++ + ++ + A Sbjct 115 ------RRQALVPKGCRLIGNPLGTACGFIVTIDGAELFFLPGVPFEMERMLAQTVLPAL 168 Query 183 VQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRF 242 + A ++R+ T+R+FG+PE+++++ L E AIP V++ C+R EI ++ R Sbjct 169 ERRLPA---SFRRVTLRLFGIPEAAISERL---EGAIPEGSPVQLAYCVRYPEIHVILRA 222 Query 243 EPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLL--TGRRIATAESCTAGLLAAR 300 A++ Q A LR+R +++EDG ++D ++A+L +G +A AESCT G++AAR Sbjct 223 AAEDAELLKQAAAKLRERLADYLFAEDGETMDHVLARLFRESGLTLALAESCTGGMIAAR 282 Query 301 LTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADT 360 +T+ GSS Y V YSN AK+++L V LIE HGAVS VA+AMA GA + G+D Sbjct 283 ITEVAGSSAYFLEGNVTYSNSAKSRMLRVPAELIERHGAVSAEVARAMAIGAREAAGSDL 342 Query 361 ATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHLLR 420 A ++TGIAGP GGTP+KPVGTV + L D G+R +R + A+ LLR Sbjct 343 ALSVTGIAGPEGGTPDKPVGTV-YLGLADAASCRVERCNFQGDRERVRSITCFTALDLLR 401 Query 421 RTL 423 + L Sbjct 402 KHL 404 >gi|20807822|ref|NP_622993.1| competence damage-inducible protein A [Thermoanaerobacter tengcongensis MB4] gi|254479113|ref|ZP_05092465.1| competence/damage-inducible protein CinA N-terminal domain, putative [Carboxydibrachium pacificum DSM 12653] gi|44887797|sp|Q8RA54.1|CINA_THETN RecName: Full=Putative competence-damage inducible protein gi|20516382|gb|AAM24597.1| predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [Thermoanaerobacter tengcongensis MB4] gi|214034962|gb|EEB75684.1| competence/damage-inducible protein CinA N-terminal domain, putative [Carboxydibrachium pacificum DSM 12653] Length=412 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 155/434 (36%), Positives = 237/434 (55%), Gaps = 41/434 (9%) Query 6 RAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAEQGV 65 R I+ GTE+L G++ + N ++++RL LG+++ T GD ++ L+ E+ Sbjct 2 RGEIISVGTELLLGQIVNTNAKYLSERLALLGIDIYFHTNVGDNEERLKQCLKIAYERS- 60 Query 66 DLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDS 125 +LI+T+GGLGPT DD+T E +A + LV +E + I N +++ G+ P Sbjct 61 ELIITTGGLGPTVDDITKETIASFLNLPLVESEEAKQEIINFFERI-GQKPT-------- 111 Query 126 IRAANRKQAMIPAGSQVI-DPVGTAPGLVVPGRPAVMV-LPGPPRELQPIWSKAIQTAPV 183 N KQA+ PAGS+++ + GTAPG ++ + V LPGPP EL P++ + + P Sbjct 112 --ENNFKQALFPAGSKILPNKNGTAPGFILEKEGKIFVVLPGPPSELIPMFEEHVY--PY 167 Query 184 QDAIAGRTTYRQETIRIFGLPESSLADTLRDA-EAAIP--------GFDLVEITTCLRRG 234 T + ++IFGL ES + + +R + + P G+ + IT + Sbjct 168 LKRFTSETI-KSRVLKIFGLGESKVEEMVRPLLQGSNPTVAPLVGDGYVTLRITAKGKEE 226 Query 235 EI-EMVTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGR--RIATAES 291 E+ EM++ Q+ + +R+ G +Y+ D ++E+V KLL R +ATAES Sbjct 227 EVYEMIS-----------QVEKKIREILGEYIYAVDDEEMEEIVIKLLQKRGFTLATAES 275 Query 292 CTAGLLAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAG 351 CT