BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1947 Length=133 Score E Sequences producing significant alignments: (Bits) Value gi|15609084|ref|NP_216463.1| hypothetical protein Rv1947 [Mycoba... 274 2e-72 gi|119714085|ref|YP_919227.1| helicase domain-containing protein... 193 6e-48 gi|329940573|ref|ZP_08289854.1| putative DNA helicase [Streptomy... 156 1e-36 gi|317126185|ref|YP_004100297.1| helicase [Intrasporangium calvu... 154 3e-36 gi|325003372|ref|ZP_08124484.1| helicase domain protein [Pseudon... 152 1e-35 gi|269957108|ref|YP_003326897.1| helicase domain-containing prot... 145 3e-33 gi|269793674|ref|YP_003313129.1| helicase [Sanguibacter keddieii... 127 4e-28 gi|325068192|ref|ZP_08126865.1| helicase domain protein [Actinom... 120 5e-26 gi|326774110|ref|ZP_08233392.1| helicase [Actinomyces viscosus C... 118 3e-25 gi|108797791|ref|YP_637988.1| helicase-like protein [Mycobacteri... 107 5e-22 gi|328885790|emb|CCA59029.1| helicase [Streptomyces venezuelae A... 75.5 2e-12 gi|297561673|ref|YP_003680647.1| helicase [Nocardiopsis dassonvi... 68.2 4e-10 gi|269126750|ref|YP_003300120.1| helicase domain-containing prot... 64.3 6e-09 gi|258650718|ref|YP_003199874.1| helicase domain-containing prot... 55.5 2e-06 gi|111219759|ref|YP_710553.1| hypothetical protein FRAAL0262 [Fr... 49.3 2e-04 gi|254787983|ref|YP_003075412.1| helicase domain-containing prot... 48.5 3e-04 gi|309791581|ref|ZP_07686075.1| helicase-like protein [Oscilloch... 47.4 7e-04 gi|312200734|ref|YP_004020795.1| helicase domain protein [Franki... 46.6 0.001 gi|298505468|gb|ADI84191.1| conserved hypothetical protein [Geob... 44.3 0.006 gi|323495149|ref|ZP_08100234.1| hypothetical protein VIBR0546_08... 44.3 0.006 gi|196035147|ref|ZP_03102553.1| helicase domain protein [Bacillu... 43.9 0.008 gi|116751267|ref|YP_847954.1| helicase domain-containing protein... 43.1 0.013 gi|219883146|ref|YP_002478308.1| helicase domain protein [Cyanot... 42.4 0.026 gi|288919499|ref|ZP_06413830.1| helicase domain protein [Frankia... 42.0 0.030 gi|189500354|ref|YP_001959824.1| helicase domain-containing prot... 41.6 0.036 gi|344341849|ref|ZP_08772764.1| helicase domain-containing prote... 41.6 0.044 gi|75907551|ref|YP_321847.1| helicase-like protein [Anabaena var... 40.8 0.067 gi|163848463|ref|YP_001636507.1| helicase domain-containing prot... 40.4 0.087 gi|229552045|ref|ZP_04440770.1| probable DNA helicase [Lactobaci... 40.4 0.098 gi|258539459|ref|YP_003173958.1| helicase domain-containing prot... 40.4 0.099 gi|229056691|ref|ZP_04196095.1| hypothetical protein bcere0026_8... 40.4 0.10 gi|336391197|ref|ZP_08572596.1| helicase domain-containing prote... 40.0 0.11 gi|302343994|ref|YP_003808523.1| helicase domain protein [Desulf... 40.0 0.11 gi|344338976|ref|ZP_08769906.1| helicase domain-containing prote... 40.0 0.11 gi|225571374|ref|ZP_03780370.1| hypothetical protein CLOHYLEM_07... 39.3 0.17 gi|320094596|ref|ZP_08026362.1| hypothetical protein HMPREF9005_... 39.3 0.21 gi|157961101|ref|YP_001501135.1| helicase domain-containing prot... 38.9 0.23 gi|75812883|ref|YP_320500.1| helicase-like [Anabaena variabilis ... 38.9 0.27 gi|162451511|ref|YP_001613878.1| superfamily II DNA/RNA helicase... 38.5 0.32 gi|302554831|ref|ZP_07307173.1| helicase [Streptomyces viridochr... 38.5 0.34 gi|196044233|ref|ZP_03111469.1| helicase domain protein [Bacillu... 38.1 0.39 gi|27375977|ref|NP_767506.1| hypothetical protein blr0866 [Brady... 38.1 0.46 gi|221369952|ref|YP_002521048.1| DNA helicase [Rhodobacter sphae... 37.7 0.60 gi|194015384|ref|ZP_03054000.1| helicase domain protein [Bacillu... 37.4 0.71 gi|254384439|ref|ZP_04999780.1| helicase [Streptomyces sp. Mg1] ... 36.6 1.1 gi|218709636|ref|YP_002417257.1| putative helicase family protei... 36.6 1.2 gi|121608167|ref|YP_995974.1| helicase domain-containing protein... 36.6 1.3 gi|332661971|ref|YP_004451440.1| helicase domain-containing prot... 36.2 1.6 gi|345455466|gb|EEO46987.2| helicase domain-containing protein [... 35.8 2.1 gi|237724715|ref|ZP_04555196.1| helicase domain-containing prote... 