BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1903
Length=134
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609040|ref|NP_216419.1| hypothetical protein Rv1903 [Mycoba... 259 7e-68
gi|15841374|ref|NP_336411.1| hypothetical protein MT1954 [Mycoba... 259 1e-67
gi|289574587|ref|ZP_06454814.1| conserved membrane protein [Myco... 258 2e-67
gi|340626912|ref|YP_004745364.1| hypothetical protein MCAN_19191... 254 3e-66
gi|183982805|ref|YP_001851096.1| hypothetical protein MMAR_2799 ... 211 2e-53
gi|342859556|ref|ZP_08716209.1| membrane protein of unknown func... 210 6e-53
gi|296164928|ref|ZP_06847484.1| membrane spanning protein [Mycob... 208 2e-52
gi|41407726|ref|NP_960562.1| hypothetical protein MAP1628 [Mycob... 207 3e-52
gi|240172579|ref|ZP_04751238.1| hypothetical protein MkanA1_2491... 207 3e-52
gi|254823490|ref|ZP_05228491.1| hypothetical protein MintA_26408... 206 7e-52
gi|15828090|ref|NP_302353.1| hypothetical protein ML2012 [Mycoba... 197 5e-49
gi|118469640|ref|YP_889784.1| membrane spanning protein [Mycobac... 196 9e-49
gi|108801301|ref|YP_641498.1| membrane protein [Mycobacterium sp... 196 9e-49
gi|254775277|ref|ZP_05216793.1| hypothetical protein MaviaA2_114... 196 1e-48
gi|126437282|ref|YP_001072973.1| membrane protein [Mycobacterium... 194 4e-48
gi|118618333|ref|YP_906665.1| hypothetical protein MUL_2924 [Myc... 194 4e-48
gi|333989529|ref|YP_004522143.1| hypothetical protein JDM601_088... 193 8e-48
gi|120405834|ref|YP_955663.1| hypothetical protein Mvan_4884 [My... 192 1e-47
gi|145222441|ref|YP_001133119.1| membrane protein [Mycobacterium... 188 2e-46
gi|315442888|ref|YP_004075767.1| hypothetical protein Mspyr1_125... 187 4e-46
gi|343927700|ref|ZP_08767168.1| hypothetical protein GOALK_097_0... 163 1e-38
gi|262203548|ref|YP_003274756.1| hypothetical protein Gbro_3678 ... 153 9e-36
gi|326383226|ref|ZP_08204914.1| membrane protein of unknown func... 141 2e-32
gi|332668774|ref|YP_004451781.1| hypothetical protein Celf_0249 ... 133 1e-29
gi|296131223|ref|YP_003638473.1| hypothetical protein Cfla_3396 ... 125 2e-27
gi|336322184|ref|YP_004602152.1| hypothetical protein Celgi_3093... 123 1e-26
gi|296131233|ref|YP_003638483.1| hypothetical protein Cfla_3407 ... 121 4e-26
gi|269796859|ref|YP_003316314.1| hypothetical protein Sked_35940... 111 5e-23
gi|229822447|ref|YP_002883973.1| hypothetical protein Bcav_3970 ... 100 7e-20
gi|256833677|ref|YP_003162404.1| hypothetical protein Jden_2469 ... 100 7e-20
gi|84495452|ref|ZP_00994571.1| putative membrane protein [Janiba... 98.2 3e-19
gi|291299719|ref|YP_003510997.1| hypothetical protein Snas_2213 ... 97.8 4e-19
gi|238062049|ref|ZP_04606758.1| hypothetical protein MCAG_03015 ... 97.1 8e-19
gi|331699225|ref|YP_004335464.1| membrane protein [Pseudonocardi... 95.1 3e-18
gi|302864692|ref|YP_003833329.1| membrane protein [Micromonospor... 95.1 3e-18
gi|220914555|ref|YP_002489864.1| hypothetical protein Achl_3822 ... 93.2 1e-17
gi|290959046|ref|YP_003490228.1| hypothetical protein SCAB_46271... 91.7 3e-17
gi|308178634|ref|YP_003918040.1| hypothetical protein AARI_28730... 91.7 3e-17
gi|116672572|ref|YP_833505.1| membrane hypothetical protein [Art... 90.5 8e-17
gi|317123417|ref|YP_004097529.1| hypothetical protein Intca_0245... 90.5 8e-17
gi|325003285|ref|ZP_08124397.1| hypothetical protein PseP1_31162... 90.1 1e-16
gi|300780052|ref|ZP_07089908.1| integral membrane protein [Coryn... 90.1 1e-16
gi|319950857|ref|ZP_08024740.1| membrane protein [Dietzia cinnam... 89.4 2e-16
gi|336115950|ref|YP_004570716.1| hypothetical protein MLP_02990 ... 89.4 2e-16
gi|1017817|gb|AAC43613.1| membrane spanning protein [Streptomyce... 87.8 5e-16
gi|119962418|ref|YP_949572.1| hypothetical protein AAur_3895 [Ar... 87.8 5e-16
gi|21222328|ref|NP_628107.1| hypothetical protein SCO3922 [Strep... 87.8 5e-16
gi|312141057|ref|YP_004008393.1| integral membrane protein [Rhod... 87.4 7e-16
gi|163839386|ref|YP_001623791.1| hypothetical protein RSal33209_... 87.0 9e-16
gi|297200893|ref|ZP_06918290.1| membrane spanning protein [Strep... 86.7 1e-15
>gi|15609040|ref|NP_216419.1| hypothetical protein Rv1903 [Mycobacterium tuberculosis H37Rv]
gi|31793096|ref|NP_855589.1| hypothetical protein Mb1938 [Mycobacterium bovis AF2122/97]
gi|121637809|ref|YP_978032.1| hypothetical protein BCG_1942 [Mycobacterium bovis BCG str. Pasteur
1173P2]
72 more sequence titles
Length=134
Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 134/134 (100%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI
Sbjct 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL
Sbjct 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
Query 121 SLLARDFRRVTRAH 134
SLLARDFRRVTRAH
Sbjct 121 SLLARDFRRVTRAH 134
>gi|15841374|ref|NP_336411.1| hypothetical protein MT1954 [Mycobacterium tuberculosis CDC1551]
gi|13881608|gb|AAK46225.1| membrane protein, putative [Mycobacterium tuberculosis CDC1551]
Length=167
Score = 259 bits (661), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 134/134 (100%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI
Sbjct 34 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 93
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL
Sbjct 94 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 153
Query 121 SLLARDFRRVTRAH 134
SLLARDFRRVTRAH
Sbjct 154 SLLARDFRRVTRAH 167
