BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1904
Length=143
Score E
Sequences producing significant alignments: (Bits) Value
gi|15841375|ref|NP_336412.1| anti-anti-sigma factor [Mycobacteri... 287 4e-76
gi|15609041|ref|NP_216420.1| hypothetical protein Rv1904 [Mycoba... 286 5e-76
gi|31793097|ref|NP_855590.1| hypothetical protein Mb1939 [Mycoba... 285 2e-75
gi|289758010|ref|ZP_06517388.1| anti-anti-sigma factor [Mycobact... 285 2e-75
gi|240172581|ref|ZP_04751240.1| anti-anti-sigma factor [Mycobact... 233 5e-60
gi|323719568|gb|EGB28692.1| hypothetical protein TMMG_01164 [Myc... 211 3e-53
gi|339294839|gb|AEJ46950.1| hypothetical protein CCDC5079_1760 [... 201 2e-50
gi|118618334|ref|YP_906666.1| hypothetical protein MUL_2925 [Myc... 199 2e-49
gi|183982806|ref|YP_001851097.1| hypothetical protein MMAR_2800 ... 196 7e-49
gi|254819005|ref|ZP_05224006.1| hypothetical protein MintA_03716... 139 1e-31
gi|326904251|gb|EGE51184.1| hypothetical protein TBPG_02149 [Myc... 139 1e-31
gi|15609775|ref|NP_217154.1| hypothetical protein Rv2638 [Mycoba... 139 2e-31
gi|41408840|ref|NP_961676.1| hypothetical protein MAP2742 [Mycob... 138 3e-31
gi|118462259|ref|YP_882700.1| anti-anti-sigma factor [Mycobacter... 137 4e-31
gi|296170941|ref|ZP_06852471.1| SpoIIAA family protein [Mycobact... 132 2e-29
gi|240172519|ref|ZP_04751178.1| hypothetical protein MkanA1_2460... 132 2e-29
gi|342858531|ref|ZP_08715186.1| hypothetical protein MCOL_06636 ... 129 2e-28
gi|118618620|ref|YP_906952.1| hypothetical protein MUL_3282 [Myc... 120 6e-26
gi|183982075|ref|YP_001850366.1| hypothetical protein MMAR_2061 ... 120 7e-26
gi|254551692|ref|ZP_05142139.1| hypothetical protein Mtube_14749... 120 8e-26
gi|333991578|ref|YP_004524192.1| hypothetical protein JDM601_293... 118 3e-25
gi|15608505|ref|NP_215881.1| anti-anti-sigma factor RSFA (anti-s... 115 2e-24
gi|289753447|ref|ZP_06512825.1| anti-anti-sigma factor rsfA [Myc... 114 7e-24
gi|31792561|ref|NP_855054.1| hypothetical protein Mb1400c [Mycob... 113 8e-24
gi|289569379|ref|ZP_06449606.1| anti-anti-sigma factor rsfA [Myc... 112 1e-23
gi|289751265|ref|ZP_06510643.1| conserved hypothetical protein [... 79.3 1e-13
gi|257055169|ref|YP_003133001.1| anti-anti-sigma factor [Sacchar... 58.5 3e-07
gi|258652299|ref|YP_003201455.1| PAS/PAC sensor protein [Nakamur... 57.4 6e-07
gi|257056617|ref|YP_003134449.1| anti-anti-sigma factor [Sacchar... 57.4 7e-07
gi|291450033|ref|ZP_06589423.1| predicted protein [Streptomyces ... 55.1 3e-06
gi|226305069|ref|YP_002765027.1| anti-anti-sigma factor [Rhodoco... 52.0 3e-05
gi|256377999|ref|YP_003101659.1| anti-sigma-factor antagonist [A... 52.0 3e-05
gi|109150045|ref|YP_654188.1| anti-anti-sigma regulatory factor ... 50.8 6e-05
gi|291438155|ref|ZP_06577545.1| anti-sigma-B factor antagonist [... 50.4 9e-05
gi|297201347|ref|ZP_06918744.1| anti-sigma F factor antagonist [... 50.4 9e-05
gi|120402490|ref|YP_952319.1| anti-sigma-factor antagonist [Myco... 50.1 1e-04
gi|120403518|ref|YP_953347.1| anti-sigma-factor antagonist [Myco... 49.7 1e-04
gi|134099266|ref|YP_001104927.1| hypothetical protein SACE_2721 ... 49.7 1e-04
gi|254388760|ref|ZP_05003993.1| anti-sigma factor antagonist [St... 49.7 2e-04
gi|145220808|ref|YP_001131486.1| anti-sigma-factor antagonist [M... 49.7 2e-04
gi|342859087|ref|ZP_08715741.1| anti sigma factor antagonist [My... 49.3 2e-04
gi|295837419|ref|ZP_06824352.1| anti-sigma-B factor antagonist [... 49.3 2e-04
gi|145225514|ref|YP_001136192.1| anti-sigma-factor antagonist [M... 48.9 2e-04
gi|126433913|ref|YP_001069604.1| anti-sigma-factor antagonist [M... 48.9 3e-04
gi|317123693|ref|YP_004097805.1| anti-sigma-factor antagonist [I... 48.9 3e-04
gi|21221968|ref|NP_627747.1| anti-sigma factor antagonist [Strep... 48.9 3e-04
gi|29831157|ref|NP_825791.1| anti-sigma factor antagonist [Strep... 48.5 3e-04
gi|254525836|ref|ZP_05137888.1| anti-anti-sigma regulatory facto... 48.1 4e-04
gi|108798253|ref|YP_638450.1| anti-sigma-factor antagonist [Myco... 47.8 5e-04
gi|256376432|ref|YP_003100092.1| anti-sigma-factor antagonist [A... 47.8 5e-04
>gi|15841375|ref|NP_336412.1| anti-anti-sigma factor [Mycobacterium tuberculosis CDC1551]
gi|254232080|ref|ZP_04925407.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|308231977|ref|ZP_07414465.2| hypothetical protein TMAG_02084 [Mycobacterium tuberculosis SUMu001]
25 more sequence titles
Length=144
Score = 287 bits (734), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 143/143 (100%), Positives = 143/143 (100%), Gaps = 0/143 (0%)
Query 1 MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS 60
MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS
Sbjct 2 MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS 61
Query 61 KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC 120
KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC
Sbjct 62 KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC 121
Query 121 GLRRLIPLYATVETALAPPPSAH 143
GLRRLIPLYATVETALAPPPSAH
Sbjct 122 GLRRLIPLYATVETALAPPPSAH 144
>gi|15609041|ref|NP_216420.1| hypothetical protein Rv1904 [Mycobacterium tuberculosis H37Rv]
gi|148661712|ref|YP_001283235.1| hypothetical protein MRA_1915 [Mycobacterium tuberculosis H37Ra]
gi|148823116|ref|YP_001287870.1| hypothetical protein TBFG_11933 [Mycobacterium tuberculosis F11]
38 more sequence titles
Length=143
Score = 286 bits (733), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 143/143 (100%), Positives = 143/143 (100%), Gaps = 0/143 (0%)
Query 1 MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS 60
MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS
Sbjct 1 MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS 60
Query 61 KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC 120
KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC
Sbjct 61 KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC 120
Query 121 GLRRLIPLYATVETALAPPPSAH 143
GLRRLIPLYATVETALAPPPSAH
Sbjct 121 GLRRLIPLYATVETALAPPPSAH 143
>gi|31793097|ref|NP_855590.1| hypothetical protein Mb1939 [Mycobacterium bovis AF2122/97]
gi|121637810|ref|YP_978033.1| hypothetical protein BCG_1943 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224990294|ref|YP_002644981.1| hypothetical protein JTY_1927 [Mycobacterium bovis BCG str. Tokyo
172]
gi|31618688|emb|CAD94641.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121493457|emb|CAL71930.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224773407|dbj|BAH26213.1| hypothetical protein JTY_1927 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341601837|emb|CCC64511.1| conserved hypothetical protein [Mycobacterium bovis BCG str.
