BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1931c
Length=259
Score E
Sequences producing significant alignments: (Bits) Value
gi|15841402|ref|NP_336439.1| AraC family transcriptional regulat... 507 7e-142
gi|15609068|ref|NP_216447.1| transcriptional regulatory protein ... 506 2e-141
gi|308370870|ref|ZP_07423012.2| transcriptional regulator [Mycob... 505 3e-141
gi|289570015|ref|ZP_06450242.1| transcriptional regulator [Mycob... 504 4e-141
gi|289443411|ref|ZP_06433155.1| LOW QUALITY PROTEIN: transcripti... 499 1e-139
gi|118618317|ref|YP_906649.1| transcriptional regulatory protein... 221 8e-56
gi|254820891|ref|ZP_05225892.1| hypothetical protein MintA_13235... 218 7e-55
gi|342859583|ref|ZP_08716236.1| hypothetical protein MCOL_11908 ... 218 1e-54
gi|183982859|ref|YP_001851150.1| transcriptional regulatory prot... 216 3e-54
gi|296164962|ref|ZP_06847517.1| transcriptional regulator DarR [... 213 2e-53
gi|254775251|ref|ZP_05216767.1| hypothetical protein MaviaA2_113... 212 4e-53
gi|336457410|gb|EGO36419.1| transcriptional regulator containing... 212 4e-53
gi|240170190|ref|ZP_04748849.1| transcriptional regulatory prote... 211 9e-53
gi|41407750|ref|NP_960586.1| hypothetical protein MAP1652c [Myco... 207 2e-51
gi|126433352|ref|YP_001069043.1| AraC family transcriptional reg... 204 8e-51
gi|108797726|ref|YP_637923.1| AraC family transcriptional regula... 204 9e-51
gi|315442451|ref|YP_004075330.1| transcriptional regulator conta... 199 5e-49
gi|145225841|ref|YP_001136519.1| AraC family transcriptional reg... 196 2e-48
gi|118471063|ref|YP_885500.1| AraC family transcriptional regula... 194 2e-47
gi|120401987|ref|YP_951816.1| AraC family transcriptional regula... 188 6e-46
gi|296140202|ref|YP_003647445.1| AraC family transcriptional reg... 176 3e-42
gi|118469488|ref|YP_887672.1| AraC family transcriptional regula... 172 4e-41
gi|343924458|ref|ZP_08764007.1| putative AraC family transcripti... 169 4e-40
gi|169628039|ref|YP_001701688.1| AraC family transcriptional reg... 167 2e-39
gi|167970555|ref|ZP_02552832.1| transcriptional regulatory prote... 153 2e-35
gi|333988868|ref|YP_004521482.1| AraC family transcriptional reg... 152 5e-35
gi|291008754|ref|ZP_06566727.1| AraC family transcriptional regu... 121 8e-26
gi|302528640|ref|ZP_07280982.1| transcriptional regulator [Strep... 121 8e-26
gi|134102854|ref|YP_001108515.1| AraC family transcriptional reg... 121 1e-25
gi|262204277|ref|YP_003275485.1| AraC family transcriptional reg... 120 2e-25
gi|54024338|ref|YP_118580.1| putative transcriptional regulator ... 115 5e-24
gi|297155908|gb|ADI05620.1| hypothetical protein SBI_02499 [Stre... 115 5e-24
gi|149923867|ref|ZP_01912256.1| transcriptional regulator, AraC ... 114 1e-23
gi|302547988|ref|ZP_07300330.1| transcriptional regulator DarR [... 113 3e-23
gi|116049802|ref|YP_791391.1| putative transcriptional regulator... 112 5e-23
gi|290955861|ref|YP_003487043.1| transcriptional regulator [Stre... 111 1e-22
gi|312960026|ref|ZP_07774539.1| transcriptional regulator, AraC ... 110 2e-22
gi|163792814|ref|ZP_02186791.1| Helix-turn-helix, AraC type:ThiJ... 109 4e-22
gi|262204457|ref|YP_003275665.1| thiJ/PfpI domain-containing pro... 108 6e-22
gi|152987949|ref|YP_001348802.1| putative transcriptional regula... 107 1e-21
gi|319796377|ref|YP_004158017.1| AraC family transcriptional reg... 104 1e-20
gi|300311850|ref|YP_003775942.1| AraC family transcription regul... 104 1e-20
gi|333990643|ref|YP_004523257.1| transcriptional regulator [Myco... 103 2e-20
gi|220922265|ref|YP_002497567.1| AraC family transcriptional reg... 103 2e-20
gi|320007275|gb|ADW02125.1| transcriptional regulator, AraC fami... 101 8e-20
gi|152970261|ref|YP_001335370.1| putative helix-turn-helix, AraC... 101 1e-19
gi|218529467|ref|YP_002420283.1| AraC family transcriptional reg... 100 2e-19
gi|254560389|ref|YP_003067484.1| AraC family transcriptional reg... 100 2e-19
gi|111017320|ref|YP_700292.1| AraC family transcriptional regula... 100 3e-19
gi|312197659|ref|YP_004017720.1| AraC family transcriptional reg... 99.8 4e-19
>gi|15841402|ref|NP_336439.1| AraC family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|148823143|ref|YP_001287897.1| transcriptional regulator [Mycobacterium tuberculosis F11]
gi|253799022|ref|YP_003032023.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
19 more sequence titles
Length=263
Score = 507 bits (1305), Expect = 7e-142, Method: Compositional matrix adjust.
Identities = 259/259 (100%), Positives = 259/259 (100%), Gaps = 0/259 (0%)
Query 1 VVIVGFPGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGL 60
VVIVGFPGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGL
Sbjct 5 VVIVGFPGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGL 64
Query 61 LGRTPSDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPR 120
LGRTPSDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPR
Sbjct 65 LGRTPSDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPR 124
Query 121 HRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQ 180
HRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQ
Sbjct 125 HRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQ 184
Query 181 RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMR 240
RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMR
Sbjct 185 RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMR 244
Query 241 RSFIRRVGISPDQYRKAFA 259
RSFIRRVGISPDQYRKAFA
Sbjct 245 RSFIRRVGISPDQYRKAFA 263
>gi|15609068|ref|NP_216447.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|31793123|ref|NP_855616.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
gi|121637836|ref|YP_978059.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
35 more sequence titles
Length=259
Score = 506 bits (1302), Expect = 2e-141, Method: Compositional matrix adjust.
Identities = 258/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)
Query 1 VVIVGFPGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGL 60
+VIVGFPGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGL
Sbjct 1 MVIVGFPGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGL 60
Query 61 LGRTPSDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPR 120
LGRTPSDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPR
Sbjct 61 LGRTPSDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPR 120
Query 121 HRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQ 180
HRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQ
Sbjct 121 HRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQ 180
Query 181 RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMR 240
RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMR
Sbjct 181 RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMR 240
Query 241 RSFIRRVGISPDQYRKAFA 259
RSFIRRVGISPDQYRKAFA
Sbjct 241 RSFIRRVGISPDQYRKAFA 259
>gi|308370870|ref|ZP_07423012.2| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
gi|308373278|ref|ZP_07431684.2| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
gi|308374443|ref|ZP_07436065.2| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
13 more sequence titles
Length=306
Score = 505 bits (1300), Expect = 3e-141, Method: Compositional matrix adjust.
Identities = 259/259 (100%), Positives = 259/259 (100%), Gaps = 0/259 (0%)
Query 1 VVIVGFPGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGL 60
VVIVGFPGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGL
Sbjct 48 VVIVGFPGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGL 107
Query 61 LGRTPSDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPR 120
LGRTPSDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPR
Sbjct 108 LGRTPSDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPR 167
Query 121 HRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQ 180
HRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQ
Sbjct 168 HRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQ 227
Query 181 RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMR 240
RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMR
Sbjct 228 RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMR 287
Query 241 RSFIRRVGISPDQYRKAFA 259
RSFIRRVGISPDQYRKAFA
Sbjct 288 RSFIRRVGISPDQYRKAFA 306
>gi|289570015|ref|ZP_06450242.1| transcriptional regulator [Mycobacterium tuberculosis T17]
gi|289543769|gb|EFD47417.1| transcriptional regulator [Mycobacterium tuberculosis T17]
Length=259
Score = 504 bits (1299), Expect = 4e-141, Method: Compositional matrix adjust.
Identities = 257/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%)
Query 1 VVIVGFPGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGL 60
+VIVGFPGDPVDTVILPGGAGVDAARSEPALI+WVKAVSGTARRVVTVCTGAFLAAEAGL
Sbjct 1 MVIVGFPGDPVDTVILPGGAGVDAARSEPALINWVKAVSGTARRVVTVCTGAFLAAEAGL 60
Query 61 LGRTPSDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPR 120
LGRTPSDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPR
Sbjct 61 LGRTPSDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPR 120
Query 121 HRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQ 180
HRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQ
Sbjct 121 HRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQ 180
Query 181 RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMR 240
RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMR
Sbjct 181 RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMR 240
Query 241 RSFIRRVGISPDQYRKAFA 259
RSFIRRVGISPDQYRKAFA
Sbjct 241 RSFIRRVGISPDQYRKAFA 259
>gi|289443411|ref|ZP_06433155.1| LOW QUALITY PROTEIN: transcriptional regulator [Mycobacterium
tuberculosis T46]
gi|289416330|gb|EFD13570.1| LOW QUALITY PROTEIN: transcriptional regulator [Mycobacterium
tuberculosis T46]
Length=258
Score = 499 bits (1286), Expect = 1e-139, Method: Compositional matrix adjust.