35.8 2.1 >gi|15609084|ref|NP_216463.1| hypothetical protein Rv1947 [Mycobacterium tuberculosis H37Rv] gi|15841418|ref|NP_336455.1| hypothetical protein MT1998 [Mycobacterium tuberculosis CDC1551] gi|31793139|ref|NP_855632.1| hypothetical protein Mb1982 [Mycobacterium bovis AF2122/97] 80 more sequence titles Length=133 Score = 274 bits (701), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 132/133 (99%), Positives = 133/133 (100%), Gaps = 0/133 (0%) Query 1 VDRYNDQASGRALIEIRLCNERATPMPIPIGLWMFQTKLHVNAGGADVFLPVCDVLEQDL 60 +DRYNDQASGRALIEIRLCNERATPMPIPIGLWMFQTKLHVNAGGADVFLPVCDVLEQDL Sbjct 1 MDRYNDQASGRALIEIRLCNERATPMPIPIGLWMFQTKLHVNAGGADVFLPVCDVLEQDL 60 Query 61 AERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVNGSRRPSAVWTTWLPVAETPHTRARSVE 120 AERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVNGSRRPSAVWTTWLPVAETPHTRARSVE Sbjct 61 AERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVNGSRRPSAVWTTWLPVAETPHTRARSVE 120 Query 121 NALLSMDSRGGVT 133 NALLSMDSRGGVT Sbjct 121 NALLSMDSRGGVT 133 >gi|119714085|ref|YP_919227.1| helicase domain-containing protein [Nocardioides sp. JS614] gi|119525994|gb|ABL79364.1| helicase domain protein [Nocardioides sp. JS614] Length=1235 Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 92/134 (69%), Positives = 110/134 (83%), Gaps = 1/134 (0%) Query 1 VDRYNDQASGRALIEIRLCNERATPMPIPIGLWMFQTKLHVNAGGADVFLPVCDVLEQDL 60 VDRY+D GR L+EI LCN+R TPMPIP+ +WMFQTKL V+AGGA+VFLPV DVLEQD Sbjct 208 VDRYDDPTFGRVLVEIALCNDRETPMPIPLSMWMFQTKLLVDAGGAEVFLPVRDVLEQDW 267 Query 61 AERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVN-GSRRPSAVWTTWLPVAETPHTRARSV 119 E DEEV++LNLQYRNRLE+AIGRTCS W+V GSRR ++V T WLP+ ETP TRARSV Sbjct 268 PEHDEEVKRLNLQYRNRLEFAIGRTCSVDWTVKEGSRRATSVETKWLPIGETPQTRARSV 327 Query 120 ENALLSMDSRGGVT 133 ++ALLSMD+ V+ Sbjct 328 KDALLSMDALSKVS 341 >gi|329940573|ref|ZP_08289854.1| putative DNA helicase [Streptomyces griseoaurantiacus M045] gi|329300634|gb|EGG44531.1| putative DNA helicase [Streptomyces griseoaurantiacus M045] Length=1250 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 77/127 (61%), Positives = 92/127 (73%), Gaps = 1/127 (0%) Query 1 VDRYNDQASGRALIEIRLCNERATPMPIPIGLWMFQTKLHVNAGGADVFLPVCDVLEQDL 60 VDRY+D G LIE+ LCN+R TP IP+ W++QTKL V+AGGA+VFLPV DVL Sbjct 222 VDRYDDSERGCRLIEVALCNDRETPRKIPVEAWLYQTKLSVSAGGAEVFLPVNDVLLDTR 281 Query 61 AERDEEVRQLNLQYRNRLEYAIGRTCSAAWSV-NGSRRPSAVWTTWLPVAETPHTRARSV 119 E D+E+R+L LQYRNRLE+A GRTCS W V G+RR S VWTTWLPV+ETP T A + Sbjct 282 EEPDDELRRLRLQYRNRLEFAHGRTCSVDWQVAKGARRASEVWTTWLPVSETPQTAAEEI 341 Query 120 ENALLSM 126 ALL M Sbjct 342 GAALLDM 348 >gi|317126185|ref|YP_004100297.1| helicase [Intrasporangium calvum DSM 43043] gi|315590273|gb|ADU49570.1| helicase domain protein [Intrasporangium calvum DSM 43043] Length=1232 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 76/130 (59%), Positives = 93/130 (72%), Gaps = 4/130 (3%) Query 1 VDRYNDQASGRALIEIRLCNERATPMPIPIGLWMFQTKLHVNAGGADVFLPVCDVLEQDL 60 VD Y+D+ G +IE+ LCN+R TP IP+ W++QTKL V AG VFLPV DV E + Sbjct 209 VDCYDDRDRGACIIEVALCNDRETPPKIPVNAWLYQTKLQVTAGAEAVFLPVQDVTEPPI 268 Query 61 ---AERDEEVRQLNLQYRNRLEYAIGRTCSAAWSV-NGSRRPSAVWTTWLPVAETPHTRA 116 AERD+E+R LNLQYRNRLE+AIGRTCS W V N +RR +VWTTWLP +ETP T A Sbjct 269 DGRAERDDELRMLNLQYRNRLEFAIGRTCSVDWDVENAARRARSVWTTWLPQSETPQTTA 328 Query 117 RSVENALLSM 126 +E+ALL M Sbjct 329 EEIEDALLDM 338 >gi|325003372|ref|ZP_08124484.1| helicase domain protein [Pseudonocardia sp. P1] Length=1185 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 72/128 (57%), Positives = 94/128 (74%), Gaps = 1/128 (0%) Query 1 VDRYNDQASGRALIEIRLCNERATPMPIPIGLWMFQTKLHVNAGGADVFLPVCDVLEQDL 60 VDRY+D G +IE+ LCN++ TP IP+ W++QT+L V+AGGA+VFLPV D L Sbjct 155 VDRYDDADRGCRMIEVALCNDKVTPRKIPVDAWLYQTRLTVDAGGAEVFLPVTDPLLDAR 214 Query 61 AERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVN-GSRRPSAVWTTWLPVAETPHTRARSV 119 ERD+E+R+L LQYR+RLE+A+GRTCS W+V RR ++VWTTWLP +ETP T A V Sbjct 215 DERDDELRRLRLQYRDRLEFALGRTCSVDWAVAPDKRRATSVWTTWLPTSETPQTTAEEV 274 Query 120 ENALLSMD 127 E ALL M+ Sbjct 275 EAALLDME 282 >gi|269957108|ref|YP_003326897.1| helicase domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269305789|gb|ACZ31339.1| helicase domain protein [Xylanimonas cellulosilytica DSM 15894] Length=1252 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 68/117 (59%), Positives = 87/117 (75%), Gaps = 1/117 (0%) Query 11 RALIEIRLCNERATPMPIPIGLWMFQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVRQL 70 R ++E+ LCN+R TP IP+ WM+QT+L+V A G DVFLPV D LE + + EV +L Sbjct 222 