Moreau RDJ]
Length=143
Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 142/143 (99%), Positives = 142/143 (99%), Gaps = 0/143 (0%)
Query 1 MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS 60
MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS
Sbjct 1 MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS 60
Query 61 KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC 120
KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC
Sbjct 61 KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC 120
Query 121 GLRRLIPLYATVETALAPPPSAH 143
GLRRLIPLYA VETALAPPPSAH
Sbjct 121 GLRRLIPLYAMVETALAPPPSAH 143
>gi|289758010|ref|ZP_06517388.1| anti-anti-sigma factor [Mycobacterium tuberculosis T85]
gi|294996815|ref|ZP_06802506.1| hypothetical protein Mtub2_20513 [Mycobacterium tuberculosis
210]
gi|289713574|gb|EFD77586.1| anti-anti-sigma factor [Mycobacterium tuberculosis T85]
gi|326903508|gb|EGE50441.1| hypothetical protein TBPG_01384 [Mycobacterium tuberculosis W-148]
Length=143
Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 142/143 (99%), Positives = 142/143 (99%), Gaps = 0/143 (0%)
Query 1 MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS 60
MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS
Sbjct 1 MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS 60
Query 61 KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC 120
KSAAIAIAPGPFVIDIRDLDFMGSCAYAV AQESVRCRRRGVNMRLVSNQPIVARTIAAC
Sbjct 61 KSAAIAIAPGPFVIDIRDLDFMGSCAYAVWAQESVRCRRRGVNMRLVSNQPIVARTIAAC 120
Query 121 GLRRLIPLYATVETALAPPPSAH 143
GLRRLIPLYATVETALAPPPSAH
Sbjct 121 GLRRLIPLYATVETALAPPPSAH 143
>gi|240172581|ref|ZP_04751240.1| anti-anti-sigma factor [Mycobacterium kansasii ATCC 12478]
Length=140
Score = 233 bits (595), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 113/139 (82%), Positives = 126/139 (91%), Gaps = 0/139 (0%)
Query 1 MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS 60
M TVA+G +GP+STR S Q D SGLRAVTE TGSAVVVHVGGDIDASNE WQRLV+
Sbjct 1 MDTVALGASSGPASTRLSLQLGDAQSGLRAVTESTGSAVVVHVGGDIDASNEAVWQRLVT 60
Query 61 KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC 120
+SAAIA+APGPFVID+RDL+FMGSCAYAVLAQESVRCRRRGVN+RLVSNQPIVARTIAAC
Sbjct 61 RSAAIAVAPGPFVIDVRDLEFMGSCAYAVLAQESVRCRRRGVNLRLVSNQPIVARTIAAC 120
Query 121 GLRRLIPLYATVETALAPP 139
GLRRL+P+Y++VE ALAPP
Sbjct 121 GLRRLLPMYSSVENALAPP 139
>gi|323719568|gb|EGB28692.1| hypothetical protein TMMG_01164 [Mycobacterium tuberculosis CDC1551A]
Length=105
Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/105 (99%), Positives = 105/105 (100%), Gaps = 0/105 (0%)
Query 39 VVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCR 98
+VVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCR
Sbjct 1 MVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCR 60
Query 99 RRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPPSAH 143
RRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPPSAH
Sbjct 61 RRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPPSAH 105
>gi|339294839|gb|AEJ46950.1| hypothetical protein CCDC5079_1760 [Mycobacterium tuberculosis
CCDC5079]
gi|339298464|gb|AEJ50574.1| hypothetical protein CCDC5180_1737 [Mycobacterium tuberculosis
CCDC5180]
Length=101
Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/101 (99%), Positives = 100/101 (99%), Gaps = 0/101 (0%)
Query 43 VGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGV 102
+GGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAV AQESVRCRRRGV
Sbjct 1 MGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVWAQESVRCRRRGV 60
Query 103 NMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPPSAH 143
NMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPPSAH
Sbjct 61 NMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPPSAH 101
>gi|118618334|ref|YP_906666.1| hypothetical protein MUL_2925 [Mycobacterium ulcerans Agy99]
gi|118570444|gb|ABL05195.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=143
Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/143 (81%), Positives = 128/143 (90%), Gaps = 0/143 (0%)
Query 1 MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS 60
M TVA+G SSTR SS D H+GLRAVTECTGSAVVVHVGGD+DASNEV WQRLV+
Sbjct 1 MNTVAMGSSPSSSSTRLSSPAGDPHTGLRAVTECTGSAVVVHVGGDVDASNEVVWQRLVN 60
Query 61 KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC 120
+SAAIAIAPGPFVIDIRDLDF+GSCAYAVLAQESVRCRRRGVN+RLVSNQPIVARTIAAC
Sbjct 61 RSAAIAIAPGPFVIDIRDLDFIGSCAYAVLAQESVRCRRRGVNLRLVSNQPIVARTIAAC 120
Query 121 GLRRLIPLYATVETALAPPPSAH 143
GLRRL+P+Y++VE AL+P P+ H
Sbjct 121 GLRRLLPMYSSVEAALSPVPNGH 143
>gi|183982806|ref|YP_001851097.1| hypothetical protein MMAR_2800 [Mycobacterium marinum M]
gi|183176132|gb|ACC41242.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=146
Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 114/143 (80%), Positives = 128/143 (90%), Gaps = 0/143 (0%)
Query 1 MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS 60
+ TVA+G SSTR SS D H+GLRAVTECTGSAVVVHVGGD+DASNEV WQRLV+
Sbjct 4 VNTVAMGSSPSSSSTRLSSPAGDPHTGLRAVTECTGSAVVVHVGGDVDASNEVVWQRLVN 63
Query 61 KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC 120
+SAAIAIAPGPFVIDIRDLDF+GSCAYAVLAQESVRCRRRGVN+RLVSNQPIVARTIAAC
Sbjct 64 RSAAIAIAPGPFVIDIRDLDFIGSCAYAVLAQESVRCRRRGVNLRLVSNQPIVARTIAAC 123
Query 121 GLRRLIPLYATVETALAPPPSAH 143
GLRRL+P+Y++VE AL+P P+ H
