BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1944c
Length=196
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609081|ref|NP_216460.1| hypothetical protein Rv1944c [Mycob... 398 2e-109
gi|340626954|ref|YP_004745406.1| hypothetical protein MCAN_19611... 395 1e-108
gi|121637849|ref|YP_978072.1| hypothetical protein BCG_1983c [My... 395 2e-108
gi|289447560|ref|ZP_06437304.1| conserved hypothetical protein [... 394 3e-108
gi|167970541|ref|ZP_02552818.1| hypothetical protein MtubH3_2190... 328 2e-88
gi|294996863|ref|ZP_06802554.1| hypothetical protein Mtub2_20753... 168 4e-40
gi|328882686|emb|CCA55925.1| hypothetical protein SVEN_2639 [Str... 63.2 2e-08
gi|294629548|ref|ZP_06708108.1| SEC-C domain-containing protein ... 60.8 1e-07
gi|302551686|ref|ZP_07304028.1| conserved hypothetical protein [... 58.2 7e-07
gi|21221305|ref|NP_627084.1| hypothetical protein SCO2855 [Strep... 57.8 9e-07
gi|289771405|ref|ZP_06530783.1| conserved hypothetical protein [... 57.4 1e-06
gi|344999905|ref|YP_004802759.1| SEC-C motif domain-containing p... 55.5 4e-06
gi|290960101|ref|YP_003491283.1| hypothetical protein SCAB_57151... 55.5 4e-06
gi|254389836|ref|ZP_05005060.1| conserved hypothetical protein [... 54.7 6e-06
gi|29831747|ref|NP_826381.1| hypothetical protein SAV_5204 [Stre... 54.7 8e-06
gi|239988001|ref|ZP_04708665.1| hypothetical protein SrosN1_1189... 54.3 8e-06
gi|291444982|ref|ZP_06584372.1| conserved hypothetical protein [... 54.3 9e-06
gi|297199954|ref|ZP_06917351.1| conserved hypothetical protein [... 53.1 2e-05
gi|291453881|ref|ZP_06593271.1| conserved hypothetical protein [... 52.4 4e-05
gi|320010615|gb|ADW05465.1| hypothetical protein Sfla_4053 [Stre... 52.0 5e-05
gi|297194181|ref|ZP_06911579.1| conserved hypothetical protein [... 52.0 5e-05
gi|297561634|ref|YP_003680608.1| SEC-C motif domain-containing p... 51.6 6e-05
gi|329937992|ref|ZP_08287474.1| hypothetical protein SGM_2966 [S... 51.6 6e-05
gi|318057145|ref|ZP_07975868.1| hypothetical protein SSA3_04355 ... 49.3 3e-04
gi|302521592|ref|ZP_07273934.1| conserved hypothetical protein [... 49.3 3e-04
gi|333024767|ref|ZP_08452831.1| hypothetical protein STTU_2271 [... 48.5 5e-04
gi|302560467|ref|ZP_07312809.1| SEC-C domain-containing protein ... 46.6 0.002
gi|332702748|ref|ZP_08422836.1| Protein translocase subunit secA... 46.6 0.002
gi|345038776|gb|EGW43161.1| translocase subunit secA [Bilophila ... 45.1 0.005
gi|317487372|ref|ZP_07946162.1| preprotein translocase [Bilophil... 45.1 0.005
gi|182438473|ref|YP_001826192.1| hypothetical protein SGR_4680 [... 44.3 0.009
gi|89895085|ref|YP_518572.1| hypothetical protein DSY2339 [Desul... 44.3 0.010
gi|345361123|gb|EGW93284.1| SEC-C motif family protein [Escheric... 44.3 0.010
gi|326779119|ref|ZP_08238384.1| SEC-C motif domain protein [Stre... 44.3 0.010
gi|161485608|ref|YP_387578.2| preprotein translocase subunit Sec... 43.9 0.011
gi|290961946|ref|YP_003493128.1| hypothetical protein SCAB_76191... 43.9 0.012
gi|239908281|ref|YP_002955022.1| hypothetical protein DMR_36450 ... 42.7 0.025
gi|114567166|ref|YP_754320.1| hypothetical protein Swol_1651 [Sy... 42.7 0.025
gi|289446169|ref|ZP_06435913.1| conserved hypothetical protein [... 42.7 0.026
gi|254480701|ref|ZP_05093948.1| SEC-C motif domain protein [mari... 42.7 0.026
gi|257792097|ref|YP_003182703.1| methionine aminopeptidase, type... 42.7 0.028
gi|340625636|ref|YP_004744088.1| hypothetical protein MCAN_06151... 42.7 0.031
gi|289744327|ref|ZP_06503705.1| conserved hypothetical protein [... 42.7 0.031
gi|148821815|ref|YP_001286569.1| hypothetical protein TBFG_10624... 42.7 0.031
gi|15607753|ref|NP_215127.1| hypothetical protein Rv0613c [Mycob... 42.7 0.031
gi|325831651|ref|ZP_08164868.1| methionine aminopeptidase, type ... 42.4 0.033
gi|21674062|ref|NP_662127.1| preprotein translocase subunit SecA... 42.4 0.033
gi|219669498|ref|YP_002459933.1| methionine aminopeptidase, type... 42.4 0.036
gi|338999764|ref|ZP_08638401.1| hypothetical protein GME_16957 [... 42.4 0.038
gi|339444461|ref|YP_004710465.1| methionine aminopeptidase [Egge... 42.4 0.039
>gi|15609081|ref|NP_216460.1| hypothetical protein Rv1944c [Mycobacterium tuberculosis H37Rv]
gi|15841415|ref|NP_336452.1| hypothetical protein MT1994 [Mycobacterium tuberculosis CDC1551]
gi|31793136|ref|NP_855629.1| hypothetical protein Mb1979c [Mycobacterium bovis AF2122/97]
37 more sequence titles
Length=196
Score = 398 bits (1023), Expect = 2e-109, Method: Compositional matrix adjust.