Identities = 255/255 (100%), Positives = 255/255 (100%), Gaps = 0/255 (0%)
Query 5 GFPGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRT 64
GFPGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRT
Sbjct 4 GFPGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRT 63
Query 65 PSDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDC 124
PSDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDC
Sbjct 64 PSDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDC 123
Query 125 PDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQRAAM 184
PDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQRAAM
Sbjct 124 PDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQRAAM 183
Query 185 SPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMRRSFI 244
SPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMRRSFI
Sbjct 184 SPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMRRSFI 243
Query 245 RRVGISPDQYRKAFA 259
RRVGISPDQYRKAFA
Sbjct 244 RRVGISPDQYRKAFA 258
>gi|118618317|ref|YP_906649.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|118570427|gb|ABL05178.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=316
Score = 221 bits (563), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 149/272 (55%), Positives = 162/272 (60%), Gaps = 38/272 (13%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLG--RT 64
P PVDTV+LPGG GVDAAR AL+DWVKA +GTARRVVTVCTG FLAAEAGLL R
Sbjct 64 PSAPVDTVVLPGGGGVDAARDNVALMDWVKAAAGTARRVVTVCTGTFLAAEAGLLDGCRA 123
Query 65 PSDDALG--LCRTF--------------RPRISGRSGRCR-PDLHAQFAEGVDRGWSHRR 107
+ A L R F P++ +G DL EG D G +
Sbjct 124 TTHWAFADRLAREFPAVDVDPDPIFIRSSPKVWTAAGVTAGIDLALALVEG-DHGTEIAQ 182
Query 108 HRPRAGTGRRRPRHRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRG 167
R R R C A PV P +R D + P
Sbjct 183 TVARWLVLYLR---RPCGQ-TQFAAPVWMPRAKRPSIR----DVQEAIEAQP-------- 226
Query 168 RAGGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAI 227
GG H I ELA RAAMSPRHFTRVF+ EVGEAPGRYVER+RTEAARRQLEET DTVVAI
Sbjct 227 --GGPHSIEELAHRAAMSPRHFTRVFTGEVGEAPGRYVERVRTEAARRQLEETEDTVVAI 284
Query 228 AARCGFGTAETMRRSFIRRVGISPDQYRKAFA 259
AARCGFGTAETMRR+FIRRVGISPDQYRKAFA
Sbjct 285 AARCGFGTAETMRRNFIRRVGISPDQYRKAFA 316
>gi|254820891|ref|ZP_05225892.1| hypothetical protein MintA_13235 [Mycobacterium intracellulare
ATCC 13950]
Length=316
Score = 218 bits (555), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 134/271 (50%), Positives = 161/271 (60%), Gaps = 36/271 (13%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPS 66
PGD +DTV+LPGG G+DAAR++ L+ WVKAV+G ARR+VTVCTGAFLAA+AGLL
Sbjct 64 PGDSIDTVVLPGGGGIDAARADAELVAWVKAVAGHARRMVTVCTGAFLAAQAGLL----D 119
Query 67 DDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWS---------------HRRHRPR 111
+ F R++ D F + W+ H
Sbjct 120 GQRVTTHWAFAERLASEFPAIEVDADPIFVRSSETVWTAAGVTAGIDLALALIEEDHGTE 179
Query 112 AG--TGRRRPRHRDCPDG-CPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGR 168
R H P G A PV P D +R + + +P
Sbjct 180 VAQTVARWLVLHLRRPGGQTQFAAPVWMPRARRDSIR----EVQETIEAEP--------- 226
Query 169 AGGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIA 228
GG+H + +LA+RAAMSPRHFTRVF+ E+GEAPG+YVERIRTEAARRQLEET DTVVAIA
Sbjct 227 -GGSHSVDDLARRAAMSPRHFTRVFTAEIGEAPGQYVERIRTEAARRQLEETDDTVVAIA 285
Query 229 ARCGFGTAETMRRSFIRRVGISPDQYRKAFA 259
ARCGFGTAETMRR+F+RRVGISPDQYRKAFA
Sbjct 286 ARCGFGTAETMRRNFLRRVGISPDQYRKAFA 316
>gi|342859583|ref|ZP_08716236.1| hypothetical protein MCOL_11908 [Mycobacterium colombiense CECT
3035]
gi|342132715|gb|EGT85935.1| hypothetical protein MCOL_11908 [Mycobacterium colombiense CECT
3035]
Length=316
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 143/271 (53%), Positives = 165/271 (61%), Gaps = 36/271 (13%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLL-GRTP 65
PGDP+DTV+LPGGAGVDAAR + L+ W KAV+ ARRVVTVCTGAFLAAEAGLL GR
Sbjct 64 PGDPIDTVVLPGGAGVDAARRDADLVAWTKAVATRARRVVTVCTGAFLAAEAGLLDGRRV 123
Query 66 SDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDCP 125
+ F R++ D F D W+ AG D
Sbjct 124 TTH-----WAFAERLASEYPAVDVDADPIFVRSSDTLWTA--AGVTAGIDLTLALIED-D 175
Query 126 DGCPLARPVS-----------APTRWADPV------RGSGVDATRQTDLDPPGAGGHRGR 168
G LA+ V+ T++A PV R S + + +P
Sbjct 176 HGTELAQTVARWLVLYLRRPGGQTQFAAPVWMPRARRDSIREVQEAIEAEP--------- 226
Query 169 AGGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIA 228
G H I ELA+RAAMSPRHFTRVF+ E+GEAPG+YVERIRTEAARRQLEET DTVVAIA
Sbjct 227 -GRPHSIDELARRAAMSPRHFTRVFTAEIGEAPGQYVERIRTEAARRQLEETDDTVVAIA 285
Query 229 ARCGFGTAETMRRSFIRRVGISPDQYRKAFA 259
ARCGFGTAETMRR+F+RRVGISPDQYRKAFA
Sbjct 286 ARCGFGTAETMRRNFLRRVGISPDQYRKAFA 316
>gi|183982859|ref|YP_001851150.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183176185|gb|ACC41295.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=316
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 147/273 (54%), Positives = 162/273 (60%), Gaps = 40/273 (14%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLG--RT 64
P PVDTV+LPGG GVDAAR AL+DWVKA +GTARRVVTVCTG FLAAEAGLL R
Sbjct 64 PSAPVDTVVLPGGGGVDAARDNVALMDWVKAAAGTARRVVTVCTGTFLAAEAGLLDGCRA 123
Query 65 PSDDALG--LCRTF--------------RPRISGRSGRCR-PDLHAQFAEGVDRGWSHRR 107
+ A L R F P++ +G DL EG D G +
Sbjct 124 TTHWAFADRLAREFPAVDVDPDPIFIRSSPKVWTAAGVTAGIDLALALVEG-DHGTEIAQ 182
Query 108 HRPR-AGTGRRRPRHRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHR 166
R RRP + A PV P +R D + P
Sbjct 183 TVARWLVLYLRRPGGQ-----TQFAAPVWMPRAKRPSIR----DVQEAIEAQP------- 226
Query 167 GRAGGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVA 226
GG H I ELA RAAMSPRHFTRVF+ EVGEAP +YVER+RTEAARRQLEET DTVVA
Sbjct 227 ---GGPHSIEELAHRAAMSPRHFTRVFTGEVGEAPRQYVERVRTEAARRQLEETEDTVVA 283
Query 227 IAARCGFGTAETMRRSFIRRVGISPDQYRKAFA 259
IAARCGFGTAETMRR+FIRRVGISPDQYRKAFA
Sbjct 284 IAARCGFGTAETMRRNFIRRVGISPDQYRKAFA 316
>gi|296164962|ref|ZP_06847517.1| transcriptional regulator DarR [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899610|gb|EFG79061.1| transcriptional regulator DarR [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=319
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 142/273 (53%), Positives = 167/273 (62%), Gaps = 37/273 (13%)
Query 7 PGDP---VDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLL-G 62
PGDP +DTV+LPGG GVDAARS+ LI W+KAV+G ARRVVTVCTGAFLAAEAGLL G
Sbjct 64 PGDPSEKIDTVVLPGGGGVDAARSDAELIGWIKAVAGAARRVVTVCTGAFLAAEAGLLDG 123
Query 63 RTPSDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHR 122
R + F R++ D F D W+ AG
Sbjct 124 RRVTTH-----WAFADRLAREFPAIDVDADPIFVRSSDAVWTA--AGVTAGIDLALSLVE 176
Query 123 DCPDGCPLARPVS-----------APTRWADPV-----RGSGVDATRQTDLDPPGAGGHR 166
D G +A+ V+ T++A PV + + + A ++ PG+
Sbjct 177 D-DHGTEVAQTVARWLVLYLRRPGGQTQFAAPVWMPRAKRNSIRAVQEAIEAEPGS---- 231
Query 167 GRAGGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVA 226
H I ELA+RAAMSPRHFTRVF+ EVGEAPG+YVERIRTEAARRQLEET DTVVA
Sbjct 232 -----EHSIDELARRAAMSPRHFTRVFTAEVGEAPGQYVERIRTEAARRQLEETDDTVVA 286
Query 227 IAARCGFGTAETMRRSFIRRVGISPDQYRKAFA 259
IA RCGFGTAETMRR+F+RRVGI PDQYRKAFA
Sbjct 287 IATRCGFGTAETMRRNFLRRVGIPPDQYRKAFA 319
>gi|254775251|ref|ZP_05216767.1| hypothetical protein MaviaA2_11356 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=326
Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 138/270 (52%), Positives = 163/270 (61%), Gaps = 34/270 (12%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPS 66
PG P+DTV+LPGGAGVDAAR + LI W+KAV+G ARR+VTVCTGAFLAAEAGLL
Sbjct 74 PGRPIDTVVLPGGAGVDAARGDAELIAWIKAVAGRARRMVTVCTGAFLAAEAGLL----D 129
Query 67 DDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDCPD 126
+ F R++ D F D W+ AG D
Sbjct 130 GHRVTTHWAFADRLASEFPAVDVDADPIFVRSSDTLWTA--AGVTAGIDLALALVED-DH 186
Query 127 GCPLARPVS-----------APTRWADPV------RGSGVDATRQTDLDPPGAGGHRGRA 169
G +A+ V+ T++A PV R S + + +P
Sbjct 187 GTEVAQTVARWLVLYLRRPGGQTQFAAPVWMPRARRDSIREVQEIIEAEP---------- 236