Sbjct 124 GLRRLLPMYSSVEAALSPVPNGH 146
>gi|254819005|ref|ZP_05224006.1| hypothetical protein MintA_03716 [Mycobacterium intracellulare
ATCC 13950]
Length=145
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/124 (53%), Positives = 93/124 (75%), Gaps = 0/124 (0%)
Query 14 STRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFV 73
ST+ + D HS LRA + G AV+++ GG+IDA NE W+ LVS++A + APGPFV
Sbjct 17 STKLVYELGDPHSTLRATADRCGPAVLIYAGGEIDACNEHTWRHLVSEAAGVVTAPGPFV 76
Query 74 IDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVE 133
+D+ L+FMG CA+AVLA E+ RC++RG+++RLVS +PIVAR I ACGL ++P+Y TV+
Sbjct 77 VDVTGLEFMGCCAFAVLADEAKRCQKRGIDLRLVSCEPIVARIIDACGLGGVLPIYPTVD 136
Query 134 TALA 137
+AL+
Sbjct 137 SALS 140
>gi|326904251|gb|EGE51184.1| hypothetical protein TBPG_02149 [Mycobacterium tuberculosis W-148]
Length=148
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/126 (53%), Positives = 92/126 (74%), Gaps = 0/126 (0%)
Query 12 PSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGP 71
P S R + D HS LRA T+ +G+A+++H GG+ID NE W++LV+++AA APGP
Sbjct 14 PLSLRLVHELGDPHSTLRATTDGSGAALLIHAGGEIDGRNEHLWRQLVTEAAAGVTAPGP 73
Query 72 FVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYAT 131
++D+ LDFMG CA+A LA E+ RCR RG+++RLVS+QPIVAR A GL R++P+Y T
Sbjct 74 LIVDVTGLDFMGCCAFAALADEAQRCRCRGIDLRLVSHQPIVARIAEAGGLSRVLPIYPT 133
Query 132 VETALA 137
V+TAL
Sbjct 134 VDTALG 139
>gi|15609775|ref|NP_217154.1| hypothetical protein Rv2638 [Mycobacterium tuberculosis H37Rv]
gi|15842179|ref|NP_337216.1| SpoIIAA family protein [Mycobacterium tuberculosis CDC1551]
gi|31793824|ref|NP_856317.1| hypothetical protein Mb2671 [Mycobacterium bovis AF2122/97]
74 more sequence titles
Length=148
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/126 (53%), Positives = 92/126 (74%), Gaps = 0/126 (0%)
Query 12 PSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGP 71
P S R + D HS LRA T+ +G+A+++H GG+ID NE W++LV+++AA APGP
Sbjct 14 PLSPRLVHELGDPHSTLRATTDGSGAALLIHAGGEIDGRNEHLWRQLVTEAAAGVTAPGP 73
Query 72 FVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYAT 131
++D+ LDFMG CA+A LA E+ RCR RG+++RLVS+QPIVAR A GL R++P+Y T
Sbjct 74 LIVDVTGLDFMGCCAFAALADEAQRCRCRGIDLRLVSHQPIVARIAEAGGLSRVLPIYPT 133
Query 132 VETALA 137
V+TAL
Sbjct 134 VDTALG 139
>gi|41408840|ref|NP_961676.1| hypothetical protein MAP2742 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|254775968|ref|ZP_05217484.1| hypothetical protein MaviaA2_15040 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41397199|gb|AAS05059.1| hypothetical protein MAP_2742 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336458883|gb|EGO37840.1| anti-anti-sigma factor [Mycobacterium avium subsp. paratuberculosis
S397]
Length=145
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/124 (52%), Positives = 92/124 (75%), Gaps = 0/124 (0%)
Query 14 STRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFV 73
ST+ + D +S LRA T +GSAV+++ GG+IDA NE W+ LVS++A + PGPFV
Sbjct 17 STKLVYELGDPNSTLRATTARSGSAVLIYAGGEIDACNEDTWRHLVSEAAGVVTTPGPFV 76
Query 74 IDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVE 133
+D+ L+FMG CA+AVL E+ RCR+RG+++RLVS +PIV R I ACGL ++P+Y TV+
Sbjct 77 VDVTGLEFMGCCAFAVLTDEAKRCRQRGIDLRLVSCEPIVGRIIDACGLSDILPIYPTVD 136
Query 134 TALA 137
+AL+
Sbjct 137 SALS 140
>gi|118462259|ref|YP_882700.1| anti-anti-sigma factor [Mycobacterium avium 104]
gi|118163546|gb|ABK64443.1| anti-anti-sigma factor [Mycobacterium avium 104]
Length=140
Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/124 (52%), Positives = 92/124 (75%), Gaps = 0/124 (0%)
Query 14 STRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFV 73
ST+ + D +S LRA T +GSAV+++ GG+IDA NE W+ LVS++A + PGPFV
Sbjct 12 STKLVYELGDPNSTLRATTARSGSAVLIYAGGEIDACNEDTWRHLVSEAAGVVATPGPFV 71
Query 74 IDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVE 133
+D+ L+FMG CA+AVL E+ RCR+RG+++RLVS +PIV R I ACGL ++P+Y TV+
Sbjct 72 VDVTGLEFMGCCAFAVLTDEAKRCRQRGIDLRLVSCEPIVGRIIDACGLSDILPIYPTVD 131
Query 134 TALA 137
+AL+
Sbjct 132 SALS 135
>gi|296170941|ref|ZP_06852471.1| SpoIIAA family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894437|gb|EFG74182.1| SpoIIAA family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=137
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 89/124 (72%), Gaps = 0/124 (0%)
Query 14 STRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFV 73
ST+ + D S LRA + +G AV+++ GG++DA NE W++L+ + A +AIAPGP V
Sbjct 9 STKLVYELGDPTSTLRATADRSGPAVLIYAGGEVDACNEHTWRQLLGEVAGVAIAPGPLV 68
Query 74 IDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVE 133
ID+ L+FM CA+AVLA E+ RC+ RG+ +RLVS +PIVAR + ACGL L+P+Y T +
Sbjct 69 IDVTGLEFMACCAFAVLADEAKRCKERGIELRLVSREPIVARIVDACGLSGLLPIYPTAD 128
Query 134 TALA 137
+ALA
Sbjct 129 SALA 132
>gi|240172519|ref|ZP_04751178.1| hypothetical protein MkanA1_24605 [Mycobacterium kansasii ATCC
12478]
Length=142
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/125 (52%), Positives = 87/125 (70%), Gaps = 0/125 (0%)
Query 14 STRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFV 73
STR S+ D S LRA T+ G+AV++H GG++DA NE W++L++++A G FV
Sbjct 16 STRLVSELGDPRSTLRATTDRNGAAVLIHAGGEVDACNEHTWRQLITETATSVPGSGLFV 75
Query 74 IDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVE 133
+D+ LDFMG CAY VLA+E+ RCRRRG +RLV+ Q VAR +AACG L+P+Y TV
Sbjct 76 VDVTGLDFMGCCAYTVLAEEADRCRRRGAELRLVTPQSTVARIVAACGFSDLLPVYPTVA 135
