BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1930c Length=174 Score E Sequences producing significant alignments: (Bits) Value gi|15609067|ref|NP_216446.1| hypothetical protein Rv1930c [Mycob... 348 2e-94 gi|289754026|ref|ZP_06513404.1| conserved hypothetical protein [... 345 2e-93 gi|240170189|ref|ZP_04748848.1| hypothetical protein MkanA1_1281... 215 2e-54 gi|339298488|gb|AEJ50598.1| hypothetical protein CCDC5180_1761 [... 213 6e-54 gi|296164961|ref|ZP_06847516.1| ThiJ/PfpI domain protein [Mycoba... 207 5e-52 gi|183982858|ref|YP_001851149.1| hypothetical protein MMAR_2854 ... 199 1e-49 gi|254820892|ref|ZP_05225893.1| hypothetical protein MintA_13240... 191 5e-47 gi|342859582|ref|ZP_08716235.1| hypothetical protein MCOL_11903 ... 184 4e-45 gi|120401988|ref|YP_951817.1| ThiJ/PfpI domain-containing protei... 167 7e-40 gi|118463154|ref|YP_881961.1| DJ-1/PfpI family protein [Mycobact... 166 8e-40 gi|41407749|ref|NP_960585.1| hypothetical protein MAP1651c [Myco... 166 9e-40 gi|333988867|ref|YP_004521481.1| hypothetical protein JDM601_022... 162 2e-38 gi|118471850|ref|YP_885501.1| isonitrile hydratase [Mycobacteriu... 158 2e-37 gi|296140203|ref|YP_003647446.1| ThiJ/PfpI domain-containing pro... 157 7e-37 gi|145225840|ref|YP_001136518.1| ThiJ/PfpI domain-containing pro... 155 3e-36 gi|262204278|ref|YP_003275486.1| thiJ/PfpI domain-containing pro... 145 2e-33 gi|169628040|ref|YP_001701689.1| hypothetical protein MAB_0943 [... 141 4e-32 gi|343924457|ref|ZP_08764006.1| putative ThiJ/PfpI family protei... 138 3e-31 gi|108797727|ref|YP_637924.1| ThiJ/PfpI [Mycobacterium sp. MCS] ... 135 2e-30 gi|126433353|ref|YP_001069044.1| ThiJ/PfpI domain-containing pro... 135 3e-30 gi|317506888|ref|ZP_07964660.1| DJ-1/PfpI family protein [Segnil... 132 2e-29 gi|169629984|ref|YP_001703633.1| hypothetical protein MAB_2900 [... 119 2e-25 gi|333919956|ref|YP_004493537.1| ThiJ/PfpI domain-containing pro... 119 2e-25 gi|305666798|ref|YP_003863085.1| putative 4-methyl-5(B-hydroxyet... 103 6e-21 gi|149924861|ref|ZP_01913198.1| ThiJ/PfpI [Plesiocystis pacifica... 103 7e-21 gi|256377246|ref|YP_003100906.1| ThiJ/PfpI domain-containing pro... 103 1e-20 gi|339007797|ref|ZP_08640371.1| putative 4-methyl-5(B-hydroxyeth... 100 7e-20 gi|302759951|ref|XP_002963398.1| hypothetical protein SELMODRAFT... 99.0 2e-19 gi|302785824|ref|XP_002974683.1| hypothetical protein SELMODRAFT... 99.0 3e-19 gi|317130619|ref|YP_004096901.1| ThiJ/PfpI domain-containing pro... 98.6 3e-19 gi|54027017|ref|YP_121259.1| hypothetical protein nfa50430 [Noca... 97.1 8e-19 gi|284047113|ref|YP_003397453.1| ThiJ/PfpI domain protein [Conex... 96.3 1e-18 gi|331695010|ref|YP_004331249.1| ThiJ/PfpI domain-containing pro... 95.9 2e-18 gi|229097452|ref|ZP_04228413.1| 4-methyl-5(B-hydroxyethyl)-thiaz... 95.1 3e-18 gi|238026799|ref|YP_002911030.1| DJ-1/PfpI family protein [Burkh... 95.1 4e-18 gi|83944848|ref|ZP_00957214.1| ThiJ/PfpI family protein [Oceanic... 94.7 4e-18 gi|333023223|ref|ZP_08451287.1| putative 4-methyl-5(B-hydroxyeth... 94.4 5e-18 gi|302522937|ref|ZP_07275279.1| 4-methyl-5(B-hydroxyethyl)-thiaz... 94.4 5e-18 gi|312197660|ref|YP_004017721.1| ThiJ/PfpI domain-containing pro... 94.4 6e-18 gi|46204064|ref|ZP_00209240.1| COG0693: Putative intracellular p... 94.4 6e-18 gi|302765010|ref|XP_002965926.1| hypothetical protein SELMODRAFT... 93.6 9e-18 gi|290963231|ref|YP_003494413.1| hypothetical protein SCAB_89551... 93.6 9e-18 gi|29828208|ref|NP_822842.1| 4-methyl-5(B-hydroxyethyl)-thiazole... 93.2 1e-17 gi|302769864|ref|XP_002968351.1| hypothetical protein SELMODRAFT... 93.2 1e-17 gi|291435825|ref|ZP_06575215.1| 4-methyl-5(B-hydroxyethyl)-thiaz... 92.8 2e-17 gi|289767688|ref|ZP_06527066.1| 4-methyl-5(B-hydroxyethyl)-thiaz... 92.8 2e-17 gi|330816283|ref|YP_004359988.1| DJ-1/PfpI family protein [Burkh... 92.4 2e-17 gi|284043704|ref|YP_003394044.1| ThiJ/PfpI domain protein [Conex... 92.4 2e-17 gi|168032228|ref|XP_001768621.1| predicted protein [Physcomitrel... 92.4 2e-17 gi|302765006|ref|XP_002965924.1| hypothetical protein SELMODRAFT... 92.4 2e-17 >gi|15609067|ref|NP_216446.1| hypothetical protein Rv1930c [Mycobacterium tuberculosis H37Rv] gi|15841401|ref|NP_336438.1| hypothetical protein MT1980.2 [Mycobacterium tuberculosis CDC1551] gi|31793122|ref|NP_855615.1| hypothetical protein Mb1965c [Mycobacterium bovis AF2122/97] 78 more sequence titles Length=174 Score = 348 bits (892), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 174/174 (100%), Positives = 174/174 (100%), Gaps = 0/174 (0%) Query 1 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVWLRGRRATSHWLTLPALKAFGAIPV 60 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVWLRGRRATSHWLTLPALKAFGAIPV Sbjct 1 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVWLRGRRATSHWLTLPALKAFGAIPV 60 Query 61 ADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEARAKAIQLAIEYDPQPPFDSGHMSKA 120 ADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEARAKAIQLAIEYDPQPPFDSGHMSKA Sbjct 61 ADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEARAKAIQLAIEYDPQPPFDSGHMSKA 120 Query 121 SPTTKAAATALLSKDSAKPANLTAATLLAWERALAAVQSRRRKRQPVGAQARRP 174 SPTTKAAATALLSKDSAKPANLTAATLLAWERALAAVQSRRRKRQPVGAQARRP Sbjct 121 SPTTKAAATALLSKDSAKPANLTAATLLAWERALAAVQSRRRKRQPVGAQARRP 174 >gi|289754026|ref|ZP_06513404.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289694613|gb|EFD62042.