BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1924c

Length=126
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841396|ref|NP_336433.1|  hypothetical protein MT1975 [Mycoba...   241    3e-62
gi|15609061|ref|NP_216440.1|  hypothetical protein Rv1924c [Mycob...   241    3e-62
gi|308369565|ref|ZP_07418270.2|  hypothetical protein TMBG_00460 ...   239    7e-62
gi|289447540|ref|ZP_06437284.1|  conserved hypothetical protein [...   237    5e-61
gi|240170176|ref|ZP_04748835.1|  hypothetical protein MkanA1_1274...   156    1e-36
gi|183982838|ref|YP_001851129.1|  hypothetical protein MMAR_2834 ...   137    5e-31
gi|226366265|ref|YP_002784048.1|  hypothetical protein ROP_68560 ...  39.7    0.13 
gi|291003250|ref|ZP_06561223.1|  hypothetical protein SeryN2_0184...  39.7    0.15 
gi|134098534|ref|YP_001104195.1|  hypothetical protein SACE_1960 ...  39.7    0.16 
gi|296269204|ref|YP_003651836.1|  hypothetical protein Tbis_1222 ...  39.3    0.17 
gi|296139626|ref|YP_003646869.1|  hypothetical protein Tpau_1917 ...  38.9    0.26 
gi|334564816|ref|ZP_08517807.1|  hypothetical protein CbovD2_0959...  38.9    0.29 
gi|227505252|ref|ZP_03935301.1|  conserved hypothetical protein [...  37.4    0.69 
gi|337290064|ref|YP_004629085.1|  hypothetical protein CULC22_004...  37.0    1.0  
gi|111023829|ref|YP_706801.1|  hypothetical protein RHA1_ro06877 ...  37.0    1.1  
gi|226306389|ref|YP_002766349.1|  hypothetical protein RER_29020 ...  35.0    3.9  
gi|343924343|ref|ZP_08763894.1|  hypothetical protein GOALK_014_0...  34.3    5.8  
gi|223937474|ref|ZP_03629378.1|  permease [bacterium Ellin514] >g...  33.9    9.0  


>gi|15841396|ref|NP_336433.1| hypothetical protein MT1975 [Mycobacterium tuberculosis CDC1551]
 gi|254232099|ref|ZP_04925426.1| hypothetical protein TBCG_01875 [Mycobacterium tuberculosis C]
 gi|308379079|ref|ZP_07484920.2| hypothetical protein TMJG_00171 [Mycobacterium tuberculosis SUMu010]
 gi|308402957|ref|ZP_07493659.2| hypothetical protein TMLG_01201 [Mycobacterium tuberculosis SUMu012]
 gi|13881632|gb|AAK46247.1| hypothetical protein MT1975 [Mycobacterium tuberculosis CDC1551]
 gi|124601158|gb|EAY60168.1| hypothetical protein TBCG_01875 [Mycobacterium tuberculosis C]
 gi|308358271|gb|EFP47122.1| hypothetical protein TMJG_00171 [Mycobacterium tuberculosis SUMu010]
 gi|308365851|gb|EFP54702.1| hypothetical protein TMLG_01201 [Mycobacterium tuberculosis SUMu012]
Length=156

 Score =  241 bits (614),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 126/126 (100%), Positives = 126/126 (100%), Gaps = 0/126 (0%)

Query  1    MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG  60
            MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG
Sbjct  31   MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG  90

Query  61   IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW  120
            IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW
Sbjct  91   IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW  150

Query  121  LLVYEF  126
            LLVYEF
Sbjct  151  LLVYEF  156


>gi|15609061|ref|NP_216440.1| hypothetical protein Rv1924c [Mycobacterium tuberculosis H37Rv]
 gi|31793116|ref|NP_855609.1| hypothetical protein Mb1959c [Mycobacterium bovis AF2122/97]
 gi|121637829|ref|YP_978052.1| hypothetical protein BCG_1963c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 54 more sequence titles
 Length=126

 Score =  241 bits (614),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 126/126 (100%), Positives = 126/126 (100%), Gaps = 0/126 (0%)

Query  1    MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG  60
            MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG
Sbjct  1    MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG  60

