BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1904

Length=143
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841375|ref|NP_336412.1|  anti-anti-sigma factor [Mycobacteri...   287    4e-76
gi|15609041|ref|NP_216420.1|  hypothetical protein Rv1904 [Mycoba...   286    5e-76
gi|31793097|ref|NP_855590.1|  hypothetical protein Mb1939 [Mycoba...   285    2e-75
gi|289758010|ref|ZP_06517388.1|  anti-anti-sigma factor [Mycobact...   285    2e-75
gi|240172581|ref|ZP_04751240.1|  anti-anti-sigma factor [Mycobact...   233    5e-60
gi|323719568|gb|EGB28692.1|  hypothetical protein TMMG_01164 [Myc...   211    3e-53
gi|339294839|gb|AEJ46950.1|  hypothetical protein CCDC5079_1760 [...   201    2e-50
gi|118618334|ref|YP_906666.1|  hypothetical protein MUL_2925 [Myc...   199    2e-49
gi|183982806|ref|YP_001851097.1|  hypothetical protein MMAR_2800 ...   196    7e-49
gi|254819005|ref|ZP_05224006.1|  hypothetical protein MintA_03716...   139    1e-31
gi|326904251|gb|EGE51184.1|  hypothetical protein TBPG_02149 [Myc...   139    1e-31
gi|15609775|ref|NP_217154.1|  hypothetical protein Rv2638 [Mycoba...   139    2e-31
gi|41408840|ref|NP_961676.1|  hypothetical protein MAP2742 [Mycob...   138    3e-31
gi|118462259|ref|YP_882700.1|  anti-anti-sigma factor [Mycobacter...   137    4e-31
gi|296170941|ref|ZP_06852471.1|  SpoIIAA family protein [Mycobact...   132    2e-29
gi|240172519|ref|ZP_04751178.1|  hypothetical protein MkanA1_2460...   132    2e-29
gi|342858531|ref|ZP_08715186.1|  hypothetical protein MCOL_06636 ...   129    2e-28
gi|118618620|ref|YP_906952.1|  hypothetical protein MUL_3282 [Myc...   120    6e-26
gi|183982075|ref|YP_001850366.1|  hypothetical protein MMAR_2061 ...   120    7e-26
gi|254551692|ref|ZP_05142139.1|  hypothetical protein Mtube_14749...   120    8e-26
gi|333991578|ref|YP_004524192.1|  hypothetical protein JDM601_293...   118    3e-25
gi|15608505|ref|NP_215881.1|  anti-anti-sigma factor RSFA (anti-s...   115    2e-24
gi|289753447|ref|ZP_06512825.1|  anti-anti-sigma factor rsfA [Myc...   114    7e-24
gi|31792561|ref|NP_855054.1|  hypothetical protein Mb1400c [Mycob...   113    8e-24
gi|289569379|ref|ZP_06449606.1|  anti-anti-sigma factor rsfA [Myc...   112    1e-23
gi|289751265|ref|ZP_06510643.1|  conserved hypothetical protein [...  79.3    1e-13
gi|257055169|ref|YP_003133001.1|  anti-anti-sigma factor [Sacchar...  58.5    3e-07
gi|258652299|ref|YP_003201455.1|  PAS/PAC sensor protein [Nakamur...  57.4    6e-07
gi|257056617|ref|YP_003134449.1|  anti-anti-sigma factor [Sacchar...  57.4    7e-07
gi|291450033|ref|ZP_06589423.1|  predicted protein [Streptomyces ...  55.1    3e-06
gi|226305069|ref|YP_002765027.1|  anti-anti-sigma factor [Rhodoco...  52.0    3e-05
gi|256377999|ref|YP_003101659.1|  anti-sigma-factor antagonist [A...  52.0    3e-05
gi|109150045|ref|YP_654188.1|  anti-anti-sigma regulatory factor ...  50.8    6e-05
gi|291438155|ref|ZP_06577545.1|  anti-sigma-B factor antagonist [...  50.4    9e-05
gi|297201347|ref|ZP_06918744.1|  anti-sigma F factor antagonist [...  50.4    9e-05
gi|120402490|ref|YP_952319.1|  anti-sigma-factor antagonist [Myco...  50.1    1e-04
gi|120403518|ref|YP_953347.1|  anti-sigma-factor antagonist [Myco...  49.7    1e-04
gi|134099266|ref|YP_001104927.1|  hypothetical protein SACE_2721 ...  49.7    1e-04
gi|254388760|ref|ZP_05003993.1|  anti-sigma factor antagonist [St...  49.7    2e-04
gi|145220808|ref|YP_001131486.1|  anti-sigma-factor antagonist [M...  49.7    2e-04
gi|342859087|ref|ZP_08715741.1|  anti sigma factor antagonist [My...  49.3    2e-04
gi|295837419|ref|ZP_06824352.1|  anti-sigma-B factor antagonist [...  49.3    2e-04
gi|145225514|ref|YP_001136192.1|  anti-sigma-factor antagonist [M...  48.9    2e-04
gi|126433913|ref|YP_001069604.1|  anti-sigma-factor antagonist [M...  48.9    3e-04
gi|317123693|ref|YP_004097805.1|  anti-sigma-factor antagonist [I...  48.9    3e-04
gi|21221968|ref|NP_627747.1|  anti-sigma factor antagonist [Strep...  48.9    3e-04
gi|29831157|ref|NP_825791.1|  anti-sigma factor antagonist [Strep...  48.5    3e-04
gi|254525836|ref|ZP_05137888.1|  anti-anti-sigma regulatory facto...  48.1    4e-04
gi|108798253|ref|YP_638450.1|  anti-sigma-factor antagonist [Myco...  47.8    5e-04
gi|256376432|ref|YP_003100092.1|  anti-sigma-factor antagonist [A...  47.8    5e-04


>gi|15841375|ref|NP_336412.1| anti-anti-sigma factor [Mycobacterium tuberculosis CDC1551]
 gi|254232080|ref|ZP_04925407.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|308231977|ref|ZP_07414465.2| hypothetical protein TMAG_02084 [Mycobacterium tuberculosis SUMu001]
 25 more sequence titles
 Length=144

 Score =  287 bits (734),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 143/143 (100%), Positives = 143/143 (100%), Gaps = 0/143 (0%)

Query  1    MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS  60
            MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS
Sbjct  2    MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS  61

Query  61   KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC  120
            KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC
Sbjct  62   KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC  121

Query  121  GLRRLIPLYATVETALAPPPSAH  143
            GLRRLIPLYATVETALAPPPSAH
Sbjct  122  GLRRLIPLYATVETALAPPPSAH  144


>gi|15609041|ref|NP_216420.1| hypothetical protein Rv1904 [Mycobacterium tuberculosis H37Rv]
 gi|148661712|ref|YP_001283235.1| hypothetical protein MRA_1915 [Mycobacterium tuberculosis H37Ra]
 gi|148823116|ref|YP_001287870.1| hypothetical protein TBFG_11933 [Mycobacterium tuberculosis F11]
 38 more sequence titles
 Length=143

 Score =  286 bits (733),  Expect = 5e-76, Method: Compositional matrix adjust.
 Identities = 143/143 (100%), Positives = 143/143 (100%), Gaps = 0/143 (0%)

Query  1    MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS  60
            MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS
Sbjct  1    MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS  60

Query  61   KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC  120
            KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC
Sbjct  61   KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC  120