Query 134 TALAP 138
+AL P
Sbjct 136 SALRP 140
>gi|342858531|ref|ZP_08715186.1| hypothetical protein MCOL_06636 [Mycobacterium colombiense CECT
3035]
gi|342134235|gb|EGT87415.1| hypothetical protein MCOL_06636 [Mycobacterium colombiense CECT
3035]
Length=145
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/124 (50%), Positives = 89/124 (72%), Gaps = 0/124 (0%)
Query 14 STRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFV 73
ST+ + D +S LRA + +G++VV++ GG++DA NE W LV ++A+ APG FV
Sbjct 17 STKLVYELGDPNSTLRATADRSGASVVIYAGGEVDAYNEDTWGHLVREAASGVTAPGFFV 76
Query 74 IDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVE 133
+D+ LDFMG CA+AVLA+E+ CR R +++RLVS PIV R + ACGL RL+P+Y TV+
Sbjct 77 VDVTGLDFMGCCAFAVLAEEAKGCRERDIDLRLVSRDPIVERIVDACGLGRLLPIYPTVD 136
Query 134 TALA 137
+AL+
Sbjct 137 SALS 140
>gi|118618620|ref|YP_906952.1| hypothetical protein MUL_3282 [Mycobacterium ulcerans Agy99]
gi|118570730|gb|ABL05481.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=146
Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/127 (48%), Positives = 88/127 (70%), Gaps = 1/127 (0%)
Query 14 STRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFV 73
S R + D HS LRA T+ +AV++H GG++DA+NE W++L++++AA A +PG FV
Sbjct 16 SIRLLRELGDPHSTLRAATDFRSTAVLIHAGGEVDAANEHTWRQLIAETAASAPSPGLFV 75
Query 74 IDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVS-NQPIVARTIAACGLRRLIPLYATV 132
+D+ LDFMG CA+ VLA+++ RCR RGV +R+ S V R +AACGL +P+Y +V
Sbjct 76 VDVSGLDFMGCCAFEVLAEQAGRCRARGVELRIASAAHTRVTRIVAACGLSDALPVYRSV 135
Query 133 ETALAPP 139
+ ALA P
Sbjct 136 DAALALP 142
>gi|183982075|ref|YP_001850366.1| hypothetical protein MMAR_2061 [Mycobacterium marinum M]
gi|183175401|gb|ACC40511.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=146
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/127 (47%), Positives = 88/127 (70%), Gaps = 1/127 (0%)
Query 14 STRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFV 73
S R + D HS LRA T+ +AV++H GG++DA+NE W++L++++AA A +PG F+
Sbjct 16 SIRLVRELGDPHSTLRATTDFRSAAVLIHAGGEVDAANEHTWRQLIAETAASAPSPGLFI 75
Query 74 IDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVS-NQPIVARTIAACGLRRLIPLYATV 132
+D+ LDFMG CA+ VLA+++ RCR RGV +R+ S V R +AACGL +P+Y +V
Sbjct 76 VDVSGLDFMGCCAFEVLAEQAGRCRARGVELRIASAAHTRVTRIVAACGLSDALPVYRSV 135
Query 133 ETALAPP 139
+ ALA P
Sbjct 136 DAALALP 142
>gi|254551692|ref|ZP_05142139.1| hypothetical protein Mtube_14749 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|339295512|gb|AEJ47623.1| hypothetical protein CCDC5079_2433 [Mycobacterium tuberculosis
CCDC5079]
gi|339299130|gb|AEJ51240.1| hypothetical protein CCDC5180_2403 [Mycobacterium tuberculosis
CCDC5180]
Length=108
Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/99 (55%), Positives = 76/99 (77%), Gaps = 0/99 (0%)
Query 39 VVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCR 98
+++H GG+ID NE W++LV+++AA APGP ++D+ LDFMG CA+A LA E+ RCR
Sbjct 1 MLIHAGGEIDGRNEHLWRQLVTEAAAGVTAPGPLIVDVTGLDFMGCCAFAALADEAQRCR 60
Query 99 RRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA 137
RG+++RLVS+QPIVAR A GL R++P+Y TV+TAL
Sbjct 61 CRGIDLRLVSHQPIVARIAEAGGLSRVLPIYPTVDTALG 99
>gi|333991578|ref|YP_004524192.1| hypothetical protein JDM601_2938 [Mycobacterium sp. JDM601]
gi|333487546|gb|AEF36938.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=164
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/113 (52%), Positives = 77/113 (69%), Gaps = 0/113 (0%)
Query 28 LRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAY 87
LR V E +G A+VV G +DASN W+RLV+++AA+ PGP VID L+FMG CA+
Sbjct 40 LRVVLERSGPALVVAASGSVDASNVEVWRRLVNEAAAVTHGPGPLVIDSSGLEFMGICAF 99
Query 88 AVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPP 140
AVL +ES RCRRRGV++RLVS+QP+V R + A GL + T++ AL P
Sbjct 100 AVLVEESARCRRRGVSLRLVSSQPLVGRVVNAAGLHSELAFCVTIDEALGDTP 152
>gi|15608505|ref|NP_215881.1| anti-anti-sigma factor RSFA (anti-sigma factor antagonist) (regulator
of sigma F A) [Mycobacterium tuberculosis H37Rv]
gi|15840823|ref|NP_335860.1| anti-anti-sigma factor [Mycobacterium tuberculosis CDC1551]
gi|148661155|ref|YP_001282678.1| anti-anti-sigma factor RsfA [Mycobacterium tuberculosis H37Ra]
66 more sequence titles
Length=128
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/132 (48%), Positives = 85/132 (65%), Gaps = 6/132 (4%)
Query 6 IGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAI 65
+ P S T P S + L+A + SAV++H G+IDA+NE WQ LV+K+AA
Sbjct 1 MNPTQAGSFTTPVS------NALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAA 54
Query 66 AIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRL 125
AP P V+++ LDFMG CA AVLA E+ RCRRRGV++RLVS VAR I ACG +
Sbjct 55 TTAPEPLVVNLNGLDFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDV 114
Query 126 IPLYATVETALA 137
+P++ T E+AL+
Sbjct 115 LPVHPTTESALS 126
>gi|289753447|ref|ZP_06512825.1| anti-anti-sigma factor rsfA [Mycobacterium tuberculosis EAS054]
gi|289694034|gb|EFD61463.1| anti-anti-sigma factor rsfA [Mycobacterium tuberculosis EAS054]
Length=128
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/132 (47%), Positives = 84/132 (64%), Gaps = 6/132 (4%)
Query 6 IGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAI 65
+ P S T P S + L+A + SAV++H G+IDA+NE WQ LV+K+AA
Sbjct 1 MNPTQAGSFTTPVS------NALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAA 54