Query  61   IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW  120
            IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW
Sbjct  61   IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW  120

Query  121  LLVYEF  126
            LLVYEF
Sbjct  121  LLVYEF  126


>gi|308369565|ref|ZP_07418270.2| hypothetical protein TMBG_00460 [Mycobacterium tuberculosis SUMu002]
 gi|308370869|ref|ZP_07423005.2| hypothetical protein TMCG_00009 [Mycobacterium tuberculosis SUMu003]
 gi|308372095|ref|ZP_07427362.2| hypothetical protein TMDG_02746 [Mycobacterium tuberculosis SUMu004]
 13 more sequence titles
 Length=156

 Score =  239 bits (611),  Expect = 7e-62, Method: Compositional matrix adjust.
 Identities = 125/126 (99%), Positives = 126/126 (100%), Gaps = 0/126 (0%)

Query  1    MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG  60
            MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLA+VGGGLFVVSLPMIVLLPELG
Sbjct  31   MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAMVGGGLFVVSLPMIVLLPELG  90

Query  61   IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW  120
            IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW
Sbjct  91   IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW  150

Query  121  LLVYEF  126
            LLVYEF
Sbjct  151  LLVYEF  156


>gi|289447540|ref|ZP_06437284.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289420498|gb|EFD17699.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=126

 Score =  237 bits (604),  Expect = 5e-61, Method: Compositional matrix adjust.
 Identities = 125/126 (99%), Positives = 125/126 (99%), Gaps = 0/126 (0%)

Query  1    MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG  60
            MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG
Sbjct  1    MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG  60

Query  61   IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW  120
            IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLRE FHRQVLVTRAAILVGLFLAAVALVW
Sbjct  61   IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREGFHRQVLVTRAAILVGLFLAAVALVW  120

Query  121  LLVYEF  126
            LLVYEF
Sbjct  121  LLVYEF  126


>gi|240170176|ref|ZP_04748835.1| hypothetical protein MkanA1_12748 [Mycobacterium kansasii ATCC 
12478]
Length=127

 Score =  156 bits (394),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 81/126 (65%), Positives = 96/126 (77%), Gaps = 0/126 (0%)

Query  1    MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG  60
            MD AD    + TRD AL+RVL YR+R R RP+++RA LA++ G L + S+P+IVLLPELG
Sbjct  1    MDSADQRVLSVTRDEALSRVLVYRERGRTRPMVVRAPLAMLAGALVIASIPLIVLLPELG  60

Query  61   IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW  120
            IPALLVAFRLLAVEA WA RAYAWTDWRFTQ R W HRQ    +AA++ GL L A ALVW
Sbjct  61   IPALLVAFRLLAVEADWAARAYAWTDWRFTQARAWLHRQSGFVQAAVIGGLLLVAAALVW  120

Query  121  LLVYEF  126
            L+V E 
Sbjct  121  LVVDEL  126


>gi|183982838|ref|YP_001851129.1| hypothetical protein MMAR_2834 [Mycobacterium marinum M]
 gi|183176164|gb|ACC41274.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=140

 Score =  137 bits (345),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 64/104 (62%), Positives = 80/104 (77%), Gaps = 0/104 (0%)

Query  1    MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG  60
            +D  D     +TRDAA ARVLAYR R RA P+++R  LAV G  L + S+P++VLLPELG
Sbjct  15   VDSGDCNPAATTRDAAFARVLAYRDRARANPMVLRVLLAVFGAALLIASVPLMVLLPELG  74

Query  61   IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTR  104
            IPA+LVAFR+LA+E+ WA RAYAWTDWRF QLR+WFHR+  + R
Sbjct  75   IPAVLVAFRVLAIESDWAARAYAWTDWRFAQLRDWFHRKSAIVR  118


>gi|226366265|ref|YP_002784048.1| hypothetical protein ROP_68560 [Rhodococcus opacus B4]
 gi|226244755|dbj|BAH55103.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=141

 Score = 39.7 bits (91),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 38/124 (31%), Positives = 56/124 (46%), Gaps = 6/124 (4%)

