BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1924c Length=126 Score E Sequences producing significant alignments: (Bits) Value gi|15841396|ref|NP_336433.1| hypothetical protein MT1975 [Mycoba... 241 3e-62 gi|15609061|ref|NP_216440.1| hypothetical protein Rv1924c [Mycob... 241 3e-62 gi|308369565|ref|ZP_07418270.2| hypothetical protein TMBG_00460 ... 239 7e-62 gi|289447540|ref|ZP_06437284.1| conserved hypothetical protein [... 237 5e-61 gi|240170176|ref|ZP_04748835.1| hypothetical protein MkanA1_1274... 156 1e-36 gi|183982838|ref|YP_001851129.1| hypothetical protein MMAR_2834 ... 137 5e-31 gi|226366265|ref|YP_002784048.1| hypothetical protein ROP_68560 ... 39.7 0.13 gi|291003250|ref|ZP_06561223.1| hypothetical protein SeryN2_0184... 39.7 0.15 gi|134098534|ref|YP_001104195.1| hypothetical protein SACE_1960 ... 39.7 0.16 gi|296269204|ref|YP_003651836.1| hypothetical protein Tbis_1222 ... 39.3 0.17 gi|296139626|ref|YP_003646869.1| hypothetical protein Tpau_1917 ... 38.9 0.26 gi|334564816|ref|ZP_08517807.1| hypothetical protein CbovD2_0959... 38.9 0.29 gi|227505252|ref|ZP_03935301.1| conserved hypothetical protein [... 37.4 0.69 gi|337290064|ref|YP_004629085.1| hypothetical protein CULC22_004... 37.0 1.0 gi|111023829|ref|YP_706801.1| hypothetical protein RHA1_ro06877 ... 37.0 1.1 gi|226306389|ref|YP_002766349.1| hypothetical protein RER_29020 ... 35.0 3.9 gi|343924343|ref|ZP_08763894.1| hypothetical protein GOALK_014_0... 34.3 5.8 gi|223937474|ref|ZP_03629378.1| permease [bacterium Ellin514] >g... 33.9 9.0 >gi|15841396|ref|NP_336433.1| hypothetical protein MT1975 [Mycobacterium tuberculosis CDC1551] gi|254232099|ref|ZP_04925426.1| hypothetical protein TBCG_01875 [Mycobacterium tuberculosis C] gi|308379079|ref|ZP_07484920.2| hypothetical protein TMJG_00171 [Mycobacterium tuberculosis SUMu010] gi|308402957|ref|ZP_07493659.2| hypothetical protein TMLG_01201 [Mycobacterium tuberculosis SUMu012] gi|13881632|gb|AAK46247.1| hypothetical protein MT1975 [Mycobacterium tuberculosis CDC1551] gi|124601158|gb|EAY60168.1| hypothetical protein TBCG_01875 [Mycobacterium tuberculosis C] gi|308358271|gb|EFP47122.1| hypothetical protein TMJG_00171 [Mycobacterium tuberculosis SUMu010] gi|308365851|gb|EFP54702.1| hypothetical protein TMLG_01201 [Mycobacterium tuberculosis SUMu012] Length=156 Score = 241 bits (614), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 126/126 (100%), Positives = 126/126 (100%), Gaps = 0/126 (0%) Query 1 MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG 60 MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG Sbjct 31 MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG 90 Query 61 IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW 120 IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW Sbjct 91 IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW 150 Query 121 LLVYEF 126 LLVYEF Sbjct 151 LLVYEF 156 >gi|15609061|ref|NP_216440.1| hypothetical protein Rv1924c [Mycobacterium