>gi|289574587|ref|ZP_06454814.1| conserved membrane protein [Mycobacterium tuberculosis K85]
gi|339631956|ref|YP_004723598.1| hypothetical protein MAF_19260 [Mycobacterium africanum GM041182]
gi|289539018|gb|EFD43596.1| conserved membrane protein [Mycobacterium tuberculosis K85]
gi|339331312|emb|CCC26996.1| putative conserved membrane protein [Mycobacterium africanum
GM041182]
Length=134
Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 133/134 (99%), Positives = 133/134 (99%), Gaps = 0/134 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI
Sbjct 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL
Sbjct 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
Query 121 SLLARDFRRVTRAH 134
SLLARDFRRV RAH
Sbjct 121 SLLARDFRRVARAH 134
>gi|340626912|ref|YP_004745364.1| hypothetical protein MCAN_19191 [Mycobacterium canettii CIPT
140010059]
gi|340005102|emb|CCC44251.1| putative conserved membrane protein [Mycobacterium canettii CIPT
140010059]
Length=134
Score = 254 bits (648), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 132/134 (99%), Positives = 132/134 (99%), Gaps = 0/134 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
MVPFLMRAAVTGFALWVVTL VPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI
Sbjct 1 MVPFLMRAAVTGFALWVVTLCVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
LSIPLYILTLGLFHVVVNASMLWLTAWITEHTT WGLQIDHFWWTAIWAAILLSIVSWIL
Sbjct 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTGWGLQIDHFWWTAIWAAILLSIVSWIL 120
Query 121 SLLARDFRRVTRAH 134
SLLARDFRRVTRAH
Sbjct 121 SLLARDFRRVTRAH 134
>gi|183982805|ref|YP_001851096.1| hypothetical protein MMAR_2799 [Mycobacterium marinum M]
gi|183176131|gb|ACC41241.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=133
Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/133 (82%), Positives = 117/133 (88%), Gaps = 0/133 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
M PFL+RAAVTGFALWVVTL + G+RF GGDTTL+++ IIFVVAVIFGLVNA IKPIVQ
Sbjct 1 MGPFLLRAAVTGFALWVVTLCISGIRFVGGDTTLEKIGIIFVVAVIFGLVNATIKPIVQF 60
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
LSIPLYILTLGL HVV+NA MLW+TA ITE TT WGLQIDHFWWTAIWAAILLSIVSW+L
Sbjct 61 LSIPLYILTLGLIHVVINAFMLWITARITEDTTRWGLQIDHFWWTAIWAAILLSIVSWLL 120
Query 121 SLLARDFRRVTRA 133
SLL RD RRV R
Sbjct 121 SLLTRDLRRVARG 133
>gi|342859556|ref|ZP_08716209.1| membrane protein of unknown function [Mycobacterium colombiense
CECT 3035]
gi|342132688|gb|EGT85908.1| membrane protein of unknown function [Mycobacterium colombiense
CECT 3035]
Length=188
Score = 210 bits (534), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 107/125 (86%), Positives = 116/125 (93%), Gaps = 0/125 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
M PFL+RAA+TG ALW+VTLFV G+ F GGDT L+RV IIFVVAVIFGLVNAFIKPIVQI
Sbjct 58 MGPFLLRAALTGLALWIVTLFVHGLTFVGGDTKLERVGIIFVVAVIFGLVNAFIKPIVQI 117
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
LSIPLYILTLGLFHVVVNA MLW+TAWITEHTTHWGLQIDHFWWTAIWAAI+LSIVSW+L
Sbjct 118 LSIPLYILTLGLFHVVVNALMLWITAWITEHTTHWGLQIDHFWWTAIWAAIVLSIVSWLL 177
Query 121 SLLAR 125
SL+ R
Sbjct 178 SLVIR 182
>gi|296164928|ref|ZP_06847484.1| membrane spanning protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295899770|gb|EFG79220.1| membrane spanning protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=130
Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/129 (84%), Positives = 116/129 (90%), Gaps = 0/129 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
M PFL+RAA+TGFALWVVT FV G+ F GGDT L+RV IIFVVAVIFGLVNAFIKPIVQ+
Sbjct 1 MGPFLLRAALTGFALWVVTKFVHGITFIGGDTKLERVGIIFVVAVIFGLVNAFIKPIVQL 60
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
LSIPLYILTLGLFHVVVNA MLW+TA ITEHTTHWGLQIDHFWWTAIWAAI LSIVSW+L
Sbjct 61 LSIPLYILTLGLFHVVVNALMLWITARITEHTTHWGLQIDHFWWTAIWAAIALSIVSWLL 120
Query 121 SLLARDFRR 129
SL+ RD R
Sbjct 121 SLIIRDVSR 129
>gi|41407726|ref|NP_960562.1| hypothetical protein MAP1628 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118466499|ref|YP_881984.1| hypothetical protein MAV_2797 [Mycobacterium avium 104]
gi|41396079|gb|AAS03945.1| hypothetical protein MAP_1628 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118167786|gb|ABK68683.1| membrane conserved hypothetical protein [Mycobacterium avium
104]
gi|336457386|gb|EGO36395.1| putative membrane protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=129
Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/125 (84%), Positives = 116/125 (93%), Gaps = 0/125 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
M PF++RAA+TGFALW+VTLFV G+ F GGDT LQRV IIFVVAVIFGLVNAFIKPIVQI
Sbjct 1 MGPFVLRAALTGFALWIVTLFVHGLTFVGGDTKLQRVGIIFVVAVIFGLVNAFIKPIVQI 60
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
LSIPLYILTLGL H+V+NA MLW+TAWITEHTTHWGLQIDHFWWTAIWAAI+LSIVSW+L
Sbjct 61 LSIPLYILTLGLIHIVINALMLWITAWITEHTTHWGLQIDHFWWTAIWAAIVLSIVSWLL 120
Query 121 SLLAR 125
SL+ R
Sbjct 121 SLVIR 125
>gi|240172579|ref|ZP_04751238.1| hypothetical protein MkanA1_24915 [Mycobacterium kansasii ATCC
12478]
Length=132
Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/129 (83%), Positives = 117/129 (91%), Gaps = 0/129 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
M PFL+RAA+TGFALWVVTL VPG+RF GGDTTLQRV IIFVVAVIFGLVNA IKPIVQ+
Sbjct 1 MGPFLVRAALTGFALWVVTLCVPGVRFVGGDTTLQRVLIIFVVAVIFGLVNAIIKPIVQL 60