Query  1    MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVG--GGLFVVSLPMIVLLPE  58
            MD +D+    S    A +R   +R  V ARP L  A   VVG  G L + +  + +  P 
Sbjct  1    MDDSDL----SPFQEAESRWRRWRAHVAARPGLNLAYRIVVGVIGALVLAAGIVAIPYPG  56

Query  59   LGIPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVAL  118
             G   +     +LA E  WA R   +   R+ +  +WF RQ LV + A  +      +A 
Sbjct  57   PGWLIVFAGLGILASEFAWAHRLLHYARQRYDKFMDWFSRQSLVVKGAGALLTCAVVLAT  116

Query  119  VWLL  122
            +WLL
Sbjct  117  LWLL  120


>gi|291003250|ref|ZP_06561223.1| hypothetical protein SeryN2_01844 [Saccharopolyspora erythraea 
NRRL 2338]
Length=136

 Score = 39.7 bits (91),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 36/110 (33%), Positives = 51/110 (47%), Gaps = 10/110 (9%)

Query  19   RVLAYRQRVRARPLL---IRATLAVVGGGLFVVSLPMIVLLPELGIPALLVAF---RLLA  72
            R+   R+ +R RP L    R TL   G    VV L  I ++P  G P  LV F    +LA
Sbjct  7    RLHHRRESIRERPTLNATYRITLGAFGA---VVLLAGIAMIPYPG-PGWLVVFAGLGILA  62

Query  73   VEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVWLL  122
             E  WA R   +    + +  +W  RQ L T+  ++    L  +A +WLL
Sbjct  63   TEFHWAHRVNLFAKRHYHRWADWLSRQHLATKLVVMGATGLIVLATLWLL  112


>gi|134098534|ref|YP_001104195.1| hypothetical protein SACE_1960 [Saccharopolyspora erythraea NRRL 
2338]
 gi|133911157|emb|CAM01270.1| hypothetical protein SACE_1960 [Saccharopolyspora erythraea NRRL 
2338]
Length=133

 Score = 39.7 bits (91),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 36/110 (33%), Positives = 51/110 (47%), Gaps = 10/110 (9%)

Query  19   RVLAYRQRVRARPLL---IRATLAVVGGGLFVVSLPMIVLLPELGIPALLVAF---RLLA  72
            R+   R+ +R RP L    R TL   G    VV L  I ++P  G P  LV F    +LA
Sbjct  4    RLHHRRESIRERPTLNATYRITLGAFGA---VVLLAGIAMIPYPG-PGWLVVFAGLGILA  59

Query  73   VEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVWLL  122
             E  WA R   +    + +  +W  RQ L T+  ++    L  +A +WLL
Sbjct  60   TEFHWAHRVNLFAKRHYHRWADWLSRQHLATKLVVMGATGLIVLATLWLL  109


>gi|296269204|ref|YP_003651836.1| hypothetical protein Tbis_1222 [Thermobispora bispora DSM 43833]
 gi|296091991|gb|ADG87943.1| hypothetical protein Tbis_1222 [Thermobispora bispora DSM 43833]
Length=154

 Score = 39.3 bits (90),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 34/119 (29%), Positives = 51/119 (43%), Gaps = 4/119 (3%)

Query  5    DVINPTSTRDAALARVLAYRQRVRARP---LLIRATLAVVGGGLFVVSLPMIVLLPELGI  61
            D      TR   L RV  +R R+RAR    + +R  + ++GG + V+   ++V  P  G 
Sbjct  10   DQKTRRDTRHGVLHRVRVWRDRIRARRTGRMTLRIAIGLLGG-IMVIGGLIMVPFPGPGW  68

Query  62   PALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW  120
              +     +LA E  WA R  A+   R     +W  RQ    R    +     A A+VW
Sbjct  69   LVVFAGLAVLATEFAWASRLLAFAKARVMAATDWLQRQNWFVRIVASLLTLTCAGAIVW  127


>gi|296139626|ref|YP_003646869.1| hypothetical protein Tpau_1917 [Tsukamurella paurometabola DSM 
20162]
 gi|296027760|gb|ADG78530.1| Protein of unknown function, PGPGW, transmembrane [Tsukamurella 
paurometabola DSM 20162]
Length=149