Identities = 196/196 (100%), Positives = 196/196 (100%), Gaps = 0/196 (0%)
Query 1 MISDTEDFAHGDKAAPPRLRASYAACGGDAAGCWTMSDNGASRVPPVDETPAAESAEPIT 60
MISDTEDFAHGDKAAPPRLRASYAACGGDAAGCWTMSDNGASRVPPVDETPAAESAEPIT
Sbjct 1 MISDTEDFAHGDKAAPPRLRASYAACGGDAAGCWTMSDNGASRVPPVDETPAAESAEPIT 60
Query 61 AVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPVAHPLYCRRMQQKLVEFAEAGFPGLA 120
AVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPVAHPLYCRRMQQKLVEFAEAGFPGLA
Sbjct 61 AVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPVAHPLYCRRMQQKLVEFAEAGFPGLA 120
Query 121 VAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKY 180
VAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKY
Sbjct 121 VAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKY 180
Query 181 KKCCAAASFIDTEPAP 196
KKCCAAASFIDTEPAP
Sbjct 181 KKCCAAASFIDTEPAP 196
>gi|340626954|ref|YP_004745406.1| hypothetical protein MCAN_19611 [Mycobacterium canettii CIPT
140010059]
gi|340005144|emb|CCC44293.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=196
Score = 395 bits (1016), Expect = 1e-108, Method: Compositional matrix adjust.
Identities = 194/196 (99%), Positives = 195/196 (99%), Gaps = 0/196 (0%)
Query 1 MISDTEDFAHGDKAAPPRLRASYAACGGDAAGCWTMSDNGASRVPPVDETPAAESAEPIT 60
MISDTEDFAHGDKAAPPRLRASYAACGGDA GCWTMSDNGASRVPPVDETPAAESAEPIT
Sbjct 1 MISDTEDFAHGDKAAPPRLRASYAACGGDATGCWTMSDNGASRVPPVDETPAAESAEPIT 60
Query 61 AVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPVAHPLYCRRMQQKLVEFAEAGFPGLA 120
AVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPVAHPLYCRRMQQKLVEFAEAGFPGLA
Sbjct 61 AVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPVAHPLYCRRMQQKLVEFAEAGFPGLA 120
Query 121 VAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKY 180
VAA+RVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKY
Sbjct 121 VAAMRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKY 180
Query 181 KKCCAAASFIDTEPAP 196
KKCCAAASFIDTEPAP
Sbjct 181 KKCCAAASFIDTEPAP 196
>gi|121637849|ref|YP_978072.1| hypothetical protein BCG_1983c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224990333|ref|YP_002645020.1| hypothetical protein JTY_1967 [Mycobacterium bovis BCG str. Tokyo
172]
gi|289574627|ref|ZP_06454854.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
6 more sequence titles
Length=196
Score = 395 bits (1014), Expect = 2e-108, Method: Compositional matrix adjust.
Identities = 194/196 (99%), Positives = 195/196 (99%), Gaps = 0/196 (0%)
Query 1 MISDTEDFAHGDKAAPPRLRASYAACGGDAAGCWTMSDNGASRVPPVDETPAAESAEPIT 60
MIS+ EDFAHGDKAAPPRLRASYAACGGDAAGCWTMSDNGASRVPPVDETPAAESAEPIT
Sbjct 1 MISEAEDFAHGDKAAPPRLRASYAACGGDAAGCWTMSDNGASRVPPVDETPAAESAEPIT 60
Query 61 AVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPVAHPLYCRRMQQKLVEFAEAGFPGLA 120
AVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPVAHPLYCRRMQQKLVEFAEAGFPGLA
Sbjct 61 AVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPVAHPLYCRRMQQKLVEFAEAGFPGLA 120
Query 121 VAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKY 180
VAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKY
Sbjct 121 VAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKY 180
Query 181 KKCCAAASFIDTEPAP 196
KKCCAAASFIDTEPAP
Sbjct 181 KKCCAAASFIDTEPAP 196
>gi|289447560|ref|ZP_06437304.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289420518|gb|EFD17719.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=196
Score = 394 bits (1013), Expect = 3e-108, Method: Compositional matrix adjust.