RRIVEVALCNDRETPRQIPVDAWMYQTRLYVEADGEDVFLPVTDALEDTRLDAETEVARL 281 Query 71 NLQYRNRLEYAIGRTCSAAWSVN-GSRRPSAVWTTWLPVAETPHTRARSVENALLSM 126 LQYRNRLE+AIGRTCSA W+V G+RR + V TTW+PV+ETP T+AR +E ALL M Sbjct 282 QLQYRNRLEFAIGRTCSADWTVAPGARRATQVRTTWMPVSETPQTQAREIEGALLDM 338 >gi|269793674|ref|YP_003313129.1| helicase [Sanguibacter keddieii DSM 10542] gi|269095859|gb|ACZ20295.1| helicase family protein [Sanguibacter keddieii DSM 10542] Length=1254 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 61/122 (50%), Positives = 85/122 (70%), Gaps = 5/122 (4%) Query 10 GRALIEIRLCNERATPMPIPIGLWMFQTKLHV----NAGGADVFLPVCDVLEQDLAERDE 65 G+ ++E LCN+R TP IP W++QT L+V N DVFLPV D++ +D + D Sbjct 214 GKRIVEAALCNDRETPRTIPTDAWLYQTCLYVEADVNESETDVFLPVTDLMLEDRLDEDP 273 Query 66 EVRQLNLQYRNRLEYAIGRTCSAAWSV-NGSRRPSAVWTTWLPVAETPHTRARSVENALL 124 E+ +L+LQYR+RLE+A+GRTCS W+V G+RR + V TTWLP +ETP T+AR ++ ALL Sbjct 274 ELARLDLQYRDRLEFAVGRTCSVDWTVAKGARRATQVRTTWLPTSETPQTQAREIDGALL 333 Query 125 SM 126 M Sbjct 334 DM 335 >gi|325068192|ref|ZP_08126865.1| helicase domain protein [Actinomyces oris K20] Length=1296 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 69/142 (49%), Positives = 84/142 (60%), Gaps = 16/142 (11%) Query 1 VDRYNDQA-----SGRALIEIRLCNERATPMPIPIGLWMFQTKLHVNAGGADVFLPVCDV 55 VD Y D + GR LIE+ LCN++ TP IP+ WMFQT++HV+AG DVFLPV D Sbjct 221 VDSYRDTSPAGGPGGRYLIELALCNDQITPRRIPVHAWMFQTQIHVDAGNRDVFLPVHDP 280 Query 56 L----EQDLAERDEEVRQLNLQYRNRLEYAIGRTCSAAWSV-------NGSRRPSAVWTT 104 L D E +L LQYR+RLE+A+GRTCSA WSV + RR V TT Sbjct 281 LLPPAPGAQPASDPEEARLELQYRDRLEFAVGRTCSADWSVRKPSPGESAPRRAFLVRTT 340 Query 105 WLPVAETPHTRARSVENALLSM 126 W+P ETP T A V A L+M Sbjct 341 WMPTVETPQTAATPVPAAELNM 362 >gi|326774110|ref|ZP_08233392.1| helicase [Actinomyces viscosus C505] gi|326636249|gb|EGE37153.1| helicase [Actinomyces viscosus C505] Length=1296 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 67/142 (48%), Positives = 84/142 (60%), Gaps = 16/142 (11%) Query 1 VDRYNDQA-----SGRALIEIRLCNERATPMPIPIGLWMFQTKLHVNAGGADVFLPVCDV 55 VD Y D + GR LIE+ LCN++ TP IP+ WMFQT++HV+A DVFLPV D Sbjct 221 VDSYRDISPAGGPGGRYLIELALCNDQETPRRIPVHAWMFQTQIHVDADNRDVFLPVHDP 280 Query 56 LEQDL----AERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVN-------GSRRPSAVWTT 104 L D E +L LQYR+RLE+A+GRTCSA WS++ RR V TT Sbjct 281 LLPPAPGVQPASDPEEARLELQYRDRLEFAVGRTCSADWSLHKPPPGESAPRRAFQVRTT 340 Query 105 WLPVAETPHTRARSVENALLSM 126 W+P ETP T A V+ A L+M Sbjct 341 WMPTVETPQTTATPVQGAELNM 362 >gi|108797791|ref|YP_637988.1| helicase-like protein [Mycobacterium sp. MCS] gi|119866883|ref|YP_936835.1| helicase domain-containing protein [Mycobacterium sp. KMS] gi|108768210|gb|ABG06932.1| helicase-like protein [Mycobacterium sp. MCS] gi|119692972|gb|ABL90045.1| helicase domain protein [Mycobacterium sp. KMS] Length=1220 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 58/123 (48%), Positives = 77/123 (63%), Gaps = 7/123 (5%) Query 11 RALIEIRLCNERATPMPIPIGLWMFQTKLHVNA-GGADVFLPVCDVLEQDLAERDEEVRQ 69 R ++E+ L N++ T M P G W+FQTKL V A G VFLP DVL+ E D+E ++ Sbjct 197 RVIVELALSNDKVTDMNAPPGDWLFQTKLKVEANSGEAVFLPTRDVLQPGYDETDDERQR 256 Query 70 LNLQYRNRLEYAIGRTCSAAW------SVNGSRRPSAVWTTWLPVAETPHTRARSVENAL 123 L+LQYR+RLE+A+GRT S W + NG RR +V TTWLP A+ P T+ S A+ Sbjct 257 LDLQYRHRLEFAVGRTTSVNWDEPTDANGNGIRRAVSVETTWLPTADVPQTKPGSAGAAI 316 Query 124 LSM 126 SM Sbjct 317 TSM 319 >gi|328885790|emb|CCA59029.1| helicase [Streptomyces venezuelae ATCC 10712] Length=1286 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/117 (42%), Positives = 66/117 (57%), Gaps = 13/117 (11%) Query 13 LIEIRLCNERATPMPIPIGLWMFQTKLHVNA--GGADVFLPVCDVLEQDLAERDE----- 65 ++E+ L N + P +W+FQT+LHV A GG+ VFLP+ D L D A +DE Sbjct 216 VVELALVNAQEEPAAAKDTVWLFQTELHVTALDGGSAVFLPISDPL--DDASQDEDAWGL 273 Query 66 ---EVRQLNLQYRNRLEYAIGRTCSA-AWSVNGSRRPSAVWTTWLPVAETPHTRARS 118 E + L L YR+RL++A GR + +GSRR A+ TTWLP + P T A S Sbjct 274 DDPEEQHLTLLYRDRLKHAAGRNVAVDVVREDGSRRARALTTTWLPAHDVPATIAPS 330 >gi|297561673|ref|YP_003680647.1| helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846121|gb|ADH68141.1| helicase domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length=1314 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/126 (39%), Positives = 66/126 (53%), Gaps = 9/126 (7%) Query 11 RALIEIRLCNERATPMPIPIGLWMFQTKLHVNA--GGADVFLPVCDVLEQDL-AERDEEV 67 R +E+ L