Query 170 GGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAA 229
G H + ELA+RAAMSPRHFTRVF+ E+GEAPG+YVERIRTEAARRQL+ET DTVV IAA
Sbjct 237 GRPHTVDELARRAAMSPRHFTRVFTAEIGEAPGQYVERIRTEAARRQLQETDDTVVTIAA 296
Query 230 RCGFGTAETMRRSFIRRVGISPDQYRKAFA 259
RCGFGTAETMRR+FIRRVGISPDQYRKAFA
Sbjct 297 RCGFGTAETMRRNFIRRVGISPDQYRKAFA 326
>gi|336457410|gb|EGO36419.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=326
Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 138/270 (52%), Positives = 163/270 (61%), Gaps = 34/270 (12%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPS 66
PG P+DTV+LPGGAGVDAAR + LI W+KAV+G ARR+VTVCTGAFLAAEAGLL
Sbjct 74 PGRPIDTVVLPGGAGVDAARGDAELIAWIKAVAGRARRMVTVCTGAFLAAEAGLL----D 129
Query 67 DDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDCPD 126
+ F R++ D F D W+ AG D
Sbjct 130 GHRVTTHWAFADRLASEFPAVDVDADPIFVRSSDTLWTA--AGVTAGIDLALALVED-DH 186
Query 127 GCPLARPVS-----------APTRWADPV------RGSGVDATRQTDLDPPGAGGHRGRA 169
G +A+ V+ T++A PV R S + + +P
Sbjct 187 GTEVAQTVARWLVLYLRRPGGQTQFAAPVWMPRARRDSIREVQEIIEAEP---------- 236
Query 170 GGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAA 229
G H + ELA+RAAMSPRHFTRVF+ E+GEAPG+YVERIRTEAARRQL+ET DTVV IAA
Sbjct 237 GRPHTVDELARRAAMSPRHFTRVFTAEIGEAPGQYVERIRTEAARRQLQETDDTVVTIAA 296
Query 230 RCGFGTAETMRRSFIRRVGISPDQYRKAFA 259
RCGFGTAETMRR+FIRRVGISPDQYRKAFA
Sbjct 297 RCGFGTAETMRRNFIRRVGISPDQYRKAFA 326
>gi|240170190|ref|ZP_04748849.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
12478]
Length=316
Score = 211 bits (537), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 142/268 (53%), Positives = 163/268 (61%), Gaps = 30/268 (11%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLG--RT 64
P PVDTV+LPGGAGVDAAR L+DW+KAV+GTARR+VTVCTGAFLAA+AGLL R
Sbjct 64 PSAPVDTVLLPGGAGVDAARGNIELMDWIKAVAGTARRLVTVCTGAFLAAQAGLLDGRRA 123
Query 65 PSDDALG--LCRTF------RPRISGRSGRCRPDLHAQFAEGVDRGWS----HRRHRPRA 112
+ A L R F R I RS A G+D S R
Sbjct 124 TTHWAFADRLAREFPAVEVDRDPIFIRSSETLWT-AAGVTAGIDLALSLVEDDRGTEIAQ 182
Query 113 GTGRRRPRHRDCPDG-CPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGG 171
R + P G A PV P +R Q ++ G HR
Sbjct 183 TVARWLVLYLRRPGGQTQFAAPVWLPRAQRPTIRQV------QEAIETQPGGCHR----- 231
Query 172 AHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARC 231
I +LA+RAAMSPRHFTRVF+DEVGEAPG+YVER+RTEAARRQLEET DTVVAIAARC
Sbjct 232 ---IDDLARRAAMSPRHFTRVFTDEVGEAPGQYVERVRTEAARRQLEETDDTVVAIAARC 288
Query 232 GFGTAETMRRSFIRRVGISPDQYRKAFA 259
GFGTAET+RR+FIRR+GI PDQYRK+FA
Sbjct 289 GFGTAETLRRNFIRRIGIPPDQYRKSFA 316
>gi|41407750|ref|NP_960586.1| hypothetical protein MAP1652c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396103|gb|AAS03969.1| hypothetical protein MAP_1652c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=320
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 136/270 (51%), Positives = 161/270 (60%), Gaps = 34/270 (12%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPS 66
PG P+DTV+LPGGAGVDAAR + LI W+KAV+G ARR+VTVCTGAFLAAEAGLL
Sbjct 68 PGRPIDTVVLPGGAGVDAARGDAELIAWIKAVAGRARRMVTVCTGAFLAAEAGLL----D 123
Query 67 DDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDCPD 126
+ F R++ D F D W+ AG D
Sbjct 124 GHRVTTHWAFADRLASEFPAVDVDADPIFVRSSDTLWTA--AGVTAGIDLALALVED-DH 180
Query 127 GCPLARPVS-----------APTRWADPV------RGSGVDATRQTDLDPPGAGGHRGRA 169
G +A+ V+ T++A PV R S + + +P
Sbjct 181 GTEVAQTVARWLVLYLRRPGGQTQFAAPVWMPRARRDSIREVQEIIEAEP---------- 230
Query 170 GGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAA 229
G H + ELA+RAAMSPRHFTRVF+ E+GEAPG+YVERIRTEAARRQL+ET DTVV IAA
Sbjct 231 GRPHTVDELARRAAMSPRHFTRVFTAEIGEAPGQYVERIRTEAARRQLQETDDTVVTIAA 290
Query 230 RCGFGTAETMRRSFIRRVGISPDQYRKAFA 259
RCGFGTAETMRR+FIRRVGISPDQYR A A
Sbjct 291 RCGFGTAETMRRNFIRRVGISPDQYRNACA 320
>gi|126433352|ref|YP_001069043.1| AraC family transcriptional regulator [Mycobacterium sp. JLS]
gi|126233152|gb|ABN96552.1| transcriptional regulator, AraC family [Mycobacterium sp. JLS]
Length=321
Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 132/266 (50%), Positives = 151/266 (57%), Gaps = 28/266 (10%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPS 66
P P+DT++LPGG G A ++ LI WV+A + ARRVVTVCTGAFLAAEAGLL P+
Sbjct 68 PDTPLDTLVLPGGQGTQTAVADTELIAWVRAAAPHARRVVTVCTGAFLAAEAGLLDGCPA 127
Query 67 DDALGLCRTFRPRISGRSGRCRPDL---------HAQFAEGVDRGWS--HRRHRPRAG-- 113
F R + P A G+D + H A
Sbjct 128 TTHWAYADAFAKRYPAVAVDPDPIFIRSSPRVWTAAGVTAGIDLALALVEDDHGTEAAQT 187
Query 114 TGRRRPRHRDCPDG-CPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGA 172
R + P G A PV P P+R D + +P GGA
Sbjct 188 VARWLVMYLRRPGGQTQFAAPVWMPRAKRAPIR----DVQEAIEAEP----------GGA 233
Query 173 HRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCG 232
H I ELAQRAAMSPRHFTRVFS EVGEAPG YVER+RTEAARRQLEET DTV AIAARCG
Sbjct 234 HSIAELAQRAAMSPRHFTRVFSTEVGEAPGAYVERVRTEAARRQLEETDDTVTAIAARCG 293
Query 233 FGTAETMRRSFIRRVGISPDQYRKAF 258
FGTAETMRR+FIRR+G+SPD YRK F
Sbjct 294 FGTAETMRRNFIRRLGVSPDHYRKTF 319
>gi|108797726|ref|YP_637923.1| AraC family transcriptional regulator [Mycobacterium sp. MCS]
gi|119866815|ref|YP_936767.1| AraC family transcriptional regulator [Mycobacterium sp. KMS]
gi|108768145|gb|ABG06867.1| transcriptional regulator, AraC family [Mycobacterium sp. MCS]
gi|119692904|gb|ABL89977.1| transcriptional regulator, AraC family [Mycobacterium sp. KMS]
Length=321
Score = 204 bits (520), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 131/266 (50%), Positives = 151/266 (57%), Gaps = 28/266 (10%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPS 66
P P+DT++LPGG G A ++ LI WV+A + ARRVVTVCTGAFLAAEAGLL P+
Sbjct 68 PDTPLDTLVLPGGQGTQTAVADTELIAWVRAAAPHARRVVTVCTGAFLAAEAGLLDGCPA 127
Query 67 DDALGLCRTFRPRISGRSGRCRPDL---------HAQFAEGVDRGWS--HRRHRPRAG-- 113
F R + P A G+D + H A
Sbjct 128 TTHWAYADAFAKRYPAVAVDPDPIFIRSSPRVWTAAGVTAGIDLALALVEDDHGTEAAQT 187
Query 114 TGRRRPRHRDCPDG-CPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGA 172
R + P G A PV P P+R D + +P GGA
Sbjct 188 VARWLVMYLRRPGGQTQFAAPVWMPRAKRAPIR----DVQEAIEAEP----------GGA 233
Query 173 HRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCG 232
H I ELAQRAAMSPRHFTRVFS EVGEAPG YVER+RTEAARRQLEET DTV A+AARCG
Sbjct 234 HSIAELAQRAAMSPRHFTRVFSTEVGEAPGAYVERVRTEAARRQLEETDDTVTAVAARCG 293
Query 233 FGTAETMRRSFIRRVGISPDQYRKAF 258
FGTAETMRR+FIRR+G+SPD YRK F
Sbjct 294 FGTAETMRRNFIRRLGVSPDHYRKTF 319
>gi|315442451|ref|YP_004075330.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Mycobacterium sp. Spyr1]
gi|315260754|gb|ADT97495.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Mycobacterium sp. Spyr1]
Length=320
Score = 199 bits (505), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 127/270 (48%), Positives = 159/270 (59%), Gaps = 34/270 (12%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPS 66
PG P+DT++LPGG G DAAR + LIDW+ A++ ARRVV+VC+GA LAA+AGLL
Sbjct 68 PGHPIDTLVLPGGFGADAARRDDVLIDWITAIAPHARRVVSVCSGAVLAAQAGLL----- 122
Query 67 DDALGLCR-TFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDCP 125
D + + P ++ D F ++ W+ AG D
Sbjct 123 DGCVATTHWAYAPHMAVEFPSVTVDPDPIFVRSSEKVWTAAG--VTAGIDLALSLVED-D 179
Query 126 DGCPLARPVS-----------APTRWADPV-----RGSGVDATRQTDLDPPGAGGHRGRA 169
G LA+ V+ T++A PV R S + ++ PGA
Sbjct 180 HGTELAQTVARHLVMYLRRPGGQTQFAAPVWMPRARRSPIRDVQEVIESEPGA------- 232
Query 170 GGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAA 229
H I ELA+RAAMS RHFTRVF+DEVGEAPG YVER+RTEAARRQLEET DTV IAA
Sbjct 233 --VHSISELARRAAMSTRHFTRVFTDEVGEAPGAYVERVRTEAARRQLEETDDTVTVIAA 290
Query 230 RCGFGTAETMRRSFIRRVGISPDQYRKAFA 259
RCGFG+AET+RRSF+RR+G+SPDQYRK FA
Sbjct 291 RCGFGSAETLRRSFVRRLGVSPDQYRKTFA 320
>gi|145225841|ref|YP_001136519.1| AraC family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|145218327|gb|ABP47731.1| transcriptional regulator, AraC family with amidase-like domain