Query  121  GLRRLIPLYATVETALAPPPSAH  143
            GLRRLIPLYATVETALAPPPSAH
Sbjct  121  GLRRLIPLYATVETALAPPPSAH  143


>gi|31793097|ref|NP_855590.1| hypothetical protein Mb1939 [Mycobacterium bovis AF2122/97]
 gi|121637810|ref|YP_978033.1| hypothetical protein BCG_1943 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224990294|ref|YP_002644981.1| hypothetical protein JTY_1927 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|31618688|emb|CAD94641.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493457|emb|CAL71930.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224773407|dbj|BAH26213.1| hypothetical protein JTY_1927 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341601837|emb|CCC64511.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=143

 Score =  285 bits (728),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 142/143 (99%), Positives = 142/143 (99%), Gaps = 0/143 (0%)

Query  1    MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS  60
            MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS
Sbjct  1    MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS  60

Query  61   KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC  120
            KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC
Sbjct  61   KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC  120

Query  121  GLRRLIPLYATVETALAPPPSAH  143
            GLRRLIPLYA VETALAPPPSAH
Sbjct  121  GLRRLIPLYAMVETALAPPPSAH  143


>gi|289758010|ref|ZP_06517388.1| anti-anti-sigma factor [Mycobacterium tuberculosis T85]
 gi|294996815|ref|ZP_06802506.1| hypothetical protein Mtub2_20513 [Mycobacterium tuberculosis 
210]
 gi|289713574|gb|EFD77586.1| anti-anti-sigma factor [Mycobacterium tuberculosis T85]
 gi|326903508|gb|EGE50441.1| hypothetical protein TBPG_01384 [Mycobacterium tuberculosis W-148]
Length=143

 Score =  285 bits (728),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 142/143 (99%), Positives = 142/143 (99%), Gaps = 0/143 (0%)

Query  1    MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS  60
            MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS
Sbjct  1    MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS  60

Query  61   KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC  120
            KSAAIAIAPGPFVIDIRDLDFMGSCAYAV AQESVRCRRRGVNMRLVSNQPIVARTIAAC
Sbjct  61   KSAAIAIAPGPFVIDIRDLDFMGSCAYAVWAQESVRCRRRGVNMRLVSNQPIVARTIAAC  120

Query  121  GLRRLIPLYATVETALAPPPSAH  143
            GLRRLIPLYATVETALAPPPSAH
Sbjct  121  GLRRLIPLYATVETALAPPPSAH  143


>gi|240172581|ref|ZP_04751240.1| anti-anti-sigma factor [Mycobacterium kansasii ATCC 12478]
Length=140

 Score =  233 bits (595),  Expect = 5e-60, Method: Compositional matrix adjust.
 Identities = 113/139 (82%), Positives = 126/139 (91%), Gaps = 0/139 (0%)

Query  1    MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS  60
            M TVA+G  +GP+STR S Q  D  SGLRAVTE TGSAVVVHVGGDIDASNE  WQRLV+
Sbjct  1    MDTVALGASSGPASTRLSLQLGDAQSGLRAVTESTGSAVVVHVGGDIDASNEAVWQRLVT  60

Query  61   KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC  120
            +SAAIA+APGPFVID+RDL+FMGSCAYAVLAQESVRCRRRGVN+RLVSNQPIVARTIAAC
Sbjct  61   RSAAIAVAPGPFVIDVRDLEFMGSCAYAVLAQESVRCRRRGVNLRLVSNQPIVARTIAAC  120

Query  121  GLRRLIPLYATVETALAPP  139
            GLRRL+P+Y++VE ALAPP
Sbjct  121  GLRRLLPMYSSVENALAPP  139


>gi|323719568|gb|EGB28692.1| hypothetical protein TMMG_01164 [Mycobacterium tuberculosis CDC1551A]
Length=105

 Score =  211 bits (537),  Expect = 3e-53, Method: Compositional matrix adjust.
 Identities = 104/105 (99%), Positives = 105/105 (100%), Gaps = 0/105 (0%)

Query  39   VVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCR  98
            +VVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCR
Sbjct  1    MVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCR  60

Query  99   RRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPPSAH  143
            RRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPPSAH
Sbjct  61   RRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPPSAH  105


>gi|339294839|gb|AEJ46950.1| hypothetical protein CCDC5079_1760 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339298464|gb|AEJ50574.1| hypothetical protein CCDC5180_1737 [Mycobacterium tuberculosis 
CCDC5180]
Length=101

 Score =  201 bits (512),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 99/101 (99%), Positives = 100/101 (99%), Gaps = 0/101 (0%)

Query  43   VGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGV  102
            +GGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAV AQESVRCRRRGV
Sbjct  1    MGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVWAQESVRCRRRGV  60

Query  103  NMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPPSAH  143
            NMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPPSAH
Sbjct  61   NMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPPSAH  101


>gi|118618334|ref|YP_906666.1| hypothetical protein MUL_2925 [Mycobacterium ulcerans Agy99]
 gi|118570444|gb|ABL05195.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=143

 Score =  199 bits (505),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 115/143 (81%), Positives = 128/143 (90%), Gaps = 0/143 (0%)

Query  1    MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS  60
            M TVA+G     SSTR SS   D H+GLRAVTECTGSAVVVHVGGD+DASNEV WQRLV+
Sbjct  1    MNTVAMGSSPSSSSTRLSSPAGDPHTGLRAVTECTGSAVVVHVGGDVDASNEVVWQRLVN  60

Query  61   KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC  120
            +SAAIAIAPGPFVIDIRDLDF+GSCAYAVLAQESVRCRRRGVN+RLVSNQPIVARTIAAC
Sbjct  61   RSAAIAIAPGPFVIDIRDLDFIGSCAYAVLAQESVRCRRRGVNLRLVSNQPIVARTIAAC  120

Query  121  GLRRLIPLYATVETALAPPPSAH  143
            GLRRL+P+Y++VE AL+P P+ H
Sbjct  121  GLRRLLPMYSSVEAALSPVPNGH  143


>gi|183982806|ref|YP_001851097.1| hypothetical protein MMAR_2800 [Mycobacterium marinum M]
 gi|183176132|gb|ACC41242.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=146

 Score =  196 bits (499),  Expect = 7e-49, Method: Compositional matrix adjust.
 Identities = 114/143 (80%), Positives = 128/143 (90%), Gaps = 0/143 (0%)

Query  1    MRTVAIGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVS  60
            + TVA+G     SSTR SS   D H+GLRAVTECTGSAVVVHVGGD+DASNEV WQRLV+
Sbjct  4    VNTVAMGSSPSSSSTRLSSPAGDPHTGLRAVTECTGSAVVVHVGGDVDASNEVVWQRLVN  63

Query  61   KSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAAC  120
            +SAAIAIAPGPFVIDIRDLDF+GSCAYAVLAQESVRCRRRGVN+RLVSNQPIVARTIAAC
Sbjct  64   RSAAIAIAPGPFVIDIRDLDFIGSCAYAVLAQESVRCRRRGVNLRLVSNQPIVARTIAAC  123

Query  121  GLRRLIPLYATVETALAPPPSAH  143
            GLRRL+P+Y++VE AL+P P+ H
Sbjct  124  GLRRLLPMYSSVEAALSPVPNGH  146


>gi|254819005|ref|ZP_05224006.1| hypothetical protein MintA_03716 [Mycobacterium intracellulare 
ATCC 13950]
Length=145

 Score =  139 bits (350),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 65/124 (53%), Positives = 93/124 (75%), Gaps = 0/124 (0%)