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] Length=174 Score = 345 bits (885), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 173/174 (99%), Positives = 173/174 (99%), Gaps = 0/174 (0%) Query 1 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVWLRGRRATSHWLTLPALKAFGAIPV 60 MTQIAFVAYPGVTA DVVGPYEVLRNLPHAQVRFVWLRGRRATSHWLTLPALKAFGAIPV Sbjct 1 MTQIAFVAYPGVTARDVVGPYEVLRNLPHAQVRFVWLRGRRATSHWLTLPALKAFGAIPV 60 Query 61 ADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEARAKAIQLAIEYDPQPPFDSGHMSKA 120 ADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEARAKAIQLAIEYDPQPPFDSGHMSKA Sbjct 61 ADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEARAKAIQLAIEYDPQPPFDSGHMSKA 120 Query 121 SPTTKAAATALLSKDSAKPANLTAATLLAWERALAAVQSRRRKRQPVGAQARRP 174 SPTTKAAATALLSKDSAKPANLTAATLLAWERALAAVQSRRRKRQPVGAQARRP Sbjct 121 SPTTKAAATALLSKDSAKPANLTAATLLAWERALAAVQSRRRKRQPVGAQARRP 174 >gi|240170189|ref|ZP_04748848.1| hypothetical protein MkanA1_12813 [Mycobacterium kansasii ATCC 12478] Length=261 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 112/130 (87%), Positives = 122/130 (94%), Gaps = 0/130 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L+ RRATSHWLTLPALKAFGAIPVADERIV QDN++TSAGVSAGLDLALWLAG++GGE R Sbjct 113 LKDRRATSHWLTLPALKAFGAIPVADERIVRQDNVITSAGVSAGLDLALWLAGEIGGEGR 172 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANLTAATLLAWERALAA 156 AKAIQLAIEYDPQPPFDSGHMSKAS TTKAAATALLSKDS KPANLTA T+LAW++ L A Sbjct 173 AKAIQLAIEYDPQPPFDSGHMSKASVTTKAAATALLSKDSVKPANLTATTMLAWQQTLTA 232 Query 157 VQSRRRKRQP 166 V+SRRR+RQP Sbjct 233 VRSRRRRRQP 242 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 30/36 (84%), Positives = 33/36 (92%), Gaps = 0/36 (0%) Query 1 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVW 36 MTQIA V YPG TALD++GPYEVLRNLPHA+VRFVW Sbjct 1 MTQIAIVTYPGFTALDMIGPYEVLRNLPHAEVRFVW 36 >gi|339298488|gb|AEJ50598.1| hypothetical protein CCDC5180_1761 [Mycobacterium tuberculosis CCDC5180] Length=109 Score = 213 bits (543), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 108/109 (99%), Positives = 109/109 (100%), Gaps = 0/109 (0%) Query 66 VHQDNIVTSAGVSAGLDLALWLAGQLGGEARAKAIQLAIEYDPQPPFDSGHMSKASPTTK 125 +HQDNIVTSAGVSAGLDLALWLAGQLGGEARAKAIQLAIEYDPQPPFDSGHMSKASPTTK Sbjct 1 MHQDNIVTSAGVSAGLDLALWLAGQLGGEARAKAIQLAIEYDPQPPFDSGHMSKASPTTK 60 Query 126 AAATALLSKDSAKPANLTAATLLAWERALAAVQSRRRKRQPVGAQARRP 174 AAATALLSKDSAKPANLTAATLLAWERALAAVQSRRRKRQPVGAQARRP Sbjct 61 AAATALLSKDSAKPANLTAATLLAWERALAAVQSRRRKRQPVGAQARRP 109 >gi|296164961|ref|ZP_06847516.1| ThiJ/PfpI domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899609|gb|EFG79060.1| ThiJ/PfpI domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=247 Score = 207 bits (527), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 113/130 (87%), Positives = 123/130 (95%), Gaps = 0/130 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L GRRATSHWLT+PALKAFGA+PVADER+VH+D+IVTSAGVSAGLDLA WLAGQ+GGE R Sbjct 113 LDGRRATSHWLTIPALKAFGAVPVADERVVHEDDIVTSAGVSAGLDLAFWLAGQIGGENR 172 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANLTAATLLAWERALAA 156 AKAIQLA+EYDPQPPFDSGHMSKAS TTKAAATALLSK+S KPANL AATLLAWE+ALAA Sbjct 173 AKAIQLALEYDPQPPFDSGHMSKASATTKAAATALLSKESVKPANLKAATLLAWEQALAA 232 Query 157 VQSRRRKRQP 166 V+SRRR RQP Sbjct 233 VRSRRRGRQP 242 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 29/36 (81%), Positives = 32/36 (89%), Gaps = 0/36 (0%) Query 1 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVW 36 MTQIA V YPG TALD++GPYEVLRNLP A+VRFVW Sbjct 1 MTQIAIVTYPGFTALDMIGPYEVLRNLPDAEVRFVW 36 >gi|183982858|ref|YP_001851149.1| hypothetical protein MMAR_2854 [Mycobacterium marinum M] gi|183176184|gb|ACC41294.1| conserved hypothetical protein [Mycobacterium marinum M] Length=247 Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 97/114 (86%), Positives = 106/114 (93%), Gaps = 0/114 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L+ RRATSHWLT+PALKAFGAIPVAD+RIV QDNI+TSAGVSAGLDL LWLAGQ+GGE+R Sbjct 113 LKDRRATSHWLTIPALKAFGAIPVADKRIVQQDNIITSAGVSAGLDLGLWLAGQIGGESR 172 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANLTAATLLAW 150 AKAIQLA+EYDPQPPFDSGHMSKAS +TK AATALLSKDSA P NL AAT+LAW Sbjct 173 AKAIQLALEYDPQPPFDSGHMSKASASTKVAATALLSKDSATPVNLKAATMLAW 226 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 30/36 (84%), Positives = 33/36 (92%), Gaps = 0/36 (0%) Query 1 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVW 36 M Q AFVAYPG TALD++GPYEVLRNLPHA+VRFVW Sbjct 1 MPQFAFVAYPGFTALDMIGPYEVLRNLPHAEVRFVW 36 >gi|254820892|ref|ZP_05225893.1| hypothetical protein MintA_13240 [Mycobacterium intracellulare ATCC 13950] Length=247 Score = 191 bits (484), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 106/119 (90%), Positives = 112/119 (95%), Gaps = 0/119 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L GRRATSHWLT+PALKAFGAIPVADERIVHQD+IVTSAGVSAGLDLALWLAGQ+GGE R Sbjct 113 LDGRRATSHWLTIPALKAFGAIPVADERIVHQDDIVTSAGVSAGLDLALWLAGQIGGENR 172 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANLTAATLLAWERALA 155 AKAIQLA+EYDPQPPFDSGHMSKAS TTKAAATALLSKDS KPAN+ A TLLAWE+AL Sbjct 173 AKAIQLALEYDPQPPFDSGHMSKASATTKAAATALLSKDSVKPANVKATTLLAWEQALG 231 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/36 (89%), Positives = 34/36 (95%), Gaps = 0/36 (0%) Query 1 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVW 36 MTQIAFVAYPG TALD++GPYEVLRNLP AQVRFVW Sbjct 1 MTQIAFVAYPGFTALDMIGPYEVLRNLPGAQVRFVW 36 >gi|342859582|ref|ZP_08716235.1| hypothetical protein MCOL_11903 [Mycobacterium colombiense CECT 3035] gi|342132714|gb|EGT85934.1| hypothetical protein MCOL_11903 [Mycobacterium colombiense CECT 3035] Length=247 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 101/118 (86%), Positives = 110/118 (94%), Gaps = 0/118 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L GRRATSHWLT+PALKAFGA+PVADERIVH D++VTSAGVSAGLDLALWLAGQ+ GE R Sbjct 113 LDGRRATSHWLTIPALKAFGAVPVADERIVHCDDVVTSAGVSAGLDLALWLAGQIAGEFR 172 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANLTAATLLAWERAL 154 AKAIQLA+EYDPQPPFDSGHMSKAS TTKAAATALLS+DS KPAN+ A TLLAWE+AL Sbjct 173 AKAIQLALEYDPQPPFDSGHMSKASATTKAAATALLSRDSVKPANVKATTLLAWEQAL 230 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/36 (84%), Positives = 33/36 (92%), Gaps = 0/36 (0%) Query 1 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVW 36 MTQIA VAYPG TALD++GPYEVLRNLP A+VRFVW Sbjct 1 MTQIAMVAYPGFTALDMIGPYEVLRNLPGAEVRFVW 36 >gi|120401988|ref|YP_951817.1| ThiJ/PfpI domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119954806|gb|ABM11811.1| ThiJ/PfpI domain protein [Mycobacterium vanbaalenii PYR-1] Length=249 Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 82/131 (63%), Positives = 103/131 (79%), Gaps = 1/131 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIV-HQDNIVTSAGVSAGLDLALWLAGQLGGEA 95 L G+RATSHW LP LK FG PV DER+V D VT+AGVSAG+DL LWLAGQ+ GE+ Sbjct 112 LDGKRATSHWAALPVLKTFGVQPVGDERVVVADDKTVTAAGVSAGIDLGLWLAGQIAGES 171 Query 96 RAKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANLTAATLLAWERALA 155 +AKAIQL++EYDPQPPFDSGHMSKAS +TKA ATA++ ++ AKPA L A+T L W+ AL Sbjct 172 KAKAIQLSMEYDPQPPFDSGHMSKASASTKALATAMMGREMAKPAALAASTGLLWDAALK 231 Query 156 AVQSRRRKRQP 166 +++RR + +P Sbjct 232 RIRARRSRPEP 242 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/62 (49%), Positives = 36/62 (59%), Gaps = 2/62 (3%) Query 3 QIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVWLRGR--RATSHWLTLPALKAFGAIPV 60 Q+A + YPG TALD +GPYE LR LP +VRFVW A SH L + A +F P Sbjct 2 QVAIMLYPGFTALDFIGPYESLRWLPDVEVRFVWHEPGPIAADSHVLLVGATHSFDETPS 61 Query 61 AD 62 D Sbjct 62 PD 63 >gi|118463154|ref|YP_881961.1| DJ-1/PfpI family protein [Mycobacterium avium 104] gi|118164441|gb|ABK65338.1| DJ-1/PfpI family protein [Mycobacterium avium 104] Length=247 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 100/130 (77%), Positives = 112/130 (87%), Gaps = 0/130 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L GRRATSHWLT+PALKAFG V DERIVH+D IVTSAGVSAGLDLALWLA Q+GG+ R Sbjct 113 LDGRRATSHWLTIPALKAFGVTAVPDERIVHEDGIVTSAGVSAGLDLALWLAAQIGGDGR 172 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANLTAATLLAWERALAA 156 AKAIQLA+EYDPQPPFDSGH+SKAS +TKAAATALLS+DS P L A LLAW++AL Sbjct 173 AKAIQLALEYDPQPPFDSGHLSKASASTKAAATALLSRDSLSPTYLKATALLAWDQALDR 232 Query 157 VQSRRRKRQP 166 V+SRRR+RQP Sbjct 233 VRSRRRRRQP 242 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 30/36 (84%), Positives = 34/36 (95%), Gaps = 0/36 (0%) Query 1 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVW 36 MTQIAF+AYPG TALD++GPYEVLRNLP A+VRFVW Sbjct 1 MTQIAFLAYPGFTALDMIGPYEVLRNLPGAEVRFVW 36 >gi|41407749|ref|NP_960585.1| hypothetical protein MAP1651c [Mycobacterium avium subsp. paratuberculosis K-10] gi|254775252|ref|ZP_05216768.1| hypothetical protein MaviaA2_11361 [Mycobacterium avium subsp. avium ATCC 25291] gi|41396102|gb|AAS03968.1| hypothetical protein MAP_1651c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336457409|gb|EGO36418.1| transcriptional regulator containing an amidase domain and an AraC-type DNA-binding protein [Mycobacterium avium subsp. paratuberculosis S397] Length=247 Score = 166 bits (421), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 100/130 (77%), Positives = 112/130 (87%), Gaps = 0/130 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L GRRATSHWLT+PALKAFG V DERIVH+D IVTSAGVSAGLDLALWLA Q+GG+ R Sbjct 113 LDGRRATSHWLTIPALKAFGVTAVPDERIVHEDGIVTSAGVSAGLDLALWLAAQIGGDGR 172 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANLTAATLLAWERALAA 156 AKAIQLA+EYDPQPPFDSGH+SKAS +TKAAATALLS+DS P L A LLAW++AL Sbjct 173 AKAIQLALEYDPQPPFDSGHLSKASASTKAAATALLSRDSLSPTYLKATALLAWDQALDR 232 Query 157 VQSRRRKRQP 166 V+SRRR+RQP Sbjct 233 VRSRRRRRQP 242 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 30/36 (84%), Positives = 34/36 (95%), Gaps = 0/36 (0%) Query 1 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVW 36 MTQIAF+AYPG TALD++GPYEVLRNLP A+VRFVW Sbjct 1 MTQIAFLAYPGFTALDMIGPYEVLRNLPGAEVRFVW 36 >gi|333988867|ref|YP_004521481.1| hypothetical protein JDM601_0227 [Mycobacterium sp. JDM601] gi|333484835|gb|AEF34227.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=237 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 87/125 (70%), Positives = 103/125 (83%), Gaps = 0/125 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L G+RATSHW+ LPALKAFG P+ADERIV +IVT AGVSAG+DL LWLAG++GGE R Sbjct 112 LSGKRATSHWMALPALKAFGVTPIADERIVVSGDIVTCAGVSAGIDLGLWLAGRIGGEHR 171 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANLTAATLLAWERALAA 156 AK IQL++EYDPQPPFDSGHMSKAS TKAAA+AL++KD A P+ L A LL W+RA+ A Sbjct 172 AKVIQLSLEYDPQPPFDSGHMSKASAKTKAAASALMAKDLATPSQLKAGALLLWDRAIGA 231 Query 157 VQSRR 161 +SRR Sbjct 232 ARSRR 236 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 25/34 (74%), Positives = 28/34 (83%), Gaps = 0/34 (0%) Query 3 QIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVW 36 QIA V YPG TALD +GPYEVLR LP A+VRF+W Sbjct 2 QIAIVLYPGFTALDFIGPYEVLRWLPDARVRFLW 35 >gi|118471850|ref|YP_885501.1| isonitrile hydratase [Mycobacterium smegmatis str. MC2 155] gi|118173137|gb|ABK74033.1| isonitrile hydratase, putative [Mycobacterium smegmatis str. MC2 155] Length=243 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 79/119 (67%), Positives = 95/119 (80%), Gaps = 1/119 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDN-IVTSAGVSAGLDLALWLAGQLGGEA 95 L G+RATSHW L ALK G V+DERIV D+ ++T+AGVSAG+DL +WLAGQ+ GEA Sbjct 112 LDGKRATSHWGALSALKMCGVTAVSDERIVRADDKVITAAGVSAGIDLGMWLAGQIAGEA 171 Query 96 RAKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANLTAATLLAWERAL 154 +AKAIQL IEYDPQPPFD+GHMSKAS TTKA ATALL +D KP L A+ LLAW++A+ Sbjct 172 KAKAIQLLIEYDPQPPFDAGHMSKASATTKAGATALLGRDMIKPEPLKASVLLAWDQAI 230 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/34 (77%), Positives = 28/34 (83%), Gaps = 0/34 (0%) Query 3 QIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVW 36 QIA V YP TALD +GPYEVLRNLP A+VRFVW Sbjct 2 QIAVVLYPTFTALDFIGPYEVLRNLPDAEVRFVW 35 >gi|296140203|ref|YP_003647446.1| ThiJ/PfpI domain-containing protein [Tsukamurella paurometabola DSM 20162] gi|296028337|gb|ADG79107.1| ThiJ/PfpI domain protein [Tsukamurella paurometabola DSM 20162] Length=233 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 77/119 (65%), Positives = 92/119 (78%), Gaps = 0/119 (0%) Query 40 RRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEARAKA 99 +RAT+HW LPAL+ + PV+D+RIVH+ +I T+AGVSAG+DLALWL GQ G A+A+A Sbjct 115 KRATTHWTMLPALRTYDVTPVSDQRIVHEGDIATAAGVSAGIDLALWLVGQTDGAAKAEA 174 Query 100 IQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANLTAATLLAWERALAAVQ 158 +QL IEYDPQPPFDSGH SKASP TKA A ALL D KPA L AA L W RA+AAV+ Sbjct 175 VQLMIEYDPQPPFDSGHTSKASPATKARAVALLGADVLKPAPLKAAARLLWNRAIAAVR 233 Score = 53.9 bits (128), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 22/34 (65%), Positives = 26/34 (77%), Gaps = 0/34 (0%) Query 3 QIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVW 36 Q+A V YP TALD +GPYEVLR +P +VRFVW Sbjct 2 QVAIVVYPDFTALDFIGPYEVLRMVPGNEVRFVW 35 >gi|145225840|ref|YP_001136518.1| ThiJ/PfpI domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315442452|ref|YP_004075331.1| transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Mycobacterium sp. Spyr1] gi|145218326|gb|ABP47730.1| ThiJ/PfpI domain protein [Mycobacterium gilvum PYR-GCK] gi|315260755|gb|ADT97496.1| transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Mycobacterium sp. Spyr1] Length=246 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 78/134 (59%), Positives = 100/134 (75%), Gaps = 1/134 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQD-NIVTSAGVSAGLDLALWLAGQLGGEA 95 L G+RATSHW LP LK GA PV D+RIV D