Identities = 195/196 (99%), Positives = 195/196 (99%), Gaps = 0/196 (0%)
Query 1 MISDTEDFAHGDKAAPPRLRASYAACGGDAAGCWTMSDNGASRVPPVDETPAAESAEPIT 60
MISDTEDFAHGDKAAPPRLRASYAACGGDAAGCWTMSDNGASRVPPVDETPAAESAEPIT
Sbjct 1 MISDTEDFAHGDKAAPPRLRASYAACGGDAAGCWTMSDNGASRVPPVDETPAAESAEPIT 60
Query 61 AVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPVAHPLYCRRMQQKLVEFAEAGFPGLA 120
AVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPVAHPL CRRMQQKLVEFAEAGFPGLA
Sbjct 61 AVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPVAHPLDCRRMQQKLVEFAEAGFPGLA 120
Query 121 VAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKY 180
VAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKY
Sbjct 121 VAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKY 180
Query 181 KKCCAAASFIDTEPAP 196
KKCCAAASFIDTEPAP
Sbjct 181 KKCCAAASFIDTEPAP 196
>gi|167970541|ref|ZP_02552818.1| hypothetical protein MtubH3_21908 [Mycobacterium tuberculosis
H37Ra]
gi|254550961|ref|ZP_05141408.1| hypothetical protein Mtube_10951 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|308231988|ref|ZP_07414508.2| hypothetical protein TMAG_02125 [Mycobacterium tuberculosis SUMu001]
26 more sequence titles
Length=161
Score = 328 bits (841), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 161/161 (100%), Positives = 161/161 (100%), Gaps = 0/161 (0%)
Query 36 MSDNGASRVPPVDETPAAESAEPITAVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPV 95
MSDNGASRVPPVDETPAAESAEPITAVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPV
Sbjct 1 MSDNGASRVPPVDETPAAESAEPITAVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPV 60
Query 96 AHPLYCRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTA 155
AHPLYCRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTA
Sbjct 61 AHPLYCRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTA 120
Query 156 HGDHDVMAWPPGRNQQCWCGSGHKYKKCCAAASFIDTEPAP 196
HGDHDVMAWPPGRNQQCWCGSGHKYKKCCAAASFIDTEPAP
Sbjct 121 HGDHDVMAWPPGRNQQCWCGSGHKYKKCCAAASFIDTEPAP 161
>gi|294996863|ref|ZP_06802554.1| hypothetical protein Mtub2_20753 [Mycobacterium tuberculosis
210]
Length=117
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)
Query 36 MSDNGASRVPPVDETPAAESAEPITAVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPV 95
MSDNGASRVPPVDETPAAESAEPITAVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPV
Sbjct 1 MSDNGASRVPPVDETPAAESAEPITAVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPV 60
Query 96 AHPLYCRRMQQKLVEFAEAGFP 117
AHPLYCRRMQQKLVEFAEAGFP
Sbjct 61 AHPLYCRRMQQKLVEFAEAGFP 82
>gi|328882686|emb|CCA55925.1| hypothetical protein SVEN_2639 [Streptomyces venezuelae ATCC
10712]
Length=334
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/109 (33%), Positives = 53/109 (49%), Gaps = 6/109 (5%)
Query 79 WPDFAGSDLVTG-PDGPVAHPLY---CRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCA 134
WP+ +L+T P+ +P Y ++ L E ++AG P L + V + A+ A
Sbjct 221 WPERELDELLTAYPELEAEYPTYRAHLTDIEASLRELSQAGTPNLGIVRATVPSYEAFAA 280
Query 135 EQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKYKKC 183
+ +P + + +YA L A G AWPP R CWCGSG Y +C
Sbjct 281 SESTKPSNADLLPQYATTLAARGR--ATAWPPARGADCWCGSGRTYGEC 327
>gi|294629548|ref|ZP_06708108.1| SEC-C domain-containing protein [Streptomyces sp. e14]
gi|292832881|gb|EFF91230.1| SEC-C domain-containing protein [Streptomyces sp. e14]
Length=348
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/92 (33%), Positives = 45/92 (49%), Gaps = 2/92 (2%)
Query 97 HPLYCRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAH 156
H + ++ L E + +G P L + V + A+ A + P P +YA L A
Sbjct 254 HETHLATIEASLRELSASGTPNLGIVTGTVPSYEAFAASEATSPSDPTLLPQYATTLAAR 313
Query 157 GDHDVMAWPPGRNQQCWCGSGHKYKKCCAAAS 188
G +AWPP R ++CWCGSG Y +C A+
Sbjct 314 GR--AVAWPPQRAEECWCGSGTAYGECHGTAT 343
>gi|302551686|ref|ZP_07304028.1| conserved hypothetical protein [Streptomyces viridochromogenes
DSM 40736]
gi|302469304|gb|EFL32397.1| conserved hypothetical protein [Streptomyces viridochromogenes
DSM 40736]
Length=339
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/133 (30%), Positives = 58/133 (44%), Gaps = 11/133 (8%)
Query 56 AEPITAVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPVAHPLYCRRMQQKLVEFAEAG 115
+ P L W PA + L+ +P A + P +H + ++ L E A +G
Sbjct 217 SRPFPVAILHW-PATELTELLEAYPALAS-------EYP-SHETHLATIEAALRELASSG 267
Query 116 FPGLAVAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCG 175
P L + V + A+ A + P P +YA L A G +AWPP + CWCG
Sbjct 268 TPNLGIVTGTVPSYEAFAASELSSPSDPTLLPQYATTLAARGR--AVAWPPQQGSACWCG 325
Query 176 SGHKYKKCCAAAS 188
SG Y +C A +
Sbjct 326 SGRPYGQCHGAVA 338
>gi|21221305|ref|NP_627084.1| hypothetical protein SCO2855 [Streptomyces coelicolor A3(2)]
gi|6689188|emb|CAB65585.1| hypothetical protein SCE20.29 [Streptomyces coelicolor A3(2)]
Length=338
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/80 (39%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query 104 MQQKLVEFAEAGFPGLAVAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMA 163
++ L E A +G P L V V + A+ A +G P P +YA L A G +A
Sbjct 258 IEAALRELASSGTPNLGVVPGTVPSYEAFAASEGASPADPVLLPQYATTLAARGL--AVA 315
Query 164 WPPGRNQQCWCGSGHKYKKC 183
WPP R CWCGSG Y +C
Sbjct 316 WPPQRGADCWCGSGRAYGEC 335
>gi|289771405|ref|ZP_06530783.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|289701604|gb|EFD69033.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length=243
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (39%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query 104 MQQKLVEFAEAGFPGLAVAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMA 163