[Mycobacterium gilvum PYR-GCK]
Length=320
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 126/270 (47%), Positives = 158/270 (59%), Gaps = 34/270 (12%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPS 66
PG P+DT++LPGG G DAAR + LIDW+ A++ ARRVV+VC+GA LAA+AGLL
Sbjct 68 PGHPIDTLVLPGGFGADAARRDDVLIDWITAIAPHARRVVSVCSGAVLAAQAGLL----- 122
Query 67 DDALGLCR-TFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDCP 125
D + + P ++ D F ++ W+ AG D
Sbjct 123 DGCVATTHWAYAPHMAVEFPSVTVDPDPIFVRSSEKVWTAAG--VTAGIDLALSLVED-D 179
Query 126 DGCPLARPVS-----------APTRWADPV-----RGSGVDATRQTDLDPPGAGGHRGRA 169
G LA+ V+ T++A PV R S + ++ PGA
Sbjct 180 HGTELAQTVARHLVMYLRRPGGQTQFAAPVWMPRARRSPIRDVQEVIESEPGA------- 232
Query 170 GGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAA 229
H I ELA+RAAMS RHFTR F+DEVGEAPG YVER+RTEAARRQLEET DTV IAA
Sbjct 233 --VHSISELARRAAMSTRHFTRAFTDEVGEAPGAYVERVRTEAARRQLEETDDTVTVIAA 290
Query 230 RCGFGTAETMRRSFIRRVGISPDQYRKAFA 259
RCGFG+AET+RRSF+RR+G+SPDQYRK FA
Sbjct 291 RCGFGSAETLRRSFVRRLGVSPDQYRKTFA 320
>gi|118471063|ref|YP_885500.1| AraC family transcriptional regulator [Mycobacterium smegmatis
str. MC2 155]
gi|118172350|gb|ABK73246.1| transcriptional regulator, AraC family protein [Mycobacterium
smegmatis str. MC2 155]
Length=335
Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/270 (48%), Positives = 150/270 (56%), Gaps = 31/270 (11%)
Query 7 PGDP---VDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGR 63
P DP +DTV++PGG G D AR +++W+K + ARRVVTVCTGAFLAAEAGLL
Sbjct 76 PPDPCGDIDTVVIPGGIGADEARRNREVVNWIKTAADHARRVVTVCTGAFLAAEAGLLDG 135
Query 64 TPSDDALGLCR---------TFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGT 114
P+ R T P R A G+D S
Sbjct 136 CPATTHWASARRLADEFPSVTVDPEPIFMRSSERVWTAAGVTAGIDLALSLVEDDHGTDV 195
Query 115 GRRRPRHRDC----PDG-CPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRA 169
+ R P G A PV P P+R + DP
Sbjct 196 AQNVARWLVLYLRRPGGQTQFAAPVWMPRAKRAPIRA----VQEAIEADP---------- 241
Query 170 GGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAA 229
GGAH I +LAQRAAMSPRHFTRVF++EVG++PG YVERIR +AARRQLEE+ DTV AIAA
Sbjct 242 GGAHSISDLAQRAAMSPRHFTRVFTEEVGQSPGVYVERIRIDAARRQLEESDDTVTAIAA 301
Query 230 RCGFGTAETMRRSFIRRVGISPDQYRKAFA 259
RCGFGTAETMRR+FIRR+G+SPDQYRK A
Sbjct 302 RCGFGTAETMRRNFIRRLGVSPDQYRKTSA 331
>gi|120401987|ref|YP_951816.1| AraC family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119954805|gb|ABM11810.1| transcriptional regulator, AraC family with amidase-like domain
[Mycobacterium vanbaalenii PYR-1]
Length=336
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 126/272 (47%), Positives = 155/272 (57%), Gaps = 38/272 (13%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPS 66
P + VDTV+LPGG G D AR + LIDW+ A + ARRVV+VC GA LAA+AGLL
Sbjct 84 PDEAVDTVVLPGGWGADTARRDQVLIDWITAAAARARRVVSVCNGAVLAAQAGLL----- 138
Query 67 DDALGLCR-TFRPRISGR--SGRCRPD-----------LHAQFAEGVDRGWSHRRHRPRA 112
D + + P+++ S PD A G+D +
Sbjct 139 DGCVATTHWAYAPQLAAEFPSVTVDPDPIFVRSSEKVWTAAGVTAGIDLALALVEDDHGT 198
Query 113 GTGRRRPRHRDC----PDG-CPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRG 167
T + RH P G A PV P P+R D + +P
Sbjct 199 ETAQIVARHLVMYLRRPGGQTQFAAPVWMPRARRTPIR----DVQEAVEAEP-------- 246
Query 168 RAGGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAI 227
GGAH I ELA+ AAMSPRHFTRVF++EVGEAPG YVER+RTEAARRQLEET DTV I
Sbjct 247 --GGAHSIAELARLAAMSPRHFTRVFTEEVGEAPGAYVERVRTEAARRQLEETDDTVTVI 304
Query 228 AARCGFGTAETMRRSFIRRVGISPDQYRKAFA 259
AARCGFG+AET+RR+F+RR+G+SPDQYR+ FA
Sbjct 305 AARCGFGSAETLRRNFVRRLGVSPDQYRRTFA 336
>gi|296140202|ref|YP_003647445.1| AraC family transcriptional regulator [Tsukamurella paurometabola
DSM 20162]
gi|296028336|gb|ADG79106.1| transcriptional regulator, AraC family [Tsukamurella paurometabola
DSM 20162]
Length=327
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 119/259 (46%), Positives = 147/259 (57%), Gaps = 20/259 (7%)
Query 11 VDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPSDDAL 70
+DTV++PGG G + AR ++DW++AV ARRVV+VCTGAFL A+AGLL +
Sbjct 79 IDTVVIPGGPGAETARGSTEIVDWIRAVHQHARRVVSVCTGAFLLAQAGLLDGCRATTHW 138
Query 71 GL---CRTFRPRISGRSG--RCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDCP 125
G T P I R + GV G A G +
Sbjct 139 GSAARLATLYPAIDVDPDPIFVRSSEQIWTSAGVTAGIDLALALIEADHGTEAAQAVARG 198
Query 126 DGCPLARPVSAPTRWADPV-----RGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQ 180
PL RP T++A PV + V A +Q+ PGA AH I LA+
Sbjct 199 LVLPLRRP-GGQTQYAAPVWMPRAERAPVRAVQQSIETEPGA---------AHSITLLAR 248
Query 181 RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMR 240
RA MSPRHF+R+F+ EVGE+PG YVERIRTEAARRQLEET DTV IA RCGFG+AET+R
Sbjct 249 RAGMSPRHFSRIFTHEVGESPGLYVERIRTEAARRQLEETTDTVAVIAERCGFGSAETLR 308
Query 241 RSFIRRVGISPDQYRKAFA 259
R F RRVG SPD+YR++FA
Sbjct 309 RVFGRRVGTSPDRYRRSFA 327
>gi|118469488|ref|YP_887672.1| AraC family transcriptional regulator [Mycobacterium smegmatis
str. MC2 155]
gi|118170775|gb|ABK71671.1| transcriptional regulator, AraC family protein [Mycobacterium
smegmatis str. MC2 155]
Length=337
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 112/268 (42%), Positives = 141/268 (53%), Gaps = 36/268 (13%)
Query 9 DPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPSDD 68
+ VDTV++PGG GV A ++PAL+ W + + ARR+V+VCTGAFL AEAGLL +
Sbjct 87 EQVDTVVIPGGVGVRQAAADPALMTWFREAAEHARRIVSVCTGAFLVAEAGLLNGCQATT 146
Query 69 ALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWS------------------HRRHRP 110
F ++ R R D + F + W+ H
Sbjct 147 HWA----FADELAQRYPEVRVDPNPMFVRSSRQVWTAAGVSAGIDLALALVEDDHSTEVA 202
Query 111 RAGTGRRRPRHRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAG 170
+A R A P+ P D +R ++ P A
Sbjct 203 KAVARWLVLSLRRPGGQAQFAAPIWTPRARRDEIR-----LVQEVIEANPAA-------- 249
Query 171 GAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAAR 230
H I LA AAMS RHFTRVF+ EVGE PGRYV+R+RT+AARRQLEET DTV AIAAR
Sbjct 250 -PHTIDTLATSAAMSTRHFTRVFTSEVGEGPGRYVDRVRTQAARRQLEETTDTVAAIAAR 308
Query 231 CGFGTAETMRRSFIRRVGISPDQYRKAF 258
CGFGT ETMRR+FIR +G+SP+ YRKAF
Sbjct 309 CGFGTPETMRRNFIRLLGVSPEAYRKAF 336
>gi|343924458|ref|ZP_08764007.1| putative AraC family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
gi|343765602|dbj|GAA10933.1| putative AraC family transcriptional regulator [Gordonia alkanivorans
NBRC 16433]
Length=336
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 109/272 (41%), Positives = 148/272 (55%), Gaps = 40/272 (14%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLG--RT 64
P + VDT++LPGG GV A + LI+W++ + ARRV++VC GAFLAAEAGLL R
Sbjct 84 PAELVDTLLLPGGMGVHRAVDDAELIEWIREAATRARRVISVCNGAFLAAEAGLLDGRRA 143
Query 65 PSDDALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWS---------------HRRHR 109
+ A+ ++ R + D A F D W+ H
Sbjct 144 ATHWAMA------EHLAERYPTVQVDAEALFVRSSDHVWTSAGVTAGIDLALAVVEEDHG 197
Query 110 PRAG--TGRRRPRHRDCPDG-CPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHR 166
R + P G A PV P D +R DA ++ + +P
Sbjct 198 TELAQLVARWLVLYMRRPGGQSQFAPPVWMPRARRDVIR----DAQQRIEAEP------- 246
Query 167 GRAGGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVA 226
G HR+ +LAQ AAMSPRHF+RVF++E GE P Y+ER+RT+AARR L E+ DT+
Sbjct 247 ---GLPHRLHDLAQEAAMSPRHFSRVFTEETGEPPSDYIERVRTDAARRALTESSDTMPV 303
Query 227 IAARCGFGTAETMRRSFIRRVGISPDQYRKAF 258
IAARCGFG++E++RR+FIRR+G+SPD YRK F
Sbjct 304 IAARCGFGSSESLRRTFIRRLGVSPDHYRKTF 335
>gi|169628039|ref|YP_001701688.1| AraC family transcriptional regulator [Mycobacterium abscessus
ATCC 19977]
gi|169240006|emb|CAM61034.1| Putative transcriptional regulator, AraC family [Mycobacterium
abscessus]
Length=326
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/271 (45%), Positives = 151/271 (56%), Gaps = 48/271 (17%)
Query 12 DTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPSDDALG 71
DT++LPGG GV A + + AL+ WV+A + ARRVV+VC GAFLAAEAGLL