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
LSIPLYILTLGLFH+V+NA MLW+TA IT+ TTHWGLQIDHFWW+AIWAAILLSIVSW+L
Sbjct 61 LSIPLYILTLGLFHIVINAFMLWITAQITKDTTHWGLQIDHFWWSAIWAAILLSIVSWLL 120
Query 121 SLLARDFRR 129
SLL R R
Sbjct 121 SLLTRRAAR 129
>gi|254823490|ref|ZP_05228491.1| hypothetical protein MintA_26408 [Mycobacterium intracellulare
ATCC 13950]
Length=129
Score = 206 bits (525), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 105/125 (84%), Positives = 116/125 (93%), Gaps = 0/125 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
M PFL+RAA+TGFALW+VTLFV G+ F GG T L+RV IIFVVAVIFGLVNAFIKPIVQI
Sbjct 1 MGPFLVRAALTGFALWIVTLFVHGLSFVGGSTRLERVGIIFVVAVIFGLVNAFIKPIVQI 60
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
LSIPLYI+TLGLFHVV+NA MLW+TAWITEHTTHWGLQIDHFWWTAIWAAI+LSIVSW+L
Sbjct 61 LSIPLYIVTLGLFHVVINALMLWITAWITEHTTHWGLQIDHFWWTAIWAAIVLSIVSWLL 120
Query 121 SLLAR 125
SL+ R
Sbjct 121 SLIIR 125
>gi|15828090|ref|NP_302353.1| hypothetical protein ML2012 [Mycobacterium leprae TN]
gi|221230567|ref|YP_002503983.1| hypothetical protein MLBr_02012 [Mycobacterium leprae Br4923]
gi|2276323|emb|CAA04162.1| putative membrane protein [Mycobacterium leprae]
gi|4582354|emb|CAB40302.1| putative membrane protein [Mycobacterium leprae]
gi|13093644|emb|CAC30967.1| putative membrane protein [Mycobacterium leprae]
gi|219933674|emb|CAR72109.1| putative membrane protein [Mycobacterium leprae Br4923]
Length=139
Score = 197 bits (501), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/129 (81%), Positives = 113/129 (88%), Gaps = 0/129 (0%)
Query 3 PFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILS 62
PFL+RAA+T ALWVVT FV G+ F GG+TTLQRV IIFVVAVIFGLVNA IKPIVQILS
Sbjct 9 PFLVRAALTSLALWVVTQFVHGLSFVGGNTTLQRVGIIFVVAVIFGLVNAIIKPIVQILS 68
Query 63 IPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILSL 122
IPLYILTLGLFHVVVNA MLW+TA IT +TTHWGLQIDHFWWTAIWAAI+LSIVSW+LS+
Sbjct 69 IPLYILTLGLFHVVVNALMLWITARITGNTTHWGLQIDHFWWTAIWAAIVLSIVSWVLSM 128
Query 123 LARDFRRVT 131
L R R T
Sbjct 129 LIRGAGRRT 137
>gi|118469640|ref|YP_889784.1| membrane spanning protein [Mycobacterium smegmatis str. MC2 155]
gi|118170927|gb|ABK71823.1| membrane spanning protein [Mycobacterium smegmatis str. MC2 155]
Length=129
Score = 196 bits (498), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 99/123 (81%), Positives = 111/123 (91%), Gaps = 0/123 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
M FL+RAA+TGFALWVVTL VPGM F GGD+TL RV IIFVVAVIFGLVNA IKPIVQI
Sbjct 1 MSSFLLRAALTGFALWVVTLIVPGMSFVGGDSTLTRVGIIFVVAVIFGLVNAIIKPIVQI 60
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
LSIPLYILTLGLFH+V+NA MLW+T+ IT+HTTHWGL ID FWWTAIWAAI+LS+VSW+L
Sbjct 61 LSIPLYILTLGLFHIVINALMLWITSQITDHTTHWGLHIDDFWWTAIWAAIVLSVVSWLL 120
Query 121 SLL 123
SL+
Sbjct 121 SLV 123
>gi|108801301|ref|YP_641498.1| membrane protein [Mycobacterium sp. MCS]
gi|119870452|ref|YP_940404.1| membrane protein [Mycobacterium sp. KMS]
gi|108771720|gb|ABG10442.1| membrane protein of unknown function [Mycobacterium sp. MCS]
gi|119696541|gb|ABL93614.1| membrane protein of unknown function [Mycobacterium sp. KMS]
Length=129
Score = 196 bits (498), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 97/126 (77%), Positives = 111/126 (89%), Gaps = 0/126 (0%)
Query 4 FLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILSI 63
FL+RAAVTG ALW+VT FV GM F GG+ TLQRV IIFVVAV+FGLVNA +KPIVQILSI
Sbjct 3 FLLRAAVTGVALWLVTQFVSGMEFVGGENTLQRVGIIFVVAVVFGLVNAIVKPIVQILSI 62
Query 64 PLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILSLL 123
PLY++TLGLFHVVVNA MLWLTAWITEHTTHWGL ID FWWTA+WA I+LSIVSW+LS+L
Sbjct 63 PLYVVTLGLFHVVVNALMLWLTAWITEHTTHWGLYIDDFWWTAVWAGIVLSIVSWVLSVL 122
Query 124 ARDFRR 129
+ + +
Sbjct 123 SGNLIK 128
>gi|254775277|ref|ZP_05216793.1| hypothetical protein MaviaA2_11486 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=120
Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/116 (86%), Positives = 108/116 (94%), Gaps = 0/116 (0%)
Query 10 VTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILSIPLYILT 69
+TGFALW+VTLFV G+ F GGDT LQRV IIFVVAVIFGLVNAFIKPIVQILSIPLYILT
Sbjct 1 MTGFALWIVTLFVHGLTFVGGDTKLQRVGIIFVVAVIFGLVNAFIKPIVQILSIPLYILT 60
Query 70 LGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILSLLAR 125
LGL H+V+NA MLW+TAWITEHTTHWGLQIDHFWWTAIWAAI+LSIVSW+LSL+ R
Sbjct 61 LGLIHIVINALMLWITAWITEHTTHWGLQIDHFWWTAIWAAIVLSIVSWLLSLVIR 116
>gi|126437282|ref|YP_001072973.1| membrane protein [Mycobacterium sp. JLS]
gi|126237082|gb|ABO00483.1| membrane protein of unknown function [Mycobacterium sp. JLS]
Length=129
Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 96/126 (77%), Positives = 110/126 (88%), Gaps = 0/126 (0%)
Query 4 FLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILSI 63
FL+RAAVTG ALW+VT V GM F GG+ TLQRV IIFVVAV+FGLVNA +KPIVQILSI
Sbjct 3 FLLRAAVTGVALWLVTQLVSGMEFVGGENTLQRVGIIFVVAVVFGLVNAIVKPIVQILSI 62
Query 64 PLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILSLL 123
PLY++TLGLFHVVVNA MLWLTAWITEHTTHWGL ID FWWTA+WA I+LSIVSW+LS+L
Sbjct 63 PLYVVTLGLFHVVVNALMLWLTAWITEHTTHWGLYIDDFWWTAVWAGIVLSIVSWVLSVL 122
Query 124 ARDFRR 129
+ + +
Sbjct 123 SGNLIK 128
>gi|118618333|ref|YP_906665.1| hypothetical protein MUL_2924 [Mycobacterium ulcerans Agy99]
gi|118570443|gb|ABL05194.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=133