tuberculosis H37Rv] gi|31793116|ref|NP_855609.1| hypothetical protein Mb1959c [Mycobacterium bovis AF2122/97] gi|121637829|ref|YP_978052.1| hypothetical protein BCG_1963c [Mycobacterium bovis BCG str. Pasteur 1173P2] 54 more sequence titlesLength=126 Score = 241 bits (614), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 126/126 (100%), Positives = 126/126 (100%), Gaps = 0/126 (0%) Query 1 MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG 60 MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG Sbjct 1 MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG 60 Query 61 IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW 120 IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW Sbjct 61 IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW 120 Query 121 LLVYEF 126 LLVYEF Sbjct 121 LLVYEF 126 >gi|308369565|ref|ZP_07418270.2| hypothetical protein TMBG_00460 [Mycobacterium tuberculosis SUMu002] gi|308370869|ref|ZP_07423005.2| hypothetical protein TMCG_00009 [Mycobacterium tuberculosis SUMu003] gi|308372095|ref|ZP_07427362.2| hypothetical protein TMDG_02746 [Mycobacterium tuberculosis SUMu004] 13 more sequence titles Length=156 Score = 239 bits (611), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 125/126 (99%), Positives = 126/126 (100%), Gaps = 0/126 (0%) Query 1 MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG 60 MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLA+VGGGLFVVSLPMIVLLPELG Sbjct 31 MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAMVGGGLFVVSLPMIVLLPELG 90 Query 61 IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW 120 IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW Sbjct 91 IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW 150 Query 121 LLVYEF 126 LLVYEF Sbjct 151 LLVYEF 156 >gi|289447540|ref|ZP_06437284.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289420498|gb|EFD17699.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] Length=126 Score = 237 bits (604), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 125/126 (99%), Positives = 125/126 (99%), Gaps = 0/126 (0%) Query 1 MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG 60 MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG Sbjct 1 MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG 60 Query 61 IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW 120 IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLRE FHRQVLVTRAAILVGLFLAAVALVW Sbjct 61 IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREGFHRQVLVTRAAILVGLFLAAVALVW 120 Query 121 LLVYEF 126 LLVYEF Sbjct 121 LLVYEF 126 >gi|240170176|ref|ZP_04748835.1| hypothetical protein MkanA1_12748 [Mycobacterium kansasii ATCC 12478] Length=127 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 81/126 (65%), Positives = 96/126 (77%), Gaps = 0/126 (0%) Query 1 MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG 60 MD AD + TRD AL+RVL YR+R R RP+++RA LA++ G L + S+P+IVLLPELG Sbjct 1 MDSADQRVLSVTRDEALSRVLVYRERGRTRPMVVRAPLAMLAGALVIASIPLIVLLPELG 