Query 66 AIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRL 125
AP P V+++ LDFMG C AVLA E+ RCRRRGV++RLVS VAR I ACG +
Sbjct 55 TTAPEPLVVNLNGLDFMGCCTVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDV 114
Query 126 IPLYATVETALA 137
+P++ T E+AL+
Sbjct 115 LPVHPTTESALS 126
>gi|31792561|ref|NP_855054.1| hypothetical protein Mb1400c [Mycobacterium bovis AF2122/97]
gi|121637296|ref|YP_977519.1| hypothetical protein BCG_1427c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224989770|ref|YP_002644457.1| hypothetical protein JTY_1401 [Mycobacterium bovis BCG str. Tokyo
172]
8 more sequence titles
Length=128
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/132 (47%), Positives = 85/132 (65%), Gaps = 6/132 (4%)
Query 6 IGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAI 65
+ P S T P S + L+A + SAV++H G+IDA+NE WQ LV+K+AA
Sbjct 1 MNPTQAGSFTTPVS------NALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAA 54
Query 66 AIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRL 125
AP P V+++ LDFMG CA AVLA ++ RCRRRGV++RLVS VAR I ACG +
Sbjct 55 TTAPEPLVVNLNGLDFMGCCAVAVLAHKAERCRRRGVDVRLVSRDRAVARIIHACGYGDV 114
Query 126 IPLYATVETALA 137
+P++ T E+AL+
Sbjct 115 LPVHPTTESALS 126
>gi|289569379|ref|ZP_06449606.1| anti-anti-sigma factor rsfA [Mycobacterium tuberculosis T17]
gi|289543133|gb|EFD46781.1| anti-anti-sigma factor rsfA [Mycobacterium tuberculosis T17]
Length=129
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/109 (53%), Positives = 77/109 (71%), Gaps = 0/109 (0%)
Query 29 RAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYA 88
+A + SAV++H G+IDA+NE WQ LV+K+AA AP P V+++ LDFMG CA A
Sbjct 19 KATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCAVA 78
Query 89 VLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA 137
VLA E+ RCRRRGV++RLVS VAR I ACG ++P++ T E+AL+
Sbjct 79 VLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALS 127
>gi|289751265|ref|ZP_06510643.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289691852|gb|EFD59281.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=86
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/58 (64%), Positives = 47/58 (82%), Gaps = 0/58 (0%)
Query 79 LDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETAL 136
LDFMG CA+A LA E+ RCR RG+++RLVS+QPIVAR A GL R++P+Y TV+TAL
Sbjct 19 LDFMGCCAFAALADEAQRCRCRGIDLRLVSHQPIVARIAEAGGLSRVLPIYPTVDTAL 76
>gi|257055169|ref|YP_003133001.1| anti-anti-sigma factor [Saccharomonospora viridis DSM 43017]
gi|256585041|gb|ACU96174.1| anti-anti-sigma factor [Saccharomonospora viridis DSM 43017]
Length=151
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/117 (36%), Positives = 62/117 (53%), Gaps = 1/117 (0%)
Query 25 HSGLRAVTECTG-SAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMG 83
+S L TEC G + VVV V G+ID S ++++ P ++D+ ++ F+G
Sbjct 15 NSLLGLTTECYGETGVVVTVSGEIDLSTRDELAEYLNRALETVSPPQSLIVDLSEVTFLG 74
Query 84 SCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPP 140
S A+L RRGV +R+V Q V R I A GL ++PL+ TV+ ALA P
Sbjct 75 SAGLALLLDTQDAAVRRGVPLRVVGTQRAVRRPIEAVGLSDMLPLHTTVQEALADVP 131
>gi|258652299|ref|YP_003201455.1| PAS/PAC sensor protein [Nakamurella multipartita DSM 44233]
gi|258555524|gb|ACV78466.1| putative PAS/PAC sensor protein [Nakamurella multipartita DSM
44233]
Length=340
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/110 (34%), Positives = 54/110 (50%), Gaps = 0/110 (0%)
Query 28 LRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAY 87
L A T V+HV GD+D S + L++ A P P V+D+ DL +GS
Sbjct 230 LAATTTIIDGIPVLHVAGDVDLSTGPQFTALLATLVGQAERPTPVVVDLTDLGHLGSVGL 289
Query 88 AVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA 137
AVL Q RC+ +G MR+ + ++ + GL L AT++ ALA
Sbjct 290 AVLTQFHRRCQGKGTPMRVAFGELSSLPSVRSAGLTSFATLDATLDAALA 339
>gi|257056617|ref|YP_003134449.1| anti-anti-sigma factor [Saccharomonospora viridis DSM 43017]
gi|256586489|gb|ACU97622.1| anti-anti-sigma factor [Saccharomonospora viridis DSM 43017]
Length=142
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/133 (32%), Positives = 68/133 (52%), Gaps = 7/133 (5%)
Query 6 IGPGAGPSSTRPSSQPSDLHSGLRAVTE--CTGSAVVVHVGGDIDASNEVAWQRLVSKSA 63
+ PG G +S PS+ D H G+R E G ++ V G++D + Q+ +++ A
Sbjct 5 VAPGTGVTSPLPST---DSH-GIRIDLEPHWGGEVILARVTGELDLLSTPVLQQWIAQHA 60
Query 64 AIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLR 123
+ + G FV+D+RD+DF + VL + GV LV++ IV R + GL
Sbjct 61 PRSRSQG-FVLDMRDVDFFSAAGLGVLTGLADHAAHHGVPWALVADTRIVLRPLYVTGLE 119
Query 124 RLIPLYATVETAL 136
+ +PLY +V AL
Sbjct 120 QRLPLYRSVVDAL 132
>gi|291450033|ref|ZP_06589423.1| predicted protein [Streptomyces albus J1074]
gi|291352982|gb|EFE79884.1| predicted protein [Streptomyces albus J1074]
Length=185
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/127 (33%), Positives = 60/127 (48%), Gaps = 7/127 (5%)
Query 13 SSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPF 72
SS +PS +P+D +R +E G +VV +GGD+D N +S +AA GP
Sbjct 58 SSAQPSPRPADRSLQIRQRSE--GGGIVVQLGGDLDLENITPLGPALSDAAATV--SGPV 113
Query 73 VIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATV 132
V+D+ + F S V Q G +R + P V R GL+ +P++ TV
Sbjct 114 VVDLSGVGFADSSTVNVFLQAYGAI---GPRLRFAALSPFVERLFGLIGLQSALPVHETV 170
Query 133 ETALAPP 139
ALA P
Sbjct 171 AEALAAP 177
>gi|226305069|ref|YP_002765027.1| anti-anti-sigma factor [Rhodococcus erythropolis PR4]