Score = 194 bits (492), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/133 (79%), Positives = 115/133 (87%), Gaps = 0/133 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
M PFL+RAAVTGFALWVVTL + G+RF GGDTTL+++ II VVAVIFGLVNA IKPIVQ
Sbjct 1 MGPFLLRAAVTGFALWVVTLCISGIRFVGGDTTLEKIGIIVVVAVIFGLVNAIIKPIVQF 60
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
LSIPLYILTLGL HVV+NA MLW+TA ITE TT WGLQIDHFWWTA+WAA LLSIVSW+L
Sbjct 61 LSIPLYILTLGLIHVVINAFMLWITARITEDTTKWGLQIDHFWWTAVWAATLLSIVSWLL 120
Query 121 SLLARDFRRVTRA 133
SLL RD RRV R
Sbjct 121 SLLTRDLRRVARG 133
>gi|333989529|ref|YP_004522143.1| hypothetical protein JDM601_0889 [Mycobacterium sp. JDM601]
gi|333485497|gb|AEF34889.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=133
Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 97/133 (73%), Positives = 114/133 (86%), Gaps = 1/133 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
M FL+RAA+TG ALWVVT VPG+ GGDTT++RV IIFV+A+IFGLVNAFIKP+VQ+
Sbjct 1 MASFLIRAALTGLALWVVTQIVPGIEIVGGDTTVERVGIIFVIALIFGLVNAFIKPVVQL 60
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHT-THWGLQIDHFWWTAIWAAILLSIVSWI 119
LSIPLYILTLGLFH+VVNA MLW+TAWIT+ T HWGL I FWW AIWAAI+LS+VSW+
Sbjct 61 LSIPLYILTLGLFHIVVNALMLWITAWITDKTAKHWGLYIADFWWDAIWAAIVLSLVSWV 120
Query 120 LSLLARDFRRVTR 132
LSL+ RD RR+TR
Sbjct 121 LSLVLRDARRITR 133
>gi|120405834|ref|YP_955663.1| hypothetical protein Mvan_4884 [Mycobacterium vanbaalenii PYR-1]
gi|119958652|gb|ABM15657.1| membrane protein of unknown function [Mycobacterium vanbaalenii
PYR-1]
Length=127
Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/122 (78%), Positives = 110/122 (91%), Gaps = 0/122 (0%)
Query 4 FLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILSI 63
FL+RAA+TG ALWVVTL VPG++F GGD+T RV IIFVVAVIFGLVNA IKP+VQI+SI
Sbjct 4 FLLRAALTGLALWVVTLIVPGVQFVGGDSTAARVGIIFVVAVIFGLVNAVIKPVVQIISI 63
Query 64 PLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILSLL 123
PLYILTLGL H+V+NA MLW+T+WITEHTTHWGL ID FWWTAIWAAI+LSIVSW+LSL+
Sbjct 64 PLYILTLGLIHIVINAFMLWITSWITEHTTHWGLSIDDFWWTAIWAAIVLSIVSWLLSLI 123
Query 124 AR 125
+
Sbjct 124 VK 125
>gi|145222441|ref|YP_001133119.1| membrane protein [Mycobacterium gilvum PYR-GCK]
gi|145214927|gb|ABP44331.1| membrane protein of unknown function [Mycobacterium gilvum PYR-GCK]
Length=195
Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/125 (74%), Positives = 109/125 (88%), Gaps = 0/125 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
M L+RA +TG ALWVVTL VPG+ F GG++T R+ +IFVVAVIFG+VNA IKPIVQI
Sbjct 69 MGSLLLRAGLTGVALWVVTLLVPGIEFVGGESTAARIGVIFVVAVIFGVVNAVIKPIVQI 128
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
+SIPLYILTLGLFHVV+NA MLW+T+WITEHTTHWGL ID FWWTAIWAAI+LS+VSW+L
Sbjct 129 VSIPLYILTLGLFHVVINAFMLWITSWITEHTTHWGLAIDDFWWTAIWAAIVLSVVSWLL 188
Query 121 SLLAR 125
SL+ +
Sbjct 189 SLIVQ 193
>gi|315442888|ref|YP_004075767.1| hypothetical protein Mspyr1_12520 [Mycobacterium sp. Spyr1]
gi|315261191|gb|ADT97932.1| predicted membrane protein [Mycobacterium sp. Spyr1]
Length=127
Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 92/125 (74%), Positives = 109/125 (88%), Gaps = 0/125 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
M L+RA +TG ALWVVTL VPG+ F GG++T R+ +IFVVAVIFG+VNA IKPIVQI
Sbjct 1 MGSLLLRAGLTGVALWVVTLLVPGIEFVGGESTAARIGVIFVVAVIFGVVNAVIKPIVQI 60
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
+SIPLYILTLGLFHVV+NA MLW+T+WITEHTTHWGL ID FWWTAIWAAI+LS+VSW+L
Sbjct 61 VSIPLYILTLGLFHVVINAFMLWITSWITEHTTHWGLAIDDFWWTAIWAAIVLSVVSWLL 120
Query 121 SLLAR 125
SL+ +
Sbjct 121 SLIVQ 125
>gi|343927700|ref|ZP_08767168.1| hypothetical protein GOALK_097_01220 [Gordonia alkanivorans NBRC
16433]
gi|343762341|dbj|GAA14094.1| hypothetical protein GOALK_097_01220 [Gordonia alkanivorans NBRC
16433]
Length=130
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/126 (62%), Positives = 100/126 (80%), Gaps = 0/126 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
M+ FL+R T ALWV TL VPG+ F GG TT ++V I VVAVIFG++NA +KPIVQI
Sbjct 1 MLAFLVRTVCTAVALWVATLIVPGIEFVGGSTTAEKVGIALVVAVIFGVLNALVKPIVQI 60
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
+SIP YILTLGL H+V+NA ML +TAWIT +TTHWGL++D F+W+AI+ AI++S+V W+L
Sbjct 61 ISIPFYILTLGLIHIVINALMLEITAWITRNTTHWGLEVDDFFWSAIFGAIVVSVVGWLL 120
Query 121 SLLARD 126
LL RD
Sbjct 121 GLLMRD 126
>gi|262203548|ref|YP_003274756.1| hypothetical protein Gbro_3678 [Gordonia bronchialis DSM 43247]
gi|262086895|gb|ACY22863.1| membrane protein of unknown function [Gordonia bronchialis DSM
43247]
Length=131
Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 74/129 (58%), Positives = 101/129 (79%), Gaps = 0/129 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
M F+++ A TGFALW+ +L VPG+ F GG +++ I+ VVAVIFG+VNA IKPIVQI
Sbjct 3 MKAFVIQTAFTGFALWIASLIVPGVDFVGGSNNWEKLGIVLVVAVIFGVVNAIIKPIVQI 62
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
L+IP YILTLGL H+V+NA ML +TAWIT +TTHWGL++D F+W+AI AI++S+V W +
Sbjct 63 LAIPFYILTLGLIHIVINAFMLEITAWITRNTTHWGLEVDDFFWSAILGAIVVSLVGWGV 122
Query 121 SLLARDFRR 129
S+L ++ R
Sbjct 123 SMLLKEPVR 131
>gi|326383226|ref|ZP_08204914.1| membrane protein of unknown function [Gordonia neofelifaecis
NRRL B-59395]
gi|326197976|gb|EGD55162.1| membrane protein of unknown function [Gordonia neofelifaecis
NRRL B-59395]
Length=133