60 Query 61 IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW 120 IPALLVAFRLLAVEA WA RAYAWTDWRFTQ R W HRQ +AA++ GL L A ALVW Sbjct 61 IPALLVAFRLLAVEADWAARAYAWTDWRFTQARAWLHRQSGFVQAAVIGGLLLVAAALVW 120 Query 121 LLVYEF 126 L+V E Sbjct 121 LVVDEL 126 >gi|183982838|ref|YP_001851129.1| hypothetical protein MMAR_2834 [Mycobacterium marinum M] gi|183176164|gb|ACC41274.1| conserved hypothetical protein [Mycobacterium marinum M] Length=140 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 64/104 (62%), Positives = 80/104 (77%), Gaps = 0/104 (0%) Query 1 MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVGGGLFVVSLPMIVLLPELG 60 +D D +TRDAA ARVLAYR R RA P+++R LAV G L + S+P++VLLPELG Sbjct 15 VDSGDCNPAATTRDAAFARVLAYRDRARANPMVLRVLLAVFGAALLIASVPLMVLLPELG 74 Query 61 IPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTR 104 IPA+LVAFR+LA+E+ WA RAYAWTDWRF QLR+WFHR+ + R Sbjct 75 IPAVLVAFRVLAIESDWAARAYAWTDWRFAQLRDWFHRKSAIVR 118 >gi|226366265|ref|YP_002784048.1| hypothetical protein ROP_68560 [Rhodococcus opacus B4] gi|226244755|dbj|BAH55103.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=141 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 38/124 (31%), Positives = 56/124 (46%), Gaps = 6/124 (4%) Query 1 MDPADVINPTSTRDAALARVLAYRQRVRARPLLIRATLAVVG--GGLFVVSLPMIVLLPE 58 MD +D+ S A +R +R V ARP L A VVG G L + + + + P Sbjct 1 MDDSDL----SPFQEAESRWRRWRAHVAARPGLNLAYRIVVGVIGALVLAAGIVAIPYPG 56 Query 59 LGIPALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVAL 118 G + +LA E WA R + R+ + +WF RQ LV + A + +A Sbjct 57 PGWLIVFAGLGILASEFAWAHRLLHYARQRYDKFMDWFSRQSLVVKGAGALLTCAVVLAT 116 Query 119 VWLL 122 +WLL Sbjct 117 LWLL 120 >gi|291003250|ref|ZP_06561223.1| hypothetical protein SeryN2_01844 [Saccharopolyspora erythraea NRRL 2338] Length=136 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 36/110 (33%), Positives = 51/110 (47%), Gaps = 10/110 (9%) Query 19 RVLAYRQRVRARPLL---IRATLAVVGGGLFVVSLPMIVLLPELGIPALLVAF---RLLA 72 R+ R+ +R RP L R TL G VV L I ++P G P LV F +LA Sbjct 7 RLHHRRESIRERPTLNATYRITLGAFGA---VVLLAGIAMIPYPG-PGWLVVFAGLGILA 62 Query 73 VEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVWLL 122 E WA R + + + +W RQ L T+ ++ L +A +WLL Sbjct 63 TEFHWAHRVNLFAKRHYHRWADWLSRQHLATKLVVMGATGLIVLATLWLL 112 >gi|134098534|ref|YP_001104195.1| hypothetical protein SACE_1960 [Saccharopolyspora erythraea NRRL 2338] gi|133911157|emb|CAM01270.1| hypothetical protein SACE_1960 [Saccharopolyspora erythraea NRRL 2338] Length=133 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 36/110 (33%), Positives = 51/110 (47%), Gaps = 10/110 (9%) Query 19 RVLAYRQRVRARPLL---IRATLAVVGGGLFVVSLPMIVLLPELGIPALLVAF---RLLA 72 R+ R+ +R RP L R TL G VV L I ++P G P LV F +LA Sbjct 4 RLHHRRESIRERPTLNATYRITLGAFGA---VVLLAGIAMIPYPG-PGWLVVFAGLGILA 59 Query 73 VEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVWLL 122 E WA R + + + +W RQ L T+ ++ L +A +WLL Sbjct 60 TEFHWAHRVNLFAKRHYHRWADWLSRQHLATKLVVMGATGLIVLATLWLL 109 >gi|296269204|ref|YP_003651836.1| hypothetical protein Tbis_1222 [Thermobispora bispora DSM 43833] gi|296091991|gb|ADG87943.1| hypothetical protein Tbis_1222 [Thermobispora bispora DSM 43833] Length=154 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 34/119 (29%), Positives = 51/119 (43%), Gaps = 4/119 (3%) Query 5 DVINPTSTRDAALARVLAYRQRVRARP---LLIRATLAVVGGGLFVVSLPMIVLLPELGI 61 D TR L RV +R R+RAR + +R + ++GG + V+ ++V P G Sbjct 10 DQKTRRDTRHGVLHRVRVWRDRIRARRTGRMTLRIAIGLLGG-IMVIGGLIMVPFPGPGW 68 Query 62 PALLVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVW 120 + +LA E WA R A+ R +W RQ R + A A+VW Sbjct 69 LVVFAGLAVLATEFAWASRLLAFAKARVMAATDWLQRQNWFVRIVASLLTLTCAGAIVW 127 >gi|296139626|ref|YP_003646869.1| hypothetical protein Tpau_1917 [Tsukamurella paurometabola DSM 20162] gi|296027760|gb|ADG78530.1| Protein of unknown function, PGPGW, transmembrane [Tsukamurella paurometabola DSM 20162] Length=149 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 34/120 (29%), Positives = 55/120 (46%), Gaps = 12/120 (10%) Query 3 PADVINPTSTRDAALARVLAYRQRV---RARPLLIRATLAVVGGGLFVVSLPMIVLLPEL 59 P + + + LAR+ +R RV R L R + V+GG + + I+ +P Sbjct 2 PDHDTDSGAGGGSPLARLHTWRDRVKSTRQGQLAWRIAVGVIGGAVLIAG---IIAIPYP 58 Query 60 GIPALLVAF---RLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAV 116 G P L+ F +LA E +WA R + R+ + EW +Q +V + L GL A+ Sbjct 59 G-PGWLIVFAGLGILASEFEWAHRLLKFARARYDRFAEWLGKQNVVVKG--LFGLGTCAI 115 >gi|334564816|ref|ZP_08517807.1| hypothetical protein CbovD2_09593 [Corynebacterium bovis DSM 20582] Length=142 Score = 38.9 bits (89), Expect = 0.29, Method: Compositional matrix adjust. Identities = 30/82 (37%), Positives = 40/82 (49%), Gaps = 8/82 (9%) Query 24 RQRVRARPL-LIRATLAVVGGGLFVVSLPMIVLLPELGIPALLVAFRLLAVEAQWAVRAY 82 R RPL LI L VVGG +V++P P G + V +L++E +WA R Sbjct 26 RHGYLVRPLTLIVGWLVVVGG---IVTIPA----PGPGWVTVFVGVGILSLELRWAQRLL 78 Query 83 AWTDWRFTQLREWFHRQVLVTR 104 W R+ +WFHRQ TR Sbjct 79 EWGVARYDVFDDWFHRQSRGTR 100 >gi|227505252|ref|ZP_03935301.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] gi|227198151|gb|EEI78199.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] Length=148 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 6/100 (6%) Query 11 STRDAALARVLAYRQR-VRARP----LLIRATLAVVGGGLFVVSLPMIVLLPELGIPALL 65 + R+A RV +R R R++ L+R +G + +V L + + LP G Sbjct 3 TMREAVHERVENFRDRHSRSKEAKYGFLVRPLTLTLGWTILIVGL-ITIPLPGQGWLTTF 61 Query 66 VAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRA 105 V +L++E WA W ++ + +WF RQ + TRA Sbjct 62 VGIGILSLEVHWARHLLEWGVHQYDRFFDWFGRQSMRTRA 101 >gi|337290064|ref|YP_004629085.1| hypothetical protein CULC22_00448 [Corynebacterium ulcerans BR-AD22] gi|334696187|gb|AEG80984.1| putative membrane protein [Corynebacterium ulcerans 809] gi|334698370|gb|AEG83166.1| putative membrane protein [Corynebacterium ulcerans BR-AD22] Length=140 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/111 (26%), Positives = 52/111 (47%), Gaps = 6/111 (5%) Query 10 TSTRDAALARVLAYRQRVRARP-----LLIRATLAVVGGGLFVVSLPMIVLLPELGIPAL 64 +S RDA ++ QR + L+R T+ ++G + +V + + + P G + Sbjct 2 SSMRDAVADKLAHINQRHESLKRHRFGFLVRPTVLILGWLVVIVGI-ITIPFPGPGWLTV 60 Query 65 LVAFRLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAA 115 V +L++E WA AW + + W+H Q TR +++ G +AA Sbjct 61 FVGIGILSLELHWASGLLAWGVRLYDRFFSWYHVQPKRTRYSLIAGTLVAA 111 >gi|111023829|ref|YP_706801.1| hypothetical protein RHA1_ro06877 [Rhodococcus jostii RHA1] gi|110823359|gb|ABG98643.