Query  14   STRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFV  73
            ST+   +  D HS LRA  +  G AV+++ GG+IDA NE  W+ LVS++A +  APGPFV
Sbjct  17   STKLVYELGDPHSTLRATADRCGPAVLIYAGGEIDACNEHTWRHLVSEAAGVVTAPGPFV  76

Query  74   IDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVE  133
            +D+  L+FMG CA+AVLA E+ RC++RG+++RLVS +PIVAR I ACGL  ++P+Y TV+
Sbjct  77   VDVTGLEFMGCCAFAVLADEAKRCQKRGIDLRLVSCEPIVARIIDACGLGGVLPIYPTVD  136

Query  134  TALA  137
            +AL+
Sbjct  137  SALS  140


>gi|326904251|gb|EGE51184.1| hypothetical protein TBPG_02149 [Mycobacterium tuberculosis W-148]
Length=148

 Score =  139 bits (350),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 66/126 (53%), Positives = 92/126 (74%), Gaps = 0/126 (0%)

Query  12   PSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGP  71
            P S R   +  D HS LRA T+ +G+A+++H GG+ID  NE  W++LV+++AA   APGP
Sbjct  14   PLSLRLVHELGDPHSTLRATTDGSGAALLIHAGGEIDGRNEHLWRQLVTEAAAGVTAPGP  73

Query  72   FVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYAT  131
             ++D+  LDFMG CA+A LA E+ RCR RG+++RLVS+QPIVAR   A GL R++P+Y T
Sbjct  74   LIVDVTGLDFMGCCAFAALADEAQRCRCRGIDLRLVSHQPIVARIAEAGGLSRVLPIYPT  133

Query  132  VETALA  137
            V+TAL 
Sbjct  134  VDTALG  139


>gi|15609775|ref|NP_217154.1| hypothetical protein Rv2638 [Mycobacterium tuberculosis H37Rv]
 gi|15842179|ref|NP_337216.1| SpoIIAA family protein [Mycobacterium tuberculosis CDC1551]
 gi|31793824|ref|NP_856317.1| hypothetical protein Mb2671 [Mycobacterium bovis AF2122/97]
 74 more sequence titles
 Length=148

 Score =  139 bits (349),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 66/126 (53%), Positives = 92/126 (74%), Gaps = 0/126 (0%)

Query  12   PSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGP  71
            P S R   +  D HS LRA T+ +G+A+++H GG+ID  NE  W++LV+++AA   APGP
Sbjct  14   PLSPRLVHELGDPHSTLRATTDGSGAALLIHAGGEIDGRNEHLWRQLVTEAAAGVTAPGP  73

Query  72   FVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYAT  131
             ++D+  LDFMG CA+A LA E+ RCR RG+++RLVS+QPIVAR   A GL R++P+Y T
Sbjct  74   LIVDVTGLDFMGCCAFAALADEAQRCRCRGIDLRLVSHQPIVARIAEAGGLSRVLPIYPT  133

Query  132  VETALA  137
            V+TAL 
Sbjct  134  VDTALG  139


>gi|41408840|ref|NP_961676.1| hypothetical protein MAP2742 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|254775968|ref|ZP_05217484.1| hypothetical protein MaviaA2_15040 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41397199|gb|AAS05059.1| hypothetical protein MAP_2742 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336458883|gb|EGO37840.1| anti-anti-sigma factor [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=145

 Score =  138 bits (348),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 64/124 (52%), Positives = 92/124 (75%), Gaps = 0/124 (0%)

Query  14   STRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFV  73
            ST+   +  D +S LRA T  +GSAV+++ GG+IDA NE  W+ LVS++A +   PGPFV
Sbjct  17   STKLVYELGDPNSTLRATTARSGSAVLIYAGGEIDACNEDTWRHLVSEAAGVVTTPGPFV  76

Query  74   IDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVE  133
            +D+  L+FMG CA+AVL  E+ RCR+RG+++RLVS +PIV R I ACGL  ++P+Y TV+
Sbjct  77   VDVTGLEFMGCCAFAVLTDEAKRCRQRGIDLRLVSCEPIVGRIIDACGLSDILPIYPTVD  136

Query  134  TALA  137
            +AL+
Sbjct  137  SALS  140


>gi|118462259|ref|YP_882700.1| anti-anti-sigma factor [Mycobacterium avium 104]
 gi|118163546|gb|ABK64443.1| anti-anti-sigma factor [Mycobacterium avium 104]
Length=140

 Score =  137 bits (346),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 64/124 (52%), Positives = 92/124 (75%), Gaps = 0/124 (0%)

Query  14   STRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFV  73
            ST+   +  D +S LRA T  +GSAV+++ GG+IDA NE  W+ LVS++A +   PGPFV
Sbjct  12   STKLVYELGDPNSTLRATTARSGSAVLIYAGGEIDACNEDTWRHLVSEAAGVVATPGPFV  71

Query  74   IDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVE  133
            +D+  L+FMG CA+AVL  E+ RCR+RG+++RLVS +PIV R I ACGL  ++P+Y TV+
Sbjct  72   VDVTGLEFMGCCAFAVLTDEAKRCRQRGIDLRLVSCEPIVGRIIDACGLSDILPIYPTVD  131

Query  134  TALA  137
            +AL+
Sbjct  132  SALS  135


>gi|296170941|ref|ZP_06852471.1| SpoIIAA family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894437|gb|EFG74182.1| SpoIIAA family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=137

 Score =  132 bits (332),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 89/124 (72%), Gaps = 0/124 (0%)

Query  14   STRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFV  73
            ST+   +  D  S LRA  + +G AV+++ GG++DA NE  W++L+ + A +AIAPGP V
Sbjct  9    STKLVYELGDPTSTLRATADRSGPAVLIYAGGEVDACNEHTWRQLLGEVAGVAIAPGPLV  68

Query  74   IDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVE  133
            ID+  L+FM  CA+AVLA E+ RC+ RG+ +RLVS +PIVAR + ACGL  L+P+Y T +
Sbjct  69   IDVTGLEFMACCAFAVLADEAKRCKERGIELRLVSREPIVARIVDACGLSGLLPIYPTAD  128

Query  134  TALA  137
            +ALA
Sbjct  129  SALA  132


>gi|240172519|ref|ZP_04751178.1| hypothetical protein MkanA1_24605 [Mycobacterium kansasii ATCC 
12478]
Length=142

 Score =  132 bits (331),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 64/125 (52%), Positives = 87/125 (70%), Gaps = 0/125 (0%)

Query  14   STRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFV  73
            STR  S+  D  S LRA T+  G+AV++H GG++DA NE  W++L++++A      G FV
Sbjct  16   STRLVSELGDPRSTLRATTDRNGAAVLIHAGGEVDACNEHTWRQLITETATSVPGSGLFV  75

Query  74   IDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVE  133
            +D+  LDFMG CAY VLA+E+ RCRRRG  +RLV+ Q  VAR +AACG   L+P+Y TV 
Sbjct  76   VDVTGLDFMGCCAYTVLAEEADRCRRRGAELRLVTPQSTVARIVAACGFSDLLPVYPTVA  135

Query  134  TALAP  138
            +AL P
Sbjct  136  SALRP  140


>gi|342858531|ref|ZP_08715186.1| hypothetical protein MCOL_06636 [Mycobacterium colombiense CECT 
3035]
 gi|342134235|gb|EGT87415.1| hypothetical protein MCOL_06636 [Mycobacterium colombiense CECT 
3035]
Length=145