N R P +W+FQ +L V A G + VFLPV D L+ + A D E Sbjct 250 RRTVELNLVNNRLPVHPNGDTMWLFQAQLSVTALDGSSPVFLPVDDPLDGGVPASDDPEE 309 Query 68 RQLNLQYRNRLEYAIGRTCSAAWSV-NGSRRPSAVWTTWLPVAETPHTRA-----RSVEN 121 L L YR+ L+YA GR + V G+RR + TTWLP + P T A ++ + Sbjct 310 LHLRLLYRDLLKYADGRNIAVEAEVAEGARRAHRLTTTWLPHHDVPATTAAVGAGSALAS 369 Query 122 ALLSMD 127 A LSMD Sbjct 370 AQLSMD 375 >gi|269126750|ref|YP_003300120.1| helicase domain-containing protein [Thermomonospora curvata DSM 43183] gi|268311708|gb|ACY98082.1| helicase domain protein [Thermomonospora curvata DSM 43183] Length=1287 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/129 (38%), Positives = 65/129 (51%), Gaps = 11/129 (8%) Query 10 GRALIEIRLCNERATPMPIPIGLWMFQTKLHVNA--GGADVFLPVCDVLEQDLAER--DE 65 GR ++E+ L N++ P+ W+FQ +L V A G +FLPV D + DL D Sbjct 226 GRRVVEVALVNQQQEPVSYKDVAWLFQPELTVTALDGTEAIFLPVDDPAD-DLPTSGGDP 284 Query 66 EVRQLNLQYRNRLEYAIGRTCSAAWSV-NGSRRPSAVWTTWLPVAETPHTRARS-----V 119 E L L YRN YA GR + V G RR + TTWLP + P T A + + Sbjct 285 EEAHLRLLYRNERRYAAGRNVAVHAEVAEGERRAHRLTTTWLPAYDVPATVAPTGPGTPL 344 Query 120 ENALLSMDS 128 E+ LSMD+ Sbjct 345 EHVELSMDA 353 >gi|258650718|ref|YP_003199874.1| helicase domain-containing protein [Nakamurella multipartita DSM 44233] gi|258553943|gb|ACV76885.1| helicase domain protein [Nakamurella multipartita DSM 44233] Length=1226 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/139 (33%), Positives = 65/139 (47%), Gaps = 17/139 (12%) Query 3 RYNDQASGRA--LIEIRLCNERATPMPIPIGLWMFQTKLHVNAG--GADVFLPVCDVLEQ 58 R +D SGR ++ + L N +A + W+FQ L V AG G+ +F P+ DV Sbjct 186 RDHDDGSGRPHRIVRVSLVNGQAEDVTPKDLAWLFQAGLVVTAGVGGSSIFEPIGDVEAG 245 Query 59 DLAERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVNGSRRPSA-----VWTTWLPVAETPH 113 D E + L L +RN+L +A G +V+ RRP + TTWLP + P Sbjct 246 APVSDDPEEQHLALLFRNQLRHASGHNV----AVHVDRRPGERTAHRLSTTWLPSHDVPQ 301 Query 114 TRARSVENAL----LSMDS 128 A + L LSMD+ Sbjct 302 VSATADPERLRGLELSMDA 320 >gi|111219759|ref|YP_710553.1| hypothetical protein FRAAL0262 [Frankia alni ACN14a] gi|111147291|emb|CAJ58939.1| conserved hypothetical protein; putative superfamily II DNA and RNA helicase [Frankia alni ACN14a] Length=1340 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/117 (36%), Positives = 53/117 (46%), Gaps = 9/117 (7%) Query 9 SGRALIEIRLCNERATPMPIPIGLWMFQTKLHVNA--GGADVFLPVCD------VLEQDL 60 SGR ++E+ L N + P W+FQ +L V A G VFLPV D Sbjct 241 SGRRIVELTLVNGQPEPPSHADTAWLFQPRLTVTALDGERAVFLPVDDPEDGVGADHDGH 300 Query 61 AERDEEVRQLNLQYRNRLEYAIGRTCSAAWSV-NGSRRPSAVWTTWLPVAETPHTRA 116 D E L L YR + YA GR + SV +G R + TTWLP + P T A Sbjct 301 DHEDHEELHLRLLYRTQRRYANGRNVAVHPSVRDGERCAHRLETTWLPTYDVPSTIA 357 >gi|254787983|ref|YP_003075412.1| helicase domain-containing protein [Teredinibacter turnerae T7901] gi|237686782|gb|ACR14046.1| helicase domain protein [Teredinibacter turnerae T7901] Length=1149 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 31/92 (34%), Positives = 44/92 (48%), Gaps = 14/92 (15%) Query 34 MFQTKLHVNAGGADVF-------LPVCDVLEQDLAERDEEVRQLNLQYRNRLEYAIGRTC 86 +FQTKL +NA D P D+ E+D+ E+ L+L YR + IG C Sbjct 245 LFQTKLELNATDRDSLPSSIIAPYPSVDIFEKDIEEK-----SLDLLYRQHQTFGIGHGC 299 Query 87 SAAWSVNGS--RRPSAVWTTWLPVAETPHTRA 116 +A WS + + +W+T LP ET T A Sbjct 300 AADWSGKNEAVSKINKLWSTALPTFETWATTA 331 >gi|309791581|ref|ZP_07686075.1| helicase-like protein [Oscillochloris trichoides DG6] gi|308226361|gb|EFO80095.1| helicase-like protein [Oscillochloris trichoides DG6] Length=1124 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 55/120 (46%), Gaps = 7/120 (5%) Query 14 IEIRLCNERATPMPIPIGLWMFQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVRQLNLQ 73 + + N R +P + FQ ++HV V P L AE D++V +L Sbjct 191 VSVYFVNNRTPSKDVPDLAYAFQAEIHVTCEHPFVARPNLSGLHA--AEWDDQV--ADLH 246 Query 74 YRNRLEYAIGRTCSAAWSV-NGSRRPSAVWTTWLPVAETPHTRARSVENALLSMDSRGGV 132 Y + EYA+G SA W + +G R A+ + W+P AE T V + L MD+ G + Sbjct 247 YADTPEYAVGHGVSADWELLDGECR--AIRSAWIPAAEVEKTVTVHVPDVELQMDALGNL 304 >gi|312200734|ref|YP_004020795.1| helicase domain protein [Frankia sp. EuI1c] gi|311232070|gb|ADP84925.1| helicase domain protein [Frankia sp. EuI1c] Length=1163 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/77 (36%), Positives = 35/77 (46%), Gaps = 4/77 (5%) Query 34 MFQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVN 93 +FQ L A GA P