GLLA ++TD PG+SK VV YSNEAK ++LGV + ++AHGAVS A+ MA Sbjct 276 CTGGLLAKKITDVPGASKVFNLGVVTYSNEAKEKVLGVKKSTLDAHGAVSPETAKEMAEN 335 Query 352 ALQGFGADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERS 411 +D + TGIAGPSGG+PEKPVG V + +T + + L GNR IR RS Sbjct 336 VRVLAKSDLGLSTTGIAGPSGGSPEKPVGLV-YVGFATPEKTYVKKLMLSGNRDRIRTRS 394 Query 412 TTVAMHLLRRTLSG 425 A ++RR L G Sbjct 395 MLHAFDMVRRYLEG 408 >gi|217077078|ref|YP_002334794.1| competence/damage-inducible protein CinA N- domain, [Thermosipho africanus TCF52B] gi|217036931|gb|ACJ75453.1| competence/damage-inducible protein CinA N- domain, putative [Thermosipho africanus TCF52B] Length=413 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 150/427 (36%), Positives = 231/427 (55%), Gaps = 36/427 (8%) Query 7 AGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAE--QG 64 A I+ G E++ G + D N +I+ +LLE G + I P D++ ++ + + + Sbjct 14 ASIIAIGNELVEGIIVDTNSKYISKKLLEYGYKTK---IIKTLPDDLDLLVKEIKDSLET 70 Query 65 VDLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFD 124 DL+VT+GGLGPT DD+T E V++ + L+LD+ L +I KK P I Sbjct 71 TDLVVTTGGLGPTEDDLTREAVSKALEKNLILDENLSKKIIEKAKKFHSYVPKIV----- 125 Query 125 SIRAANRKQAMIPAGSQVI-DPVGTAPGLVVPG-RPAVMVLPGPPRELQPIWSKAIQTAP 182 +QAM+ G+ V+ +PVGTAPG+++ + +++LPGPP E+ PI+ KA+ Sbjct 126 ------ERQAMVIEGATVLENPVGTAPGMLLKTPKSTILILPGPPVEMIPIFEKALNLIE 179 Query 183 VQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGE-IEMVTR 241 ++ I Q I+ +PE+ L + +D I + V + T +E+ R Sbjct 180 KENKIY------QRRIKTINIPEAVLVEKYKDI---IYKYKEVNVATMASHTSGVEL--R 228 Query 242 FEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELV-AKLLTGRR-IATAESCTAGLLAA 299 F A V ++ +L ++ +Y+ D +++E+V KLL+ + ++ AESCT GL++A Sbjct 229 FTGEKALV-DEIVNMLSEKLKDYIYAFDDKTIEEIVFEKLLSKNKTVSFAESCTGGLVSA 287 Query 300 RLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGAD 359 + G SK G++VAYSNE K +LL V+P +E GAVS+ + MA G + D Sbjct 288 NFVNLSGVSKVFKGSIVAYSNEVKQKLLNVNPKTLEKFGAVSKECVEEMAKGVSKLLDTD 347 Query 360 TATAITGIAGPSGGTPEKPVGTV--CFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMH 417 + AI+GIAGP+GGT EKPVGTV C +D T R GNR IR RST A Sbjct 348 YSVAISGIAGPTGGTKEKPVGTVWICAYSRENDIFMTER-FYFKGNRQTIRNRSTLHAFD 406 Query 418 LLRRTLS 424 +LRR L Sbjct 407 MLRRILK 413 >gi|222528977|ref|YP_002572859.1| competence/damage-inducible protein CinA [Caldicellulosiruptor bescii DSM 6725] gi|254763728|sp|B9MQY2.1|CINA_ANATD RecName: Full=Putative competence-damage inducible protein gi|222455824|gb|ACM60086.1| competence/damage-inducible protein CinA [Caldicellulosiruptor bescii DSM 6725] Length=411 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 147/432 (35%), Positives = 241/432 (56%), Gaps = 41/432 (9%) Query 7 AGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAEQGVD 66 A I+ GTE+L G++ + N ++A +L ELG++L T GD ++ + +A + D Sbjct 3 AEIICVGTELLLGQILNTNSQYLAQKLAELGIDLYFQTTVGDNMERLKMAID-IATKRSD 61 Query 67 LIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDSI 126 +++ +GGLGPT+DD+T E VA Y G LVLD+++ RI + ++ + P I Sbjct 62 VLIFTGGLGPTSDDITKEAVADYFGLTLVLDEDILRRIESFFERRQVKMPQI-------- 113 Query 127 RAANRKQAMIPAGSQVI-DPVGTAPGLVVP--GRPAVMVLPGPPRELQPIWSKAIQTAPV 183 N+KQA +P G++V+ + GTAPGL++ G+ A++ LPGPP E+QP++ + + P Sbjct 114 ---NKKQAYVPEGAKVLHNKNGTAPGLIIEKDGKIAIL-LPGPPFEMQPMFEE--EVLPY 167 Query 184 QDAIAGRTTYRQETIRIFGLPESSLADTLRD----------AEAAIPGFDLVEITTCLRR 233 + + + Y + ++ G+ ESS+ + L+D A A P + ITT Sbjct 168 LEKFSKQKIYSR-VLKFIGIGESSIEEALKDLILSQTDPTMALYAKPFEVELRITTKKES 226 Query 234 GEIEMVTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRR--IATAES 291 E+ A + + +R+R G +Y D ++E+V LLT ++ ++ AES Sbjct 227 EEL---------AKSLLQSMEYRIRERLGEYIYGVDRQLLEEVVIGLLTEKKLKVSVAES 277 Query 292 CTAGLLAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAG 351 CT GL+ +LT+ PG+S+ + YSNEAK +LLGV +++ HGAVS A+ MA G Sbjct 278 CTGGLICNKLTNVPGASEVFDRGFIVYSNEAKMKLLGVPEQVLKEHGAVSSQTARFMAQG 337 Query 352 ALQGFGADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERS 411 AL +D A ++TGIAGP GG+ KPVG V + D + R G+R I+E + Sbjct 338 ALSNSLSDIALSVTGIAGPGGGSETKPVGLVYIGIATKDN-VESFEFRFSGDRLRIKEMT 396 Query 412 TTVAMHLLRRTL 423 + A+++LR+ + Sbjct 397 SKAALNILRKKI 408 >gi|153956017|ref|YP_001396782.1| competence damage-inducible protein A [Clostridium kluyveri DSM 555] gi|219856357|ref|YP_002473479.1| hypothetical protein CKR_3014 [Clostridium kluyveri NBRC 12016] gi|189082441|sp|A5N2R5.1|CINA_CLOK5 RecName: Full=Putative competence-damage inducible protein gi|254763746|sp|B9E6E0.1|CINA_CLOK1 RecName: Full=Putative competence-damage inducible protein gi|146348875|gb|EDK35411.1| Hypothetical protein CKL_3409 [Clostridium kluyveri DSM 555] gi|219570081|dbj|BAH08065.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length=410 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 151/431 (36%), Positives = 236/431 (55%), Gaps = 36/431 (8%) Query 6 RAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAEQGV 65 ++ I+ GTE+L G + + N +I+ L LG+E+ H ++ GD P + +L+ E+ Sbjct 2 KSEILCVGTEILLGDIVNTNSQFISKELANLGIEVYHQSVVGDNPQRLLDELKLGFERS- 60 Query 66 DLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDS 125 D+I+T+GGLGPT DD+T E A++ RELVLD + + + MG++ + Sbjct 61 DIIITTGGLGPTQDDLTKETGAKFFNRELVLDKKSLKELKEHFNR-MGKSYS-------- 111 Query 126 IRAANRKQAMIPAGSQVI-DPVGTAPGLVVPGRPAVM-VLPGPPRELQPIWSKAIQTAPV 183 N KQA P GS + +P GTAPG + + ++ VLPGPPRE +P++ + P+ Sbjct 112 -DGNNIKQAYFPKGSTIFPNPYGTAPGCAIEDKGKILIVLPGPPRETKPMFKNYV--IPL 168 Query 184 QDAIAGRTTYRQETIRIFGLPESSLADTL-----RDAEAAIPGF----DLVEITTCLRRG 