 Score =  129 bits (323),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 61/124 (50%), Positives = 89/124 (72%), Gaps = 0/124 (0%)

Query  14   STRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFV  73
            ST+   +  D +S LRA  + +G++VV++ GG++DA NE  W  LV ++A+   APG FV
Sbjct  17   STKLVYELGDPNSTLRATADRSGASVVIYAGGEVDAYNEDTWGHLVREAASGVTAPGFFV  76

Query  74   IDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVE  133
            +D+  LDFMG CA+AVLA+E+  CR R +++RLVS  PIV R + ACGL RL+P+Y TV+
Sbjct  77   VDVTGLDFMGCCAFAVLAEEAKGCRERDIDLRLVSRDPIVERIVDACGLGRLLPIYPTVD  136

Query  134  TALA  137
            +AL+
Sbjct  137  SALS  140


>gi|118618620|ref|YP_906952.1| hypothetical protein MUL_3282 [Mycobacterium ulcerans Agy99]
 gi|118570730|gb|ABL05481.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=146

 Score =  120 bits (302),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 60/127 (48%), Positives = 88/127 (70%), Gaps = 1/127 (0%)

Query  14   STRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFV  73
            S R   +  D HS LRA T+   +AV++H GG++DA+NE  W++L++++AA A +PG FV
Sbjct  16   SIRLLRELGDPHSTLRAATDFRSTAVLIHAGGEVDAANEHTWRQLIAETAASAPSPGLFV  75

Query  74   IDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVS-NQPIVARTIAACGLRRLIPLYATV  132
            +D+  LDFMG CA+ VLA+++ RCR RGV +R+ S     V R +AACGL   +P+Y +V
Sbjct  76   VDVSGLDFMGCCAFEVLAEQAGRCRARGVELRIASAAHTRVTRIVAACGLSDALPVYRSV  135

Query  133  ETALAPP  139
            + ALA P
Sbjct  136  DAALALP  142


>gi|183982075|ref|YP_001850366.1| hypothetical protein MMAR_2061 [Mycobacterium marinum M]
 gi|183175401|gb|ACC40511.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=146

 Score =  120 bits (301),  Expect = 7e-26, Method: Compositional matrix adjust.
 Identities = 59/127 (47%), Positives = 88/127 (70%), Gaps = 1/127 (0%)

Query  14   STRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFV  73
            S R   +  D HS LRA T+   +AV++H GG++DA+NE  W++L++++AA A +PG F+
Sbjct  16   SIRLVRELGDPHSTLRATTDFRSAAVLIHAGGEVDAANEHTWRQLIAETAASAPSPGLFI  75

Query  74   IDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVS-NQPIVARTIAACGLRRLIPLYATV  132
            +D+  LDFMG CA+ VLA+++ RCR RGV +R+ S     V R +AACGL   +P+Y +V
Sbjct  76   VDVSGLDFMGCCAFEVLAEQAGRCRARGVELRIASAAHTRVTRIVAACGLSDALPVYRSV  135

Query  133  ETALAPP  139
            + ALA P
Sbjct  136  DAALALP  142


>gi|254551692|ref|ZP_05142139.1| hypothetical protein Mtube_14749 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|339295512|gb|AEJ47623.1| hypothetical protein CCDC5079_2433 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339299130|gb|AEJ51240.1| hypothetical protein CCDC5180_2403 [Mycobacterium tuberculosis 
CCDC5180]
Length=108

 Score =  120 bits (300),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 54/99 (55%), Positives = 76/99 (77%), Gaps = 0/99 (0%)

Query  39   VVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCR  98
            +++H GG+ID  NE  W++LV+++AA   APGP ++D+  LDFMG CA+A LA E+ RCR
Sbjct  1    MLIHAGGEIDGRNEHLWRQLVTEAAAGVTAPGPLIVDVTGLDFMGCCAFAALADEAQRCR  60

Query  99   RRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA  137
             RG+++RLVS+QPIVAR   A GL R++P+Y TV+TAL 
Sbjct  61   CRGIDLRLVSHQPIVARIAEAGGLSRVLPIYPTVDTALG  99


>gi|333991578|ref|YP_004524192.1| hypothetical protein JDM601_2938 [Mycobacterium sp. JDM601]
 gi|333487546|gb|AEF36938.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=164

 Score =  118 bits (295),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 58/113 (52%), Positives = 77/113 (69%), Gaps = 0/113 (0%)

Query  28   LRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAY  87
            LR V E +G A+VV   G +DASN   W+RLV+++AA+   PGP VID   L+FMG CA+
Sbjct  40   LRVVLERSGPALVVAASGSVDASNVEVWRRLVNEAAAVTHGPGPLVIDSSGLEFMGICAF  99

Query  88   AVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPP  140
            AVL +ES RCRRRGV++RLVS+QP+V R + A GL   +    T++ AL   P
Sbjct  100  AVLVEESARCRRRGVSLRLVSSQPLVGRVVNAAGLHSELAFCVTIDEALGDTP  152


>gi|15608505|ref|NP_215881.1| anti-anti-sigma factor RSFA (anti-sigma factor antagonist) (regulator 
of sigma F A) [Mycobacterium tuberculosis H37Rv]
 gi|15840823|ref|NP_335860.1| anti-anti-sigma factor [Mycobacterium tuberculosis CDC1551]
 gi|148661155|ref|YP_001282678.1| anti-anti-sigma factor RsfA [Mycobacterium tuberculosis H37Ra]
 66 more sequence titles
 Length=128

 Score =  115 bits (287),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 63/132 (48%), Positives = 85/132 (65%), Gaps = 6/132 (4%)

Query  6    IGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAI  65
            + P    S T P S      + L+A  +   SAV++H  G+IDA+NE  WQ LV+K+AA 
Sbjct  1    MNPTQAGSFTTPVS------NALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAA  54

Query  66   AIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRL  125
              AP P V+++  LDFMG CA AVLA E+ RCRRRGV++RLVS    VAR I ACG   +
Sbjct  55   TTAPEPLVVNLNGLDFMGCCAVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDV  114

Query  126  IPLYATVETALA  137
            +P++ T E+AL+
Sbjct  115  LPVHPTTESALS  126


>gi|289753447|ref|ZP_06512825.1| anti-anti-sigma factor rsfA [Mycobacterium tuberculosis EAS054]
 gi|289694034|gb|EFD61463.1| anti-anti-sigma factor rsfA [Mycobacterium tuberculosis EAS054]
Length=128

 Score =  114 bits (284),  Expect = 7e-24, Method: Compositional matrix adjust.
 Identities = 62/132 (47%), Positives = 84/132 (64%), Gaps = 6/132 (4%)

Query  6    IGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAI  65
            + P    S T P S      + L+A  +   SAV++H  G+IDA+NE  WQ LV+K+AA 
Sbjct  1    MNPTQAGSFTTPVS------NALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAA  54

Query  66   AIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRL  125
              AP P V+++  LDFMG C  AVLA E+ RCRRRGV++RLVS    VAR I ACG   +
Sbjct  55   TTAPEPLVVNLNGLDFMGCCTVAVLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDV  114

Query  126  IPLYATVETALA  137
            +P++ T E+AL+
Sbjct  115  LPVHPTTESALS  126