D+ + D E + + L YR L YAIG C+A W + Sbjct 274 LFQMGLRATAQGALRITPYPDITQN---RSDPEEQSIALLYRKHLTYAIGHGCAAGWRIT 330 Query 94 GSRRPSAVWTTWLPVAE 110 G AVW +P E Sbjct 331 GEPG-DAVWAEPMPAHE 346 >gi|298505468|gb|ADI84191.1| conserved hypothetical protein [Geobacter sulfurreducens KN400] Length=1216 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/105 (32%), Positives = 46/105 (44%), Gaps = 2/105 (1%) Query 13 LIEIRLCNERATPMPIPIGLWMFQTKLHV-NAGGADVFLPVCDVLEQDLAERDEEVRQLN 71 L+ + L N + T L FQT V P +V+ + DEE + Sbjct 249 LLTVSLVNRQKTDSGRIDELCFFQTGFKVWGVSDRPWIAPYPEVIRPNRKAADEE-EIIR 307 Query 72 LQYRNRLEYAIGRTCSAAWSVNGSRRPSAVWTTWLPVAETPHTRA 116 L YR+R +AIG C+A+W R VWT +P +TP T A Sbjct 308 LLYRDRQTFAIGHGCAASWVDGRPARVKEVWTETMPTFQTPVTSA 352 >gi|323495149|ref|ZP_08100234.1| hypothetical protein VIBR0546_08445 [Vibrio brasiliensis LMG 20546] gi|323310589|gb|EGA63768.1| hypothetical protein VIBR0546_08445 [Vibrio brasiliensis LMG 20546] Length=1037 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/47 (37%), Positives = 29/47 (62%), Gaps = 0/47 (0%) Query 64 DEEVRQLNLQYRNRLEYAIGRTCSAAWSVNGSRRPSAVWTTWLPVAE 110 D+E ++LNL YR R+ +A+G + WS +G P+ ++T +P E Sbjct 191 DDEQQELNLAYRKRVPWAVGHGVAVDWSFDGEASPTKLYTEMMPTHE 237 >gi|196035147|ref|ZP_03102553.1| helicase domain protein [Bacillus cereus W] gi|195992211|gb|EDX56173.1| helicase domain protein [Bacillus cereus W] Length=1047 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 33/97 (35%), Positives = 43/97 (45%), Gaps = 18/97 (18%) Query 34 MFQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVRQLNLQ----YRNRLEYAIGRTCSAA 89 MFQTKL V +V E+ +A+ Q NL+ YR+ EYAIG Sbjct 175 MFQTKLAV------------EVKEESIAKFSSRADQWNLEDELLYRHVNEYAIGHGVGIG 222 Query 90 WSVNGSRRPSAVWTTWLPVAETPHTRARSVENALLSM 126 +S S + TTWLP AE P R ++ SM Sbjct 223 YSF--SEGKCLLETTWLPTAEVPIVEHREIKELTTSM 257 >gi|116751267|ref|YP_847954.1| helicase domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116700331|gb|ABK19519.1| helicase domain protein [Syntrophobacter fumaroxidans MPOB] Length=1285 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 40/133 (31%), Positives = 57/133 (43%), Gaps = 16/133 (12%) Query 9 SGRALIEIRLCNERATPMPIPIGLWMFQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVR 68 +G L+ + L N + P W+FQ +L V +L D E DEE Sbjct 302 NGDRLVTLFLVNTQTMPEQNQDQAWIFQPELSVRDMEGRAVFRRRPILRAD--EFDEERE 359 Query 69 QLNLQYRNRLEYAIGRTCS--AAWSVNGSRRPSAVWTTWLP-----VAETPHTRA----- 116 L + YR+R+E+A+G S A S + R + V T LP V ETP Sbjct 360 ALEMIYRDRVEFAVGHGISVHATVSEDDRERATEVRTAVLPEYEIQVTETPGLEPEDRPA 419 Query 117 --RSVENALLSMD 127 R +E+ LL M+ Sbjct 420 MRRMIEDGLLDME 432 >gi|219883146|ref|YP_002478308.1| helicase domain protein [Cyanothece sp. PCC 7425] gi|219867271|gb|ACL47609.1| helicase domain protein [Cyanothece sp. PCC 7425] Length=1323 Score = 42.4 bits (98), Expect = 0.026, Method: Compositional matrix adjust. Identities = 31/116 (27%), Positives = 50/116 (44%), Gaps = 7/116 (6%) Query 13 LIEIRLCNERATPMPIPIGLWMFQTKLHVNAGGAD---VFLPVCDVLEQDLAE--RDEEV 67 +I + L N + P +P W+FQ +L V + D +F+ Q + + E Sbjct 344 IISLFLVNGQQEPEKLPDQAWLFQPELSVESADPDQPDIFIRKAQPRSQGKLDPVQYAEA 403 Query 68 RQLNLQYRNRLEYAIGRTCS--AAWSVNGSRRPSAVWTTWLPVAETPHTRARSVEN 121 + + + YRN +E+A+G A S R + T +P E P T A S E Sbjct 404 QAMEMLYRNHVEFAVGHGVGVHAELSATDCHRAVRLQTAVVPAYEVPKTDAPSAEE 459 >gi|288919499|ref|ZP_06413830.1| helicase domain protein [Frankia sp. EUN1f] gi|288349102|gb|EFC83348.1| helicase domain protein [Frankia sp. EUN1f] Length=1058 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 19/49 (39%), Positives = 28/49 (58%), Gaps = 0/49 (0%) Query 64 DEEVRQLNLQYRNRLEYAIGRTCSAAWSVNGSRRPSAVWTTWLPVAETP 112 D+E ++L L YR YA+G +AAWS +G P V T+++P P Sbjct 223 DDEAQELELLYRTAPTYAVGHGVAAAWSGDGRETPEWVHTSYVPAHVVP 271 >gi|189500354|ref|YP_001959824.1| helicase domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189495795|gb|ACE04343.1| helicase domain protein [Chlorobium phaeobacteroides BS1] Length=1215 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 19/53 (36%), Positives = 27/53 (51%), Gaps = 0/53 (0%) Query 60 LAERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVNGSRRPSAVWTTWLPVAETP 112 +E DE+ + L L YR+ +AIG C+A W PS V+ +P E P Sbjct 304 FSELDEDEQSLALLYRDSSTWAIGHGCAAGWDAELGNSPSCVYADVMPAVELP 356 >gi|344341849|ref|ZP_08772764.1| helicase