VT+AGVSAG+DL LWLAG++ GE Sbjct 112 LDGKRATSHWAALPVLKTLGAQPVGDQRIVEADAKTVTAAGVSAGIDLGLWLAGRIAGEE 171 Query 96 RAKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANLTAATLLAWERALA 155 +AKAIQL++EYDPQPPFDSGHMSKAS TKA ATA++ ++ +PA L A+T L W+ AL Sbjct 172 KAKAIQLSMEYDPQPPFDSGHMSKASAGTKALATAMMGREMVRPAALAASTGLLWDAALK 231 Query 156 AVQSRRRKRQPVGA 169 ++ +R++ + A Sbjct 232 RIRRAKRRQGSLSA 245 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/62 (49%), Positives = 36/62 (59%), Gaps = 2/62 (3%) Query 3 QIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVWLRGR--RATSHWLTLPALKAFGAIPV 60 Q+A + YPG TALD +GPYE LR LP +VRFVW A SH L + A +F P Sbjct 2 QVAIMLYPGFTALDFIGPYESLRWLPDTEVRFVWHEPGPIAADSHVLLVGATHSFDETPS 61 Query 61 AD 62 D Sbjct 62 PD 63 >gi|262204278|ref|YP_003275486.1| thiJ/PfpI domain-containing protein [Gordonia bronchialis DSM 43247] gi|262087625|gb|ACY23593.1| ThiJ/PfpI domain protein [Gordonia bronchialis DSM 43247] Length=243 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/133 (60%), Positives = 96/133 (73%), Gaps = 3/133 (2%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L G+RATSHW + AL +GA V DER+VH ++VT+AGVSAG+DLAL LA ++ G+ R Sbjct 113 LDGKRATSHWSAVAALSMYGAQAVTDERVVHAGDVVTAAGVSAGIDLALQLAARIAGDER 172 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANLTAATLLAWERALAA 156 AKAIQLAIEYDPQPPFDSG + AS +T A +TALLSKD+ +P + AAT L WER A Sbjct 173 AKAIQLAIEYDPQPPFDSGDRATASTSTVARSTALLSKDALRPGPMKAATALLWER---A 229 Query 157 VQSRRRKRQPVGA 169 V R R PV A Sbjct 230 VHRIRGTRAPVTA 242 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/36 (78%), Positives = 29/36 (81%), Gaps = 0/36 (0%) Query 1 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVW 36 MTQIA V YP TALD VGPYEVLR LP A+VRFVW Sbjct 1 MTQIAIVVYPQFTALDFVGPYEVLRMLPDAEVRFVW 36 >gi|169628040|ref|YP_001701689.1| hypothetical protein MAB_0943 [Mycobacterium abscessus ATCC 19977] gi|169240007|emb|CAM61035.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=259 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 82/121 (68%), Positives = 94/121 (78%), Gaps = 2/121 (1%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDN--IVTSAGVSAGLDLALWLAGQLGGE 94 L G+RATSHW TLP LK FG PV DERIV + +VT+AGVSAG+DL LWLAGQ+ GE Sbjct 117 LEGQRATSHWSTLPLLKPFGVTPVGDERIVRTGHAGLVTAAGVSAGIDLGLWLAGQIAGE 176 Query 95 ARAKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANLTAATLLAWERAL 154 RAKAIQL+IEYDPQPPFDSGHMSKAS TKA ATA L+KD+ KP+ + A L W+ AL Sbjct 177 ERAKAIQLSIEYDPQPPFDSGHMSKASAATKATATAGLAKDTFKPSVMAAGAKLLWDGAL 236 Query 155 A 155 A Sbjct 237 A 237 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/67 (50%), Positives = 39/67 (59%), Gaps = 2/67 (2%) Query 2 TQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVWLRGRRAT--SHWLTLPALKAFGAIP 59 TQIA V YP TALD +GPYEVLR +P +VRFVW T S L + A +FG P Sbjct 6 TQIAIVLYPDFTALDFIGPYEVLRFIPDTEVRFVWHEPGPVTADSGVLVIGATHSFGETP 65 Query 60 VADERIV 66 D +V Sbjct 66 APDVVLV 72 >gi|343924457|ref|ZP_08764006.1| putative ThiJ/PfpI family protein [Gordonia alkanivorans NBRC 16433] gi|343765601|dbj|GAA10932.1| putative ThiJ/PfpI family protein [Gordonia alkanivorans NBRC 16433] Length=240 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 75/128 (59%), Positives = 90/128 (71%), Gaps = 3/128 (2%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVH---QDNIVTSAGVSAGLDLALWLAGQLGG 93 L G RAT+HW +L AL +G V DERIV + IVT+AGVSAG+DLALWLA ++ G Sbjct 113 LDGLRATTHWSSLAALSLYGVTAVPDERIVRAGPDERIVTAAGVSAGIDLALWLADEIAG 172 Query 94 EARAKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANLTAATLLAWERA 153 +A+AIQLAIEYDPQP DSGH SKAS T A+T LLS+D KP L +T L W+R Sbjct 173 TKKAEAIQLAIEYDPQPHLDSGHRSKASAGTITASTLLLSRDVHKPEVLKLSTQLLWDRT 232 Query 154 LAAVQSRR 161 LA V+SRR Sbjct 233 LAKVRSRR 240 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/35 (75%), Positives = 29/35 (83%), Gaps = 0/35 (0%) Query 1 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFV 35 MTQIA V YP TALD++GPYEVLR LP A+VRFV Sbjct 1 MTQIAIVLYPRFTALDLIGPYEVLRMLPDAEVRFV 35 >gi|108797727|ref|YP_637924.1| ThiJ/PfpI [Mycobacterium sp. MCS] gi|119866816|ref|YP_936768.1| ThiJ/PfpI domain-containing protein [Mycobacterium sp. KMS] gi|108768146|gb|ABG06868.1| ThiJ/PfpI [Mycobacterium sp. MCS] gi|119692905|gb|ABL89978.1| ThiJ/PfpI domain protein [Mycobacterium sp. KMS] Length=245 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/130 (60%), Positives = 94/130 (73%), Gaps = 1/130 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L GRRATSHW+ +P LK FG PV DER+V +VT+AGVSAGLD ALWL+ QL GEA+ Sbjct 113 LDGRRATSHWMAVPLLKPFGVTPVGDERVVRDGKVVTAAGVSAGLDFALWLSAQLAGEAQ 172 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDS-AKPANLTAATLLAWERALA 155 AK QL +EYDPQPPFDSGH+SKAS TKAAATA L KD+ L + L W+ AL Sbjct 173 AKVRQLILEYDPQPPFDSGHVSKASAVTKAAATAALGKDTFVTHRQLAPSAKLLWDTALQ 232 Query 156 AVQSRRRKRQ 165 AV++R +R+ Sbjct 233 AVRARNHRRK 242 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 26/36 (73%), Positives = 30/36 (84%), Gaps = 0/36 (0%) Query 1 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVW 36 MTQIA V YPG TALD +GPYEVLR+LP ++RFVW Sbjct 1 MTQIAIVLYPGFTALDFIGPYEVLRSLPDTEIRFVW 36 >gi|126433353|ref|YP_001069044.1| ThiJ/PfpI domain-containing protein [Mycobacterium sp. JLS] gi|126233153|gb|ABN96553.1| ThiJ/PfpI domain protein [Mycobacterium sp. JLS] Length=245 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 78/130 (60%), Positives = 94/130 (73%), Gaps = 1/130 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L GRRATSHW+ +P LK FG PV DER+V +VT+AGVSAGLD ALWL+ QL GEA+ Sbjct 113 LDGRRATSHWMAVPLLKPFGVTPVGDERVVRDGKVVTAAGVSAGLDFALWLSAQLAGEAQ 172 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDS-AKPANLTAATLLAWERALA 155 AK QL +EYDPQPPFDSGH+SKAS TKAAATA L KD+ L + L W+ AL Sbjct 173 AKVRQLILEYDPQPPFDSGHVSKASAVTKAAATAALGKDTFVTHRQLAPSAKLLWDTALQ 232 Query 156 AVQSRRRKRQ 165 AV++R +R+ Sbjct 233 AVRARNHRRK 242 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 26/36 (73%), Positives = 29/36 (81%), Gaps = 0/36 (0%) Query 1 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVW 36 MTQIA V YPG TALD +GPYEVLR+LP +RFVW Sbjct 1 MTQIAIVLYPGFTALDFIGPYEVLRSLPDTDIRFVW 36 >gi|317506888|ref|ZP_07964660.1| DJ-1/PfpI family protein [Segniliparus rugosus ATCC BAA-974] gi|316254816|gb|EFV14114.1| DJ-1/PfpI family protein [Segniliparus rugosus ATCC BAA-974] Length=337 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/123 (57%), Positives = 86/123 (70%), Gaps = 1/123 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 LRG++ATSHW L L+ FGA P RIV I T+AGVSAG+DLAL++ G++ G Sbjct 103 LRGKKATSHWRALDLLRPFGASPQPHSRIVSAGKITTAAGVSAGMDLALFMVGEIAGPGY 162 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSA-KPANLTAATLLAWERALA 155 AKA+QLA+EYDPQPPFDSGHMSKAS TK A A+++K KPA + A T L W+ AL Sbjct 163 AKALQLALEYDPQPPFDSGHMSKASLKTKTQAHAIMAKHGMFKPAEMAAGTRLLWDAALM 222 Query 156 AVQ 158 V+ Sbjct 223 RVR 225 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 19/25 (76%), Positives = 23/25 (92%), Gaps = 0/25 (0%) Query 12 VTALDVVGPYEVLRNLPHAQVRFVW 36 +TALD++GPYEVLR LP A+VRFVW Sbjct 1 MTALDMIGPYEVLRALPDAEVRFVW 25 >gi|169629984|ref|YP_001703633.1| hypothetical protein MAB_2900 [Mycobacterium abscessus ATCC 19977] gi|169241951|emb|CAM62979.