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=157 Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/114 (29%), Positives = 50/114 (44%), Gaps = 2/114 (1%) Query 11 STRDAALARVLAYRQRVRARPLLIRATLAVVG--GGLFVVSLPMIVLLPELGIPALLVAF 68 S A +R +R + ARP L A VG G L + + + + P G + Sbjct 23 SPFQEAESRWHRWRAHIAARPSLNLAYRIAVGVIGALVLAAGIVAIPYPGPGWLIVFAGL 82 Query 69 RLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAAVALVWLL 122 +LA E WA R + R+ + WF RQ LV + A + + +A +WLL Sbjct 83 GILASEFAWAHRLLHYARQRYDKFMHWFSRQSLVVKGAGALLTCVIVLATLWLL 136 >gi|226306389|ref|YP_002766349.1| hypothetical protein RER_29020 [Rhodococcus erythropolis PR4] gi|226185506|dbj|BAH33610.1| hypothetical membrane protein [Rhodococcus erythropolis PR4] Length=178 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 37/127 (30%), Positives = 59/127 (47%), Gaps = 11/127 (8%) Query 2 DPADVINPTSTRDAALARVLAYRQRVRARPLL---IRATLAVVGGGLFVVSLPMIVLLPE 58 P D + + +DA +R +R + ARP L R + VVG +F IV +P Sbjct 36 SPVDDSDLSVFQDAE-SRWERWRAGIAARPTLNLAYRIGVGVVGTIVFAAG---IVAIPY 91 Query 59 LGIPALLVAF---RLLAVEAQWAVRAYAWTDWRFTQLREWFHRQVLVTRAAILVGLFLAA 115 G P L+ F +LA E WA R + R+ + EWF +Q L + ++ + Sbjct 92 PG-PGWLIVFAGLGILASEFAWAHRLLHFAKARYDRFMEWFGKQSLFVKGLGVLFTTVIV 150 Query 116 VALVWLL 122 +A +W+L Sbjct 151 LATLWVL 157 >gi|343924343|ref|ZP_08763894.1| hypothetical protein GOALK_014_00430 [Gordonia alkanivorans NBRC 16433] gi|343765777|dbj|GAA10820.1| hypothetical protein GOALK_014_00430 [Gordonia alkanivorans NBRC 16433] Length=121 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 31/93 (34%), Positives = 44/93 (48%), Gaps = 7/93 (7%) Query 33 LIRATLAVVGGGLFVVSLPMIVLLPELGIPALLVAF---RLLAVEAQWAVRAYAWTDWRF 89 + R +AVVG +V L IV +P G P L+ F +LA E +WA R + R+ Sbjct 10 IYRIGVAVVGT---IVLLCGIVAIPYPG-PGWLIVFLGLGILASEFEWAHRLLKFARARY 65 Query 90 TQLREWFHRQVLVTRAAILVGLFLAAVALVWLL 122 EW RQ ++ +G F V +WLL Sbjct 66 DAWMEWIGRQHWSVQSVFWIGTFAIVVGTLWLL 98 >gi|223937474|ref|ZP_03629378.1| permease [bacterium Ellin514] gi|223893825|gb|EEF60282.1| permease [bacterium Ellin514] Length=881 Score = 33.9 bits (76), Expect = 9.0, Method: Compositional matrix adjust. Identities = 24/59 (41%), Positives = 31/59 (53%), Gaps = 5/59 (8%) Query 24 RQRVRARPLLIRATLAV-----VGGGLFVVSLPMIVLLPELGIPALLVAFRLLAVEAQW 77 RQR R R LLI + LAV VG GL + S + +P PA L+ FRL E ++ Sbjct 486 RQRQRLRSLLIVSELAVAIMLLVGAGLLLKSFTQVQKVPPGFKPAHLLTFRLFLPEHEY 544 Lambda K H 0.333 0.142 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129836892488 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40