gi|226184184|dbj|BAH32288.1| putative anti-anti-sigma factor [Rhodococcus erythropolis PR4]
Length=199
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/97 (32%), Positives = 53/97 (55%), Gaps = 4/97 (4%)
Query 40 VVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRR 99
V+HV G+ID + A++ ++ A A V+D+ +L+FMG+C +VL+ S R R
Sbjct 97 VIHVRGEIDLMSANAFRDFLTYHVA---ADRTLVVDLSELEFMGTCGLSVLSVLSTRSRD 153
Query 100 RGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETAL 136
G + LV +P V R + A G + Y +++ A+
Sbjct 154 VGGTLALVCARP-VQRLLKAAGQESMFACYESLDHAI 189
>gi|256377999|ref|YP_003101659.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
gi|255922302|gb|ACU37813.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
Length=112
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/101 (31%), Positives = 54/101 (54%), Gaps = 1/101 (0%)
Query 39 VVVHVGGDIDASNEVAWQR-LVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRC 97
V+VH GD+DA + ++R L + A GP V+D+ ++ F S ++L +
Sbjct 9 VIVHASGDVDAISAPGFERQLRTAFTEAADKGGPVVVDLTEVRFFASVGMSLLVEHHRLG 68
Query 98 RRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAP 138
R+G +R+V+ + R + A L +L+ LY TV+ A+ P
Sbjct 69 ARQGTPLRVVAPARAMVRAMRATTLDQLLDLYPTVQEAVVP 109
>gi|109150045|ref|YP_654188.1| anti-anti-sigma regulatory factor RsbV [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length=130
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/109 (29%), Positives = 53/109 (49%), Gaps = 3/109 (2%)
Query 28 LRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAY 87
LR E + +V + G +DA +E ++ ++ + + FVID+ +DF+ S
Sbjct 20 LRGNIEIKANIIVFTLKGQLDAFSEKQFKTFITNTLKKEVLS--FVIDLSKIDFLDSSGL 77
Query 88 AVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETAL 136
L Q S C++ + +V N VA+TI L + L AT++ AL
Sbjct 78 GALVQTSKECKKLKLRFSVVGNSR-VAQTIKLVRLADFLNLKATLQEAL 125
>gi|291438155|ref|ZP_06577545.1| anti-sigma-B factor antagonist [Streptomyces ghanaensis ATCC
14672]
gi|302553081|ref|ZP_07305423.1| anti-sigma F factor antagonist [Streptomyces viridochromogenes
DSM 40736]
gi|302559335|ref|ZP_07311677.1| anti-sigma-B factor antagonist (Anti-anti-sigma-B factor) [Streptomyces
griseoflavus Tu4000]
gi|291341050|gb|EFE68006.1| anti-sigma-B factor antagonist [Streptomyces ghanaensis ATCC
14672]
gi|302470699|gb|EFL33792.1| anti-sigma F factor antagonist [Streptomyces viridochromogenes
DSM 40736]
gi|302476953|gb|EFL40046.1| anti-sigma-B factor antagonist (Anti-anti-sigma-B factor) [Streptomyces
griseoflavus Tu4000]
Length=113
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/109 (32%), Positives = 53/109 (49%), Gaps = 8/109 (7%)
Query 32 TECTGSAVVVHVGGDIDASNEVAW-QRLVSKSAAIAIAPGPF--VIDIRDLDFMGSCAYA 88
TE G +V VGG+ID ++LV + G F V+D+ +DF+ S
Sbjct 7 TETMGDRTIVRVGGEIDVYTAPKLREQLVE-----LVNDGSFHLVVDMEGVDFLDSTGLG 61
Query 89 VLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA 137
VL R R ++RLV NQ + + GL ++ P++ +VE A+A
Sbjct 62 VLVGGLKRVRAHEGSLRLVCNQERILKIFRITGLTKVFPIHTSVEEAVA 110
>gi|297201347|ref|ZP_06918744.1| anti-sigma F factor antagonist [Streptomyces sviceus ATCC 29083]
gi|197712790|gb|EDY56824.1| anti-sigma F factor antagonist [Streptomyces sviceus ATCC 29083]
Length=113
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/109 (32%), Positives = 53/109 (49%), Gaps = 8/109 (7%)
Query 32 TECTGSAVVVHVGGDIDASNEVAW-QRLVSKSAAIAIAPGPF--VIDIRDLDFMGSCAYA 88
TE G +V VGG+ID ++LV + G F V+D+ +DF+ S
Sbjct 7 TETVGDRTIVRVGGEIDVYTAPKLREQLVE-----LVNDGSFHLVVDMEGVDFLDSTGLG 61
Query 89 VLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA 137
VL R R ++RLV NQ + + GL ++ P++ +VE A+A
Sbjct 62 VLVGGLKRVRAHEGSLRLVCNQERILKIFRITGLTKVFPIHTSVEEAVA 110
>gi|120402490|ref|YP_952319.1| anti-sigma-factor antagonist [Mycobacterium vanbaalenii PYR-1]
gi|119955308|gb|ABM12313.1| anti-sigma-factor antagonist [Mycobacterium vanbaalenii PYR-1]
Length=128
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/101 (31%), Positives = 54/101 (54%), Gaps = 2/101 (1%)
Query 36 GSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESV 95
G+A+V+ V GD+DA A + A+A AP V+D+ D++F+ S +VL +
Sbjct 20 GAALVLRVTGDLDAMT--APTLVTHLDIALADAPPVVVVDMTDVEFLSSAGISVLVETHR 77
Query 96 RCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETAL 136
R +++R+V++ P +R L +I LY T+ A+
Sbjct 78 LAERADISLRVVADGPATSRPFRMMRLDEVIDLYPTLADAM 118
>gi|120403518|ref|YP_953347.1| anti-sigma-factor antagonist [Mycobacterium vanbaalenii PYR-1]
gi|119956336|gb|ABM13341.1| anti-sigma-factor antagonist [Mycobacterium vanbaalenii PYR-1]
Length=155
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/108 (35%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query 30 AVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAV 89
AV C+ + + V G+IDA N A R V + I+ V+D+R +DF GS +
Sbjct 29 AVRRCSAHRMAIAVIGEIDAVNGRALGRYVERHTRIS---RQLVLDLRAVDFFGSQGFTA 85
Query 90 LAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA 137
L SV C R V+ +V + P V R +A C +PL + +ALA
Sbjct 86 LYYISVHCARSDVDWVIVGS-PAVRRLLAICDPDGELPLTDALSSALA 132
>gi|134099266|ref|YP_001104927.1| hypothetical protein SACE_2721 [Saccharopolyspora erythraea NRRL
2338]
gi|291009710|ref|ZP_06567683.1| hypothetical protein SeryN2_34775 [Saccharopolyspora erythraea
NRRL 2338]
gi|133911889|emb|CAM02002.1| hypothetical protein SACE_2721 [Saccharopolyspora erythraea NRRL
2338]
Length=141