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=256 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 66/131 (51%), Positives = 80/131 (62%), Gaps = 5/131 (3%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 LRGR AT HW L FGA P D+RIV ++T+AGVSAGLDL LWL G++ G R Sbjct 113 LRGRDATCHWAGQRLLATFGANPQRDKRIVRDGKVITAAGVSAGLDLGLWLVGEIAGRPR 172 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAAT----ALLSKDSAKPANLTAATLLAWER 152 A+A L IEYDPQPPF++GHMSKAS KA A LLS A L A + + W Sbjct 173 AEATALCIEYDPQPPFNTGHMSKASTRNKADAVRVIKGLLSARDAG-TELAAGSKMLWTN 231 Query 153 ALAAVQSRRRK 163 A+A ++S R Sbjct 232 AIARIRSTDRS 242 >gi|333919956|ref|YP_004493537.1| ThiJ/PfpI domain-containing protein [Amycolicicoccus subflavus DQS3-9A1] gi|333482177|gb|AEF40737.1| ThiJ/PfpI domain protein [Amycolicicoccus subflavus DQS3-9A1] Length=259 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 67/146 (46%), Positives = 86/146 (59%), Gaps = 13/146 (8%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L G+ AT+HW + LK GA + DERIVH IVT AGVSAG+DLALWL G++ G+ Sbjct 113 LDGKPATTHWSEMSVLKGLGAQAINDERIVHTGKIVTGAGVSAGIDLALWLVGRIAGDDV 172 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPA---------NLTAATL 147 A+A QL IEYDPQPP+DSG + KA+ TK A + +++ K A TA + Sbjct 173 ARAAQLVIEYDPQPPYDSGSLQKATAATKRGVAAFVGREAKKLAVTEPRAFLRETTALSE 232 Query 148 LAWERALAAVQ----SRRRKRQPVGA 169 LAW A+ + RRR R GA Sbjct 233 LAWRIAVRKARRHSPGRRRARGSSGA 258 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 25/34 (74%), Positives = 30/34 (89%), Gaps = 0/34 (0%) Query 3 QIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVW 36 QIA V YPG+TALD+VGPYEVLR +P A++RFVW Sbjct 2 QIAIVVYPGMTALDIVGPYEVLRCIPGAELRFVW 35 >gi|305666798|ref|YP_003863085.1| putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Maribacter sp. HTCC2170] gi|88709022|gb|EAR01256.1| putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Maribacter sp. HTCC2170] Length=234 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 52/106 (50%), Positives = 69/106 (66%), Gaps = 1/106 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L+ + ATSHW + LK FG P ++RIV Q +T+AGVSAG+D+AL+L+ ++ GE Sbjct 113 LKDKEATSHWKPINLLKDFGVKP-KNKRIVKQGKYITAAGVSAGIDMALYLSNEIVGEIE 171 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANL 142 KAIQL IEYDP P +DSG +SKAS A L+KD+ K L Sbjct 172 TKAIQLVIEYDPNPIYDSGSISKASNEVVKMAEIKLAKDAKKEIGL 217 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/62 (42%), Positives = 35/62 (57%), Gaps = 2/62 (3%) Query 3 QIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFV-WLRGR-RATSHWLTLPALKAFGAIPV 60 +I Y G+T LD +GPYEVLRN+ A+V FV +G +A S ++ L A I Sbjct 2 KIVIYIYNGITMLDAIGPYEVLRNMRDAEVYFVAENKGEIKADSDYVHLNAKFDINEIES 61 Query 61 AD 62 AD Sbjct 62 AD 63 >gi|149924861|ref|ZP_01913198.1| ThiJ/PfpI [Plesiocystis pacifica SIR-1] gi|149814276|gb|EDM73881.1| ThiJ/PfpI [Plesiocystis pacifica SIR-1] Length=246 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 56/126 (45%), Positives = 73/126 (58%), Gaps = 0/126 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L G AT+HW+ +L AFGA P +R+V I+T+AGVSAG+D+AL L +L GE Sbjct 117 LDGHPATTHWMVTKSLLAFGAEPRPHDRVVRSGKIITAAGVSAGIDMALSLLAELEGEQA 176 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANLTAATLLAWERALAA 156 AK QL IEYDPQPPFD GH+SKA P A A + +A P + + + R Sbjct 177 AKISQLLIEYDPQPPFDCGHVSKADPELIAEAKRQMFAAAANPRDFVSVPTVLLRRFKDV 236 Query 157 VQSRRR 162 + R R Sbjct 237 IAKRVR 242 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 22/35 (63%), Positives = 28/35 (80%), Gaps = 0/35 (0%) Query 2 TQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVW 36 TQ+A + YPG+TALD +GPYEVL N P+ +RFVW Sbjct 5 TQVAIMVYPGMTALDALGPYEVLHNHPNIDLRFVW 39 >gi|256377246|ref|YP_003100906.1| ThiJ/PfpI domain-containing protein [Actinosynnema mirum DSM 43827] gi|255921549|gb|ACU37060.1| ThiJ/PfpI domain protein [Actinosynnema mirum DSM 43827] Length=229 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 50/79 (64%), Positives = 61/79 (78%), Gaps = 1/79 (1%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L GRRATSHW +LP L GA+PVA ER+V N+VT AGVS+G+D AL LA +L G+A Sbjct 112 LTGRRATSHWGSLPLLAGLGAVPVA-ERVVRDGNVVTGAGVSSGVDFALSLAAELFGDAE 170 Query 97 AKAIQLAIEYDPQPPFDSG 115 AK +QL IEYDP+PPFD+G Sbjct 171 AKRVQLMIEYDPRPPFDAG 189 Score = 37.4 bits (85), Expect = 0.82, Method: Compositional matrix adjust. Identities = 15/36 (42%), Positives = 21/36 (59%), Gaps = 0/36 (0%) Query 1 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVW 36 MT+ + +P VT LD+ GP +V LP A+V W Sbjct 1 MTRFLCLLFPNVTQLDLTGPAQVFSRLPGAEVELAW 36 >gi|339007797|ref|ZP_08640371.1| putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Brevibacillus laterosporus LMG 15441] gi|338775000|gb|EGP34529.1| putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Brevibacillus laterosporus LMG 15441] Length=218 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 52/106 (50%), Positives = 69/106 (66%), Gaps = 1/106 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L+G +ATSHW +L L++ GAIP DER+V Q IVT+AGVS+G+D+AL L GE Sbjct 114 LKGLKATSHWSSLDLLQSLGAIP-TDERVVRQGKIVTAAGVSSGIDMALQLVAWESGEEM 172 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDSAKPANL 142 +K+IQL +EYDP PPFD+G + KA + A+L K K L Sbjct 173 SKSIQLLMEYDPMPPFDTGSLKKAPASMVEQLRAMLQKLENKEPEL 218 >gi|302759951|ref|XP_002963398.1| hypothetical protein SELMODRAFT_438544 [Selaginella moellendorffii] gi|300168666|gb|EFJ35269.1| hypothetical protein SELMODRAFT_438544 [Selaginella moellendorffii] Length=809 