++ L E A +G P L V V + A+ A +G P P +YA L A G +A
Sbjct 163 IEAALRELASSGTPNLGVVPGTVPSYEAFAASEGASPADPVLLPQYATTLAARGL--AVA 220
Query 164 WPPGRNQQCWCGSGHKYKKC 183
WPP R CWCGSG Y +C
Sbjct 221 WPPQRGADCWCGSGRAYGEC 240
>gi|344999905|ref|YP_004802759.1| SEC-C motif domain-containing protein [Streptomyces sp. SirexAA-E]
gi|344315531|gb|AEN10219.1| SEC-C motif domain protein [Streptomyces sp. SirexAA-E]
Length=337
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/128 (29%), Positives = 55/128 (43%), Gaps = 11/128 (8%)
Query 56 AEPITAVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPVAHPLYCRRMQQKLVEFAEAG 115
+ P L W P + LD++P+ + V H + R++ L + AG
Sbjct 215 SRPFPVAVLHW-PEKELAELLDVYPELR--------EEYVDHATHLSRLENSLRDLHAAG 265
Query 116 FPGLAVAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCG 175
P L + V + A+ A + P P +YA L A G + WPP R+ CWCG
Sbjct 266 TPNLGIVTGTVPSYEAFAASEAASPSDPGLLPQYATTLAARGR--AVPWPPARSAACWCG 323
Query 176 SGHKYKKC 183
+G Y+ C
Sbjct 324 TGRPYRDC 331
>gi|290960101|ref|YP_003491283.1| hypothetical protein SCAB_57151 [Streptomyces scabiei 87.22]
gi|260649627|emb|CBG72742.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length=336
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/131 (29%), Positives = 56/131 (43%), Gaps = 11/131 (8%)
Query 56 AEPITAVSLAWLPAGDYERALDLWPDFAGSDLVTGPDGPVAHPLYCRRMQQKLVEFAEAG 115
+ P L W PAG+ + +P A + P +H + ++ L E + +G
Sbjct 217 SRPFPVAVLHW-PAGELAELIAAYPGLAA-------EYP-SHEEHLATIEASLRELSSSG 267
Query 116 FPGLAVAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCG 175
P L + V + A+ A + P +YA L A G ++WPP R CWCG
Sbjct 268 TPNLGIVTGTVPSYEAFAASESSSPSDATLLPQYATTLAARGL--AVSWPPQRGAACWCG 325
Query 176 SGHKYKKCCAA 186
SG Y+ C A
Sbjct 326 SGETYETCHGA 336
>gi|254389836|ref|ZP_05005060.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294812828|ref|ZP_06771471.1| Hypothetical protein SCLAV_1997 [Streptomyces clavuligerus ATCC
27064]
gi|326441221|ref|ZP_08215955.1| hypothetical protein SclaA2_09146 [Streptomyces clavuligerus
ATCC 27064]
gi|197703547|gb|EDY49359.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294325427|gb|EFG07070.1| Hypothetical protein SCLAV_1997 [Streptomyces clavuligerus ATCC
27064]
Length=337
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/93 (31%), Positives = 42/93 (46%), Gaps = 2/93 (2%)
Query 97 HPLYCRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAH 156
H + ++ L + A G L + V + A+ A +G P + ++ L A
Sbjct 247 HAAHLTDIEASLRDLASTGTANLGIVTAAVPSYEAFAASEGSSPADADLLPQFTTTLAAR 306
Query 157 GDHDVMAWPPGRNQQCWCGSGHKYKKCCAAASF 189
G +AWPP R CWCGSG Y++C A F
Sbjct 307 GH--AVAWPPHRTAPCWCGSGTGYRECHGGADF 337
>gi|29831747|ref|NP_826381.1| hypothetical protein SAV_5204 [Streptomyces avermitilis MA-4680]
gi|29608864|dbj|BAC72916.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length=337
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/91 (32%), Positives = 43/91 (48%), Gaps = 2/91 (2%)
Query 96 AHPLYCRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTA 155
+H + ++ L E + +G P L + V + A+ A + P +YA L A
Sbjct 248 SHEQHLATIEASLRELSASGTPNLGIVTGTVPSYEAFAASEASSPADGSLLPQYATTLAA 307
Query 156 HGDHDVMAWPPGRNQQCWCGSGHKYKKCCAA 186
G +AWPP R +CWCGSG Y +C A
Sbjct 308 RGL--AVAWPPQRTGECWCGSGRVYGECHGA 336
>gi|239988001|ref|ZP_04708665.1| hypothetical protein SrosN1_11893 [Streptomyces roseosporus NRRL
11379]
Length=334
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/109 (30%), Positives = 46/109 (43%), Gaps = 6/109 (5%)
Query 79 WPDFAGSDLVTG----PDGPVAHPLYCRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCA 134
WP+ +L+T + V + R++ L + G P L + V + A+ A
Sbjct 225 WPEQELRELLTTYPELTEEYVDRTTHLARLEASLRDLHATGTPNLGIVTGTVPSYEAFAA 284
Query 135 EQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKYKKC 183
+ P P +YA L A G + WPP R CWCGSG Y C
Sbjct 285 SESASPSDPGLLPQYATTLAARGR--AIPWPPSRTAACWCGSGEAYGGC 331
>gi|291444982|ref|ZP_06584372.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291347929|gb|EFE74833.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length=337
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/109 (30%), Positives = 46/109 (43%), Gaps = 6/109 (5%)
Query 79 WPDFAGSDLVTG----PDGPVAHPLYCRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCA 134
WP+ +L+T + V + R++ L + G P L + V + A+ A
Sbjct 228 WPEQELRELLTTYPELTEEYVDRTTHLARLEASLRDLHATGTPNLGIVTGTVPSYEAFAA 287
Query 135 EQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKYKKC 183
+ P P +YA L A G + WPP R CWCGSG Y C
Sbjct 288 SESASPSDPGLLPQYATTLAARGR--AIPWPPSRTAACWCGSGEAYGGC 334
>gi|297199954|ref|ZP_06917351.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197710424|gb|EDY54458.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length=336
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/88 (32%), Positives = 41/88 (47%), Gaps = 2/88 (2%)
Query 96 AHPLYCRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTA 155
+H + ++ L E A +G L + + V + A+ A +G P +YA L A
Sbjct 248 SHEEHLATIEASLRELAASGTANLGIVSGTVPSYEAFAASEGMSPAETSLLPQYATTLAA 307
Query 156 HGDHDVMAWPPGRNQQCWCGSGHKYKKC 183
G + WPP R CWCGSG Y +C
Sbjct 308 RGR--AVEWPPQRGTACWCGSGRGYGEC 333
>gi|291453881|ref|ZP_06593271.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291356830|gb|EFE83732.1| conserved hypothetical protein [Streptomyces albus J1074]
Length=337
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/91 (31%), Positives = 41/91 (46%), Gaps = 2/91 (2%)
Query 96 AHPLYCRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTA 155