234 + + +T+RI+GL ES++A+ + + + D++ T Sbjct 169 LKKYSNGII-KSKTLRIYGLGESAMAERVSPFIENSTNPTVAPYAKEEDIILRITARAAE 227 Query 235 EIEMVTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLL--TGRRIATAESC 292 E E ++ EP V +L ++L G VY ED ++E++ +LL G ++ AESC Sbjct 228 EKEALSLIEP----VEIELRKIL----GVNVYGEDDVKMEEVLGRLLIDKGYTLSCAESC 279 Query 293 TAGLLAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGA 352 T GL+A++L + PG SK VVAYSNEAK + LGV ++ +GAVS VA+ MA G Sbjct 280 TGGLIASKLINYPGISKAFKEGVVAYSNEAKIKRLGVKKDTLDKYGAVSPEVAKEMAIGI 339 Query 353 LQGFGADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERST 412 + D + TGIAGP GGTPEKP+G V + L + G + +R G R IR+R+T Sbjct 340 AETSNTDIGISTTGIAGPDGGTPEKPIGLV-YLGLYNRGEIKVKELRHAGTRDMIRKRAT 398 Query 413 TVAMHLLRRTL 423 A+ +RR + Sbjct 399 MNALDWIRRQI 409 >gi|312127955|ref|YP_003992829.1| competence/damage-inducible protein cina [Caldicellulosiruptor hydrothermalis 108] gi|311777974|gb|ADQ07460.1| competence/damage-inducible protein CinA [Caldicellulosiruptor hydrothermalis 108] Length=411 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 145/428 (34%), Positives = 239/428 (56%), Gaps = 33/428 (7%) Query 7 AGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAEQGVD 66 A I+ GTE+L G++ + N ++A +L ELG++L T GD ++ + +A + D Sbjct 3 AEIICVGTELLLGQILNTNSQYLAQKLAELGIDLYFQTTVGDNMERLKMAID-IATKRSD 61 Query 67 LIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDSI 126 +++ +GGLGPT+DD+T E VA Y G LVLD+++ RI + ++ + P I Sbjct 62 ILIFTGGLGPTSDDITKEAVADYFGLTLVLDEDILRRIESFFERRQVKMPQI-------- 113 Query 127 RAANRKQAMIPAGSQVI-DPVGTAPGLVVP--GRPAVMVLPGPPRELQPIWSKAIQTAPV 183 N+KQA +P G++V+ + GTAPGL++ G+ A++ LPGPP E+QP++ + + P Sbjct 114 ---NKKQAYVPEGAKVLHNKNGTAPGLIIEKDGKIAIL-LPGPPFEMQPMFEE--EVLPY 167 Query 184 QDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRF- 242 + + + Y + ++ G+ ESS+ + L+D + T L E+ R Sbjct 168 LEKFSKQKIYSR-VLKFIGIGESSIEEALKDL-----ILSQTDPTMALYAKPFEVELRIT 221 Query 243 -----EPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRR--IATAESCTAG 295 E +A + + +R+R G +Y D ++E+V LLT ++ ++ AESCT G Sbjct 222 TKKESEDSAKSLLQSMEDKIRERLGEYIYGVDRQLLEEVVIGLLTEKKLKVSVAESCTGG 281 Query 296 LLAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQG 355 L+ +LT+ PG+S+ + YSNEAK +LLGV +++ HGAVS A+ MA GAL Sbjct 282 LICNKLTNVPGASEVFDRGFIVYSNEAKMKLLGVPEQVLKEHGAVSHQTARYMAQGALSN 341 Query 356 FGADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVA 415 A A ++TGIAGP GG+ KPVG V + D + R G+R I+E ++ A Sbjct 342 SLAHIALSVTGIAGPGGGSETKPVGLVYIGIATKDN-VESFEFRFSGDRLRIKEMTSKAA 400 Query 416 MHLLRRTL 423 +++LR+ + Sbjct 401 LNILRKKI 408 >gi|222100856|ref|YP_002535424.1| CinA-like protein [Thermotoga neapolitana DSM 4359] gi|254813936|sp|B9KAS5.1|CINAL_THENN