 Score = 38.9 bits (89),  Expect = 0.26, Method: Compositional matrix adjust.
 Identities = 34/120 (29%), Positives = 55/120 (46%), Gaps = 12/120 (10%)

Query  3    PADVINPTSTRDAALARVLAYRQRV---RARPLLIRATLAVVGGGLFVVSLPMIVLLPEL  59
            P    +  +   + LAR+  +R RV   R   L  R  + V+GG + +     I+ +P  
Sbjct  2    PDHDTDSGAGGGSPLARLHTWRDRVKSTRQGQLAWRIAVGVIGGAVLIAG---IIAIPYP  58

Query  60   GIPALLVAF---RLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAV  116
            G P  L+ F    +LA E +WA R   +   R+ +  EW  +Q +V +   L GL   A+
Sbjct  59   G-PGWLIVFAGLGILASEFEWAHRLLKFARARYDRFAEWLGKQNVVVKG--LFGLGTCAI  115


>gi|334564816|ref|ZP_08517807.1| hypothetical protein CbovD2_09593 [Corynebacterium bovis DSM 
20582]
Length=142

 Score = 38.9 bits (89),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 30/82 (37%), Positives = 40/82 (49%), Gaps = 8/82 (9%)

Query  24   RQRVRARPL-LIRATLAVVGGGLFVVSLPMIVLLPELGIPALLVAFRLLAVEAQWAVRAY  82
            R     RPL LI   L VVGG   +V++P     P  G   + V   +L++E +WA R  
Sbjct  26   RHGYLVRPLTLIVGWLVVVGG---IVTIPA----PGPGWVTVFVGVGILSLELRWAQRLL  78

Query  83   AWTDWRFTQLREWFHRQVLVTR  104
             W   R+    +WFHRQ   TR
Sbjct  79   EWGVARYDVFDDWFHRQSRGTR  100


>gi|227505252|ref|ZP_03935301.1| conserved hypothetical protein [Corynebacterium striatum ATCC 
6940]
 gi|227198151|gb|EEI78199.1| conserved hypothetical protein [Corynebacterium striatum ATCC 
6940]
Length=148

 Score = 37.4 bits (85),  Expect = 0.69, Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 6/100 (6%)

Query  11   STRDAALARVLAYRQR-VRARP----LLIRATLAVVGGGLFVVSLPMIVLLPELGIPALL  65
            + R+A   RV  +R R  R++      L+R     +G  + +V L + + LP  G     
Sbjct  3    TMREAVHERVENFRDRHSRSKEAKYGFLVRPLTLTLGWTILIVGL-ITIPLPGQGWLTTF  61

Query  66   VAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRA  105
            V   +L++E  WA     W   ++ +  +WF RQ + TRA
Sbjct  62   VGIGILSLEVHWARHLLEWGVHQYDRFFDWFGRQSMRTRA  101


>gi|337290064|ref|YP_004629085.1| hypothetical protein CULC22_00448 [Corynebacterium ulcerans BR-AD22]
 gi|334696187|gb|AEG80984.1| putative membrane protein [Corynebacterium ulcerans 809]
 gi|334698370|gb|AEG83166.1| putative membrane protein [Corynebacterium ulcerans BR-AD22]
Length=140

 Score = 37.0 bits (84),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 28/111 (26%), Positives = 52/111 (47%), Gaps = 6/111 (5%)

Query  10   TSTRDAALARVLAYRQRVRARP-----LLIRATLAVVGGGLFVVSLPMIVLLPELGIPAL  64
            +S RDA   ++    QR  +        L+R T+ ++G  + +V + + +  P  G   +
Sbjct  2    SSMRDAVADKLAHINQRHESLKRHRFGFLVRPTVLILGWLVVIVGI-ITIPFPGPGWLTV  60

Query  65   LVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAA  115
             V   +L++E  WA    AW    + +   W+H Q   TR +++ G  +AA
Sbjct  61   FVGIGILSLELHWASGLLAWGVRLYDRFFSWYHVQPKRTRYSLIAGTLVAA  111


>gi|111023829|ref|YP_706801.1| hypothetical protein RHA1_ro06877 [Rhodococcus jostii RHA1]
 gi|110823359|gb|ABG98643.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=157