+H + ++ L E A +G P L + + + A+ A + P P YA L A
Sbjct 249 SHEAHLAAVESSLRELATSGTPHLGTVSATLPSYEAFAASESTTPTDPSLLPLYATTLAA 308
Query 156 HGDHDVMAWPPGRNQQCWCGSGHKYKKCCAA 186
G AWPP + CWCGS +Y +C A
Sbjct 309 RGR--AKAWPPAKEGACWCGSDRRYGECHGA 337
>gi|320010615|gb|ADW05465.1| hypothetical protein Sfla_4053 [Streptomyces flavogriseus ATCC
33331]
Length=335
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/112 (31%), Positives = 50/112 (45%), Gaps = 6/112 (5%)
Query 79 WPDFAGSDLVTG----PDGPVAHPLYCRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCA 134
WP +L+T V+H + R++ L + AG P L + V + A+ A
Sbjct 225 WPQDELRELLTAYPELSQEYVSHEDHLARLEAALRDLHAAGTPNLGIVTGTVPSYEAFAA 284
Query 135 EQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKYKKCCAA 186
+ P P+ +YA L A G + WPP R+ CWCGS Y+ C A
Sbjct 285 SEAASPSDPDLLPQYATTLAARGR--AVPWPPARSAACWCGSERPYRSCHGA 334
>gi|297194181|ref|ZP_06911579.1| conserved hypothetical protein [Streptomyces pristinaespiralis
ATCC 25486]
gi|297152152|gb|EFH31557.1| conserved hypothetical protein [Streptomyces pristinaespiralis
ATCC 25486]
Length=346
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/98 (28%), Positives = 43/98 (44%), Gaps = 2/98 (2%)
Query 97 HPLYCRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAH 156
H + ++ L + + G L + V + A+ A + P + + +YA L A
Sbjct 249 HRAHLTDIEASLRDLSATGTENLGIVTATVPSYEAFAASEQSSPANADLLPQYATTLAAR 308
Query 157 GDHDVMAWPPGRNQQCWCGSGHKYKKCCAAASFIDTEP 194
G +AWPP ++ CWCGSG Y +C A P
Sbjct 309 GR--AVAWPPSKSAACWCGSGRTYGECHGVAELSRASP 344
>gi|297561634|ref|YP_003680608.1| SEC-C motif domain-containing protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296846082|gb|ADH68102.1| SEC-C motif domain protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length=337
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/28 (65%), Positives = 22/28 (79%), Gaps = 0/28 (0%)
Query 161 VMAWPPGRNQQCWCGSGHKYKKCCAAAS 188
+ +WPPGRN+ CWC SG KYKKCC + S
Sbjct 308 LRSWPPGRNEPCWCASGRKYKKCCGSPS 335
>gi|329937992|ref|ZP_08287474.1| hypothetical protein SGM_2966 [Streptomyces griseoaurantiacus
M045]
gi|329302949|gb|EGG46838.1| hypothetical protein SGM_2966 [Streptomyces griseoaurantiacus
M045]
Length=348
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/88 (32%), Positives = 39/88 (45%), Gaps = 2/88 (2%)
Query 96 AHPLYCRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTA 155
+H + ++ L E A +G P L + A V + A+ A + P P +YA L A
Sbjct 258 SHEEHLATTERSLRELAASGTPNLGIVAGTVPSYEAFAASEASSPSDPALLPQYATTLAA 317
Query 156 HGDHDVMAWPPGRNQQCWCGSGHKYKKC 183
G WPP CWCGS Y+ C
Sbjct 318 RG--RARQWPPQHGTACWCGSDAPYETC 343
>gi|318057145|ref|ZP_07975868.1| hypothetical protein SSA3_04355 [Streptomyces sp. SA3_actG]
gi|318080023|ref|ZP_07987355.1| hypothetical protein SSA3_25893 [Streptomyces sp. SA3_actF]
Length=356
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/112 (29%), Positives = 48/112 (43%), Gaps = 6/112 (5%)
Query 79 WPDFAGSDLVTG-PDGPVAHPLY---CRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCA 134
WP+ ++L+T P +P Y R ++ L + A +G P L + V + A+ A
Sbjct 246 WPEPELTELLTSYPALATEYPSYEAHTRSIESALRDLAASGIPNLGIVRATVPSYEAFAA 305
Query 135 EQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKYKKCCAA 186
+ P +P Y L WPP +CWCGSG Y+ C A
Sbjct 306 AESTAPTTPALLPLYTTTLATRAL--ATPWPPHPGAECWCGSGAGYEGCHGA 355
>gi|302521592|ref|ZP_07273934.1| conserved hypothetical protein [Streptomyces sp. SPB78]
gi|302430487|gb|EFL02303.1| conserved hypothetical protein [Streptomyces sp. SPB78]
Length=354
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/112 (29%), Positives = 48/112 (43%), Gaps = 6/112 (5%)
Query 79 WPDFAGSDLVTG-PDGPVAHPLY---CRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCA 134
WP+ ++L+T P +P Y R ++ L + A +G P L + V + A+ A
Sbjct 244 WPEPELTELLTSYPALATEYPSYEAHTRSIESALRDLAASGIPNLGIVRATVPSYEAFAA 303
Query 135 EQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKYKKCCAA 186
+ P +P Y L WPP +CWCGSG Y+ C A
Sbjct 304 AESTAPTTPALLPLYTTTLATRAL--ATPWPPHPGAECWCGSGAGYEGCHGA 353
>gi|333024767|ref|ZP_08452831.1| hypothetical protein STTU_2271 [Streptomyces sp. Tu6071]
gi|332744619|gb|EGJ75060.1| hypothetical protein STTU_2271 [Streptomyces sp. Tu6071]
Length=522
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/112 (29%), Positives = 48/112 (43%), Gaps = 6/112 (5%)
Query 79 WPDFAGSDLVTG-PDGPVAHPLY---CRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCA 134
WP+ ++L+T P +P Y R ++ L + A +G P L + V + A+ A
Sbjct 412 WPEPELTELLTSYPALATEYPSYEAHTRSIESALRDLAASGIPNLGIVRATVPSYEAFAA 471
Query 135 EQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKYKKCCAA 186
+ P +P Y L WPP +CWCGSG Y+ C A
Sbjct 472 AESTAPTTPALLPLYTTTLATRAL--ATPWPPHPGAECWCGSGTGYEGCHGA 521
>gi|302560467|ref|ZP_07312809.1| SEC-C domain-containing protein [Streptomyces griseoflavus Tu4000]
gi|302478085|gb|EFL41178.1| SEC-C domain-containing protein [Streptomyces griseoflavus Tu4000]
Length=337
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (31%), Positives = 47/112 (42%), Gaps = 6/112 (5%)
Query 79 WPDFAGSDLVTG-PDGPVAHPLY---CRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCA 134
WP ++L PD +P Y ++ L E A +G L + V + A+ A
Sbjct 227 WPADELAELTEAYPDLTREYPSYDAHLATIEAALRELASSGTANLGIVTGTVPSYEAFAA 286
Query 135 EQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKYKKCCAA 186
+ P +YA L A G +AWPP + CWCGSG Y C A
Sbjct 287 SELSSPADATLLPQYATTLAARGR--AVAWPPEPSAACWCGSGRTYGDCHGA 336
>gi|332702748|ref|ZP_08422836.1| Protein translocase subunit secA [Desulfovibrio africanus str.