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/97 (56%), Positives = 66/97 (69%), Gaps = 1/97 (1%) Query 38 RGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEARA 97 +G AT+HW + L FGA PV+ RIV Q I+T+AGVSAG+D+AL LA L EA A Sbjct 684 KGIEATTHWNSHELLAEFGAKPVSS-RIVRQGKIITAAGVSAGIDMALQLAALLTDEATA 742 Query 98 KAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSK 134 K +QL IEYDPQPPFDSG ++KA P + A L SK Sbjct 743 KTLQLFIEYDPQPPFDSGSVAKAGPEVVSRAKELSSK 779 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 19/33 (58%), Positives = 23/33 (70%), Gaps = 0/33 (0%) Query 3 QIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFV 35 Q+A +P TALD VGPYEVL LP+ +V FV Sbjct 573 QLAIPIFPDFTALDAVGPYEVLHLLPNVEVLFV 605 >gi|302785824|ref|XP_002974683.1| hypothetical protein SELMODRAFT_442624 [Selaginella moellendorffii] gi|300157578|gb|EFJ24203.1| hypothetical protein SELMODRAFT_442624 [Selaginella moellendorffii] Length=802 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 54/97 (56%), Positives = 66/97 (69%), Gaps = 1/97 (1%) Query 38 RGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEARA 97 +G AT+HW + L FGA PV+ RIV Q I+T+AGVSAG+D+AL LA L EA A Sbjct 678 KGIEATTHWNSHELLAEFGAKPVSS-RIVRQGKIITAAGVSAGIDMALQLAALLTDEATA 736 Query 98 KAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSK 134 K +QL IEYDPQPPFDSG ++KA P + A L SK Sbjct 737 KTLQLFIEYDPQPPFDSGSVAKAGPEVVSRAKELSSK 773 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 19/33 (58%), Positives = 23/33 (70%), Gaps = 0/33 (0%) Query 3 QIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFV 35 Q+A +P TALD VGPYEVL LP+ +V FV Sbjct 567 QLAIPIFPDFTALDAVGPYEVLHLLPNVEVLFV 599 >gi|317130619|ref|YP_004096901.1| ThiJ/PfpI domain-containing protein [Bacillus cellulosilyticus DSM 2522] gi|315475567|gb|ADU32170.1| ThiJ/PfpI domain-containing protein [Bacillus cellulosilyticus DSM 2522] Length=232 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 48/100 (48%), Positives = 64/100 (64%), Gaps = 1/100 (1%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L G +ATSHW + L F AIP ER+V Q +T+AGVS+G+D+AL+L ++ G+ Sbjct 113 LSGLKATSHWKIIDLLSDFDAIPTR-ERVVEQGKYITAAGVSSGVDMALYLTNKIAGDLE 171 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKDS 136 KAIQL IEYDPQP F+SG+ S + A LSKD+ Sbjct 172 TKAIQLTIEYDPQPMFNSGNYSSSDKAVIQVANKKLSKDA 211 Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/66 (40%), Positives = 36/66 (55%), Gaps = 2/66 (3%) Query 3 QIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFV-WLRGR-RATSHWLTLPALKAFGAIPV 60 +I Y G+T LD +GPYEVLR + A+V FV RG +A S ++ A + I Sbjct 2 KIIIYVYDGMTMLDAIGPYEVLRYMNDAEVFFVGEKRGEIKADSGFIDFNAKYSIDDIHD 61 Query 61 ADERIV 66 AD I+ Sbjct 62 ADILII 67 >gi|54027017|ref|YP_121259.1| hypothetical protein nfa50430 [Nocardia farcinica IFM 10152] gi|54018525|dbj|BAD59895.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=234 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/131 (46%), Positives = 79/131 (61%), Gaps = 11/131 (8%) Query 39 GRRATSHWLTLPALKAFGAIPVADERIVHQD-NIVTSAGVSAGLDLALWLAGQLGGEARA 97 G+ AT+HW AL GA P ER+V D IVT+AGVSAG+D+ALWL ++ G RA Sbjct 104 GKPATTHWAAQSALGLLGAQPRKQERVVRADARIVTAAGVSAGIDMALWLVAEIHGADRA 163 Query 98 KAIQLAIEYDPQPPFDSGHMSKASPTTKAAAT--------ALLSKDSAKPANLTAATLLA 149 + +QL IEYDP+PP D+GH SKAS + A+ AL + + A+ +T A L Sbjct 164 RTVQLDIEYDPRPPVDAGHPSKASSAVRRASMADQAKLMRALTAGELAR--TVTGAQLAL 221 Query 150 WERALAAVQSR 160 W AL V++R Sbjct 222 WRGALRRVRAR 232 Score = 37.7 bits (86), Expect = 0.63, Method: Compositional matrix adjust. Identities = 15/24 (63%), Positives = 19/24 (80%), Gaps = 0/24 (0%) Query 12 VTALDVVGPYEVLRNLPHAQVRFV 35 +TALD +GPYEVLR P ++RFV Sbjct 1 MTALDAIGPYEVLRFAPDTEIRFV 24 >gi|284047113|ref|YP_003397453.1| ThiJ/PfpI domain protein [Conexibacter woesei DSM 14684] gi|283951334|gb|ADB54078.1| ThiJ/PfpI domain protein [Conexibacter woesei DSM 14684] Length=212 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/86 (59%), Positives = 60/86 (70%), Gaps = 1/86 (1%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 LRGRRATSHWL L L GA P A ER+V VT+AGVSAG+D+AL LAG++ G+ Sbjct 112 LRGRRATSHWLALEQLTGRGAEP-AHERVVFDGKYVTAAGVSAGIDMALTLAGRIAGDEV 170 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASP 122 A+ IQL IEYDPQPP+ +G A P Sbjct 171 AQTIQLGIEYDPQPPYAAGSAQSAPP 196 >gi|331695010|ref|YP_004331249.1| ThiJ/PfpI domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326949699|gb|AEA23396.1| ThiJ/PfpI domain-containing protein [Pseudonocardia dioxanivorans CB1190] Length=210 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/86 (57%), Positives = 59/86 (69%), Gaps = 1/86 (1%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L+GRRAT++WL L L FG IP DER+V V AGVSAG+D AL LA +L GE Sbjct 112 LKGRRATTYWLALDQLAEFGVIP-TDERVVVDGKYVIGAGVSAGIDAALTLASRLAGEDG 170 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASP 122 A+A+QL IEYDPQPPF +G + A P Sbjct 171 AQAVQLIIEYDPQPPFSAGSAATAPP 196 Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/33 (70%), Positives = 25/33 (76%), Gaps = 0/33 (0%) Query 3 QIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFV 35 QIA V YPG TALD+VGPYEVL LP +V FV Sbjct 2 QIAIVLYPGYTALDIVGPYEVLARLPGTEVVFV 34 >gi|229097452|ref|ZP_04228413.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Bacillus cereus Rock3-29] gi|229103542|ref|ZP_04234224.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Bacillus cereus Rock3-28] gi|229116455|ref|ZP_04245844.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Bacillus cereus Rock1-3] gi|228666967|gb|EEL22420.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Bacillus cereus Rock1-3] gi|228680038|gb|EEL34233.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Bacillus cereus Rock3-28] gi|228685951|gb|EEL39868.