Sbjct 72 DTLLLPGGIGVSAVQRDAALMSWVRAAARGARRVVSVCNGAFLAAEAGLLDG-------- 123
Query 72 LCR-TFRPRISGRSGRCRPDLHAQ----FAEGVDRGWS------------------HRRH 108
CR T I+G+ P + F D+ W+ H
Sbjct 124 -CRATTHWAIAGQLASEFPSVTVDPDPIFIRSSDKTWTAAGVTAGIDLALALVEEDHGAE 182
Query 109 RPRAGTGRRRPRHRDCPDG-CPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRG 167
+A R + P G A PV P P+R D + +P
Sbjct 183 VAQA-VARWLVLYLRRPGGQSQFAAPVWMPRAKRMPIR----DVQEAIEAEP-------- 229
Query 168 RAGGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAI 227
G+HR+ ELA+ AAMSPRHFTRVF+ EVGEAP YVERIR+EAARRQLEET DT+V I
Sbjct 230 --SGSHRVPELARLAAMSPRHFTRVFTAEVGEAPSAYVERIRSEAARRQLEETDDTMVVI 287
Query 228 AARCGFGTAETMRRSFIRRVGISPDQYRKAF 258
A RCGFG+AE++RR+F+RR+G+SPDQYRK F
Sbjct 288 AGRCGFGSAESLRRNFVRRMGVSPDQYRKTF 318
>gi|167970555|ref|ZP_02552832.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Ra]
gi|254550947|ref|ZP_05141394.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|308402958|ref|ZP_07493666.2| putative transcriptional regulator, AraC family [Mycobacterium
tuberculosis SUMu012]
gi|308365858|gb|EFP54709.1| putative transcriptional regulator, AraC family [Mycobacterium
tuberculosis SUMu012]
Length=76
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/76 (100%), Positives = 76/76 (100%), Gaps = 0/76 (0%)
Query 184 MSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMRRSF 243
MSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMRRSF
Sbjct 1 MSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMRRSF 60
Query 244 IRRVGISPDQYRKAFA 259
IRRVGISPDQYRKAFA
Sbjct 61 IRRVGISPDQYRKAFA 76
>gi|333988868|ref|YP_004521482.1| AraC family transcriptional regulator [Mycobacterium sp. JDM601]
gi|333484836|gb|AEF34228.1| AraC family transcriptional regulatory protein [Mycobacterium
sp. JDM601]
Length=321
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/90 (84%), Positives = 81/90 (90%), Gaps = 0/90 (0%)
Query 170 GGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAA 229
GG HRI ELA RAAMSPRHFTRVF+DEVG APG YVE++RTEAARRQLEET DTVVAIA
Sbjct 232 GGPHRIPELAARAAMSPRHFTRVFTDEVGIAPGAYVEQVRTEAARRQLEETDDTVVAIAG 291
Query 230 RCGFGTAETMRRSFIRRVGISPDQYRKAFA 259
RCGFGTAET+RR+FIRR+GISPD YRK FA
Sbjct 292 RCGFGTAETLRRTFIRRLGISPDHYRKTFA 321
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/56 (63%), Positives = 45/56 (81%), Gaps = 0/56 (0%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLG 62
P +DTV+LPGGAGVDAAR++PA + W++ + RRVV+VCTGAFLAA+AGLL
Sbjct 69 PTSGLDTVVLPGGAGVDAARADPATVAWIRTAAAHCRRVVSVCTGAFLAAQAGLLN 124
>gi|291008754|ref|ZP_06566727.1| AraC family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
Length=310
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 98/255 (39%), Positives = 128/255 (51%), Gaps = 20/255 (7%)
Query 12 DTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLL-GRTPSDD-- 68
DT+++ GG G A +P ++D V+ ++G ARRV +VCTGAFL AEAGLL GR+ +
Sbjct 64 DTLVIAGGTGFADAVGDPEVVDHVRRLAGGARRVASVCTGAFLLAEAGLLRGRSATTHWA 123
Query 69 -ALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDCPDG 127
L RT+ D A GV G G R
Sbjct 124 YCAELARTYEDVTVLPDSIYVRDAPMLTAAGVTAGIDLALAMVEDDHGADVARTVAKWLV 183
Query 128 CPLARP--VSAPTRWAD--PVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQRAA 183
L RP S + W PVR +A R+ G G I +A+R +
Sbjct 184 VFLQRPGGQSQFSIWNQSRPVRD---EALREL------LGDIAAHPAGDLSITAMARRMS 234
Query 184 MSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMRRSF 243
MSPRHF+R+F+ EVG +PGRYVER R EAAR LE H +A RCGFG+AE+MRR+F
Sbjct 235 MSPRHFSRLFTREVGTSPGRYVERARVEAARSLLEAGHR---GVARRCGFGSAESMRRAF 291
Query 244 IRRVGISPDQYRKAF 258
+R +G+ P YR F
Sbjct 292 LRELGVPPAAYRDRF 306
>gi|302528640|ref|ZP_07280982.1| transcriptional regulator [Streptomyces sp. AA4]
gi|302437535|gb|EFL09351.1| transcriptional regulator [Streptomyces sp. AA4]
Length=332
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/263 (37%), Positives = 127/263 (49%), Gaps = 27/263 (10%)
Query 10 PVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPSDDA 69
PVDTV++PG A + P L+D ++ + TARRV +VCTGAFL AEAGLL +
Sbjct 82 PVDTVLVPGPPPGQADETAPDLLDGIRRLGETARRVASVCTGAFLLAEAGLLEGRQATTH 141
Query 70 LGLCRTFRPRISGRSGRCRPD----------LHAQFAEGVDRGWSHRRHRPRAGTGRRRP 119
+C R G + RPD A G+D + R
Sbjct 142 WAMCAELAARFPGVA--VRPDAIYTRDGRIVTSAGVTAGIDLALALVEEDLGPDVARDAA 199
Query 120 RHRDCPDGCPLARP--VSAPTRWAD-PVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIG 176
R L RP S + W+D PV + + LD A G H +
Sbjct 200 RQL----VVFLRRPGGQSQFSVWSDVPVPKT---PALRVVLDSVAA-----EPAGDHTLS 247
Query 177 ELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTA 236
+A RA +S R TR+F E+G PG+YV RIR EAAR LE V +A RCGFG+A
Sbjct 248 GMAARARVSVRQLTRLFQQELGVTPGQYVARIRVEAARVLLESCDAGVETVARRCGFGSA 307
Query 237 ETMRRSFIRRVGISPDQYRKAFA 259
E+MRR F++ +GI+P YR+ FA
Sbjct 308 ESMRRLFVQVLGITPTAYRQRFA 330
>gi|134102854|ref|YP_001108515.1| AraC family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|133915477|emb|CAM05590.1| transcriptional regulator, AraC family [Saccharopolyspora erythraea
NRRL 2338]
Length=277
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/255 (39%), Positives = 128/255 (51%), Gaps = 20/255 (7%)
Query 12 DTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLL-GRTPSDD-- 68
DT+++ GG G A +P ++D V+ ++G ARRV +VCTGAFL AEAGLL GR+ +
Sbjct 31 DTLVIAGGTGFADAVGDPEVVDHVRRLAGGARRVASVCTGAFLLAEAGLLRGRSATTHWA 90
Query 69 -ALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDCPDG 127
L RT+ D A GV G G R
Sbjct 91 YCAELARTYEDVTVLPDSIYVRDAPMLTAAGVTAGIDLALAMVEDDHGADVARTVAKWLV 150
Query 128 CPLARP--VSAPTRWAD--PVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQRAA 183
L RP S + W PVR +A R+ G G I +A+R +
Sbjct 151 VFLQRPGGQSQFSIWNQSRPVRD---EALREL------LGDIAAHPAGDLSITAMARRMS 201
Query 184 MSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMRRSF 243
MSPRHF+R+F+ EVG +PGRYVER R EAAR LE H +A RCGFG+AE+MRR+F
Sbjct 202 MSPRHFSRLFTREVGTSPGRYVERARVEAARSLLEAGHR---GVARRCGFGSAESMRRAF 258
Query 244 IRRVGISPDQYRKAF 258
+R +G+ P YR F
Sbjct 259 LRELGVPPAAYRDRF 273
>gi|262204277|ref|YP_003275485.1| AraC family transcriptional regulator [Gordonia bronchialis DSM
43247]
gi|262087624|gb|ACY23592.1| helix-turn-helix- domain containing protein AraC type [Gordonia
bronchialis DSM 43247]
Length=227
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/88 (65%), Positives = 72/88 (82%), Gaps = 0/88 (0%)
Query 170 GGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAA 229
AHRI +LA A+MSPRHFTRVF++EVGE PG YVER+RT+ ARR LEE D + A+A+
Sbjct 138 AAAHRIADLATIASMSPRHFTRVFTEEVGEPPGVYVERVRTDTARRFLEEIDDPMPAVAS 197
Query 230 RCGFGTAETMRRSFIRRVGISPDQYRKA 257
R GFG+AETMRR F+RR+ ISPD+YR++
Sbjct 198 RAGFGSAETMRRVFVRRLAISPDRYRRS 225
>gi|54024338|ref|YP_118580.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54015846|dbj|BAD57216.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=314
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/258 (37%), Positives = 130/258 (51%), Gaps = 23/258 (8%)
Query 11 VDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLL-GRTPSDDA 69
+DT+++PG A D R + L+ V A++G ARRV VCTGAF+ AEAGLL GR +
Sbjct 67 IDTLLVPGFAPDD--RPDSRLVAAVGALAGRARRVAAVCTGAFVLAEAGLLDGRRATTHW 124
Query 70 LG---LCRTFRPRISGRSGRCRP-DLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDCP 125
+G L R F PR++ + D + GV G G+ R
Sbjct 125 MGCGELARRF-PRVAVQPDAIYVRDGGVVTSAGVTAGIDMALALVEEDQGQELARTVAKQ 183
Query 126 DGCPLARP-----VSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQ 180
L RP S + A P R GV A + P G H + LA
Sbjct 184 LVVFLRRPGGQSQFSVRAQIAGP-RADGVRAVVDAVIADPA---------GDHSLPALAA 233
Query 181 RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMR 240
RAAMS RH +R+F E+G PGR+VER R EAA+ LE + D + +A RCG G+ ET+R
Sbjct 234 RAAMSERHLSRLFRRELGTTPGRFVERARVEAAQHLLEASTDPIPVVARRCGLGSEETLR 293
Query 241 RSFIRRVGISPDQYRKAF 258
R+F++ +G++P YR F