Walvis Bay]
gi|332552897|gb|EGJ49941.1| Protein translocase subunit secA [Desulfovibrio africanus str.
Walvis Bay]
Length=838
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/55 (46%), Positives = 28/55 (51%), Gaps = 2/55 (3%)
Query 135 EQGQEPDSPEARAEYAAYLTAHGDHDVMAWPP--GRNQQCWCGSGHKYKKCCAAA 187
E+ Q + P+ A TA G V P GRN C CGSG KYKKCC AA
Sbjct 783 EEFQHKEEPKNVQYSGAEKTAAGKQPVKREAPKVGRNDPCPCGSGKKYKKCCGAA 837
>gi|345038776|gb|EGW43161.1| translocase subunit secA [Bilophila sp. 4_1_30]
Length=852
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 32/94 (35%), Positives = 41/94 (44%), Gaps = 14/94 (14%)
Query 105 QQKLVEFAEAGFPGLAVAAIRVAPFAAWCAEQ---GQEPDSPEARAEYAAYLTAHGD-HD 160
Q+ LV E F A+ +RV AE+ EP+ E L+ + D
Sbjct 758 QELLVHIREGAFR--ALTRVRVEQRPTEVAEEVVAAPEPEPMFQHKEQPQQLSYSNEPED 815
Query 161 VMAWP--------PGRNQQCWCGSGHKYKKCCAA 186
++ P PGRN C CGSG KYKKCC A
Sbjct 816 LLGAPAQAKAENKPGRNDPCPCGSGKKYKKCCGA 849
>gi|317487372|ref|ZP_07946162.1| preprotein translocase [Bilophila wadsworthia 3_1_6]
gi|316921368|gb|EFV42664.1| preprotein translocase [Bilophila wadsworthia 3_1_6]
Length=852
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 32/94 (35%), Positives = 41/94 (44%), Gaps = 14/94 (14%)
Query 105 QQKLVEFAEAGFPGLAVAAIRVAPFAAWCAEQ---GQEPDSPEARAEYAAYLTAHGD-HD 160
Q+ LV E F A+ +RV AE+ EP+ E L+ + D
Sbjct 758 QELLVHIREGAFR--ALTRVRVEQRPTEVAEEVVAAPEPEPMFQHKEQPQQLSYSNEPED 815
Query 161 VMAWP--------PGRNQQCWCGSGHKYKKCCAA 186
++ P PGRN C CGSG KYKKCC A
Sbjct 816 LLGAPAQAKAENKPGRNDPCPCGSGKKYKKCCGA 849
>gi|182438473|ref|YP_001826192.1| hypothetical protein SGR_4680 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178466989|dbj|BAG21509.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length=334
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/84 (34%), Positives = 40/84 (48%), Gaps = 2/84 (2%)
Query 100 YCRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDH 159
+ R++ L + AG P L + V + A+ A + P +P +YA L A G
Sbjct 250 HLDRLEAALRDLHAAGTPNLGIVTGTVPSYEAFAASEAASPAAPGLLPQYATTLAARGR- 308
Query 160 DVMAWPPGRNQQCWCGSGHKYKKC 183
+ WPP R CWCGSG Y +C
Sbjct 309 -AIPWPPSRTAACWCGSGETYGRC 331
>gi|89895085|ref|YP_518572.1| hypothetical protein DSY2339 [Desulfitobacterium hafniense Y51]
gi|89334533|dbj|BAE84128.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length=303
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/27 (63%), Positives = 21/27 (78%), Gaps = 0/27 (0%)
Query 160 DVMAWPPGRNQQCWCGSGHKYKKCCAA 186
D M+ GRN++CWCGSG KYKKC A+
Sbjct 11 DFMSDKLGRNEECWCGSGQKYKKCHAS 37
>gi|345361123|gb|EGW93284.1| SEC-C motif family protein [Escherichia coli STEC_EH250]
Length=695
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 15/19 (79%), Positives = 17/19 (90%), Gaps = 0/19 (0%)
Query 166 PGRNQQCWCGSGHKYKKCC 184
PGRN+ C+CGSG KYKKCC
Sbjct 675 PGRNEPCFCGSGKKYKKCC 693
>gi|326779119|ref|ZP_08238384.1| SEC-C motif domain protein [Streptomyces cf. griseus XylebKG-1]
gi|326659452|gb|EGE44298.1| SEC-C motif domain protein [Streptomyces griseus XylebKG-1]
Length=334
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/84 (34%), Positives = 40/84 (48%), Gaps = 2/84 (2%)
Query 100 YCRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWCAEQGQEPDSPEARAEYAAYLTAHGDH 159
+ R++ L + AG P L + V + A+ A + P +P +YA L A G
Sbjct 250 HLDRLEAALRDLHAAGTPNLGIVTGTVPSYEAFAASEAASPAAPGLLPQYATTLAARGR- 308
Query 160 DVMAWPPGRNQQCWCGSGHKYKKC 183
+ WPP R CWCGSG Y +C
Sbjct 309 -AIPWPPSRTAACWCGSGETYGRC 331
>gi|161485608|ref|YP_387578.2| preprotein translocase subunit SecA [Desulfovibrio alaskensis
G20]
gi|166918872|sp|Q313L3.2|SECA_DESDG RecName: Full=Protein translocase subunit secA
gi|342906371|gb|ABB37883.2| preprotein translocase, SecA subunit [Desulfovibrio alaskensis
G20]
Length=864
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 35/96 (37%), Positives = 42/96 (44%), Gaps = 14/96 (14%)
Query 105 QQKLVEFAEAGFPGLAVAAIRVAPFAAWCAEQGQEPDSPEARA------EYAAYLT-AHG 157
Q L E+ F L ++ AA AEQ + EA+A E A L+ + G
Sbjct 769 QNMLWSIKESVFRALTRLRLQRVEEAADPAEQPEAAGLQEAKATELRHKEQPAELSYSGG 828