>gi|31792561|ref|NP_855054.1| hypothetical protein Mb1400c [Mycobacterium bovis AF2122/97]
 gi|121637296|ref|YP_977519.1| hypothetical protein BCG_1427c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224989770|ref|YP_002644457.1| hypothetical protein JTY_1401 [Mycobacterium bovis BCG str. Tokyo 
172]
 8 more sequence titles
 Length=128

 Score =  113 bits (283),  Expect = 8e-24, Method: Compositional matrix adjust.
 Identities = 62/132 (47%), Positives = 85/132 (65%), Gaps = 6/132 (4%)

Query  6    IGPGAGPSSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAI  65
            + P    S T P S      + L+A  +   SAV++H  G+IDA+NE  WQ LV+K+AA 
Sbjct  1    MNPTQAGSFTTPVS------NALKATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAA  54

Query  66   AIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRL  125
              AP P V+++  LDFMG CA AVLA ++ RCRRRGV++RLVS    VAR I ACG   +
Sbjct  55   TTAPEPLVVNLNGLDFMGCCAVAVLAHKAERCRRRGVDVRLVSRDRAVARIIHACGYGDV  114

Query  126  IPLYATVETALA  137
            +P++ T E+AL+
Sbjct  115  LPVHPTTESALS  126


>gi|289569379|ref|ZP_06449606.1| anti-anti-sigma factor rsfA [Mycobacterium tuberculosis T17]
 gi|289543133|gb|EFD46781.1| anti-anti-sigma factor rsfA [Mycobacterium tuberculosis T17]
Length=129

 Score =  112 bits (281),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 57/109 (53%), Positives = 77/109 (71%), Gaps = 0/109 (0%)

Query  29   RAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYA  88
            +A  +   SAV++H  G+IDA+NE  WQ LV+K+AA   AP P V+++  LDFMG CA A
Sbjct  19   KATIQHHDSAVIIHARGEIDAANEHTWQDLVTKAAAATTAPEPLVVNLNGLDFMGCCAVA  78

Query  89   VLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA  137
            VLA E+ RCRRRGV++RLVS    VAR I ACG   ++P++ T E+AL+
Sbjct  79   VLAHEAERCRRRGVDVRLVSRDRAVARIIHACGYGDVLPVHPTTESALS  127


>gi|289751265|ref|ZP_06510643.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289691852|gb|EFD59281.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=86

 Score = 79.3 bits (194),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 37/58 (64%), Positives = 47/58 (82%), Gaps = 0/58 (0%)

Query  79   LDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETAL  136
            LDFMG CA+A LA E+ RCR RG+++RLVS+QPIVAR   A GL R++P+Y TV+TAL
Sbjct  19   LDFMGCCAFAALADEAQRCRCRGIDLRLVSHQPIVARIAEAGGLSRVLPIYPTVDTAL  76


>gi|257055169|ref|YP_003133001.1| anti-anti-sigma factor [Saccharomonospora viridis DSM 43017]
 gi|256585041|gb|ACU96174.1| anti-anti-sigma factor [Saccharomonospora viridis DSM 43017]
Length=151

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 42/117 (36%), Positives = 62/117 (53%), Gaps = 1/117 (0%)

Query  25   HSGLRAVTECTG-SAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMG  83
            +S L   TEC G + VVV V G+ID S        ++++      P   ++D+ ++ F+G
Sbjct  15   NSLLGLTTECYGETGVVVTVSGEIDLSTRDELAEYLNRALETVSPPQSLIVDLSEVTFLG  74

Query  84   SCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPP  140
            S   A+L        RRGV +R+V  Q  V R I A GL  ++PL+ TV+ ALA  P
Sbjct  75   SAGLALLLDTQDAAVRRGVPLRVVGTQRAVRRPIEAVGLSDMLPLHTTVQEALADVP  131


>gi|258652299|ref|YP_003201455.1| PAS/PAC sensor protein [Nakamurella multipartita DSM 44233]
 gi|258555524|gb|ACV78466.1| putative PAS/PAC sensor protein [Nakamurella multipartita DSM 
44233]
Length=340

 Score = 57.4 bits (137),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 37/110 (34%), Positives = 54/110 (50%), Gaps = 0/110 (0%)

Query  28   LRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAY  87
            L A T       V+HV GD+D S    +  L++     A  P P V+D+ DL  +GS   
Sbjct  230  LAATTTIIDGIPVLHVAGDVDLSTGPQFTALLATLVGQAERPTPVVVDLTDLGHLGSVGL  289

Query  88   AVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA  137
            AVL Q   RC+ +G  MR+   +     ++ + GL     L AT++ ALA
Sbjct  290  AVLTQFHRRCQGKGTPMRVAFGELSSLPSVRSAGLTSFATLDATLDAALA  339


>gi|257056617|ref|YP_003134449.1| anti-anti-sigma factor [Saccharomonospora viridis DSM 43017]
 gi|256586489|gb|ACU97622.1| anti-anti-sigma factor [Saccharomonospora viridis DSM 43017]
Length=142

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 42/133 (32%), Positives = 68/133 (52%), Gaps = 7/133 (5%)

Query  6    IGPGAGPSSTRPSSQPSDLHSGLRAVTE--CTGSAVVVHVGGDIDASNEVAWQRLVSKSA  63
            + PG G +S  PS+   D H G+R   E    G  ++  V G++D  +    Q+ +++ A
Sbjct  5    VAPGTGVTSPLPST---DSH-GIRIDLEPHWGGEVILARVTGELDLLSTPVLQQWIAQHA  60

Query  64   AIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLR  123
              + + G FV+D+RD+DF  +    VL   +      GV   LV++  IV R +   GL 
Sbjct  61   PRSRSQG-FVLDMRDVDFFSAAGLGVLTGLADHAAHHGVPWALVADTRIVLRPLYVTGLE  119

Query  124  RLIPLYATVETAL  136
            + +PLY +V  AL
Sbjct  120  QRLPLYRSVVDAL  132


>gi|291450033|ref|ZP_06589423.1| predicted protein [Streptomyces albus J1074]
 gi|291352982|gb|EFE79884.1| predicted protein [Streptomyces albus J1074]
Length=185

 Score = 55.1 bits (131),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 41/127 (33%), Positives = 60/127 (48%), Gaps = 7/127 (5%)

Query  13   SSTRPSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPF  72
            SS +PS +P+D    +R  +E  G  +VV +GGD+D  N       +S +AA     GP 
Sbjct  58   SSAQPSPRPADRSLQIRQRSE--GGGIVVQLGGDLDLENITPLGPALSDAAATV--SGPV  113

Query  73   VIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATV  132
            V+D+  + F  S    V  Q        G  +R  +  P V R     GL+  +P++ TV
Sbjct  114  VVDLSGVGFADSSTVNVFLQAYGAI---GPRLRFAALSPFVERLFGLIGLQSALPVHETV  170

Query  133  ETALAPP  139
              ALA P
Sbjct  171  AEALAAP  177


>gi|226305069|ref|YP_002765027.1| anti-anti-sigma factor [Rhodococcus erythropolis PR4]
 gi|226184184|dbj|BAH32288.1| putative anti-anti-sigma factor [Rhodococcus erythropolis PR4]
Length=199

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 31/97 (32%), Positives = 53/97 (55%), Gaps = 4/97 (4%)

Query  40   VVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRR  99
            V+HV G+ID  +  A++  ++   A   A    V+D+ +L+FMG+C  +VL+  S R R 
Sbjct  97   VIHVRGEIDLMSANAFRDFLTYHVA---ADRTLVVDLSELEFMGTCGLSVLSVLSTRSRD  153