RecName: Full=CinA-like protein gi|221573246|gb|ACM24058.1| CinA-like protein [Thermotoga neapolitana DSM 4359] Length=408 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 150/427 (36%), Positives = 236/427 (56%), Gaps = 34/427 (7%) Query 6 RAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAEQGV 65 +A I+ G+E+L G + +RN ++ L LG + ++ GD DI ++R + + V Sbjct 3 KAAIITVGSELLEGLILNRNAQFLCQELKNLGYRVIKVSTVGDHLEDIAEEVRSLLPE-V 61 Query 66 DLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDS 125 L++ +GGLGPT DD+T E VA+ R+L+LD L+ +I +KK + P+ N + Sbjct 62 HLLILTGGLGPTKDDLTREAVAKALNRKLLLDYNLKTKIEEKVKKYHSKIPS----NIE- 116 Query 126 IRAANRKQAMIPAGSQVID-PVGTAPG--LVVPGRPAVMVLPGPPRELQPIWSKAIQTAP 182 KQA++ G++VID PVG+APG L V G+ V++LPGPP+EL P++ Sbjct 117 ------KQALVIEGAKVIDNPVGSAPGQLLEVDGK-KVILLPGPPKELIPMFE------S 163 Query 183 VQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGE---IEMV 239 +++ + + Q ++ + +PE+ L D L++ + D VE+ T E + + Sbjct 164 LKELLKTPHAFYQVVLKYYSIPEAVLEDLLKEI---LYSQDRVEVATMADHVEGVRLRLT 220 Query 240 TRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLL--TGRRIATAESCTAGLL 297 T E + +L + ++ G +Y + ++E+V +LL + +A AESCT G+L Sbjct 221 TSAEHR--EFLDELVEKILEKTGEYLYGMNDEKMEEVVVRLLKENKKTLAVAESCTGGML 278 Query 298 AARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFG 357 ++ + + PG+S G VVAYSNE K +LGV + +GAVSE Q M G + Sbjct 279 SSLVVNVPGASDVFIGGVVAYSNELKKSILGVKEDTLRKYGAVSEQCVQEMTEGLKKLTE 338 Query 358 ADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMH 417 AD AI+GIAGPSGGTP KPVGTV F L + +T R G+R+ IR RS +A+ Sbjct 339 ADICVAISGIAGPSGGTPTKPVGTV-FIDLFEQNHSTVR-YNFSGDRNTIRTRSAMMALE 396 Query 418 LLRRTLS 424 LR+ L Sbjct 397 NLRKHLK 403 >gi|344996612|ref|YP_004798955.1| competence/damage-inducible protein CinA [Caldicellulosiruptor lactoaceticus 6A] gi|343964831|gb|AEM73978.1| competence/damage-inducible protein CinA [Caldicellulosiruptor lactoaceticus 6A] Length=411 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 145/428 (34%), Positives = 238/428 (56%), Gaps = 33/428 (7%) Query 7 AGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAEQGVD 66 A I+ GTE+L G++ + N ++A +L ELG++L T GD ++ + +A + D Sbjct 3 AEIICVGTELLLGQILNTNSQYLAQKLAELGIDLYFQTTVGDNMERLKMAID-IATKRSD 61 Query 67 LIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDSI 126 +++ +GGLGPT+DD+T E VA Y G LVLD+++ RI ++ + P I Sbjct 62 ILIFTGGLGPTSDDITKEAVADYFGLALVLDEDVLRRIEKFFERRQVKMPEI-------- 113 Query 127 RAANRKQAMIPAGSQVI-DPVGTAPGLVVP--GRPAVMVLPGPPRELQPIWSKAIQTAPV 183 N+KQA +P G++V+ + GTAPGL++ G+ A++ LPGPP E+QP++ + + P Sbjct 114 ---NKKQAYVPKGAKVLHNKNGTAPGLIIEKDGKIAIL-LPGPPFEMQPMFEEGV--LPY 167 Query 184 QDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRF- 242 + + + Y + ++ G+ ESS+ + L+D + T L E+ R Sbjct 168 LEKFSKQKIYSR-VLKFVGIGESSIEEALKDL-----ILSQTDPTMALYAKPFEVELRIT 221 Query 243 -----EPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRR--IATAESCTAG 295 E A + + +R+R G +Y D ++E+V LL ++ ++ AESCT G Sbjct 222 TKKESEECAKSLLQSMENRIRERLGEYIYGVDRQLLEEVVIGLLAEKKLKVSVAESCTGG 281 Query 296 LLAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQG 355 L+ +LT+ PG+S+ + YSNEAK +LLGV +++ HGAVS A+ MA GAL Sbjct 282 LICNKLTNVPGASEVFDRGFIVYSNEAKMKLLGVPEQVLKEHGAVSSQTARYMAQGALSN 341 Query 356 FGADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVA 415 AD A ++TGIAGP GG+ KPVG V + D + + R G+R I+E ++ A Sbjct 342 SLADIALSVTGIAGPGGGSETKPVGLVYIGIATKD-YSESFEFRFSGDRLRIKEMTSKAA 400 Query 416 MHLLRRTL 423 +++LR+ + Sbjct 401 LNILRKKI 408 >gi|312793175|ref|YP_004026098.1| competence/damage-inducible protein cina [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180315|gb|ADQ40485.1| competence/damage-inducible protein CinA [Caldicellulosiruptor kristjanssonii 177R1B] Length=411 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 145/428 (34%), Positives = 238/428 (56%), Gaps = 33/428 (7%) Query 7 AGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAEQGVD 66 A I+ GTE+L G++ + N ++A +L ELG++L T GD ++ + +A + D Sbjct 3 AEIICVGTELLLGQILNTNSQYLAQKLAELGIDLYFQTTVGDNMERLKMAID-IATKRSD 61 Query 67 LIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDSI 126 +++ +GGLGPT+DD+T E VA Y G LVLD+++ RI ++ + P I Sbjct 62 ILIFTGGLGPTSDDITKEAVADYFGLALVLDEDVLRRIEKFFERRQVKMPEI-------- 113 Query 127 RAANRKQAMIPAGSQVI-DPVGTAPGLVVP--GRPAVMVLPGPPRELQPIWSKAIQTAPV 183 N+KQA +P G++V+ + GTAPGL++ G+ A++ LPGPP E+QP++ + + P Sbjct 114 ---NKKQAYVPEGAKVLHNKNGTAPGLIIEKDGKIAIL-LPGPPFEMQPMFEEGV--LPY 167 Query 184 QDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRF- 242 + + + Y + ++ G+ ESS+ + L+D + T L E+ R Sbjct 168 LEKFSKQKIYSR-VLKFVGIGESSIEEALKDL-----ILSQTDPTMALYAKPFEVELRIT 221 Query 243 -----EPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRR--IATAESCTAG 295 E A + + +R+R G +Y D ++E+V LL ++ ++ AESCT G Sbjct 222 TKKESEECAKSLLQSMENRIRERLGEYIYGVDRQLLEEVVIGLLAEKKLKVSVAESCTGG 281 Query 296 LLAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQG 355 L+ +LT+ PG+S+ + YSNEAK +LLGV +++ HGAVS A+ MA GAL Sbjct 282 LICNKLTNVPGASEVFDRGFIVYSNEAKMKLLGVPEQVLKEHGAVSSQTARYMAQGALSN 341 Query 356 FGADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVA 415 AD A ++TGIAGP GG+ KPVG V + D + + R G+R I+E ++ A Sbjct 342 SLADIALSVTGIAGPGGGSETKPVGLVYIGIATKD-YSESFEFRFSGDRLRIKEMTSKAA 400 Query 416 MHLLRRTL 423 +++LR+ + Sbjct 401 LNILRKKI 408 >gi|197119989|ref|YP_002140416.1| competence/damage-inducible protein CinA [Geobacter bemidjiensis Bem] gi|238690869|sp|B5ED03.1|CINAL_GEOBB RecName: Full=CinA-like