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Bacillus cereus Rock3-29] Length=215 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 45/85 (53%), Positives = 62/85 (73%), Gaps = 1/85 (1%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L G +ATSHW + L++ GAIP +ER+V + I+T+AGVSAG+D+AL L G+ + Sbjct 114 LNGVKATSHWSSFDLLRSLGAIP-TEERVVRHEKIITAAGVSAGIDMALQLMAWEFGDEK 172 Query 97 AKAIQLAIEYDPQPPFDSGHMSKAS 121 +KA+QL +EYDPQPPFD+G KAS Sbjct 173 SKAVQLMLEYDPQPPFDTGSPKKAS 197 Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust. Identities = 14/33 (43%), Positives = 21/33 (64%), Gaps = 0/33 (0%) Query 3 QIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFV 35 +I + Y G+TALD +GPYEV + ++FV Sbjct 2 EIVIMLYEGITALDAIGPYEVFAAESNNNIKFV 34 >gi|238026799|ref|YP_002911030.1| DJ-1/PfpI family protein [Burkholderia glumae BGR1] gi|237875993|gb|ACR28326.1| DJ-1/PfpI family protein [Burkholderia glumae BGR1] Length=232 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 48/80 (60%), Positives = 59/80 (74%), Gaps = 1/80 (1%) Query 36 WLRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEA 95 LRGRRAT+HW +LP L AFGA+PV ER+V +VT GV+AG+D AL +A +L GEA Sbjct 112 LLRGRRATTHWASLPLLAAFGAMPV-QERVVRDGRLVTGGGVTAGIDFALTIARELHGEA 170 Query 96 RAKAIQLAIEYDPQPPFDSG 115 A+A QLAIEY P PPF +G Sbjct 171 VAQAAQLAIEYAPAPPFGAG 190 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 23/66 (35%), Positives = 32/66 (49%), Gaps = 1/66 (1%) Query 2 TQIAFVAYPGVTALDVVGPYEVLRNLPHAQV-RFVWLRGRRATSHWLTLPALKAFGAIPV 60 +IA + +PGV ALD+VGP++V LP + R A +H L + F A P Sbjct 3 CRIALLMFPGVQALDLVGPHDVFAALPDTTLHRVAKSTAPLAAAHGLVMTPDTDFDACPD 62 Query 61 ADERIV 66 D V Sbjct 63 VDVLCV 68 >gi|83944848|ref|ZP_00957214.1| ThiJ/PfpI family protein [Oceanicaulis alexandrii HTCC2633] gi|83851630|gb|EAP89485.1| ThiJ/PfpI family protein [Oceanicaulis alexandrii HTCC2633] Length=226 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 46/94 (49%), Positives = 63/94 (68%), Gaps = 1/94 (1%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L+G RAT+HW L AFGAIPV +ER+VH ++T GV+AG+D AL + ++ G+A Sbjct 113 LKGVRATTHWRYHAHLSAFGAIPV-NERVVHDGRVITGGGVTAGIDFALSVMREIAGDAV 171 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATA 130 A +IQL +EYDP PP D+GH +AS + A A Sbjct 172 AASIQLGLEYDPAPPLDAGHPDRASSDVREAVEA 205 >gi|333023223|ref|ZP_08451287.1| putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Streptomyces sp. Tu6071] gi|332743075|gb|EGJ73516.1| putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Streptomyces sp. Tu6071] Length=234 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 46/81 (57%), Positives = 60/81 (75%), Gaps = 1/81 (1%) Query 40 RRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEARAKA 99 RRAT+HWL L+ +GA PVA ER+V VT+AGVSAG+D+ L L G+L G ARA+ Sbjct 116 RRATTHWLFPDVLREYGAEPVA-ERVVRDGKYVTAAGVSAGIDMGLALVGELAGRARAEE 174 Query 100 IQLAIEYDPQPPFDSGHMSKA 120 +QLA EYDP+PP+D+G +KA Sbjct 175 VQLATEYDPEPPYDAGSPAKA 195 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 0/40 (0%) Query 1 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVWLRGR 40 M IA + G TALD +GPYE++ +P A+ FV R R Sbjct 1 MPLIALALFDGFTALDAIGPYEMVCRVPGARTVFVADRPR 40 >gi|302522937|ref|ZP_07275279.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Streptomyces sp. SPB78] gi|318058290|ref|ZP_07977013.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Streptomyces sp. SA3_actG] gi|318079278|ref|ZP_07986610.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Streptomyces sp. SA3_actF] gi|302431832|gb|EFL03648.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Streptomyces sp. SPB78] Length=234 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 46/81 (57%), Positives = 60/81 (75%), Gaps = 1/81 (1%) Query 40 RRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEARAKA 99 RRAT+HWL L+ +GA PVA ER+V VT+AGVSAG+D+ L L G+L G ARA+ Sbjct 116 RRATTHWLFPDVLREYGAEPVA-ERVVRDGKYVTAAGVSAGIDMGLALVGELAGRARAEE 174 Query 100 IQLAIEYDPQPPFDSGHMSKA 120 +QLA EYDP+PP+D+G +KA Sbjct 175 VQLATEYDPEPPYDAGSPAKA 195 Score = 38.1 bits (87), Expect = 0.52, Method: Compositional matrix adjust. Identities = 19/40 (48%), Positives = 24/40 (60%), Gaps = 0/40 (0%) Query 1 MTQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVWLRGR 40 M IA + G TALD +GPYE+L +P A+ FV R R Sbjct 1 MPLIALALFDGFTALDAIGPYEMLCRVPGARTVFVADRPR 40 >gi|312197660|ref|YP_004017721.1| ThiJ/PfpI domain-containing protein [Frankia sp. EuI1c] gi|311228996|gb|ADP81851.1| ThiJ/PfpI domain-containing protein [Frankia sp. EuI1c] Length=214 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 49/91 (54%), Positives = 63/91 (70%), Gaps = 1/91 (1%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L GRRATS+WL L L GA+P A ER+V +T+AGVSAG+D+AL LA +L G++ Sbjct 112 LTGRRATSYWLALDQLAELGAVPTA-ERVVVDGKYMTAAGVSAGIDMALTLAARLAGDSV 170 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAA 127 A+A+QL +EYDP PPFD+G A P AA Sbjct 171 AQALQLGVEYDPHPPFDAGSPRTAPPEIVAA 201 >gi|46204064|ref|ZP_00209240.1| COG0693: Putative intracellular protease/amidase [Magnetospirillum magnetotacticum MS-1] Length=234 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 50/98 (52%), Positives = 60/98 (62%), Gaps = 1/98 (1%) Query 36 WLRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEA 95 LRGRRAT+HW L AFGA+PV ER+V N++T GV+AG+D L LA +L EA Sbjct 118 LLRGRRATTHWAAHDLLAAFGAVPV-QERVVRDGNLITGGGVTAGIDFGLTLAAELADEA 176 Query 96 RAKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLS 133 A+ IQL EY P PPF +G A P AAA LS Sbjct 177 TARTIQLQQEYAPTPPFSAGRPDTAGPAITAAARERLS 214 Score = 38.5 bits (88), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/61 (38%), Positives = 31/61 (51%), Gaps = 1/61 (1%) Query 3 QIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFV-WLRGRRATSHWLTLPALKAFGAIPVA 61 +I F+ +P V LD+ GPYEVL +P A+V V A++ L L F A P Sbjct 10 EIGFLVFPQVQQLDLTGPYEVLAMVPGARVHLVAKTLAPVASTTGLVLTPTITFTACPAL 69 Query 62 D 62 D Sbjct 70 D 70 >gi|302765010|ref|XP_002965926.1| hypothetical protein SELMODRAFT_407075 [Selaginella moellendorffii] gi|300166740|gb|EFJ33346.1| hypothetical protein SELMODRAFT_407075 [Selaginella moellendorffii] Length=673 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 44/84 (53%), Positives = 60/84 (72%), Gaps = 1/84 (1%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L+G +AT+HW P LK +GA V +R + Q IVT+AGVS+G+D+A++LA + E Sbjct 119 LKGVKATTHWAAYPQLKEYGA-KVTSQRYIKQGKIVTAAGVSSGIDMAIYLASIITNEKI 177 Query 97 AKAIQLAIEYDPQPPFDSGHMSKA 120 AKA+QL IEYDPQPP+D+G KA Sbjct 178 AKAVQLMIEYDPQPPYDAGSPCKA 201 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 15/33 (46%), Positives = 19/33 (58%), Gaps = 0/33 (0%) Query 3 QIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFV 35 Q+A + +T LD +GPYE L LP V FV Sbjct 9 QVAIPIFNNITVLDAIGPYEALHRLPGVSVTFV 41 >gi|290963231|ref|YP_003494413.1| hypothetical protein SCAB_89551 [Streptomyces scabiei 87.22] gi|260652757|emb|CBG75890.