Sbjct 294 RTFVKVLGVTPSDYRARF 311
>gi|297155908|gb|ADI05620.1| hypothetical protein SBI_02499 [Streptomyces bingchenggensis
BCW-1]
Length=322
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/256 (37%), Positives = 117/256 (46%), Gaps = 17/256 (6%)
Query 11 VDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPSDDAL 70
+DT+++ GG GVD AR +P LI W+ A + ARR+ +VC+G FL A AGL+
Sbjct 69 IDTLVVAGGQGVDRARHDPELIGWIAAAAAGARRITSVCSGVFLLAAAGLVDGLRVTTHW 128
Query 71 GLCRTFRPRISGRSGRCRP----DLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDCPD 126
G C P D + GV G A GR
Sbjct 129 GRAEQLVREHPEVRVDCDPIFVRDGRVWTSAGVTAGMDLALALVEADLGREAAHTVAREL 188
Query 127 GCPLARPVSAPT----RWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQRA 182
L RP S WA A TD G G H + +LA A
Sbjct 189 VLFLRRPGSQSQFSVGLWA---------AQPATDSIRAVVSAIHGDPGARHTVADLAGCA 239
Query 183 AMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMRRS 242
+S RH R F+ E+G P YVER+R EAA+R L E D V AIA R GFGTAET+RR+
Sbjct 240 GLSTRHLQRRFTAELGTPPAVYVERVRVEAAQRALVEGDDPVEAIARRYGFGTAETLRRA 299
Query 243 FIRRVGISPDQYRKAF 258
F R G+SP +YR+ F
Sbjct 300 FHRHAGVSPSEYRERF 315
>gi|149923867|ref|ZP_01912256.1| transcriptional regulator, AraC family protein [Plesiocystis
pacifica SIR-1]
gi|149815268|gb|EDM74814.1| transcriptional regulator, AraC family protein [Plesiocystis
pacifica SIR-1]
Length=334
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/276 (33%), Positives = 128/276 (47%), Gaps = 55/276 (19%)
Query 10 PVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLL-GRTPSDD 68
P+DTV++ G EPA++ W++ + ARRV ++CTGAF+ AEAGLL GR +
Sbjct 81 PLDTVLVGGAPEFIERTFEPAILRWLRRRAARARRVASICTGAFVLAEAGLLDGRRATTH 140
Query 69 ALGL--CRTFRPRISGRS------------------------GRCRPDLHAQFAEGVDRG 102
+ R P ++ + DL + A V +G
Sbjct 141 WMATEQLRARFPEVTVEADALYVEDGPIHSSAGVTAGIDLALALVERDLGHEAALAVAQG 200
Query 103 WSHRRHRPRAGTGRRRPRHRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGA 162
HRP + + P PL R VR ++
Sbjct 201 LVMFLHRPGGQSQFSAALKQPTPSHAPLRR-----------VRAEVLE------------ 237
Query 163 GGHRGRAGGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHD 222
R G HR+ LA+RA MSPRHF RVF+++ GE P R+V+R+R E AR LE+
Sbjct 238 -----RPAGDHRVEGLARRAGMSPRHFARVFAEQTGETPARFVQRVRVERARSLLEQGGL 292
Query 223 TVVAIAARCGFGTAETMRRSFIRRVGISPDQYRKAF 258
V A+A + GFG+AETMRR+F+R +G+ P YR F
Sbjct 293 GVDAVAEQVGFGSAETMRRAFMRVLGVGPSSYRARF 328
>gi|302547988|ref|ZP_07300330.1| transcriptional regulator DarR [Streptomyces hygroscopicus ATCC
53653]
gi|302465606|gb|EFL28699.1| transcriptional regulator DarR [Streptomyces himastatinicus ATCC
53653]
Length=302
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/267 (37%), Positives = 121/267 (46%), Gaps = 38/267 (14%)
Query 11 VDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEA----GLLGRTPS 66
+DT+++ GG GVD AR +P L W+ + ARRV +VC+G FL A A GL T
Sbjct 48 IDTLVVAGGTGVDRARHDPELTGWIADAAAGARRVASVCSGVFLLAAAGLVDGLRVTTHW 107
Query 67 DDALGLCRTF------RPRISGRSGRCRP--------DLHAQFAEG-VDRGWSHRRHRPR 111
A L R R I R GR DL E + R +H R
Sbjct 108 ARAEQLAREHPGVRVDRDPIFIRDGRVWTSAGVTAGMDLALALVEADLGREVAHAVAREL 167
Query 112 AGTGRRRPRHRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGG 171
RR G A+P + R V + D PG
Sbjct 168 VLFLRRPGGQSQFSVGLWSAQPATDSLR--------AVVSAIHADPRAPG---------- 209
Query 172 AHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARC 231
H I ELA A +SPRH R F+ E+G P YVER+R EAA+R L D V AIA R
Sbjct 210 -HGIAELAACAGLSPRHLQRRFTAELGTPPATYVERVRVEAAQRALAGGDDPVEAIARRY 268
Query 232 GFGTAETMRRSFIRRVGISPDQYRKAF 258
GFGTAET+RR+F R VG++P YR F
Sbjct 269 GFGTAETLRRAFHRHVGVAPSDYRDRF 295
>gi|116049802|ref|YP_791391.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
gi|296389757|ref|ZP_06879232.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
gi|313110551|ref|ZP_07796436.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
gi|115585023|gb|ABJ11038.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
gi|310882938|gb|EFQ41532.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
gi|334845895|gb|EGM24453.1| putative transcriptional regulator [Pseudomonas aeruginosa 152504]
Length=334
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/272 (31%), Positives = 123/272 (46%), Gaps = 34/272 (12%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPS 66
P + +DT+++PGG GV+A L+ W+KA RR+ +VC+GA + A AG+L P+
Sbjct 73 PPESLDTLLVPGGLGVEAQTRNADLLAWLKAAEPRIRRLGSVCSGALILAAAGVLDGHPA 132
Query 67 DDALGLCRTFRP----------RISGRSGRCRP-DLHAQFAEGVDRGWSHRRHRPRAGTG 115
T R R+ +CR D H + GV G A G
Sbjct 133 TTHWADVATLRQGFPGVHVQGDRLHTYDPQCRDGDAHIFTSAGVTAGIDLALALVEADLG 192
Query 116 RRRPRHRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHR--------- 166
R + +S R ++ G A L P + R
Sbjct 193 R--------------SLALSVARRLVMFLKRPGGQAQFSAWLTPEPSRTPRLAALLEWIP 238
Query 167 GRAGGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVA 226
G + LA RA MSPR +RVF E+G APGRYVER+R EAAR L++ ++
Sbjct 239 ANLAGDLSLEALADRACMSPRTLSRVFLQELGVAPGRYVERVRLEAARALLQDAQASIAT 298
Query 227 IAARCGFGTAETMRRSFIRRVGISPDQYRKAF 258
++ CGFG E +RR+F + + +SP +Y + F
Sbjct 299 VSRLCGFGHPENLRRTFHKHLSVSPQEYAERF 330
>gi|290955861|ref|YP_003487043.1| transcriptional regulator [Streptomyces scabiei 87.22]
gi|260645387|emb|CBG68473.1| putative transcriptional regulator [Streptomyces scabiei 87.22]
Length=319
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/259 (35%), Positives = 122/259 (48%), Gaps = 29/259 (11%)
Query 13 TVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPSDDALGL 72
T+++PGG G P ++ W++A A R+V+VCTGA L AEAGLL +
Sbjct 69 TLLVPGGHGTR--NPAPEIVAWLRAHGPRATRLVSVCTGAVLLAEAGLLDGRRATTHWAY 126
Query 73 CRTFRPRISGRSGRCRP----DLHAQFAEGVDRGWSHRRHRPRAGTGRRRP----RH--- 121
C T R P D H + GV G GR RH
Sbjct 127 CDTLARRHPAVEVDPDPIFVRDGHIATSAGVTSGIDLALALVEEDIGREAALAIARHLVV 186
Query 122 --RDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELA 179
R + + ++A T +P+R +Q + PG + LA
Sbjct 187 FLRRPGNQAQFSAQLAAQTAQREPLR-----EVQQWITEHPGDD---------LSVERLA 232
Query 180 QRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETM 239
RA +SPRHF R F E G PGRYV+R+R E ARR LE+T D V I+ CG+GT+E M
Sbjct 233 ARARLSPRHFARAFQAETGTTPGRYVDRVRLEHARRLLEDTADGVEEISRACGYGTSEAM 292
Query 240 RRSFIRRVGISPDQYRKAF 258
RR+F++ +G SP +YR+ F
Sbjct 293 RRAFVKALGTSPAEYRRRF 311
>gi|312960026|ref|ZP_07774539.1| transcriptional regulator, AraC family [Pseudomonas fluorescens
WH6]
gi|311285683|gb|EFQ64251.1| transcriptional regulator, AraC family [Pseudomonas fluorescens
WH6]
Length=330
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/265 (31%), Positives = 118/265 (45%), Gaps = 32/265 (12%)
Query 10 PVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPSDDA 69
P DT+++ GG GV A + AL+DWV+ + RR+ +VCTGAFL A +G+L
Sbjct 80 PCDTLVIAGGWGVYGAAEDLALVDWVREKARYTRRMTSVCTGAFLLAASGMLDGCRVATH 139
Query 70 LGLCRTFRPRISGRSGRCRPDLHAQ--------FAEGVDRGWSHRRHRPRAGTGRRRPRH 121
C + + P Q G+D + RH
Sbjct 140 WTRCEELARKFPALTVESNPIFIQQGGVWTSAGVTAGIDLCLALVEEDLGRAVALEVARH 199
Query 122 RDCPDGCPLARP-------VSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHR 174
L RP V+ P + +D R + + A +L+
Sbjct 200 L----VVFLKRPGGQSQFSVTLPLQKSDS-RFAELHAWIAENLNLE------------LN 242
Query 175 IGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFG 234
I LA +A MS R F R + E G+ P R VE IR E ARRQL ++H + IA +CGFG
Sbjct 243 IATLAAQAGMSERSFVRHYRAETGQTPARAVELIRVETARRQLADSHTPIKRIAVQCGFG 302
Query 235 TAETMRRSFIRRVGISPDQYRKAFA 259
ET+RRSF+R + ++P YR+ F+
Sbjct 303 CEETLRRSFLRALSVTPQAYRERFS 327
>gi|163792814|ref|ZP_02186791.1| Helix-turn-helix, AraC type:ThiJ/PfpI [alpha proteobacterium
BAL199]
gi|159182519|gb|EDP67028.1| Helix-turn-helix, AraC type:ThiJ/PfpI [alpha proteobacterium
BAL199]
Length=360
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/260 (36%), Positives = 134/260 (52%), Gaps = 21/260 (8%)