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/128 (57%), Positives = 99/128 (78%), Gaps = 2/128 (1%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGM--RFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIV 58
M FL+R+A+TG ALW+ TL VPG+ F G D+ ++ I+F VAV+FGLVN FIKPI+
Sbjct 1 MRAFLIRSALTGVALWIATLLVPGIYFEFGGLDSWWTKLGIVFFVAVVFGLVNGFIKPII 60
Query 59 QILSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSW 118
QILSIPLYILTLGL H+V+NA ML +T+W+T + H GL +D F+W+AI+ AI++SIV W
Sbjct 61 QILSIPLYILTLGLIHIVINALMLEITSWLTNNVFHHGLVVDDFFWSAIFGAIVVSIVGW 120
Query 119 ILSLLARD 126
+ +++ RD
Sbjct 121 LTAMVMRD 128
>gi|332668774|ref|YP_004451781.1| hypothetical protein Celf_0249 [Cellulomonas fimi ATCC 484]
gi|332337811|gb|AEE44394.1| membrane protein of unknown function [Cellulomonas fimi ATCC
484]
Length=127
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/126 (54%), Positives = 95/126 (76%), Gaps = 2/126 (1%)
Query 4 FLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILSI 63
F++R + G A+W TL + G+ G DT +++V II ++A++FG+VNA +KPIV LSI
Sbjct 3 FVVRVLINGVAIWFATLVLSGLTIVGADTNVEQVGIILLIALVFGIVNAIVKPIVSFLSI 62
Query 64 PLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILSLL 123
PLYILTLGLF +VVNA ML LTAWITE T+ WGL+ID+F TA+ +++S+VS++LS+L
Sbjct 63 PLYILTLGLFTLVVNALMLMLTAWITEQTS-WGLRIDNF-GTAVLGGLIISVVSFVLSVL 120
Query 124 ARDFRR 129
D RR
Sbjct 121 LPDGRR 126
>gi|296131223|ref|YP_003638473.1| hypothetical protein Cfla_3396 [Cellulomonas flavigena DSM 20109]
gi|296023038|gb|ADG76274.1| membrane protein of unknown function [Cellulomonas flavigena
DSM 20109]
Length=126
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/108 (57%), Positives = 83/108 (77%), Gaps = 1/108 (0%)
Query 4 FLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILSI 63
F+ R ++G A+W+ T+ +PG+ GG++T +RV +I ++A++FGLVNA +KPIV ++SI
Sbjct 3 FVARVLISGVAIWLATVLLPGLEVVGGESTAERVGVILLIALVFGLVNAIVKPIVAVISI 62
Query 64 PLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAI 111
PLYILTLGLF +VVNA ML LTAWITE TT WGL+ID+F I A I
Sbjct 63 PLYILTLGLFTLVVNALMLMLTAWITEQTT-WGLRIDNFGTAVIGALI 109
>gi|336322184|ref|YP_004602152.1| hypothetical protein Celgi_3093 [Cellvibrio gilvus ATCC 13127]
gi|336105765|gb|AEI13584.1| membrane protein of unknown function [Cellvibrio gilvus ATCC
13127]
Length=129
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/126 (54%), Positives = 92/126 (74%), Gaps = 3/126 (2%)
Query 4 FLMRAAVTGFALWVVTLFVPG-MRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILS 62
F++R + G A+W+ TL + G + G D + II +A++FG+VNA +KP+VQ+LS
Sbjct 3 FVIRVLINGVAIWLATLLLSGGLAVVGADDGGDKALIILGIALVFGIVNAIVKPVVQVLS 62
Query 63 IPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILSL 122
IPLYILTLGLF +VVNA ML LTAWITE THWGL+ID FWW A+ A+++S+VS+ LS+
Sbjct 63 IPLYILTLGLFTLVVNALMLMLTAWITEF-THWGLRIDGFWW-AVGGALIVSLVSFALSV 120
Query 123 LARDFR 128
L + R
Sbjct 121 LVPESR 126
>gi|296131233|ref|YP_003638483.1| hypothetical protein Cfla_3407 [Cellulomonas flavigena DSM 20109]
gi|296023048|gb|ADG76284.1| membrane protein of unknown function [Cellulomonas flavigena
DSM 20109]
Length=126
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/108 (60%), Positives = 78/108 (73%), Gaps = 1/108 (0%)
Query 4 FLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILSI 63
FL R V G A+W+ T+ +PG+ G +T Q V II +VA++FGLVNA +KPIV +LSI
Sbjct 3 FLARVLVNGVAIWLATVILPGLTVVGAQSTAQTVGIILLVALVFGLVNAIVKPIVAVLSI 62
Query 64 PLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAI 111
PLYILTLGLF +VVNA ML LTAWITE T WGL+ID+F I A I
Sbjct 63 PLYILTLGLFTLVVNALMLMLTAWITEQ-TDWGLRIDNFGTAVIGALI 109
>gi|269796859|ref|YP_003316314.1| hypothetical protein Sked_35940 [Sanguibacter keddieii DSM 10542]
gi|269099044|gb|ACZ23480.1| predicted membrane protein [Sanguibacter keddieii DSM 10542]
Length=130
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/121 (52%), Positives = 84/121 (70%), Gaps = 3/121 (2%)
Query 4 FLMRAAVTGFALWVVTLFVPG-MRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILS 62
F +R V A+W+ TL + GGD T RV + VVA+IFG++NA IKPIVQ+ +
Sbjct 3 FFVRVLVNAVAIWLTTLLMGSHFEIVGGDGTGGRVVVFLVVALIFGVINAIIKPIVQLFT 62
Query 63 IPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILSL 122
PLYILTLGLF +VVNA M+ LT W+TE WGL++D FWW A+ AA L+S++S I+S+
Sbjct 63 FPLYILTLGLFTLVVNALMVLLTGWLTEQ-ADWGLRVDGFWW-AVLAAFLISVISTIISV 120
Query 123 L 123
+
Sbjct 121 V 121
>gi|229822447|ref|YP_002883973.1| hypothetical protein Bcav_3970 [Beutenbergia cavernae DSM 12333]
gi|229568360|gb|ACQ82211.1| membrane protein of unknown function [Beutenbergia cavernae DSM
12333]
Length=129
Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/120 (49%), Positives = 84/120 (70%), Gaps = 2/120 (1%)
Query 4 FLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILSI 63
FL+R V+ A+W+ L++ G+ D + +V I+ VV ++F LVNA +KPIV++L+
Sbjct 3 FLVRVIVSSIAVWLTALWINGIELTQADEPINQVVIVLVVGLVFALVNAIVKPIVKVLTF 62
Query 64 PLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILSLL 123
PLYILTLGLF ++VNA +L LT WIT + T WGL +D F W A W +++SI+S ILSL+
Sbjct 63 PLYILTLGLFGLIVNALLLMLTGWITGY-TQWGLTVDGF-WPAFWGGLVISIISGILSLI 120
>gi|256833677|ref|YP_003162404.1| hypothetical protein Jden_2469 [Jonesia denitrificans DSM 20603]
gi|256687208|gb|ACV10101.1| membrane protein of unknown function [Jonesia denitrificans DSM
20603]
Length=132
Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/130 (45%), Positives = 87/130 (67%), Gaps = 11/130 (8%)