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/109 (36%), Positives = 52/109 (48%), Gaps = 13/109 (11%)
Query 38 AVVVHVGGDIDASN-----EVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQ 92
AVV+ G +DA+N EV RL + AI V+D++DL F+G VL Q
Sbjct 34 AVVLTARGQLDATNVVRFAEVLRSRLSTPVRAI-------VVDLQDLTFLGVPGLDVLGQ 86
Query 93 ESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPPS 141
V G + LV++ P V R + GL L + VETALA P
Sbjct 87 AHVHAAVHGQRLHLVADHPEVLRALRVAGLAHLAG-HPDVETALADAPE 134
>gi|254388760|ref|ZP_05003993.1| anti-sigma factor antagonist [Streptomyces clavuligerus ATCC
27064]
gi|294813372|ref|ZP_06772015.1| Anti-sigma-B factor antagonist [Streptomyces clavuligerus ATCC
27064]
gi|326441799|ref|ZP_08216533.1| anti-sigma-factor antagonist [Streptomyces clavuligerus ATCC
27064]
gi|60687275|gb|AAX35717.1| BldG [Streptomyces clavuligerus ATCC 27064]
gi|197702480|gb|EDY48292.1| anti-sigma factor antagonist [Streptomyces clavuligerus ATCC
27064]
gi|294325971|gb|EFG07614.1| Anti-sigma-B factor antagonist [Streptomyces clavuligerus ATCC
27064]
Length=117
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/118 (32%), Positives = 56/118 (48%), Gaps = 8/118 (6%)
Query 23 DLHSGLRAVTECTGSAVVVHVGGDIDASNEVAW-QRLVSKSAAIAIAPGPF--VIDIRDL 79
DL R VT G VV VGG+ID ++LV + G + V+D+ +
Sbjct 2 DLSLSTRNVTGPAGDRTVVEVGGEIDVYTAPKLREQLVE-----LVNDGSYHLVVDMEGV 56
Query 80 DFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA 137
DF+ S VL R R ++RLV NQ + + GL ++ P++ TV+ A+A
Sbjct 57 DFLDSTGLGVLVGGLKRVRAHEGSLRLVCNQERILKIFRITGLTKVFPIHTTVDEAVA 114
>gi|145220808|ref|YP_001131486.1| anti-sigma-factor antagonist [Mycobacterium gilvum PYR-GCK]
gi|315442239|ref|YP_004075118.1| anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
[Mycobacterium sp. Spyr1]
gi|145213294|gb|ABP42698.1| anti-sigma-factor antagonist [Mycobacterium gilvum PYR-GCK]
gi|315260542|gb|ADT97283.1| anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
[Mycobacterium sp. Spyr1]
Length=152
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/133 (26%), Positives = 63/133 (48%), Gaps = 12/133 (9%)
Query 4 VAIGPGAGPSSTRPSSQP--------SDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAW 55
+AI PSST+ +P + H + E + V+V + G+IDA+N +
Sbjct 1 MAISEALPPSSTQRVFRPDPTSFELREEHHRATFSACELPPTTVLVTIHGEIDATNNMPL 60
Query 56 QRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVAR 115
+ K + ++D++ ++F + +A L +V C RRGV +L++ P V R
Sbjct 61 AHYIEKRIGDS---RKLIVDLQTVEFFAASGFAALFNVNVVCHRRGVRWQLLAG-PHVRR 116
Query 116 TIAACGLRRLIPL 128
+ C +R +P+
Sbjct 117 LLRVCDPQRELPV 129
>gi|342859087|ref|ZP_08715741.1| anti sigma factor antagonist [Mycobacterium colombiense CECT
3035]
gi|342133328|gb|EGT86531.1| anti sigma factor antagonist [Mycobacterium colombiense CECT
3035]
Length=117
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/106 (34%), Positives = 51/106 (49%), Gaps = 2/106 (1%)
Query 33 ECTGSAVVVHVGGDIDASN--EVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVL 90
E V+V V GD+D+SN E+A + A A P VID++ +DF GS A +
Sbjct 7 EAHDDVVIVSVKGDVDSSNVGELAAHLATALELASAQPIRPVVIDLQAVDFFGSAALNAV 66
Query 91 AQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETAL 136
+ G ++RLV++ V R I L R+ +Y T AL
Sbjct 67 LDCHEDAKAGGTSIRLVADHDQVLRPIQVTELDRVFDIYPTFAAAL 112
>gi|295837419|ref|ZP_06824352.1| anti-sigma-B factor antagonist [Streptomyces sp. SPB74]
gi|302520921|ref|ZP_07273263.1| anti-sigma F factor antagonist [Streptomyces sp. SPB78]
gi|318060831|ref|ZP_07979554.1| anti-sigma-factor antagonist [Streptomyces sp. SA3_actG]
gi|333025382|ref|ZP_08453446.1| putative anti-sigma factor antagonist [Streptomyces sp. Tu6071]
gi|197696065|gb|EDY42998.1| anti-sigma-B factor antagonist [Streptomyces sp. SPB74]
gi|302429816|gb|EFL01632.1| anti-sigma F factor antagonist [Streptomyces sp. SPB78]
gi|332745234|gb|EGJ75675.1| putative anti-sigma factor antagonist [Streptomyces sp. Tu6071]
Length=117
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/118 (32%), Positives = 56/118 (48%), Gaps = 8/118 (6%)
Query 23 DLHSGLRAVTECTGSAVVVHVGGDIDASNEVAW-QRLVSKSAAIAIAPGPF--VIDIRDL 79
DL R V+ G VV VGG+ID ++LV + G F V+D+ +
Sbjct 2 DLSLSTRNVSGPGGDRTVVEVGGEIDVYTAPKLREQLVE-----LVNDGNFHLVVDMEGV 56
Query 80 DFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA 137
DF+ S VL R R ++RLV NQ + + GL ++ P++ +VE A+A
Sbjct 57 DFLDSTGLGVLVGGLKRVRAHEGSLRLVCNQERILKIFRITGLTKVFPIHTSVEEAVA 114
>gi|145225514|ref|YP_001136192.1| anti-sigma-factor antagonist [Mycobacterium gilvum PYR-GCK]
gi|315445867|ref|YP_004078746.1| anti-anti-sigma factor [Mycobacterium sp. Spyr1]
gi|145218000|gb|ABP47404.1| anti-sigma-factor antagonist [Mycobacterium gilvum PYR-GCK]
gi|315264170|gb|ADU00912.1| anti-anti-sigma factor [Mycobacterium sp. Spyr1]
Length=125
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/108 (30%), Positives = 55/108 (51%), Gaps = 6/108 (5%)
Query 36 GSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGP--FVIDIRDLDFMGSCAYAVLAQE 93
G +V+HV GD+D V +S IA+A P ++DI D+ F+ S +L +
Sbjct 22 GDLLVLHVTGDLD----VLTAPTLSTHLDIALADAPPVVIVDISDVSFLSSAGIGLLVET 77
Query 94 SVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPPS 141
R G+++R+V++ +R + + +I LYAT + A A P+
Sbjct 78 HRLTERGGISLRVVADGAATSRPLRMMRIDEVIDLYATTDEAKAGRPA 125
>gi|126433913|ref|YP_001069604.1| anti-sigma-factor antagonist [Mycobacterium sp. JLS]