domain-containing protein [Thiocapsa marina 5811] gi|343798317|gb|EGV16276.1| helicase domain-containing protein [Thiocapsa marina 5811] Length=1169 Score = 41.6 bits (96), Expect = 0.044, Method: Compositional matrix adjust. Identities = 32/101 (32%), Positives = 45/101 (45%), Gaps = 12/101 (11%) Query 32 LWMFQTKLHVNAGGADVFLPVCDVLEQDLAERD----EEVRQLNLQYRNRLEYAIGRTCS 87 +W+FQ KL V G+ + DL+ D EE L + YR++ E+A+G S Sbjct 199 VWLFQPKLRVRGTGSAPIFVQRKGGKADLSLMDPLTREETETLEMLYRHQREFAVGHGIS 258 Query 88 -------AAWSVNGSRRPSAVWTTWLPVAETPHTRARSVEN 121 A+ V G R V T W+P E P RSV + Sbjct 259 VHATLPEASGEVPGE-RAMQVETEWVPRFEVPQQTPRSVAD 298 >gi|75907551|ref|YP_321847.1| helicase-like protein [Anabaena variabilis ATCC 29413] gi|75701276|gb|ABA20952.1| Helicase-like protein [Anabaena variabilis ATCC 29413] Length=1159 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 29/96 (31%), Positives = 47/96 (49%), Gaps = 4/96 (4%) Query 33 WMFQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVRQLNLQYRNRLEYAIGRTCSAAWSV 92 ++FQT L ++ V P ++ +D + DE V +LQYR+ EYA+G SA Sbjct 242 YIFQTSLIIHTPEPLVARP--NLRGRDNHDWDENV--ADLQYRDDYEYAVGHNVSAIALT 297 Query 93 NGSRRPSAVWTTWLPVAETPHTRARSVENALLSMDS 128 N + T W+P A+ A V++ L M++ Sbjct 298 NPDGSCQEIRTAWIPTADVEKVIAAQVKDVELGMEA 333 >gi|163848463|ref|YP_001636507.1| helicase domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222526392|ref|YP_002570863.1| helicase domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163669752|gb|ABY36118.1| helicase domain protein [Chloroflexus aurantiacus J-10-fl] gi|222450271|gb|ACM54537.1| helicase domain protein [Chloroflexus sp. Y-400-fl] Length=1347 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 27/82 (33%), Positives = 38/82 (47%), Gaps = 4/82 (4%) Query 14 IEIRLCNERATPMP----IPIGLWMFQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVRQ 69 I I L NER P L+ Q ++H++AG + + + + LAE E Sbjct 169 ISIFLVNERIVPEESRPQTEDYLFQPQIRVHLSAGTHLIPVQIAETESTLLAEETREEES 228 Query 70 LNLQYRNRLEYAIGRTCSAAWS 91 L LQYR+R A G C+A W Sbjct 229 LALQYRHRTALARGHMCAAIWK 250 >gi|229552045|ref|ZP_04440770.1| probable DNA helicase [Lactobacillus rhamnosus LMS2-1] gi|229314622|gb|EEN80595.1| probable DNA helicase [Lactobacillus rhamnosus LMS2-1] Length=1170 Score = 40.4 bits (93), Expect = 0.098, Method: Composition-based stats. Identities = 22/76 (29%), Positives = 40/76 (53%), Gaps = 1/76 (1%) Query 35 FQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVNG 94 FQT++ +NA + F DV++ L + +E +++ +YRN+ +AIG S W Sbjct 280 FQTQVILNATRSLKFYASEDVMDTHLDQLSKEDQKIRFEYRNKKTFAIGHGISVGWLPQA 339 Query 95 SRRPSAVWTTWLPVAE 110 S ++T ++P E Sbjct 340 GEVQS-IFTEYIPTYE 354 >gi|258539459|ref|YP_003173958.1| helicase domain-containing protein [Lactobacillus rhamnosus Lc 705] gi|257151135|emb|CAR90107.1| Helicase domain protein [Lactobacillus rhamnosus Lc 705] Length=1170 Score = 40.4 bits (93), Expect = 0.099, Method: Composition-based stats. Identities = 22/76 (29%), Positives = 40/76 (53%), Gaps = 1/76 (1%) Query 35 FQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVNG 94 FQT++ +NA + F DV++ L + +E +++ +YRN+ +AIG S W Sbjct 280 FQTQVILNATRSLKFYASEDVMDTHLDQLSKEDQKIRFEYRNKKTFAIGHGISVGWLPQA 339 Query 95 SRRPSAVWTTWLPVAE 110 S ++T ++P E Sbjct 340 GEVQS-IFTEYIPTYE 354 >gi|229056691|ref|ZP_04196095.1| hypothetical protein bcere0026_8110 [Bacillus cereus AH603] gi|228720627|gb|EEL72188.1| hypothetical protein bcere0026_8110 [Bacillus cereus AH603] Length=1172 Score = 40.4 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 31/106 (30%), Positives = 47/106 (45%), Gaps = 6/106 (5%) Query 7 QASGRALIEIRLCNERATPMPIPIGLWMFQTKLHVNAGGADVF--LPVCDVLEQDLAERD 64 + SG+ +I I + N A P L +FQ + +N F P +++ L E + Sbjct 231 EVSGKYIITISVTNRSAIPNFNRQQLILFQAIMSINTPDGHFFSVYPKQYEMKEKLTEEE 290 Query 65 EEVRQLNLQYRNRLEYAIGRTCSAAWSVNGSRRPSAVWTTWLPVAE 110 L YRN YA G C+A W N S+ + TT++P E Sbjct 291 ASTELL---YRNEDVYAFGHGCAANWEQN-SKNIQQLSTTFMPEYE 332 >gi|336391197|ref|ZP_08572596.1| helicase domain-containing protein [Lactobacillus coryniformis subsp. torquens KCTC 3535] Length=1073 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 28/97 (29%), Positives = 50/97 (52%), Gaps = 5/97 (5%) Query 35 FQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVRQLNLQYRNRLEYAIGRTCSAAWS-VN 93 FQ ++ V AG VF DV ++ EE +L Y+ + YA G SA W+ +N Sbjct 284 