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length=253 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 48/97 (50%), Positives = 65/97 (68%), Gaps = 0/97 (0%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L GRRAT++W + L++ + +R V I+TSAGVSAG+D++L+LA + + Sbjct 153 LTGRRATTYWASADYLRSTFDVTYLPQRYVRSGKIITSAGVSAGVDMSLYLASLIADDDT 212 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLS 133 AKAIQLA+EYDPQPPFDSG + ASP K A LL+ Sbjct 213 AKAIQLAVEYDPQPPFDSGDAAAASPRLKERALRLLA 249 >gi|29828208|ref|NP_822842.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Streptomyces avermitilis MA-4680] gi|29605310|dbj|BAC69377.1| putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Streptomyces avermitilis MA-4680] Length=211 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 45/83 (55%), Positives = 58/83 (70%), Gaps = 1/83 (1%) Query 38 RGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEARA 97 +GRRATSHWL L L FGA P ER+V VT+AGVS+G+D+ L L G++ G+ A Sbjct 113 KGRRATSHWLALDLLDRFGAAPTG-ERVVFDGKYVTAAGVSSGIDMGLALLGRIAGDEHA 171 Query 98 KAIQLAIEYDPQPPFDSGHMSKA 120 +A+QL EYDPQPP+D+G KA Sbjct 172 QAVQLLTEYDPQPPYDAGSPQKA 194 >gi|302769864|ref|XP_002968351.1| hypothetical protein SELMODRAFT_227780 [Selaginella moellendorffii] gi|300163995|gb|EFJ30605.1| hypothetical protein SELMODRAFT_227780 [Selaginella moellendorffii] Length=215 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 44/84 (53%), Positives = 60/84 (72%), Gaps = 1/84 (1%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L+G +AT+HW P LK +GA V +R + Q IVT+AGVS+G+D+A++LA + E Sbjct 116 LKGVKATTHWAAYPQLKEYGA-KVTSQRYIKQGKIVTAAGVSSGIDMAIYLASIITNEKI 174 Query 97 AKAIQLAIEYDPQPPFDSGHMSKA 120 AKA+QL IEYDPQPP+D+G KA Sbjct 175 AKAVQLMIEYDPQPPYDAGSPCKA 198 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 14/33 (43%), Positives = 19/33 (58%), Gaps = 0/33 (0%) Query 3 QIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFV 35 ++A + +T LD +GPYE L LP V FV Sbjct 6 KVAIPIFNNITVLDAIGPYEALHRLPGVSVTFV 38 >gi|291435825|ref|ZP_06575215.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Streptomyces ghanaensis ATCC 14672] gi|291338720|gb|EFE65676.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Streptomyces ghanaensis ATCC 14672] Length=211 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 45/83 (55%), Positives = 58/83 (70%), Gaps = 1/83 (1%) Query 38 RGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEARA 97 GRRATSHWL L L+ FGA P ER+V VT+AGVS+G+D+ L L G++ G+ A Sbjct 113 EGRRATSHWLALEHLRRFGAEPTG-ERVVTDGKYVTAAGVSSGIDMGLTLLGRIAGDDHA 171 Query 98 KAIQLAIEYDPQPPFDSGHMSKA 120 +A+QL EYDPQPP+D+G KA Sbjct 172 RAVQLLTEYDPQPPYDAGSPQKA 194 >gi|289767688|ref|ZP_06527066.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Streptomyces lividans TK24] gi|289697887|gb|EFD65316.1| 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme [Streptomyces lividans TK24] Length=211 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 44/81 (55%), Positives = 57/81 (71%), Gaps = 1/81 (1%) Query 40 RRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEARAKA 99 RRATSHWL L LK +GA P ER+V VT+AGVS+G+D+ L L G++ G+ A+A Sbjct 115 RRATSHWLALDLLKGYGAEPTG-ERVVTDGKYVTAAGVSSGIDMGLTLVGRIAGDEHAQA 173 Query 100 IQLAIEYDPQPPFDSGHMSKA 120 +QL EYDPQPP+D+G KA Sbjct 174 VQLLTEYDPQPPYDAGSPDKA 194 >gi|330816283|ref|YP_004359988.1| DJ-1/PfpI family protein [Burkholderia gladioli BSR3] gi|327368676|gb|AEA60032.1| DJ-1/PfpI family protein [Burkholderia gladioli BSR3] Length=229 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 45/79 (57%), Positives = 60/79 (76%), Gaps = 1/79 (1%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L+GRRAT+HW LP L+AFGA PV ER+V ++VT G++AG+D AL +A +L G+A Sbjct 113 LQGRRATTHWAFLPLLEAFGATPV-RERVVRDGSLVTGGGITAGIDFALTIARELHGDAV 171 Query 97 AKAIQLAIEYDPQPPFDSG 115 A+A QL+IEY P PPFD+G Sbjct 172 AQATQLSIEYAPAPPFDAG 190 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 32/65 (50%), Gaps = 1/65 (1%) Query 3 QIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFVWLRGRRA-TSHWLTLPALKAFGAIPVA 61 +IA + +PGV ALD+VGPY+V LP V V G +H LTL F P Sbjct 4 RIALLMFPGVQALDLVGPYDVFAALPDTTVHLVSRDGAPVQAAHGLTLSPDTRFEDCPPV 63 Query 62 DERIV 66 D V Sbjct 64 DVLCV 68 >gi|284043704|ref|YP_003394044.1| ThiJ/PfpI domain protein [Conexibacter woesei DSM 14684] gi|283947925|gb|ADB50669.1| ThiJ/PfpI domain protein [Conexibacter woesei DSM 14684] Length=222 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 61/84 (73%), Gaps = 1/84 (1%) Query 39 GRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEARAK 98 GRRAT+HW L +L+ FGA PV+ ER+V ++VT+AGVSAG+D+ALW+ Q+ G ++ Sbjct 113 GRRATTHWYELESLRVFGAEPVS-ERVVRDGDVVTAAGVSAGIDMALWVLEQIAGAEHSR 171 Query 99 AIQLAIEYDPQPPFDSGHMSKASP 122 A+ L +EYDP PP +G + +A P Sbjct 172 AVHLVMEYDPDPPQPTGSVGRAPP 195 >gi|168032228|ref|XP_001768621.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680120|gb|EDQ66559.1| predicted protein [Physcomitrella patens subsp. patens] Length=275 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/99 (49%), Positives = 57/99 (58%), Gaps = 1/99 (1%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L G AT HW LP L FGA P + RIV I+T+AGVSAG+D+ L L L + Sbjct 171 LNGLEATCHWRVLPELSKFGAKPTS-SRIVESGKIITAAGVSAGIDMGLKLVALLSNDTT 229 Query 97 AKAIQLAIEYDPQPPFDSGHMSKASPTTKAAATALLSKD 135 K IQL IEYDPQPPFD G + A P + A A K+ Sbjct 230 CKLIQLVIEYDPQPPFDCGSPAAAGPELVSMARAYAEKN 268 Score = 40.8 bits (94), Expect = 0.083, Method: Compositional matrix adjust. Identities = 16/34 (48%), Positives = 22/34 (65%), Gaps = 0/34 (0%) Query 2 TQIAFVAYPGVTALDVVGPYEVLRNLPHAQVRFV 35 T++A V +P +T LD +GPYE L LP+ V V Sbjct 60 TKVAIVIFPNITVLDFIGPYEPLNRLPNVNVVLV 93 >gi|302765006|ref|XP_002965924.1| hypothetical protein SELMODRAFT_439354 [Selaginella moellendorffii] gi|300166738|gb|EFJ33344.1| hypothetical protein SELMODRAFT_439354 [Selaginella moellendorffii] Length=353 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 42/79 (54%), Positives = 58/79 (74%), Gaps = 1/79 (1%) Query 37 LRGRRATSHWLTLPALKAFGAIPVADERIVHQDNIVTSAGVSAGLDLALWLAGQLGGEAR 96 L+G +AT+HW P LK +GA V +R + Q IVT+AGVS+G+D+A++LA + E Sbjct 119 LKGVKATTHWAAYPQLKEYGA-KVTSQRYIKQGKIVTAAGVSSGIDMAIYLASIITNEKI 177 Query 97 AKAIQLAIEYDPQPPFDSG 115 AKA+QL IEYDPQPP+D+G Sbjct 178 AKAVQLMIEYDPQPPYDAG 196 Lambda K H 0.319 0.131 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 142560794112 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40