 Score = 37.0 bits (84),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 33/114 (29%), Positives = 50/114 (44%), Gaps = 2/114 (1%)

Query  11   STRDAALARVLAYRQRVRARPLLIRATLAVVG--GGLFVVSLPMIVLLPELGIPALLVAF  68
            S    A +R   +R  + ARP L  A    VG  G L + +  + +  P  G   +    
Sbjct  23   SPFQEAESRWHRWRAHIAARPSLNLAYRIAVGVIGALVLAAGIVAIPYPGPGWLIVFAGL  82

Query  69   RLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVWLL  122
             +LA E  WA R   +   R+ +   WF RQ LV + A  +   +  +A +WLL
Sbjct  83   GILASEFAWAHRLLHYARQRYDKFMHWFSRQSLVVKGAGALLTCVIVLATLWLL  136


>gi|226306389|ref|YP_002766349.1| hypothetical protein RER_29020 [Rhodococcus erythropolis PR4]
 gi|226185506|dbj|BAH33610.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
Length=178

 Score = 35.0 bits (79),  Expect = 3.9, Method: Compositional matrix adjust.
 Identities = 37/127 (30%), Positives = 59/127 (47%), Gaps = 11/127 (8%)

Query  2    DPADVINPTSTRDAALARVLAYRQRVRARPLL---IRATLAVVGGGLFVVSLPMIVLLPE  58
             P D  + +  +DA  +R   +R  + ARP L    R  + VVG  +F      IV +P 
Sbjct  36   SPVDDSDLSVFQDAE-SRWERWRAGIAARPTLNLAYRIGVGVVGTIVFAAG---IVAIPY  91

Query  59   LGIPALLVAF---RLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAA  115
             G P  L+ F    +LA E  WA R   +   R+ +  EWF +Q L  +   ++   +  
Sbjct  92   PG-PGWLIVFAGLGILASEFAWAHRLLHFAKARYDRFMEWFGKQSLFVKGLGVLFTTVIV  150

Query  116  VALVWLL  122
            +A +W+L
Sbjct  151  LATLWVL  157


>gi|343924343|ref|ZP_08763894.1| hypothetical protein GOALK_014_00430 [Gordonia alkanivorans NBRC 
16433]
 gi|343765777|dbj|GAA10820.1| hypothetical protein GOALK_014_00430 [Gordonia alkanivorans NBRC 
16433]
Length=121

 Score = 34.3 bits (77),  Expect = 5.8, Method: Compositional matrix adjust.
 Identities = 31/93 (34%), Positives = 44/93 (48%), Gaps = 7/93 (7%)

Query  33   LIRATLAVVGGGLFVVSLPMIVLLPELGIPALLVAF---RLLAVEAQWAVRAYAWTDWRF  89
            + R  +AVVG    +V L  IV +P  G P  L+ F    +LA E +WA R   +   R+
Sbjct  10   IYRIGVAVVGT---IVLLCGIVAIPYPG-PGWLIVFLGLGILASEFEWAHRLLKFARARY  65

Query  90   TQLREWFHRQVLVTRAAILVGLFLAAVALVWLL  122
                EW  RQ    ++   +G F   V  +WLL
Sbjct  66   DAWMEWIGRQHWSVQSVFWIGTFAIVVGTLWLL  98


>gi|223937474|ref|ZP_03629378.1| permease [bacterium Ellin514]
 gi|223893825|gb|EEF60282.1| permease [bacterium Ellin514]
Length=881

 Score = 33.9 bits (76),  Expect = 9.0, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 31/59 (53%), Gaps = 5/59 (8%)

Query  24   RQRVRARPLLIRATLAV-----VGGGLFVVSLPMIVLLPELGIPALLVAFRLLAVEAQW  77
            RQR R R LLI + LAV     VG GL + S   +  +P    PA L+ FRL   E ++
Sbjct  486  RQRQRLRSLLIVSELAVAIMLLVGAGLLLKSFTQVQKVPPGFKPAHLLTFRLFLPEHEY  544



Lambda     K      H
   0.333    0.142    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129836892488


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40