Query  100  RGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETAL  136
             G  + LV  +P V R + A G   +   Y +++ A+
Sbjct  154  VGGTLALVCARP-VQRLLKAAGQESMFACYESLDHAI  189


>gi|256377999|ref|YP_003101659.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
 gi|255922302|gb|ACU37813.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
Length=112

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 31/101 (31%), Positives = 54/101 (54%), Gaps = 1/101 (0%)

Query  39   VVVHVGGDIDASNEVAWQR-LVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRC  97
            V+VH  GD+DA +   ++R L +     A   GP V+D+ ++ F  S   ++L +     
Sbjct  9    VIVHASGDVDAISAPGFERQLRTAFTEAADKGGPVVVDLTEVRFFASVGMSLLVEHHRLG  68

Query  98   RRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAP  138
             R+G  +R+V+    + R + A  L +L+ LY TV+ A+ P
Sbjct  69   ARQGTPLRVVAPARAMVRAMRATTLDQLLDLYPTVQEAVVP  109


>gi|109150045|ref|YP_654188.1| anti-anti-sigma regulatory factor RsbV [Prochlorococcus marinus 
subsp. pastoris str. CCMP1986]
Length=130

 Score = 50.8 bits (120),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 31/109 (29%), Positives = 53/109 (49%), Gaps = 3/109 (2%)

Query  28   LRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAY  87
            LR   E   + +V  + G +DA +E  ++  ++ +    +    FVID+  +DF+ S   
Sbjct  20   LRGNIEIKANIIVFTLKGQLDAFSEKQFKTFITNTLKKEVLS--FVIDLSKIDFLDSSGL  77

Query  88   AVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETAL  136
              L Q S  C++  +   +V N   VA+TI    L   + L AT++ AL
Sbjct  78   GALVQTSKECKKLKLRFSVVGNSR-VAQTIKLVRLADFLNLKATLQEAL  125


>gi|291438155|ref|ZP_06577545.1| anti-sigma-B factor antagonist [Streptomyces ghanaensis ATCC 
14672]
 gi|302553081|ref|ZP_07305423.1| anti-sigma F factor antagonist [Streptomyces viridochromogenes 
DSM 40736]
 gi|302559335|ref|ZP_07311677.1| anti-sigma-B factor antagonist (Anti-anti-sigma-B factor) [Streptomyces 
griseoflavus Tu4000]
 gi|291341050|gb|EFE68006.1| anti-sigma-B factor antagonist [Streptomyces ghanaensis ATCC 
14672]
 gi|302470699|gb|EFL33792.1| anti-sigma F factor antagonist [Streptomyces viridochromogenes 
DSM 40736]
 gi|302476953|gb|EFL40046.1| anti-sigma-B factor antagonist (Anti-anti-sigma-B factor) [Streptomyces 
griseoflavus Tu4000]
Length=113

 Score = 50.4 bits (119),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 34/109 (32%), Positives = 53/109 (49%), Gaps = 8/109 (7%)

Query  32   TECTGSAVVVHVGGDIDASNEVAW-QRLVSKSAAIAIAPGPF--VIDIRDLDFMGSCAYA  88
            TE  G   +V VGG+ID        ++LV       +  G F  V+D+  +DF+ S    
Sbjct  7    TETMGDRTIVRVGGEIDVYTAPKLREQLVE-----LVNDGSFHLVVDMEGVDFLDSTGLG  61

Query  89   VLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA  137
            VL     R R    ++RLV NQ  + +     GL ++ P++ +VE A+A
Sbjct  62   VLVGGLKRVRAHEGSLRLVCNQERILKIFRITGLTKVFPIHTSVEEAVA  110


>gi|297201347|ref|ZP_06918744.1| anti-sigma F factor antagonist [Streptomyces sviceus ATCC 29083]
 gi|197712790|gb|EDY56824.1| anti-sigma F factor antagonist [Streptomyces sviceus ATCC 29083]
Length=113

 Score = 50.4 bits (119),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 34/109 (32%), Positives = 53/109 (49%), Gaps = 8/109 (7%)

Query  32   TECTGSAVVVHVGGDIDASNEVAW-QRLVSKSAAIAIAPGPF--VIDIRDLDFMGSCAYA  88
            TE  G   +V VGG+ID        ++LV       +  G F  V+D+  +DF+ S    
Sbjct  7    TETVGDRTIVRVGGEIDVYTAPKLREQLVE-----LVNDGSFHLVVDMEGVDFLDSTGLG  61

Query  89   VLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA  137
            VL     R R    ++RLV NQ  + +     GL ++ P++ +VE A+A
Sbjct  62   VLVGGLKRVRAHEGSLRLVCNQERILKIFRITGLTKVFPIHTSVEEAVA  110


>gi|120402490|ref|YP_952319.1| anti-sigma-factor antagonist [Mycobacterium vanbaalenii PYR-1]
 gi|119955308|gb|ABM12313.1| anti-sigma-factor antagonist [Mycobacterium vanbaalenii PYR-1]
Length=128

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 31/101 (31%), Positives = 54/101 (54%), Gaps = 2/101 (1%)

Query  36   GSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESV  95
            G+A+V+ V GD+DA    A   +     A+A AP   V+D+ D++F+ S   +VL +   
Sbjct  20   GAALVLRVTGDLDAMT--APTLVTHLDIALADAPPVVVVDMTDVEFLSSAGISVLVETHR  77

Query  96   RCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETAL  136
               R  +++R+V++ P  +R      L  +I LY T+  A+
Sbjct  78   LAERADISLRVVADGPATSRPFRMMRLDEVIDLYPTLADAM  118


>gi|120403518|ref|YP_953347.1| anti-sigma-factor antagonist [Mycobacterium vanbaalenii PYR-1]
 gi|119956336|gb|ABM13341.1| anti-sigma-factor antagonist [Mycobacterium vanbaalenii PYR-1]
Length=155

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 37/108 (35%), Positives = 54/108 (50%), Gaps = 4/108 (3%)

Query  30   AVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAV  89
            AV  C+   + + V G+IDA N  A  R V +   I+      V+D+R +DF GS  +  
Sbjct  29   AVRRCSAHRMAIAVIGEIDAVNGRALGRYVERHTRIS---RQLVLDLRAVDFFGSQGFTA  85

Query  90   LAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA  137
            L   SV C R  V+  +V + P V R +A C     +PL   + +ALA
Sbjct  86   LYYISVHCARSDVDWVIVGS-PAVRRLLAICDPDGELPLTDALSSALA  132


>gi|134099266|ref|YP_001104927.1| hypothetical protein SACE_2721 [Saccharopolyspora erythraea NRRL 
2338]
 gi|291009710|ref|ZP_06567683.1| hypothetical protein SeryN2_34775 [Saccharopolyspora erythraea 
NRRL 2338]
 gi|133911889|emb|CAM02002.1| hypothetical protein SACE_2721 [Saccharopolyspora erythraea NRRL 
2338]
Length=141

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 39/109 (36%), Positives = 52/109 (48%), Gaps = 13/109 (11%)

Query  38   AVVVHVGGDIDASN-----EVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQ  92
            AVV+   G +DA+N     EV   RL +   AI       V+D++DL F+G     VL Q
Sbjct  34   AVVLTARGQLDATNVVRFAEVLRSRLSTPVRAI-------VVDLQDLTFLGVPGLDVLGQ  86