Query 4 FLMRAAVTGFALWVVTLFVPGMRFA--------GGDTTLQRVAIIFVVAVIFGLVNAFIK 55
FL R VT A W+ TL + G F G+ + R A+ VVA+IF L+NA IK
Sbjct 3 FLKRVLVTALAFWLTTLLL-GSNFEVVGQFAIVDGNEFVNRGAVFLVVALIFALINAIIK 61
Query 56 PIVQILSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSI 115
PIVQ LS PL ILTLGLF +V+NA+M+ +TAWIT+ ++ WG++++ FWW A+ AA+++++
Sbjct 62 PIVQFLSFPLIILTLGLFSLVINAAMILITAWITD-SSSWGIEVNGFWW-AMLAAVIIAV 119
Query 116 VSWILSLLAR 125
++ + + L R
Sbjct 120 ITSVGTALVR 129
>gi|84495452|ref|ZP_00994571.1| putative membrane protein [Janibacter sp. HTCC2649]
gi|84384945|gb|EAQ00825.1| putative membrane protein [Janibacter sp. HTCC2649]
Length=129
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/126 (43%), Positives = 79/126 (63%), Gaps = 1/126 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
M FL+R + ALW + G+ F D +V I +VA++FGLVNA I+PI ++
Sbjct 1 MQNFLIRVLINAVALWAAAGLLDGISFGTDDAWTSKVVTIVLVALVFGLVNAVIRPIAKV 60
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
LS P +LTLGLF +VNA ML +T WIT+ ID F+W A++ A+++++VSW+L
Sbjct 61 LSFPAIVLTLGLFTFIVNAFMLQITEWITKP-IGLAFTIDDFFWDAVFGAVIITVVSWLL 119
Query 121 SLLARD 126
S++ D
Sbjct 120 SVVLPD 125
>gi|291299719|ref|YP_003510997.1| hypothetical protein Snas_2213 [Stackebrandtia nassauensis DSM
44728]
gi|290568939|gb|ADD41904.1| membrane protein of unknown function [Stackebrandtia nassauensis
DSM 44728]
Length=129
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/119 (51%), Positives = 76/119 (64%), Gaps = 3/119 (2%)
Query 4 FLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILSI 63
FL+R + ALWV +L V G+ T L+ + + +VA+IF LVN FIKPIVQ+L
Sbjct 3 FLLRVLIYAVALWVTSLVVSGIHITA-VTKLRDLGTLLLVALIFSLVNGFIKPIVQMLGC 61
Query 64 PLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILSL 122
LYILTLGLF +V NA + LT W E H +ID F W A W AI++SIVSW+LSL
Sbjct 62 ALYILTLGLFALVANALLFLLTEWFAE-LLHLPFRIDGF-WAAFWGAIVMSIVSWVLSL 118
>gi|238062049|ref|ZP_04606758.1| hypothetical protein MCAG_03015 [Micromonospora sp. ATCC 39149]
gi|237883860|gb|EEP72688.1| hypothetical protein MCAG_03015 [Micromonospora sp. ATCC 39149]
Length=156
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/128 (45%), Positives = 83/128 (65%), Gaps = 9/128 (7%)
Query 2 VPFLMRAAVTGFALWVVTLFVPGMRF---AGGDTTLQRVAIIFVVAVIFGLVNAFIKPIV 58
V FL+R A+T ALW+ TL VPG+ GG+T L VA VA+IFG+VNA +KP++
Sbjct 30 VGFLIRLAITAVALWITTLIVPGVEVDGRTGGNTVLTLVA----VALIFGVVNAVLKPVI 85
Query 59 QILSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSW 118
+++ Y+LTLGLF +VVNA + LT WI H ++D F W A W AI++++ SW
Sbjct 86 KVVGCVFYLLTLGLFALVVNALLFLLTDWIARH-LDLPFRVDGF-WAAFWGAIVMAVASW 143
Query 119 ILSLLARD 126
++S++ D
Sbjct 144 LISVVVPD 151
>gi|331699225|ref|YP_004335464.1| membrane protein [Pseudonocardia dioxanivorans CB1190]
gi|326953914|gb|AEA27611.1| membrane protein of unknown function [Pseudonocardia dioxanivorans
CB1190]
Length=136
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 77/125 (62%), Gaps = 6/125 (4%)
Query 6 MRAAVTGFALWVVTLFVPGMRF----AGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQIL 61
+R V ALWV TL V G+R + TT + + VVAVIFGL+NA +KPI++++
Sbjct 9 IRVIVVAIALWVATLLVGGIRLGTEVSPNSTTASTIGTLLVVAVIFGLINAVLKPIIKVI 68
Query 62 SIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILS 121
PLYILTLGL +VVN +LWL +I E +D F W A W AI++++VS++L
Sbjct 69 GCPLYILTLGLISLVVNGLLLWLAGYIAER-VGLPFAVDGF-WAAFWGAIIVAVVSFLLH 126
Query 122 LLARD 126
+L D
Sbjct 127 VLIPD 131
>gi|302864692|ref|YP_003833329.1| membrane protein [Micromonospora aurantiaca ATCC 27029]
gi|315500986|ref|YP_004079873.1| hypothetical protein ML5_0169 [Micromonospora sp. L5]
gi|302567551|gb|ADL43753.1| membrane protein of unknown function [Micromonospora aurantiaca
ATCC 27029]
gi|315407605|gb|ADU05722.1| membrane protein of unknown function [Micromonospora sp. L5]
Length=127
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/123 (44%), Positives = 80/123 (66%), Gaps = 3/123 (2%)
Query 4 FLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILSI 63
FL+R A+T ALW+ TL VPG+ +G +T V + VVA++FG+VNA +KP++++
Sbjct 3 FLIRLAITAVALWIATLIVPGVEVSGRNTG-SNVLTLIVVALVFGVVNAVLKPLIKVFGC 61
Query 64 PLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILSLL 123
Y+LTLGLF +VVNA + LT WI +D F W A W AI++++VSW++S++
Sbjct 62 VFYLLTLGLFALVVNALLFLLTDWIA-GVLKLPFHVDGF-WAAFWGAIVVAVVSWLISVI 119
Query 124 ARD 126
D
Sbjct 120 VPD 122
>gi|220914555|ref|YP_002489864.1| hypothetical protein Achl_3822 [Arthrobacter chlorophenolicus
A6]
gi|219861433|gb|ACL41775.1| membrane protein of unknown function [Arthrobacter chlorophenolicus
A6]
Length=148
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/143 (40%), Positives = 87/143 (61%), Gaps = 17/143 (11%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFA-----------GGDTTLQRVAIIFV---VAVI 46
M F++R ALWV + +PGM G + + I+ + +I
Sbjct 8 MGSFILRVIFNAAALWVASWVLPGMDITSTAASDAVARTGISQDTETIGIVLAYLFIGLI 67
Query 47 FGLVNAFIKPIVQILSIPLYILTLGLFHVVVNASMLWLTAWITEHT-THWGLQIDHFWWT 105
FG+VNA ++P+V +L++P+ ILTLGLF +V+NA+ML+LTAWI+++T H L ID F+WT
Sbjct 68 FGVVNALVRPLVSLLALPITILTLGLFAIVINAAMLYLTAWISDYTPVH--LTIDSFFWT 125
Query 106 AIWAAILLSIVSWILSLLARDFR 128
AI AAI++S+VS + L+ R
Sbjct 126 AILAAIIISLVSLVAGLVPGSRR 148
>gi|290959046|ref|YP_003490228.1| hypothetical protein SCAB_46271 [Streptomyces scabiei 87.22]
gi|260648572|emb|CBG71683.1| putative membrane protein [Streptomyces scabiei 87.22]