Query 158 DHDVMAWPP-------GRNQQCWCGSGHKYKKCCAA 186
D D P GRN C CGSG KYKKCC A
Sbjct 829 DEDGAKTPSRRNAPKVGRNDPCPCGSGKKYKKCCGA 864
>gi|290961946|ref|YP_003493128.1| hypothetical protein SCAB_76191 [Streptomyces scabiei 87.22]
gi|260651472|emb|CBG74594.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length=314
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/84 (35%), Positives = 40/84 (48%), Gaps = 11/84 (13%)
Query 74 RALDLWPDFAGSDLVTGPDGPVAHPLYCRRMQQKLVEFAEAGFPGLAVAAIRVAPFAAWC 133
RA+ + FA D HP Y R+++ L AE G VA +AA+C
Sbjct 43 RAMRRYRSFAFDD----------HPTYLRQVEALLRTLAEQG-NHTTVALFDPEEYAAFC 91
Query 134 AEQGQEPDSPEARAEYAAYLTAHG 157
A+ G EPD+P +R + A L A G
Sbjct 92 ADTGLEPDTPSSRTRFTAELAATG 115
>gi|239908281|ref|YP_002955022.1| hypothetical protein DMR_36450 [Desulfovibrio magneticus RS-1]
gi|239798147|dbj|BAH77136.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length=703
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 14/20 (70%), Positives = 18/20 (90%), Gaps = 0/20 (0%)
Query 166 PGRNQQCWCGSGHKYKKCCA 185
PGRN++C+CGSG KYK+CC
Sbjct 89 PGRNEKCFCGSGKKYKQCCG 108
>gi|114567166|ref|YP_754320.1| hypothetical protein Swol_1651 [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114338101|gb|ABI68949.1| hypothetical protein Swol_1651 [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length=420
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/24 (71%), Positives = 17/24 (71%), Gaps = 0/24 (0%)
Query 163 AWPPGRNQQCWCGSGHKYKKCCAA 186
A PGRN C CGSG KYKKCC A
Sbjct 4 ALKPGRNDPCLCGSGKKYKKCCGA 27
>gi|289446169|ref|ZP_06435913.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289419127|gb|EFD16328.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=855
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/54 (43%), Positives = 26/54 (49%), Gaps = 7/54 (12%)
Query 130 AAWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKYKKC 183
+A G EPD P R A D+ GRN+ CWCGSG KYKKC
Sbjct 418 SALLRRAGTEPDHPLVR--LLERHRAQPRRDL-----GRNEACWCGSGRKYKKC 464
>gi|254480701|ref|ZP_05093948.1| SEC-C motif domain protein [marine gamma proteobacterium HTCC2148]
gi|214039284|gb|EEB79944.1| SEC-C motif domain protein [marine gamma proteobacterium HTCC2148]
Length=113
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/68 (40%), Positives = 32/68 (48%), Gaps = 9/68 (13%)
Query 125 RVAPFAAWCAEQ--------GQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGS 176
R A AA AE +E + E AE A L D ++ P RN+ C CGS
Sbjct 46 RKAEVAALVAEHALFADIQINEEAEEQENIAELMA-LVNRTDTVSVSKTPNRNEPCSCGS 104
Query 177 GHKYKKCC 184
G KYKKCC
Sbjct 105 GKKYKKCC 112
>gi|257792097|ref|YP_003182703.1| methionine aminopeptidase, type I [Eggerthella lenta DSM 2243]
gi|317488717|ref|ZP_07947254.1| methionine aminopeptidase [Eggerthella sp. 1_3_56FAA]
gi|257475994|gb|ACV56314.1| methionine aminopeptidase, type I [Eggerthella lenta DSM 2243]
gi|316912184|gb|EFV33756.1| methionine aminopeptidase [Eggerthella sp. 1_3_56FAA]
Length=294
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/21 (77%), Positives = 17/21 (81%), Gaps = 0/21 (0%)
Query 166 PGRNQQCWCGSGHKYKKCCAA 186
PGRN +CWCGSG KYKKC A
Sbjct 8 PGRNDECWCGSGKKYKKCHLA 28
>gi|340625636|ref|YP_004744088.1| hypothetical protein MCAN_06151 [Mycobacterium canettii CIPT
140010059]
gi|340003826|emb|CCC42955.1| hypothetical protein MCAN_06151 [Mycobacterium canettii CIPT
140010059]
Length=855
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/53 (44%), Positives = 25/53 (48%), Gaps = 7/53 (13%)
Query 131 AWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKYKKC 183
A G EPD P R A D+ GRN+ CWCGSG KYKKC
Sbjct 419 ALLRRAGTEPDHPLVR--LLERHRAQPRRDL-----GRNEACWCGSGRKYKKC 464
>gi|289744327|ref|ZP_06503705.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289756694|ref|ZP_06516072.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|294996128|ref|ZP_06801819.1| hypothetical protein Mtub2_16910 [Mycobacterium tuberculosis
210]
gi|289684855|gb|EFD52343.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289712258|gb|EFD76270.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|326905164|gb|EGE52097.1| preprotein translocase subunit SecA [Mycobacterium tuberculosis