Query  93   ESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPPS  141
              V     G  + LV++ P V R +   GL  L   +  VETALA  P 
Sbjct  87   AHVHAAVHGQRLHLVADHPEVLRALRVAGLAHLAG-HPDVETALADAPE  134


>gi|254388760|ref|ZP_05003993.1| anti-sigma factor antagonist [Streptomyces clavuligerus ATCC 
27064]
 gi|294813372|ref|ZP_06772015.1| Anti-sigma-B factor antagonist [Streptomyces clavuligerus ATCC 
27064]
 gi|326441799|ref|ZP_08216533.1| anti-sigma-factor antagonist [Streptomyces clavuligerus ATCC 
27064]
 gi|60687275|gb|AAX35717.1| BldG [Streptomyces clavuligerus ATCC 27064]
 gi|197702480|gb|EDY48292.1| anti-sigma factor antagonist [Streptomyces clavuligerus ATCC 
27064]
 gi|294325971|gb|EFG07614.1| Anti-sigma-B factor antagonist [Streptomyces clavuligerus ATCC 
27064]
Length=117

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 37/118 (32%), Positives = 56/118 (48%), Gaps = 8/118 (6%)

Query  23   DLHSGLRAVTECTGSAVVVHVGGDIDASNEVAW-QRLVSKSAAIAIAPGPF--VIDIRDL  79
            DL    R VT   G   VV VGG+ID        ++LV       +  G +  V+D+  +
Sbjct  2    DLSLSTRNVTGPAGDRTVVEVGGEIDVYTAPKLREQLVE-----LVNDGSYHLVVDMEGV  56

Query  80   DFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA  137
            DF+ S    VL     R R    ++RLV NQ  + +     GL ++ P++ TV+ A+A
Sbjct  57   DFLDSTGLGVLVGGLKRVRAHEGSLRLVCNQERILKIFRITGLTKVFPIHTTVDEAVA  114


>gi|145220808|ref|YP_001131486.1| anti-sigma-factor antagonist [Mycobacterium gilvum PYR-GCK]
 gi|315442239|ref|YP_004075118.1| anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) 
[Mycobacterium sp. Spyr1]
 gi|145213294|gb|ABP42698.1| anti-sigma-factor antagonist [Mycobacterium gilvum PYR-GCK]
 gi|315260542|gb|ADT97283.1| anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) 
[Mycobacterium sp. Spyr1]
Length=152

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 34/133 (26%), Positives = 63/133 (48%), Gaps = 12/133 (9%)

Query  4    VAIGPGAGPSSTRPSSQP--------SDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAW  55
            +AI     PSST+   +P         + H    +  E   + V+V + G+IDA+N +  
Sbjct  1    MAISEALPPSSTQRVFRPDPTSFELREEHHRATFSACELPPTTVLVTIHGEIDATNNMPL  60

Query  56   QRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVAR  115
               + K    +      ++D++ ++F  +  +A L   +V C RRGV  +L++  P V R
Sbjct  61   AHYIEKRIGDS---RKLIVDLQTVEFFAASGFAALFNVNVVCHRRGVRWQLLAG-PHVRR  116

Query  116  TIAACGLRRLIPL  128
             +  C  +R +P+
Sbjct  117  LLRVCDPQRELPV  129


>gi|342859087|ref|ZP_08715741.1| anti sigma factor antagonist [Mycobacterium colombiense CECT 
3035]
 gi|342133328|gb|EGT86531.1| anti sigma factor antagonist [Mycobacterium colombiense CECT 
3035]
Length=117

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 35/106 (34%), Positives = 51/106 (49%), Gaps = 2/106 (1%)

Query  33   ECTGSAVVVHVGGDIDASN--EVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVL  90
            E     V+V V GD+D+SN  E+A     +   A A    P VID++ +DF GS A   +
Sbjct  7    EAHDDVVIVSVKGDVDSSNVGELAAHLATALELASAQPIRPVVIDLQAVDFFGSAALNAV  66

Query  91   AQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETAL  136
                   +  G ++RLV++   V R I    L R+  +Y T   AL
Sbjct  67   LDCHEDAKAGGTSIRLVADHDQVLRPIQVTELDRVFDIYPTFAAAL  112


>gi|295837419|ref|ZP_06824352.1| anti-sigma-B factor antagonist [Streptomyces sp. SPB74]
 gi|302520921|ref|ZP_07273263.1| anti-sigma F factor antagonist [Streptomyces sp. SPB78]
 gi|318060831|ref|ZP_07979554.1| anti-sigma-factor antagonist [Streptomyces sp. SA3_actG]
 gi|333025382|ref|ZP_08453446.1| putative anti-sigma factor antagonist [Streptomyces sp. Tu6071]
 gi|197696065|gb|EDY42998.1| anti-sigma-B factor antagonist [Streptomyces sp. SPB74]
 gi|302429816|gb|EFL01632.1| anti-sigma F factor antagonist [Streptomyces sp. SPB78]
 gi|332745234|gb|EGJ75675.1| putative anti-sigma factor antagonist [Streptomyces sp. Tu6071]
Length=117

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 37/118 (32%), Positives = 56/118 (48%), Gaps = 8/118 (6%)

Query  23   DLHSGLRAVTECTGSAVVVHVGGDIDASNEVAW-QRLVSKSAAIAIAPGPF--VIDIRDL  79
            DL    R V+   G   VV VGG+ID        ++LV       +  G F  V+D+  +
Sbjct  2    DLSLSTRNVSGPGGDRTVVEVGGEIDVYTAPKLREQLVE-----LVNDGNFHLVVDMEGV  56

Query  80   DFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA  137
            DF+ S    VL     R R    ++RLV NQ  + +     GL ++ P++ +VE A+A
Sbjct  57   DFLDSTGLGVLVGGLKRVRAHEGSLRLVCNQERILKIFRITGLTKVFPIHTSVEEAVA  114


>gi|145225514|ref|YP_001136192.1| anti-sigma-factor antagonist [Mycobacterium gilvum PYR-GCK]
 gi|315445867|ref|YP_004078746.1| anti-anti-sigma factor [Mycobacterium sp. Spyr1]
 gi|145218000|gb|ABP47404.1| anti-sigma-factor antagonist [Mycobacterium gilvum PYR-GCK]
 gi|315264170|gb|ADU00912.1| anti-anti-sigma factor [Mycobacterium sp. Spyr1]
Length=125

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 32/108 (30%), Positives = 55/108 (51%), Gaps = 6/108 (5%)

Query  36   GSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGP--FVIDIRDLDFMGSCAYAVLAQE  93
            G  +V+HV GD+D    V     +S    IA+A  P   ++DI D+ F+ S    +L + 
Sbjct  22   GDLLVLHVTGDLD----VLTAPTLSTHLDIALADAPPVVIVDISDVSFLSSAGIGLLVET  77

Query  94   SVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPPPS  141
                 R G+++R+V++    +R +    +  +I LYAT + A A  P+
Sbjct  78   HRLTERGGISLRVVADGAATSRPLRMMRIDEVIDLYATTDEAKAGRPA  125


>gi|126433913|ref|YP_001069604.1| anti-sigma-factor antagonist [Mycobacterium sp. JLS]
 gi|126233713|gb|ABN97113.1| anti-sigma-factor antagonist [Mycobacterium sp. JLS]
Length=141

 Score = 48.9 bits (115),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 34/120 (29%), Positives = 59/120 (50%), Gaps = 6/120 (5%)