gi|126233713|gb|ABN97113.1| anti-sigma-factor antagonist [Mycobacterium sp. JLS]
Length=141
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/120 (29%), Positives = 59/120 (50%), Gaps = 6/120 (5%)
Query 17 PSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDI 76
PS++P+ H+ + S VV V G++DA+N + A+ A G ++D+
Sbjct 10 PSTEPTICHTARFEASAPLPSTTVVTVTGELDAANARDFADF-----ALLHAGGALIVDL 64
Query 77 RDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETAL 136
++F G+ ++ L +VRC +N LV + V+R + C +P +VETAL
Sbjct 65 AGVEFFGTAGFSALHTLNVRCAGADINWILVPSA-AVSRLLRICDPDATLPWSESVETAL 123
>gi|317123693|ref|YP_004097805.1| anti-sigma-factor antagonist [Intrasporangium calvum DSM 43043]
gi|315587781|gb|ADU47078.1| anti-sigma-factor antagonist [Intrasporangium calvum DSM 43043]
Length=127
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/104 (28%), Positives = 49/104 (48%), Gaps = 2/104 (1%)
Query 36 GSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESV 95
G VVH+GG+ID + + + I ++D+ ++ F+ S VL
Sbjct 11 GDRTVVHLGGEIDVYTAPFVREKLDEQ--IHAGRADLIVDLSEVTFLDSTGLGVLVGRLK 68
Query 96 RCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPP 139
R RG +++LV V R A GL ++ ++ +E+ALA P
Sbjct 69 FARTRGGSLKLVGTSERVLRVFAITGLDKVFDIHPDLESALAAP 112
>gi|21221968|ref|NP_627747.1| anti-sigma factor antagonist [Streptomyces coelicolor A3(2)]
gi|289770839|ref|ZP_06530217.1| anti-sigma-B factor antagonist [Streptomyces lividans TK24]
gi|7227941|sp|Q9WVX8.1|RSBV_STRCO RecName: Full=Anti-sigma-B factor antagonist; AltName: Full=Anti-anti-sigma-B
factor
gi|4835880|gb|AAD30281.1|AF134889_1 putative anti-anti-sigma factor BldG [Streptomyces coelicolor]
gi|4539567|emb|CAB38486.1| putative anti-sigma factor antagonist [Streptomyces coelicolor
A3(2)]
gi|289701038|gb|EFD68467.1| anti-sigma-B factor antagonist [Streptomyces lividans TK24]
Length=113
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/109 (32%), Positives = 52/109 (48%), Gaps = 8/109 (7%)
Query 32 TECTGSAVVVHVGGDIDASNEVAW-QRLVSKSAAIAIAPGPF--VIDIRDLDFMGSCAYA 88
T G VV VGG+ID ++LV + G F V+D+ +DF+ S
Sbjct 7 TRTVGDRTVVEVGGEIDVYTAPKLREQLVE-----LVNDGSFHLVVDMEGVDFLDSTGLG 61
Query 89 VLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA 137
VL R R ++RLV NQ + + GL ++ P++ +VE A+A
Sbjct 62 VLVGGLKRVRAHEGSLRLVCNQERILKIFRITGLTKVFPIHTSVEEAVA 110
>gi|29831157|ref|NP_825791.1| anti-sigma factor antagonist [Streptomyces avermitilis MA-4680]
gi|29608271|dbj|BAC72326.1| putative anti-sigma factor antagonist [Streptomyces avermitilis
MA-4680]
Length=113
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/109 (32%), Positives = 52/109 (48%), Gaps = 8/109 (7%)
Query 32 TECTGSAVVVHVGGDIDASNEVAW-QRLVSKSAAIAIAPGPF--VIDIRDLDFMGSCAYA 88
T G VV VGG+ID ++LV + G F V+D+ +DF+ S
Sbjct 7 TRTVGDRTVVEVGGEIDVYTAPKLREQLVE-----LVNDGNFHLVVDMEGVDFLDSTGLG 61
Query 89 VLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA 137
VL R R ++RLV NQ + + GL ++ P++ +VE A+A
Sbjct 62 VLVGGLKRVRAHEGSLRLVCNQERILKIFRITGLTKVFPIHTSVEEAVA 110
>gi|254525836|ref|ZP_05137888.1| anti-anti-sigma regulatory factor RsbV [Prochlorococcus marinus
str. MIT 9202]
gi|221537260|gb|EEE39713.1| anti-anti-sigma regulatory factor RsbV [Prochlorococcus marinus
str. MIT 9202]
Length=140
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/113 (28%), Positives = 54/113 (48%), Gaps = 4/113 (3%)
Query 24 LHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMG 83
L LR E + +V G +DA +E ++ V+ + + PFVID+ +DF+
Sbjct 27 LTVSLRGNLEVKTNIIVFTFKGQLDAFSEKQFKTFVTDNLKNEL---PFVIDLTKIDFLD 83
Query 84 SCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETAL 136
S L Q + C++ + +V N VA+TI L + L ++++ AL
Sbjct 84 SSGLGALVQTAKECKKSKLGFSVVGNSR-VAQTIKLVRLGDFLNLKSSLDDAL 135
>gi|108798253|ref|YP_638450.1| anti-sigma-factor antagonist [Mycobacterium sp. MCS]
gi|119867349|ref|YP_937301.1| anti-sigma-factor antagonist [Mycobacterium sp. KMS]
gi|108768672|gb|ABG07394.1| anti-sigma-factor antagonist [Mycobacterium sp. MCS]
gi|119693438|gb|ABL90511.1| anti-sigma-factor antagonist [Mycobacterium sp. KMS]
Length=141
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/120 (28%), Positives = 59/120 (50%), Gaps = 6/120 (5%)
Query 17 PSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDI 76
PS++P+ H+ + S VV V G++DA+N + A+ A G ++D+
Sbjct 10 PSTEPTICHTARFEASAPLPSTTVVTVAGELDAANARDFADF-----ALLHAGGALIVDL 64
Query 77 RDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETAL 136
++F G+ ++ L +VRC +N LV + V+R + C +P +V+TAL
Sbjct 65 AGVEFFGTAGFSALHTLNVRCAGADINWILVPSA-AVSRLLRICDPDATLPWSESVDTAL 123
>gi|256376432|ref|YP_003100092.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
gi|255920735|gb|ACU36246.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
Length=118
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/115 (27%), Positives = 53/115 (47%), Gaps = 0/115 (0%)
Query 23 DLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFM 82
DL + ++ G AVV+HV G+ID R + + A P P V+D+ ++ F
Sbjct 3 DLDEEMSVHSQECGGAVVLHVSGEIDQLTVEPLHRELLSALARVRPPEPVVVDLTEVGFF 62
Query 83 GSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA 137
GS L ++ G + +V+ V R +A GL + ++ T++ AL
Sbjct 63 GSAGLNELVTGHLQAELLGTRLSVVAGHREVLRPLAISGLDEQLDVHPTLQAALG 117
Lambda K H
0.320 0.133 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129250525032
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40