W-148]
gi|339293652|gb|AEJ45763.1| hypothetical protein CCDC5079_0573 [Mycobacterium tuberculosis
CCDC5079]
gi|339297293|gb|AEJ49403.1| hypothetical protein CCDC5180_0566 [Mycobacterium tuberculosis
CCDC5180]
Length=855
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/53 (44%), Positives = 25/53 (48%), Gaps = 7/53 (13%)
Query 131 AWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKYKKC 183
A G EPD P R A D+ GRN+ CWCGSG KYKKC
Sbjct 419 ALLRRAGTEPDHPLVR--LLERHRAQPRRDL-----GRNEACWCGSGRKYKKC 464
>gi|148821815|ref|YP_001286569.1| hypothetical protein TBFG_10624 [Mycobacterium tuberculosis F11]
gi|253797550|ref|YP_003030551.1| hypothetical protein TBMG_00621 [Mycobacterium tuberculosis KZN
1435]
gi|254549571|ref|ZP_05140018.1| hypothetical protein Mtube_03760 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
9 more sequence titles
Length=855
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/53 (44%), Positives = 25/53 (48%), Gaps = 7/53 (13%)
Query 131 AWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKYKKC 183
A G EPD P R A D+ GRN+ CWCGSG KYKKC
Sbjct 419 ALLRRAGTEPDHPLVR--LLERHRAQPRRDL-----GRNEACWCGSGRKYKKC 464
>gi|15607753|ref|NP_215127.1| hypothetical protein Rv0613c [Mycobacterium tuberculosis H37Rv]
gi|15840015|ref|NP_335052.1| hypothetical protein MT0643 [Mycobacterium tuberculosis CDC1551]
gi|31791796|ref|NP_854289.1| hypothetical protein Mb0630c [Mycobacterium bovis AF2122/97]
37 more sequence titles
Length=855
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/53 (44%), Positives = 25/53 (48%), Gaps = 7/53 (13%)
Query 131 AWCAEQGQEPDSPEARAEYAAYLTAHGDHDVMAWPPGRNQQCWCGSGHKYKKC 183
A G EPD P R A D+ GRN+ CWCGSG KYKKC
Sbjct 419 ALLRRAGTEPDHPLVR--LLERHRAQPRRDL-----GRNEACWCGSGRKYKKC 464
>gi|325831651|ref|ZP_08164868.1| methionine aminopeptidase, type I [Eggerthella sp. HGA1]
gi|325486522|gb|EGC88971.1| methionine aminopeptidase, type I [Eggerthella sp. HGA1]
Length=294
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/21 (77%), Positives = 17/21 (81%), Gaps = 0/21 (0%)
Query 166 PGRNQQCWCGSGHKYKKCCAA 186
PGRN +CWCGSG KYKKC A
Sbjct 8 PGRNDECWCGSGKKYKKCHLA 28
>gi|21674062|ref|NP_662127.1| preprotein translocase subunit SecA [Chlorobium tepidum TLS]
gi|81860066|sp|Q8KD18.1|SECA_CHLTE RecName: Full=Protein translocase subunit secA
gi|21647214|gb|AAM72469.1| preprotein translocase SecA subunit [Chlorobium tepidum TLS]
Length=1031
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 22/42 (53%), Gaps = 6/42 (14%)
Query 151 AYLTAHGDHDVMAWP------PGRNQQCWCGSGHKYKKCCAA 186
A L GD V+ P PGRN C CGSG KYK CC A
Sbjct 988 ATLWMPGDEIVVQQPVRTEKKPGRNDDCPCGSGKKYKNCCGA 1029
>gi|219669498|ref|YP_002459933.1| methionine aminopeptidase, type I [Desulfitobacterium hafniense
DCB-2]
gi|219539758|gb|ACL21497.1| methionine aminopeptidase, type I [Desulfitobacterium hafniense
DCB-2]
Length=291
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%), Gaps = 0/25 (0%)
Query 162 MAWPPGRNQQCWCGSGHKYKKCCAA 186
M+ GRN++CWCGSG KYKKC A+
Sbjct 1 MSDKLGRNEECWCGSGQKYKKCHAS 25
>gi|338999764|ref|ZP_08638401.1| hypothetical protein GME_16957 [Halomonas sp. TD01]
gi|338763385|gb|EGP18380.1| hypothetical protein GME_16957 [Halomonas sp. TD01]
Length=606
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/24 (59%), Positives = 17/24 (71%), Gaps = 0/24 (0%)
Query 166 PGRNQQCWCGSGHKYKKCCAAASF 189
PGRN+ CWC SG K+K+CC F
Sbjct 74 PGRNEPCWCDSGRKFKQCCYRVDF 97
>gi|339444461|ref|YP_004710465.1| methionine aminopeptidase [Eggerthella sp. YY7918]
gi|338904213|dbj|BAK44064.1| methionine aminopeptidase [Eggerthella sp. YY7918]
Length=294
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/18 (84%), Positives = 16/18 (89%), Gaps = 0/18 (0%)
Query 166 PGRNQQCWCGSGHKYKKC 183
PGRN +CWCGSG KYKKC
Sbjct 8 PGRNDECWCGSGRKYKKC 25
Lambda K H
0.318 0.133 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 205411802368
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40