Query 9 DPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLL-GR---T 64
+ DT+++ GG G R +P+L+ W++ +G+ RRV +VCTGAF+ AEAG+L GR T
Sbjct 103 ESYDTILVAGGVGARDVRPDPSLLAWLRRAAGSVRRVGSVCTGAFVLAEAGVLDGRRATT 162
Query 65 PSDDALGLCRTFRPRISGRSGRCRPD---LHAQ---FAEGVDRGWSHRRHRPRAGTGRRR 118
A L + P I R PD +H + GV G GRR
Sbjct 163 HWRHADHLAARY-PEI-----RVEPDRIYVHDSGIWTSAGVTSGMDMALAMIADDLGRRA 216
Query 119 PRHRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGEL 178
+ RP ++++ + D R L G + + EL
Sbjct 217 ALELAKSKVMYMHRP-GGQSQFSAELALQTADEPRLAKLQ----GWVFDNLSSSLTVEEL 271
Query 179 AQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAET 238
A+RAAMSPR+F RVF+ +G +P R+VER R +AARR+LE + ++ +A GFG AE
Sbjct 272 AERAAMSPRNFNRVFTRSIGVSPARFVERARVDAARRRLEGSGSSIETVAHDTGFGNAER 331
Query 239 MRRSFIRRVGISPDQYRKAF 258
MRRSF+R++GI+P YR+ F
Sbjct 332 MRRSFLRQIGIAPSDYRQRF 351
>gi|262204457|ref|YP_003275665.1| thiJ/PfpI domain-containing protein [Gordonia bronchialis DSM
43247]
gi|262087804|gb|ACY23772.1| ThiJ/PfpI domain protein [Gordonia bronchialis DSM 43247]
Length=334
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 95/265 (36%), Positives = 128/265 (49%), Gaps = 39/265 (14%)
Query 10 PVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGR----TP 65
P+DT+++ GG G A ++ L+ V + +RRV +VCTGA + A AGLL T
Sbjct 80 PIDTLVVSGGIGYVDAMADDHLLAHVGRLGRLSRRVASVCTGAGILAGAGLLDNRRAATH 139
Query 66 SDDALGLCR-----TFRPR-ISGRSGRCRP--------DLHAQFAEGVDRGWSHRRHRPR 111
A L R TF P I R G DL F E D G + R R
Sbjct 140 WRHAAYLTRRFPAVTFDPVPIFIRDGDTYTSAGVTSAIDLTLSFIEA-DAGPALARDVAR 198
Query 112 -AGTGRRRPRHRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAG 170
T +RP ++ ++ +AP PVR T D D A
Sbjct 199 DLVTYLQRPGNQ-----AQMSVFTTAPAPTHSPVRHVIDHITAHLDADLSTA-------- 245
Query 171 GAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAAR 230
LA RA +S RH TR+F+DE+G +PG++V RIR E+A L ET T+ A+A R
Sbjct 246 ------ILAHRAGLSERHLTRMFNDEIGLSPGKFVRRIRAESAATLLVETDLTIAAVARR 299
Query 231 CGFGTAETMRRSFIRRVGISPDQYR 255
CGFGTAE +R+SFI G++P +YR
Sbjct 300 CGFGTAEALRQSFIATYGVAPSRYR 324
>gi|152987949|ref|YP_001348802.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
gi|150963107|gb|ABR85132.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
Length=334
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/272 (32%), Positives = 125/272 (46%), Gaps = 34/272 (12%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLL-GRTP 65
P + +DT+++PGG GV+ L+ W+KA RR+ +VC+GA + A AG+L GR
Sbjct 73 PPESLDTLLIPGGLGVETQTRNADLLAWLKAAEPRIRRLGSVCSGALILAAAGVLDGRLA 132
Query 66 SD---DALGLCRTFR------PRISGRSGRCRP-DLHAQFAEGVDRGWSHRRHRPRAGTG 115
+ D L + F R+ +CR D H + GV G A G
Sbjct 133 TTHWADVATLRQGFPGVHVQGDRLHTYDPQCRDGDAHIFTSAGVTAGIDLALALVEADLG 192
Query 116 RRRPRHRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHR--------- 166
R + +S R ++ G A L P + R
Sbjct 193 R--------------SLALSVARRLVMFLKRPGGQAQFSAWLTPEPSRTPRLAALLEWIP 238
Query 167 GRAGGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVA 226
G + LA RA MSPR +RVF E+G APGRYVER+R EAAR L++ ++
Sbjct 239 ANLAGDLSLEALADRACMSPRTLSRVFLQELGVAPGRYVERVRLEAARALLQDAQASIAT 298
Query 227 IAARCGFGTAETMRRSFIRRVGISPDQYRKAF 258
++ CGFG E +RR+F + + +SP +Y + F
Sbjct 299 VSRLCGFGHPENLRRTFHKHLSVSPQEYAERF 330
>gi|319796377|ref|YP_004158017.1| AraC family transcriptional regulator [Variovorax paradoxus EPS]
gi|315598840|gb|ADU39906.1| transcriptional regulator, AraC family [Variovorax paradoxus
EPS]
Length=325
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/268 (32%), Positives = 124/268 (47%), Gaps = 35/268 (13%)
Query 9 DPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLG--RTPS 66
+P+ T+++ G A S + W++ ++ ARR +VC+GAF+ A+AGLL R +
Sbjct 72 EPIHTLLVAGTPHAATAASNLDVTAWLRKLTPKARRFGSVCSGAFVLAQAGLLNGRRVTT 131
Query 67 DDALG--LCRTF------RPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRR 118
A+ L + F I R GR R A GV G GR
Sbjct 132 HWAVADQLAQAFPAVQVDADAIHVRDGRLRT------AAGVTAGLDLSLALVEEDLGRE- 184
Query 119 PRHRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHR-------GRAGG 171
+A V+A G + +R+ + P G +
Sbjct 185 -----------IAMKVAAQLVMFFKRPGGQMQFSRKGEAAPTGRSALQEVQRWIAANPAE 233
Query 172 AHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARC 231
H + LA R ++SPRHF R+F+ EVG P +VE IR AARR LE +AA+C
Sbjct 234 DHSVAHLAGRMSLSPRHFARLFTQEVGATPAAWVEGIRVSAARRLLEAGDAASKQVAAQC 293
Query 232 GFGTAETMRRSFIRRVGISPDQYRKAFA 259
GF A+T+RR+F R++GI+P +YRK +A
Sbjct 294 GFADADTLRRAFQRQIGITPAEYRKRYA 321
>gi|300311850|ref|YP_003775942.1| AraC family transcription regulator protein [Herbaspirillum seropedicae
SmR1]
gi|300074635|gb|ADJ64034.1| AraC family transcription regulator protein [Herbaspirillum seropedicae
SmR1]
Length=343
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/263 (34%), Positives = 124/263 (48%), Gaps = 29/263 (11%)
Query 11 VDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLG----RTPS 66
+ T+I PGG+ D + AL+ W++ + A R+ +VCTGAF AEAG+L T
Sbjct 80 LHTLISPGGSSGDQFPLDAALVAWIRQHAQAAVRICSVCTGAFHLAEAGVLDGLRVTTHW 139
Query 67 DDALGLCRTFRPR------ISGRSGRCRPDLHAQFAEGVDRGWSHRR----HRPRAGTGR 116
D A L R + I R GR A G+D + H T R
Sbjct 140 DWAQELQRRYPALQVDADPIYIRQGRIWTS--AGVTAGIDLALALVEQDLGHASAIATAR 197
Query 117 RRPRHRDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIG 176
+ P G ++++ P+ A R +L A A H +
Sbjct 198 QLVMFIKRPGG---------QSQFSTPLATQSTGAGRFAELHAWIAAH---LADDLH-VE 244
Query 177 ELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTA 236
LA RA MSPR F R++ E G P R VE +R EAARR LEET + IA++ G+G
Sbjct 245 NLAHRAGMSPRTFARLYVAETGRTPARTVELMRLEAARRALEETRLPLKRIASQAGYGEE 304
Query 237 ETMRRSFIRRVGISPDQYRKAFA 259
+ +RR F+R++G+SP QYR+ FA
Sbjct 305 QNLRRVFLRQLGVSPGQYRERFA 327
>gi|333990643|ref|YP_004523257.1| transcriptional regulator [Mycobacterium sp. JDM601]
gi|333486611|gb|AEF36003.1| transcriptional regulatory protein [Mycobacterium sp. JDM601]
Length=324
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/274 (33%), Positives = 124/274 (46%), Gaps = 50/274 (18%)
Query 9 DPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLL-GR---T 64
D DTV++ G + +P L+D V++V+ RR+ ++CTG+F+ A+AG+L GR T
Sbjct 71 DSADTVMVAGSDLLPRRAIDPQLVDAVRSVASRTRRLASICTGSFILAQAGMLSGRRATT 130
Query 65 PSDDALGLCRTFRPRISGRSGRCRPD----------LHAQFAEGVDRGWSHRRHRPRAGT 114
DA L R F P ++ PD A + G+D +
Sbjct 131 HWHDAPLLARAF-PDVT-----VEPDAIFIRDGDVFTSAGVSAGIDLALALV-------- 176
Query 115 GRRRPRHRDCPDGCPLARPVSAPTRWADPVR---GSGVDATRQTDLDPPGAGGHRG---- 167
+ G L R V+ RW G + + PP R
Sbjct 177 --------EMDYGSELVREVA---RWLVVYLKRAGGQSQFSVLVEAHPPQQSALRAVTDA 225
Query 168 ---RAGGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTV 224
H + LA RAA+S R TR+F E+G P RYVE++R +AAR L+ H +V
Sbjct 226 IAADPAADHSVNSLAVRAALSKRQLTRLFQSELGTTPARYVEKVRVDAARAALDAGH-SV 284
Query 225 VAIAARCGFGTAETMRRSFIRRVGISPDQYRKAF 258
A R GFG+AET+RR FI R G+SP YR F
Sbjct 285 ADSAGRAGFGSAETLRRVFIDRFGVSPKAYRDRF 318
>gi|220922265|ref|YP_002497567.1| AraC family transcriptional regulator [Methylobacterium nodulans
ORS 2060]
gi|219946872|gb|ACL57264.1| transcriptional regulator, AraC family [Methylobacterium nodulans
ORS 2060]
Length=328
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/262 (33%), Positives = 121/262 (47%), Gaps = 35/262 (13%)
Query 12 DTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLL-GR---TPSD 67
DT+++ G + +++ AL W+ + + +RR +VC+GAFL +AGLL GR T
Sbjct 77 DTLLVAGAPRIHELQADAALCAWLASAALKSRRYGSVCSGAFLLGQAGLLQGRRVTTHWA 136
Query 68 DALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDCPDG 127
A L R + + C D + A GV G D G
Sbjct 137 VADSLARRYPEAVVDGDAICLFDGPVRTAAGVTAGLDLALALV------------DEDLG 184
Query 128 CPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAG-------------GAHR 174
+AR V++ RG G Q G G GR+ H
Sbjct 185 SEVARRVASQLVMYFK-RGGG-----QMQFSRRGVGAPAGRSALQEVQRWVAAHPAADHG 238
Query 175 IGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFG 234