Query  17   PSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDI  76
            PS++P+  H+     +    S  VV V G++DA+N   +        A+  A G  ++D+
Sbjct  10   PSTEPTICHTARFEASAPLPSTTVVTVTGELDAANARDFADF-----ALLHAGGALIVDL  64

Query  77   RDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETAL  136
              ++F G+  ++ L   +VRC    +N  LV +   V+R +  C     +P   +VETAL
Sbjct  65   AGVEFFGTAGFSALHTLNVRCAGADINWILVPSA-AVSRLLRICDPDATLPWSESVETAL  123


>gi|317123693|ref|YP_004097805.1| anti-sigma-factor antagonist [Intrasporangium calvum DSM 43043]
 gi|315587781|gb|ADU47078.1| anti-sigma-factor antagonist [Intrasporangium calvum DSM 43043]
Length=127

 Score = 48.9 bits (115),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 29/104 (28%), Positives = 49/104 (48%), Gaps = 2/104 (1%)

Query  36   GSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMGSCAYAVLAQESV  95
            G   VVH+GG+ID       +  + +   I       ++D+ ++ F+ S    VL     
Sbjct  11   GDRTVVHLGGEIDVYTAPFVREKLDEQ--IHAGRADLIVDLSEVTFLDSTGLGVLVGRLK  68

Query  96   RCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALAPP  139
              R RG +++LV     V R  A  GL ++  ++  +E+ALA P
Sbjct  69   FARTRGGSLKLVGTSERVLRVFAITGLDKVFDIHPDLESALAAP  112


>gi|21221968|ref|NP_627747.1| anti-sigma factor antagonist [Streptomyces coelicolor A3(2)]
 gi|289770839|ref|ZP_06530217.1| anti-sigma-B factor antagonist [Streptomyces lividans TK24]
 gi|7227941|sp|Q9WVX8.1|RSBV_STRCO RecName: Full=Anti-sigma-B factor antagonist; AltName: Full=Anti-anti-sigma-B 
factor
 gi|4835880|gb|AAD30281.1|AF134889_1 putative anti-anti-sigma factor BldG [Streptomyces coelicolor]
 gi|4539567|emb|CAB38486.1| putative anti-sigma factor antagonist [Streptomyces coelicolor 
A3(2)]
 gi|289701038|gb|EFD68467.1| anti-sigma-B factor antagonist [Streptomyces lividans TK24]
Length=113

 Score = 48.9 bits (115),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 34/109 (32%), Positives = 52/109 (48%), Gaps = 8/109 (7%)

Query  32   TECTGSAVVVHVGGDIDASNEVAW-QRLVSKSAAIAIAPGPF--VIDIRDLDFMGSCAYA  88
            T   G   VV VGG+ID        ++LV       +  G F  V+D+  +DF+ S    
Sbjct  7    TRTVGDRTVVEVGGEIDVYTAPKLREQLVE-----LVNDGSFHLVVDMEGVDFLDSTGLG  61

Query  89   VLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA  137
            VL     R R    ++RLV NQ  + +     GL ++ P++ +VE A+A
Sbjct  62   VLVGGLKRVRAHEGSLRLVCNQERILKIFRITGLTKVFPIHTSVEEAVA  110


>gi|29831157|ref|NP_825791.1| anti-sigma factor antagonist [Streptomyces avermitilis MA-4680]
 gi|29608271|dbj|BAC72326.1| putative anti-sigma factor antagonist [Streptomyces avermitilis 
MA-4680]
Length=113

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 34/109 (32%), Positives = 52/109 (48%), Gaps = 8/109 (7%)

Query  32   TECTGSAVVVHVGGDIDASNEVAW-QRLVSKSAAIAIAPGPF--VIDIRDLDFMGSCAYA  88
            T   G   VV VGG+ID        ++LV       +  G F  V+D+  +DF+ S    
Sbjct  7    TRTVGDRTVVEVGGEIDVYTAPKLREQLVE-----LVNDGNFHLVVDMEGVDFLDSTGLG  61

Query  89   VLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA  137
            VL     R R    ++RLV NQ  + +     GL ++ P++ +VE A+A
Sbjct  62   VLVGGLKRVRAHEGSLRLVCNQERILKIFRITGLTKVFPIHTSVEEAVA  110


>gi|254525836|ref|ZP_05137888.1| anti-anti-sigma regulatory factor RsbV [Prochlorococcus marinus 
str. MIT 9202]
 gi|221537260|gb|EEE39713.1| anti-anti-sigma regulatory factor RsbV [Prochlorococcus marinus 
str. MIT 9202]
Length=140

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 31/113 (28%), Positives = 54/113 (48%), Gaps = 4/113 (3%)

Query  24   LHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFMG  83
            L   LR   E   + +V    G +DA +E  ++  V+ +    +   PFVID+  +DF+ 
Sbjct  27   LTVSLRGNLEVKTNIIVFTFKGQLDAFSEKQFKTFVTDNLKNEL---PFVIDLTKIDFLD  83

Query  84   SCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETAL  136
            S     L Q +  C++  +   +V N   VA+TI    L   + L ++++ AL
Sbjct  84   SSGLGALVQTAKECKKSKLGFSVVGNSR-VAQTIKLVRLGDFLNLKSSLDDAL  135


>gi|108798253|ref|YP_638450.1| anti-sigma-factor antagonist [Mycobacterium sp. MCS]
 gi|119867349|ref|YP_937301.1| anti-sigma-factor antagonist [Mycobacterium sp. KMS]
 gi|108768672|gb|ABG07394.1| anti-sigma-factor antagonist [Mycobacterium sp. MCS]
 gi|119693438|gb|ABL90511.1| anti-sigma-factor antagonist [Mycobacterium sp. KMS]
Length=141

 Score = 47.8 bits (112),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 33/120 (28%), Positives = 59/120 (50%), Gaps = 6/120 (5%)

Query  17   PSSQPSDLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDI  76
            PS++P+  H+     +    S  VV V G++DA+N   +        A+  A G  ++D+
Sbjct  10   PSTEPTICHTARFEASAPLPSTTVVTVAGELDAANARDFADF-----ALLHAGGALIVDL  64

Query  77   RDLDFMGSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETAL  136
              ++F G+  ++ L   +VRC    +N  LV +   V+R +  C     +P   +V+TAL
Sbjct  65   AGVEFFGTAGFSALHTLNVRCAGADINWILVPSA-AVSRLLRICDPDATLPWSESVDTAL  123


>gi|256376432|ref|YP_003100092.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
 gi|255920735|gb|ACU36246.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
Length=118

 Score = 47.8 bits (112),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 31/115 (27%), Positives = 53/115 (47%), Gaps = 0/115 (0%)

Query  23   DLHSGLRAVTECTGSAVVVHVGGDIDASNEVAWQRLVSKSAAIAIAPGPFVIDIRDLDFM  82
            DL   +   ++  G AVV+HV G+ID        R +  + A    P P V+D+ ++ F 
Sbjct  3    DLDEEMSVHSQECGGAVVLHVSGEIDQLTVEPLHRELLSALARVRPPEPVVVDLTEVGFF  62

Query  83   GSCAYAVLAQESVRCRRRGVNMRLVSNQPIVARTIAACGLRRLIPLYATVETALA  137
            GS     L    ++    G  + +V+    V R +A  GL   + ++ T++ AL 
Sbjct  63   GSAGLNELVTGHLQAELLGTRLSVVAGHREVLRPLAISGLDEQLDVHPTLQAALG  117



Lambda     K      H
   0.320    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129250525032


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40