protein gi|197089349|gb|ACH40620.1| competence/damage-inducible protein CinA [Geobacter bemidjiensis Bem] Length=414 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 160/425 (38%), Positives = 235/425 (56%), Gaps = 29/425 (6%) Query 6 RAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELA-HITICGDRPADIEAQLRFMAEQG 64 R ++ G E+L+G V D N IADRL + G + H+T+ P D EA + E G Sbjct 2 RVAVLSIGDELLSGEVVDTNASHIADRLFQAGGRVERHLTV----PDDAEAIASALTELG 57 Query 65 V--DLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPAN 122 D ++ +GGLGPT DD+T E AR G EL L E + + +++ G Sbjct 58 ARSDAVIVTGGLGPTPDDLTAEAAARAAGTELELSSEALDHLERFAQRITG--------- 108 Query 123 FDSIRAANRKQAMIPAGSQVI-DPVGTAPGLVVP-GRPAVMVLPGPPRELQPIWSKAIQT 180 + ANR+QA++P G ++I +P+GTA G VV G+ +PG P E++ + + + Sbjct 109 --ELHPANRRQALLPKGCRLIPNPLGTALGFVVRIGQADCFFMPGVPYEMERMLEETVLP 166 Query 181 APVQDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVT 240 AG +++ T+++FG+ E+++A+ L E AIP V++ C++ EI ++ Sbjct 167 ELTGRFEAG---WQRVTLKLFGIAEAAIAELL---EGAIPEGSPVQLAYCVKFPEIHLIL 220 Query 241 RFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLL--TGRRIATAESCTAGLLA 298 R + A Q A LR R +++ED +D+ +A LL +G +A AESCT G++A Sbjct 221 RATASDAPFLQQAAGELRQRLSAYLFAEDREEMDDRLALLLRESGLTLALAESCTGGMIA 280 Query 299 ARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGA 358 AR+T GSS Y V YSNEAK ++L V LI HGAVS VA+AMA GA + G+ Sbjct 281 ARITAVAGSSAYFLEGNVTYSNEAKTRMLQVPAPLIAEHGAVSAEVARAMAVGAREAAGS 340 Query 359 DTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVAMHL 418 D A ++TGIAGP GGTPEKPVGTV + L+D G G+R +R + A+ Sbjct 341 DLALSVTGIAGPDGGTPEKPVGTV-YLALVDQGSCRVERFNFQGDRDRVRSITCFTALDW 399 Query 419 LRRTL 423 LRR L Sbjct 400 LRRYL 404 >gi|312622754|ref|YP_004024367.1| competence/damage-inducible protein cina [Caldicellulosiruptor kronotskyensis 2002] gi|312203221|gb|ADQ46548.1| competence/damage-inducible protein CinA [Caldicellulosiruptor kronotskyensis 2002] Length=411 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 144/432 (34%), Positives = 242/432 (57%), Gaps = 41/432 (9%) Query 7 AGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAEQGVD 66 A I+ GTE+L G++ + N ++A +L ELG++L T GD ++ + +A + D Sbjct 3 AEIICVGTELLLGQILNTNSQYLAQKLAELGIDLYFQTTVGDNMERLKMAID-IATKRAD 61 Query 67 LIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDSI 126 +++ +GGLGPT+DD+T E VA Y G +LVLD+++ RI ++ P I Sbjct 62 ILIFTGGLGPTSDDITKEAVADYFGLKLVLDEDVLRRIEKFFERRQVMMPQI-------- 113 Query 127 RAANRKQAMIPAGSQVI-DPVGTAPGLVVP--GRPAVMVLPGPPRELQPIWSKAIQTAPV 183 N+KQA +P ++++ + GTAPGL++ G+ A++ LPGPP E+QP++ + + P Sbjct 114 ---NKKQAYVPENAKILHNKNGTAPGLIIEKDGKIAIL-LPGPPFEMQPMFEE--EVLPY 167 Query 184 QDAIAGRTTYRQETIRIFGLPESSLADTLRD----------AEAAIPGFDLVEITTCLRR 233 + + + Y + ++ G+ ESS+ + L+D A A P F+ VE+ ++ Sbjct 168 LEKFSKQKIYSR-VLKFVGIGESSIEEALKDLILSQTDPTMALYAKP-FE-VELRITTKK 224 Query 234 GEIEMVTRFEPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRR--IATAES 291 +E+ A + + +R+R G +Y D ++E+V LL ++ ++ AES Sbjct 225 ESVEL-------AKSLLQSMEYRIRERLGEYIYGVDRQLLEEVVIGLLKEKKLKVSVAES 277 Query 292 CTAGLLAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAG 351 CT GL+ +LT+ PG+S+ + YSNEAK +LLGV +++ HGAVS A+ MA G Sbjct 278 CTGGLICNKLTNVPGASEVFDRGFIVYSNEAKMKLLGVPEQVLKEHGAVSSQTARFMAQG 337 Query 352 ALQGFGADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERS 411 AL AD A ++TGIAGP GG+ KPVG V + + + R G+R I+E + Sbjct 338 ALSNSLADIALSVTGIAGPGGGSETKPVGLVYIGIATKEN-VESFEFRFSGDRLRIKEMT 396 Query 412 TTVAMHLLRRTL 423 + A+++LR+ + Sbjct 397 SKAALNILRKKI 408 >gi|300857068|ref|YP_003782052.1| putative competence-damage inducible protein [Clostridium ljungdahlii DSM 13528] gi|300437183|gb|ADK16950.1| predicted competence-damage inducible protein [Clostridium ljungdahlii DSM 13528] Length=412 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 142/428 (34%), Positives = 232/428 (55%), Gaps = 30/428 (7%) Query 6 RAGIVITGTEVLTGRVQDRNGPWIADRLLELGVELAHITICGDRPADIEAQLRFMAEQGV 65 +A I+ GTE+L G + + N +I+ L +LG+E+ H ++ GD P + + R E+ Sbjct 2 KAEILCVGTEILLGDIVNTNAQFISKGLADLGIEVYHQSVVGDNPQRLLDEFRKSFER-T 60 Query 66 DLIVTSGGLGPTADDMTVEVVARYCGRELVLDDELENRIANILKKLMGRNPAIEPANFDS 125 D+I+T+GGLGPT DD+T E A Y RE++LD ++ + KK MG++ + Sbjct 61 DIIITTGGLGPTQDDLTKETGAEYFNREMILDKNSLTQLESYFKK-MGKS---------N 110 Query 126 IRAANRKQAMIPAGSQVI-DPVGTAPGLVVPGRPAVMV-LPGPPRELQPIWSKAIQTAPV 183 + N KQA P G+ + +P GTAPG + +++ LPGPP+E +P++ + P Sbjct 111 LEGNNIKQAYFPEGASIFPNPHGTAPGCCMEQNGKILIILPGPPKEAKPMFENYV--VPF 168 Query 184 QDAIAGRTTYRQETIRIFGLPESSLADTLRDAEAAIPGFDLVEITTCLRRGEIEMVTRF- 242 + + +T+R+ G+ ESS+A+++ D + V T E + + R Sbjct 169 LKKYSNGVI-KSKTLRVCGIGESSMAESVSDLIN-----NSVNPTVAPYAKENDTILRIT 222 Query 243 -----EPNAAQVYTQLARLLRDRHGHQVYSEDGASVDELVAKLLTGRR--IATAESCTAG 295 E A ++ + +R++ G +Y E+ +++E++ KLL + I++AESCT G Sbjct 223 ARANTEEEAVELIKPIESKIREKLGINIYGENDDTMEEVIGKLLINKELTISSAESCTGG 282 Query 296 LLAARLTDRPGSSKYVAGAVVAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQG 355 L+AARL + PG S V Y+NEAK + LGV ++ AVS A+ MA G + Sbjct 283 LIAARLVNYPGISAVFKEGAVTYTNEAKMKRLGVKKDTLDKFTAVSSETAKEMAEGIAKT 342 Query 356 FGADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERSTTVA 415 D A TG+AGP GGT E PVG V + L +G+T + + G+R +R+R+T A Sbjct 343 ANTDIGIATTGVAGPGGGTYENPVGLV-YIGLYINGKTYVKKCQYSGSRDVVRQRATMTA 401 Query 416 MHLLRRTL 423 + L+RR + Sbjct 402 LDLIRRHI 409 Lambda K H 0.318 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 880492674816 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40