+ +LA RA MSPRHF R+F E G P +VE +R EAARR LEE +A CGF
Sbjct 239 VAKLAARAGMSPRHFARLFRAETGLTPATFVENVRIEAARRLLEEGKAASKQVAGACGFH 298
Query 235 TAETMRRSFIRRVGISPDQYRK 256
A+T+RR+F+RR+G++P +YR+
Sbjct 299 DADTLRRAFVRRIGLTPAEYRQ 320
>gi|320007275|gb|ADW02125.1| transcriptional regulator, AraC family [Streptomyces flavogriseus
ATCC 33331]
Length=318
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 90/262 (35%), Positives = 121/262 (47%), Gaps = 33/262 (12%)
Query 12 DTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPSDDALG 71
D +++PGGAG +P L+DW++A AR++V+VCTGA L A AG L
Sbjct 70 DLLLVPGGAGTRT--PDPELVDWLRAHGPRARQLVSVCTGALLLAAAGQLDGHRVTTHWS 127
Query 72 LCRTFRPR----------ISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRH 121
+C T I R GR A G+D + RH
Sbjct 128 VCETLARTYPAVRVDPDPIFVRDGRLATS--AGVTAGIDLALALVEEEHGRDVALTVARH 185
Query 122 -----RDCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIG 176
R + + +SA T P+RG T D D +
Sbjct 186 LVVFLRRPGNQAQFSAQLSAQTAVRAPLRGVQHWITEHPDAD--------------LSVE 231
Query 177 ELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTA 236
LA RA +SPRHF R F+ E G PGRYVER+R E ARR LE+T D VV I+ G+GT
Sbjct 232 ALAARAGLSPRHFARAFTAETGLTPGRYVERVRLEQARRLLEDTADGVVGISRASGYGTP 291
Query 237 ETMRRSFIRRVGISPDQYRKAF 258
E MRR+F++ +G +P +YR+ F
Sbjct 292 EAMRRAFVKALGTAPAEYRRRF 313
>gi|152970261|ref|YP_001335370.1| putative helix-turn-helix, AraC type [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|330006117|ref|ZP_08305516.1| transcriptional regulator, AraC family [Klebsiella sp. MS 92-3]
gi|150955110|gb|ABR77140.1| putative Helix-turn-helix, AraC type [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|328535933|gb|EGF62355.1| transcriptional regulator, AraC family [Klebsiella sp. MS 92-3]
Length=326
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/258 (30%), Positives = 123/258 (48%), Gaps = 15/258 (5%)
Query 7 PGDPVDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPS 66
P +P+DT+++ G + A++DW++ + ARR+V++C GA L A+ GLL +
Sbjct 72 PREPLDTIMITGRG--QNPQEGMAVVDWLRLAAPHARRIVSICGGAMLLAQTGLLDGRRA 129
Query 67 DDALGLCRTFR---PRISGRSGRCR-PDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHR 122
L T + P+I G D H + GV G+ G R
Sbjct 130 TTHWKLLETMQAEFPQIRVEGGPLYIQDEHIWTSGGVSSGFDLTLALVEEDYGFSLARDI 189
Query 123 DCPDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPG--AGGHRGRAGGAHRIGELAQ 180
L RP ++ S + + P + +LA+
Sbjct 190 AQDFVMYLRRP-------GGQLQFSRYNLQQTATQGPINDLLAWLLENLTADLSVDKLAE 242
Query 181 RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMR 240
+ AMSPR+FTRVF+ E G +P RYV R AAR++LE+TH+T+ IA + GFG++ +R
Sbjct 243 KVAMSPRNFTRVFTRETGASPARYVAEARLAAARQRLEQTHETLDRIAEQTGFGSSINLR 302
Query 241 RSFIRRVGISPDQYRKAF 258
R F +++ ++P +YR+ F
Sbjct 303 RLFEKQLNLTPGEYRQRF 320
>gi|218529467|ref|YP_002420283.1| AraC family transcriptional regulator [Methylobacterium chloromethanicum
CM4]
gi|218521770|gb|ACK82355.1| transcriptional regulator, AraC family [Methylobacterium chloromethanicum
CM4]
Length=321
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/256 (32%), Positives = 115/256 (45%), Gaps = 23/256 (8%)
Query 12 DTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLL-GRTPSDD-- 68
DT+++ G + + L+ W+ V+ +RR +VC+GAFL +AGLL GR +
Sbjct 73 DTLLVAGAPRIHELDLQADLLAWLGQVAKHSRRYGSVCSGAFLLGQAGLLNGRRATTHWA 132
Query 69 -ALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDCPDG 127
A L + + C D + A GV G G
Sbjct 133 VADALAARYPEALIEPDAICLFDGKLRTAAGVTAGLDLALALVEEDLG------------ 180
Query 128 CPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHR-------GRAGGAHRIGELAQ 180
+AR V+A G + +R+ P G + H IG LA+
Sbjct 181 AEIARQVAAQLVMFFKRGGGQMQFSRRGLSAPVGRSALQEVQRWVAAHPADNHSIGRLAE 240
Query 181 RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMR 240
RA MSPRHF R+F E G P YVE +R EA RR LE + +A CGF ++T+R
Sbjct 241 RAGMSPRHFARLFRIETGLTPAAYVENVRIEAVRRLLERDDVALKQVAGACGFRDSDTLR 300
Query 241 RSFIRRVGISPDQYRK 256
R+F+RRVG +P +YR+
Sbjct 301 RAFVRRVGTTPAEYRR 316
>gi|254560389|ref|YP_003067484.1| AraC family transcriptional regulator [Methylobacterium extorquens
DM4]
gi|254267667|emb|CAX23513.1| Transcriptional regulator, AraC family [Methylobacterium extorquens
DM4]
Length=340
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/256 (32%), Positives = 115/256 (45%), Gaps = 23/256 (8%)
Query 12 DTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLL-GRTPSDD-- 68
DT+++ G + + L+ W+ V+ +RR +VC+GAFL +AGLL GR +
Sbjct 92 DTLLVAGAPRIHELDLQADLLAWLGQVAKHSRRYGSVCSGAFLLGQAGLLNGRRATTHWA 151
Query 69 -ALGLCRTFRPRISGRSGRCRPDLHAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDCPDG 127
A L + + C D + A GV G G
Sbjct 152 VADALAARYPEALIEPDAICLFDGKLRTAAGVTAGLDLALALVEEDLG------------ 199
Query 128 CPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHR-------GRAGGAHRIGELAQ 180
+AR V+A G + +R+ P G + H IG LA+
Sbjct 200 AEIARQVAAQLVMFFKRGGGQMQFSRRGLSAPVGRSALQEVQRWVAAHPADNHSIGRLAE 259
Query 181 RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAIAARCGFGTAETMR 240
RA MSPRHF R+F E G P YVE +R EA RR LE + +A CGF ++T+R
Sbjct 260 RAGMSPRHFARLFRIETGLTPAAYVENVRIEAVRRLLERDDVALKQVAGACGFRDSDTLR 319
Query 241 RSFIRRVGISPDQYRK 256
R+F+RRVG +P +YR+
Sbjct 320 RAFVRRVGTTPAEYRR 335
>gi|111017320|ref|YP_700292.1| AraC family transcriptional regulator [Rhodococcus jostii RHA1]
gi|110816850|gb|ABG92134.1| transcriptional regulator, AraC family protein [Rhodococcus jostii
RHA1]
Length=319
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/271 (34%), Positives = 121/271 (45%), Gaps = 48/271 (17%)
Query 11 VDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLL----GRTPS 66
+ T ++ GG + P L ++G A R+ ++CTGAF+ A AGLL T
Sbjct 69 LSTALVMGGDLFPSTPVSPELAGAATTLAGNADRMASICTGAFILAAAGLLDGRRATTHW 128
Query 67 DDALGLCRTFRPRISGRSGRCRPDLHAQFAE------------GVDRG--WSHRRHRPRA 112
A L R + PRI+ PD A F E GVD + R H
Sbjct 129 QHADTLARGY-PRIT-----VEPD--AIFVEDGTIFSSAGVTAGVDLALAFVERDH---- 176
Query 113 GTGRRRPRHRDCPDGCPLARP-----VSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRG 167
GT R + L RP S R P G + DP G
Sbjct 177 GTELARAVAQSLV--VFLQRPGGQSQFSPSLRGPRPRTGQLREVVDAVAADPTGD----- 229
Query 168 RAGGAHRIGELAQRAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTVVAI 227
H I LA RA +SPRH TR+F DE+G P +YVE IR + A+ L+ H TV +
Sbjct 230 -----HSITRLAARANVSPRHLTRLFQDELGTTPAKYVELIRFDTAKAMLDAGH-TVTST 283
Query 228 AARCGFGTAETMRRSFIRRVGISPDQYRKAF 258
A GFG+ ET+RRSFI+ +G+SP YR+ F
Sbjct 284 AQHSGFGSPETLRRSFIQHLGVSPRAYRQQF 314
>gi|312197659|ref|YP_004017720.1| AraC family transcriptional regulator [Frankia sp. EuI1c]
gi|311228995|gb|ADP81850.1| transcriptional regulator, AraC family [Frankia sp. EuI1c]
Length=338
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/274 (34%), Positives = 121/274 (45%), Gaps = 51/274 (18%)
Query 11 VDTVILPGGAGVDAARSEPALIDWVKAVSGTARRVVTVCTGAFLAAEAGLLGRTPSDDAL 70
+D +++ GG+G A ++ L+ WV+ ++ ARRV +VCTGAFL AEAGLL +
Sbjct 90 LDLLLVSGGSGGRAPGAD--LVAWVRKLAPRARRVASVCTGAFLLAEAGLLAGRAATTHW 147
Query 71 GLCRTFRPRISGRSGRCRPDL------HAQFAEGVDRGWSHRRHRPRAGTGRRRPRHRDC 124
C F R RPD + + GV G GR
Sbjct 148 AHCAEFARRFP--EVELRPDALFVRDGNVLTSGGVTAGVDLTLALVAEDLGRE------- 198
Query 125 PDGCPLARPVSAPTRWADPVRGSGVDATRQTDLDPPGAGGHRGRAGGAHRIGELAQ---- 180
+A V+ R VD R P G G GR+ A G LA+
Sbjct 199 -----VALTVA---------RHLLVDLRRPGGQAPFGTGPAPGRSQPATHAGPLAELRQW 244
Query 181 ----------------RAAMSPRHFTRVFSDEVGEAPGRYVERIRTEAARRQLEETHDTV 224
R ++S R TR F E G PGRYV+ R AA R LEET D V
Sbjct 245 IDEHPVADLSVAALAKRVSLSERQLTRAFQAEAGVPPGRYVDEARLRAACRLLEETSDGV 304
Query 225 VAIAARCGFGTAETMRRSFIRRVGISPDQYRKAF 258
++A R G+G+AE MRR+F R VGI P +YR+ F
Sbjct 305 ESVARRSGYGSAEAMRRAFARSVGIPPSEYRRRF 338
Lambda K H
0.323 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 382276364284
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40