Length=125
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/97 (49%), Positives = 71/97 (74%), Gaps = 2/97 (2%)
Query 30 GDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILSIPLYILTLGLFHVVVNASMLWLTAWIT 89
GD T + +A + +VA++FGLVNA +KP+VQ+L++PL+I+TLGLF +VVNA ML LT+W+
Sbjct 29 GDNTGKEIATLLLVALVFGLVNALVKPLVQVLTLPLFIVTLGLFTLVVNALMLLLTSWLA 88
Query 90 EHTTHWGLQIDHFWWTAIWAAILLSIVSWILSLLARD 126
+ ++ F WTA+ +++SIVSW LSL+ D
Sbjct 89 D-VLDLSFHVEGF-WTAVLGGLIISIVSWALSLVLPD 123
>gi|308178634|ref|YP_003918040.1| hypothetical protein AARI_28730 [Arthrobacter arilaitensis Re117]
gi|307746097|emb|CBT77069.1| conserved hypothetical membrane protein [Arthrobacter arilaitensis
Re117]
Length=128
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/124 (45%), Positives = 77/124 (63%), Gaps = 2/124 (1%)
Query 4 FLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIF-VVAVIFGLVNAFIKPIVQILS 62
FL+R V AL VPG++ + L I + VVA IFGLVNA ++P+V++ S
Sbjct 3 FLIRVIVNALALAAAVWIVPGLKIVATNEGLTSTVIAYLVVAAIFGLVNALVRPVVKLFS 62
Query 63 IPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILSL 122
+P+ LTLGLF +V+NA ML LT+W+T T + L I+ FWW AI I++SIVS +L L
Sbjct 63 LPITCLTLGLFTIVINAVMLLLTSWLTTF-TPFELIIEKFWWDAIAGTIIISIVSAVLGL 121
Query 123 LARD 126
+
Sbjct 122 FVKS 125
>gi|116672572|ref|YP_833505.1| membrane hypothetical protein [Arthrobacter sp. FB24]
gi|116612681|gb|ABK05405.1| membrane protein of unknown function [Arthrobacter sp. FB24]
Length=141
Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/134 (39%), Positives = 84/134 (63%), Gaps = 17/134 (12%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTT--------------LQRVAIIFVVAVI 46
M F++R + G AL + + +PG+ + TT L + + +I
Sbjct 1 MFSFILRVLINGLALGIASWILPGLDISTTATTEAVAQGGVTQGTDPLGVILAYLFIGLI 60
Query 47 FGLVNAFIKPIVQILSIPLYILTLGLFHVVVNASMLWLTAWITEHT-THWGLQIDHFWWT 105
FGLVNA ++PIV +LS+P+ ILTLGLF +V+NA+ML+LT+W++ +T H+ ID F+WT
Sbjct 61 FGLVNALVRPIVSLLSLPITILTLGLFTIVINAAMLFLTSWLSSYTPVHF--TIDSFFWT 118
Query 106 AIWAAILLSIVSWI 119
A+ AAI++++VS +
Sbjct 119 AVLAAIIITVVSLV 132
>gi|317123417|ref|YP_004097529.1| hypothetical protein Intca_0245 [Intrasporangium calvum DSM 43043]
gi|315587505|gb|ADU46802.1| membrane protein of unknown function [Intrasporangium calvum
DSM 43043]
Length=127
Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/121 (37%), Positives = 77/121 (64%), Gaps = 1/121 (0%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
++ F+++ + G ALW+ L V G+ F T V + +VA+IFG++N F++PI +
Sbjct 2 LLNFVIKTVINGIALWIAALLVDGITFGTQADTAAIVRTVLIVALIFGVLNTFVRPIAKA 61
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
+S+P ILTLGLF ++NA ML LT+W+ + + ++HF+W A+ +++++ VS IL
Sbjct 62 VSLPFIILTLGLFVFIINALMLQLTSWLADQ-LNLAFHVEHFFWDAVLGSLIITFVSMIL 120
Query 121 S 121
Sbjct 121 G 121
>gi|325003285|ref|ZP_08124397.1| hypothetical protein PseP1_31162 [Pseudonocardia sp. P1]
Length=133
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/123 (44%), Positives = 74/123 (61%), Gaps = 3/123 (2%)
Query 4 FLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILSI 63
F++R V +LWV T+ V G+ + G T R + VA++FG+VNA +KP+V L
Sbjct 9 FVVRTLVVAASLWVATVLVSGIDLSAGSTG-ARAGTLLAVALVFGVVNAIVKPVVATLGC 67
Query 64 PLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILSLL 123
PLYILTLGLF +VVNA M LT W+ +D F W+A W AI++ IVS+ L L+
Sbjct 68 PLYILTLGLFALVVNALMFMLTGWL-AGLVDLPFVVDGF-WSAFWGAIIVGIVSFFLHLV 125
Query 124 ARD 126
D
Sbjct 126 IPD 128
>gi|300780052|ref|ZP_07089908.1| integral membrane protein [Corynebacterium genitalium ATCC 33030]
gi|300534162|gb|EFK55221.1| integral membrane protein [Corynebacterium genitalium ATCC 33030]
Length=127
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/122 (44%), Positives = 78/122 (64%), Gaps = 8/122 (6%)
Query 4 FLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILSI 63
F++ VT ALW+VT+ VPG+ GG VA++F+ VNAFI P+V ++S
Sbjct 3 FIVDLVVTALALWLVTVIVPGVEIFGGIGAFIWVALVFM------FVNAFISPLVNLISF 56
Query 64 PLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILSLL 123
PL +LTLGLF ++VN + LT WI++ + GLQID F W+A + AI+++I SWI+ +
Sbjct 57 PLKVLTLGLFSLIVNTLLFSLTGWISDSIGN-GLQIDGF-WSAFFGAIVMAIASWIVGGI 114
Query 124 AR 125
R
Sbjct 115 FR 116
>gi|319950857|ref|ZP_08024740.1| membrane protein [Dietzia cinnamea P4]
gi|319435470|gb|EFV90707.1| membrane protein [Dietzia cinnamea P4]
Length=143
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/141 (42%), Positives = 84/141 (60%), Gaps = 18/141 (12%)
Query 4 FLMRAAVTGFALWVVTLFVPGMR-------FAGG------DTTLQRVAIIFVVAVIFGLV 50
++R V ALWV TL VPG+ +A G + + + + +VAV+F LV
Sbjct 3 LVLRLIVNAVALWVATLIVPGIALHDTTDIYAPGAGAVENEVNVPTITALLIVAVVFTLV 62
Query 51 NAFIKPIVQILSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQ-IDHFWWTAIWA 109
NA +KPIVQ+LS+PL I+TLGLF +VVNA ML LT WIT +G + + +W A +
Sbjct 63 NAVVKPIVQLLSLPLTIITLGLFLLVVNALMLMLTGWITTTFQPFGAEYVVSGFWAAFFG 122
Query 110 AILLSIVSWILSLL----ARD 126
AI++ +V+W+ +L ARD
Sbjct 123 AIVVGLVNWVFGMLLPTRARD 143
>gi|336115950|ref|YP_004570716.1| hypothetical protein MLP_02990 [Microlunatus phosphovorus NM-1]
gi|334683728|dbj|BAK33313.1| hypothetical protein MLP_02990 [Microlunatus phosphovorus NM-1]
Length=128
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/124 (48%), Positives = 80/124 (65%), Gaps = 4/124 (3%)
Query 4 FLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILSI 63
F++R ALWV T G+ G DTT Q+V + +VAVIFG NA +KPI QI++I
Sbjct 3 FILRTLANAAALWVATWIFSGISLTGTDTT-QKVLTMLLVAVIFGAFNAVLKPIFQIVTI 61
Query 64 PLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILS-L 122
P+ ++TLGLF +V+NA ML LT+WI G +D F WTA+ AI++SIVS+I + L
Sbjct 62 PVVLITLGLFLIVINAWMLMLTSWIAS-VVGLGWHVDGF-WTAVGGAIVVSIVSFIANGL 119
Query 123 LARD 126
L D
Sbjct 120 LGTD 123
>gi|1017817|gb|AAC43613.1| membrane spanning protein [Streptomyces coelicolor]
Length=148
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/126 (43%), Positives = 76/126 (61%), Gaps = 3/126 (2%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
M FL++ AL V + + GG T ++ + VVA++FGLVN +KPIVQ+
Sbjct 24 MKNFLVKTIANAGALAVAVWLLDKITLTGGSTG-EKTLTLIVVALVFGLVNMVVKPIVQV 82
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
L+ PL+ILTLGLF +VVNA ML LT+W+ + +D F WTA+ +++SIVSW L
Sbjct 83 LTFPLFILTLGLFTLVVNALMLLLTSWVADK-LDLSFHVDGF-WTAVLGGLIVSIVSWAL 140
Query 121 SLLARD 126
+ D
Sbjct 141 NAFLPD 146
>gi|119962418|ref|YP_949572.1| hypothetical protein AAur_3895 [Arthrobacter aurescens TC1]
gi|119949277|gb|ABM08188.1| putative membrane protein of unknown function [Arthrobacter aurescens
TC1]
Length=142
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/145 (43%), Positives = 92/145 (64%), Gaps = 19/145 (13%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFA---------------GGDTTLQRVAIIFVVAV 45
M F++R + G ALWV T + GM + G DT +A +F+ +
Sbjct 1 MGSFIIRVLINGLALWVATWLLHGMDISTSATQSAAANAGLTQGADTAGIILAYLFI-GL 59
Query 46 IFGLVNAFIKPIVQILSIPLYILTLGLFHVVVNASMLWLTAWITEHT-THWGLQIDHFWW 104
IFG+VNAF++P+V++LS+P+ ILTLGLF +V+NA+ML+LTAW++ T H L ID F+W
Sbjct 60 IFGVVNAFVRPLVRLLSLPVTILTLGLFTIVINAAMLYLTAWLSTFTPVH--LTIDSFFW 117
Query 105 TAIWAAILLSIVSWILSLLARDFRR 129
TAI A+I++SI+S + L+ +R
Sbjct 118 TAILASIIISIISMVAGLIPGAKKR 142
>gi|21222328|ref|NP_628107.1| hypothetical protein SCO3922 [Streptomyces coelicolor A3(2)]
gi|289770462|ref|ZP_06529840.1| membrane spanning protein [Streptomyces lividans TK24]
gi|14548362|sp|Q53868.2|Y3922_STRCO RecName: Full=Uncharacterized protein SCO3922
gi|5457272|emb|CAB46960.1| putative membrane protein [Streptomyces coelicolor A3(2)]
gi|289700661|gb|EFD68090.1| membrane spanning protein [Streptomyces lividans TK24]
Length=125
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/126 (43%), Positives = 76/126 (61%), Gaps = 3/126 (2%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
M FL++ AL V + + GG T ++ + VVA++FGLVN +KPIVQ+
Sbjct 1 MKNFLVKTIANAGALAVAVWLLDKITLTGGSTG-EKTLTLIVVALVFGLVNMVVKPIVQV 59
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
L+ PL+ILTLGLF +VVNA ML LT+W+ + +D F WTA+ +++SIVSW L
Sbjct 60 LTFPLFILTLGLFTLVVNALMLLLTSWVADK-LDLSFHVDGF-WTAVLGGLIVSIVSWAL 117
Query 121 SLLARD 126
+ D
Sbjct 118 NAFLPD 123
>gi|312141057|ref|YP_004008393.1| integral membrane protein [Rhodococcus equi 103S]
gi|325674132|ref|ZP_08153822.1| membrane spanning protein [Rhodococcus equi ATCC 33707]
gi|311890396|emb|CBH49714.1| putative integral membrane protein [Rhodococcus equi 103S]
gi|325555397|gb|EGD25069.1| membrane spanning protein [Rhodococcus equi ATCC 33707]
Length=126
Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/126 (47%), Positives = 90/126 (72%), Gaps = 3/126 (2%)
Query 4 FLMRAAVTGFALWVVTLFVPGMRFA-GGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILS 62
FL+R + A+W+ + +V G+ A G+ T + I+ +A++F +VNAF+KPIVQ+LS
Sbjct 3 FLIRLVINAVAIWLASQWVSGITVADSGEGTGTDILIVLGIALVFTVVNAFVKPIVQLLS 62
Query 63 IPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILSL 122
+PL ILTLGLF +V+NA ML LT+WI+ T WGL +D F WTA+W A+++S+V+++LS
Sbjct 63 LPLLILTLGLFTLVINALMLLLTSWISSQ-TEWGLSVDGF-WTAVWGALIISVVNFVLSA 120
Query 123 LARDFR 128
L D +
Sbjct 121 LVPDKK 126
>gi|163839386|ref|YP_001623791.1| hypothetical protein RSal33209_0630 [Renibacterium salmoninarum
ATCC 33209]
gi|162952862|gb|ABY22377.1| hypothetical membrane protein [Renibacterium salmoninarum ATCC
33209]
Length=110
Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/111 (45%), Positives = 73/111 (66%), Gaps = 3/111 (2%)
Query 25 MRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILSIPLYILTLGLFHVVVNASMLWL 84
M A G+ T V + +IFG+VNA IKP+V+++S + LTLGLF V++NA+MLWL
Sbjct 1 MNVAQGNNTFASVLAFLFIGLIFGIVNALIKPLVKLVSWTVTFLTLGLFTVIINAAMLWL 60
Query 85 TAWITE-HTTHWGLQIDHFWWTAIWAAILLSIVSWILSLLARDFRRVTRAH 134
T+W++ H+ ID F+WTAIWAA+++S++S I S + RR + A
Sbjct 61 TSWLSSFRPVHF--TIDSFFWTAIWAALIISVLSMIGSGVTGINRRSSSAD 109
>gi|297200893|ref|ZP_06918290.1| membrane spanning protein [Streptomyces sviceus ATCC 29083]
gi|197716391|gb|EDY60425.1| membrane spanning protein [Streptomyces sviceus ATCC 29083]
Length=125
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/126 (42%), Positives = 78/126 (62%), Gaps = 3/126 (2%)
Query 1 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQI 60
M FL++ AL V + + GG T ++V + VVA++FGLVN +KPIVQ+
Sbjct 1 MKNFLVKTIANAGALAVAVWLLDKITLTGGSTG-KKVLTLIVVALVFGLVNFLVKPIVQV 59
Query 61 LSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWIL 120
L+ PL+ILTLGLF ++VNA ML LT+W+ + ++ F WTA+ +++SIVSW L
Sbjct 60 LTFPLFILTLGLFTLIVNALMLLLTSWLADK-LDLSFHVEGF-WTAVLGGLIISIVSWAL 117
Query 121 SLLARD 126
++ D
Sbjct 118 HMVLPD 123
Lambda K H
0.335 0.143 0.486
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129924441710
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40