FQCEISVQAGNEVVFYASEDVEFPNIDHLQEEDAKLLFSYQGKKTYAFGHGVSATWTPIN 343 Query 94 GSRRPSAVWTTWLPVAE-TPHT-RARSVENALLSMDS 128 ++P+ + T+++P + P + + ++ A+L DS Sbjct 344 --KKPTVIKTSYIPTFDIVPMSFKINKLDPAILRPDS 378 >gi|302343994|ref|YP_003808523.1| helicase domain protein [Desulfarculus baarsii DSM 2075] gi|301640607|gb|ADK85929.1| helicase domain protein [Desulfarculus baarsii DSM 2075] Length=1236 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 39/133 (30%), Positives = 56/133 (43%), Gaps = 16/133 (12%) Query 9 SGRALIEIRLCNERATPMPIPIGLWMFQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVR 68 +G L+ + L N + P W+FQ +L V +L D E DEE Sbjct 257 NGDRLVTLFLVNTQTMPEQNQDQAWIFQPELSVRDMEGRAVFRRRPILRAD--EFDEERE 314 Query 69 QLNLQYRNRLEYAIGRTCSAAWSVNGSRRPSA--VWTTWLP-----VAETPHTRA----- 116 L + YR+R+E+A+G S +V+ R A V T LP V ETP Sbjct 315 ALEMIYRDRVEFAVGHGISVHATVSEEDRERATEVRTAVLPEYEIQVTETPGLEPEDRPA 374 Query 117 --RSVENALLSMD 127 R + + LL M+ Sbjct 375 MRRMIADGLLDME 387 >gi|344338976|ref|ZP_08769906.1| helicase domain-containing protein [Thiocapsa marina 5811] gi|343800896|gb|EGV18840.1| helicase domain-containing protein [Thiocapsa marina 5811] Length=1169 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/101 (31%), Positives = 44/101 (44%), Gaps = 12/101 (11%) Query 32 LWMFQTKLHVNAGGADVFLPVCDVLEQDLAERD----EEVRQLNLQYRNRLEYAIGRTCS 87 +W+FQ KL V + + DL+ D EE L + YR++ E+A+G S Sbjct 199 VWLFQPKLRVRGSSSAPIFVQRKGAKADLSLMDPLTREETETLEMLYRHQREFAVGHGIS 258 Query 88 -------AAWSVNGSRRPSAVWTTWLPVAETPHTRARSVEN 121 A+ V G R V T W+P E P RSV + Sbjct 259 VHATVPEASGEVPGE-RAMQVETEWVPRFEVPQQTPRSVAD 298 >gi|225571374|ref|ZP_03780370.1| hypothetical protein CLOHYLEM_07472 [Clostridium hylemonae DSM 15053] gi|225159850|gb|EEG72469.1| hypothetical protein CLOHYLEM_07472 [Clostridium hylemonae DSM 15053] Length=1218 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 24/79 (31%), Positives = 38/79 (49%), Gaps = 4/79 (5%) Query 34 MFQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVN 93 +FQ ++ +N+ + CD D D E + L+L YRN+ YA G S W ++ Sbjct 300 IFQPRITINSMENN--FRFCDYTGNDF-HGDAEEKSLSLLYRNKKVYASGHGTSVDWEID 356 Query 94 GSRRPSAVWTTWLPVAETP 112 S +W +LP+ E P Sbjct 357 QSGL-GILWNDFLPMKEVP 374 >gi|320094596|ref|ZP_08026362.1| hypothetical protein HMPREF9005_0974 [Actinomyces sp. oral taxon 178 str. F0338] gi|319978511|gb|EFW10088.1| hypothetical protein HMPREF9005_0974 [Actinomyces sp. oral taxon 178 str. F0338] Length=1167 Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust. Identities = 25/77 (33%), Positives = 33/77 (43%), Gaps = 3/77 (3%) Query 34 MFQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVN 93 +FQ V A P +V + RDEE + ++L YRN+ YAIG C+A W Sbjct 256 LFQMGFTVTAVDGLTIEPYPEVAR---SGRDEEEQSIDLLYRNKRTYAIGHGCAAEWDEG 312 Query 94 GSRRPSAVWTTWLPVAE 110 V LP E Sbjct 313 PGEAVCQVRAVALPAYE 329 >gi|157961101|ref|YP_001501135.1| helicase domain-containing protein [Shewanella pealeana ATCC 700345] gi|157846101|gb|ABV86600.1| helicase domain protein [Shewanella pealeana ATCC 700345] Length=1188 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 33/114 (29%), Positives = 53/114 (47%), Gaps = 8/114 (7%) Query 10 GRALIEIRLCNERATPMPI---PIGLWMFQTKLHVNAG-GADVFLPVCDV-LEQDLAERD 64 G+ + + L N+R P ++ Q ++ V A G+ VFL D+ LE D +D Sbjct 207 GQRAVSLFLVNQRQKGDPKDSEKDKQFLMQAQMEVRASDGSAVFLAKDDIELEHD-GSQD 265 Query 65 EEVRQLNLQYRNRLEYAIGRTCSAAWS--VNGSRRPSAVWTTWLPVAETPHTRA 116 E + NL YR+ E+A G +A W + S++ T ++P E P A Sbjct 266 PEAQVNNLLYRHAREFATGHGVAAEWDGLTPDGKSVSSIRTEFIPSFEVPKVIA 319 >gi|75812883|ref|YP_320500.1| helicase-like [Anabaena variabilis ATCC 29413] gi|75705639|gb|ABA25311.1| Helicase-like protein [Anabaena variabilis ATCC 29413] Length=1131 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/65 (34%), Positives = 31/65 (48%), Gaps = 2/65 (3%) Query 64 DEEVRQLNLQYRNRLEYAIGRTCSAAWSVNGSRRPSAVWTTWLPVAETPHTRARSVENAL 123 DE+V +LQYR+ EYA+G SA N V T W+P+A+ V Sbjct 243 DEKV--ADLQYRDDYEYAVGHNVSAVAVTNDDATCQEVRTAWMPIADVEKVVPEKVPGVE 300 Query 124 LSMDS 128 L M++ Sbjct 301 LGMEA 305 >gi|162451511|ref|YP_001613878.1| superfamily II DNA/RNA helicase [Sorangium cellulosum 'So ce 56'] gi|161162093|emb|CAN93398.1| superfamily II DNA and RNA helicase [Sorangium cellulosum 'So ce 56'] Length=1124 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 22/65 (34%), Positives = 33/65 (51%), Gaps = 0/65 (0%) Query 62 ERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVNGSRRPSAVWTTWLPVAETPHTRARSVEN 121 E DE+ R L L +R+ E+A+G S V + + + TT LP E P R +++ Sbjct 233 EGDEDQRALALAFRDHREWAVGHNTSVERPVEKNGKVLRLRTTQLPCFEVPRVGHRELKD 292 Query 122 ALLSM 126 A L M Sbjct 293 ATLGM 297 >gi|302554831|ref|ZP_07307173.1| helicase [Streptomyces viridochromogenes DSM 40736] gi|302472449|gb|EFL35542.1| helicase [Streptomyces viridochromogenes DSM 40736] Length=1049 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 29/83 (35%), Positives = 39/83 (47%), Gaps = 4/83 (4%) Query 34 MFQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVN 93 +FQ +L V V LP V LA RD E R+L LQYR+ + +A+G C+ Sbjct 185 LFQCRLTVRPADGTV-LPYPSVR---LASRDPEERELRLQYRHVVTHAVGHGCAVREEHG 240 Query 94 GSRRPSAVWTTWLPVAETPHTRA 116 + + LP AE P RA Sbjct 241 EQGGVALLACEALPRAEVPAIRA 263 >gi|196044233|ref|ZP_03111469.1| helicase domain protein [Bacillus cereus 03BB108] gi|196024872|gb|EDX63543.1| helicase domain protein [Bacillus cereus 03BB108] Length=1047 Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 31/97 (32%), Positives = 41/97 (43%), Gaps = 18/97 (18%) Query 34 MFQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVRQLNLQ----YRNRLEYAIGRTCSAA 89 MFQTKL V +V E+ +A+ Q NL+ YR+ EYAIG Sbjct 175 MFQTKLAV------------EVKEESIAKFSSRADQWNLEDELLYRHVNEYAIGHGVGIG 222 Query 90 WSVNGSRRPSAVWTTWLPVAETPHTRARSVENALLSM 126 S S + TTWLP E P + ++ SM Sbjct 223 CSF--SEGKCLLETTWLPTTEVPIVEHKEIKELKTSM 257 >gi|27375977|ref|NP_767506.1| hypothetical protein blr0866 [Bradyrhizobium japonicum USDA 110] gi|27349116|dbj|BAC46131.1| blr0866 [Bradyrhizobium japonicum USDA 110] Length=1191 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 26/80 (33%), Positives = 41/80 (52%), Gaps = 6/80 (7%) Query 33 WMFQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVRQLNLQYRNRLEYAIGRTCSAAWSV 92 + FQ +L + F P D+ + +D +++ +L YR+ E+A+GR +A WS Sbjct 255 FAFQARLELVCPSG--FQPRRDL--SGMRTKDGDLQLADLHYRDIREWAVGRNAAAGWSA 310 Query 93 --NGSRRPSAVWTTWLPVAE 110 N + VWT LPVAE Sbjct 311 PENEATAVQRVWTDPLPVAE 330 >gi|221369952|ref|YP_002521048.1| DNA helicase [Rhodobacter sphaeroides KD131] gi|221163004|gb|ACM03975.1| DNA helicase [Rhodobacter sphaeroides KD131] Length=1052 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 26/96 (28%), Positives = 43/96 (45%), Gaps = 3/96 (3%) Query 34 MFQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVN 93 +FQ + V F+P + + A +++ R L YRN ++A+G TCSA W Sbjct 198 LFQFSMVVECEDECRFVPKPERIGS--ASDEDDARASALLYRNVQQFAVGHTCSAMWDEP 255 Query 94 GSRRPSAVWTTWLPVAETPHTRARSVENALLSMDSR 129 + V T+W P + T H + + D+R Sbjct 256 MEGKVHQVRTSWFPES-TVHVVSAEGDTEFKKADAR 290 >gi|194015384|ref|ZP_03054000.1| helicase domain protein [Bacillus pumilus ATCC 7061] gi|194012788|gb|EDW22354.1| helicase domain protein [Bacillus pumilus ATCC 7061] Length=1040 Score = 37.4 bits (85), Expect = 0.71, Method: Composition-based stats. Identities = 26/93 (28%), Positives = 43/93 (47%), Gaps = 10/93 (10%) Query 34 MFQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVN 93 MFQ+ L V+ +P V + ++ D+ Q L YR++ E AIG W Sbjct 183 MFQSSLKVH-------IPTIHV-AKFTSKADQYHVQNELFYRDKEEIAIGHGVGVDWKTV 234 Query 94 GSRRPSAVWTTWLPVAETPHTRARSVENALLSM 126 G+ + +++TW+P E P+ +EN M Sbjct 235 GN--ITTIYSTWMPRFELPNVEHCKIENQSFKM 265 >gi|254384439|ref|ZP_04999780.1| helicase [Streptomyces sp. Mg1] gi|194343325|gb|EDX24291.1| helicase [Streptomyces sp. Mg1] Length=1039 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/57 (39%), Positives = 31/57 (55%), Gaps = 1/57 (1%) Query 60 LAERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVNGSRRPSAVWTTWLPVAETPHTRA 116 LA RD E ++L LQYR+ +A+G C+ +G + + LP AE P TRA Sbjct 207 LASRDPEEQELRLQYRHVRTHAVGHGCAVEECRDGEAV-TGLRAVVLPEAEVPATRA 262 >gi|218709636|ref|YP_002417257.1| putative helicase family protein [Vibrio splendidus LGP32] gi|218322655|emb|CAV18831.1| putative helicase family protein [Vibrio splendidus LGP32] Length=1345 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 38/134 (29%), Positives = 58/134 (44%), Gaps = 17/134 (12%) Query 9 SGRALIEIRLCNERATPMPIPIGLWMFQTKLHVNA----GGADVFL--PVCDVLEQDLAE 62 +G L+ + L N + P W+FQ ++ +A DVF PV +DL Sbjct 336 NGDRLVTVFLVNTQEEPESNRDTAWVFQPEISASAVSESSNKDVFRKRPVLKPDGEDL-- 393 Query 63 RDEEVRQLNLQYRNRLEYAIGRTCSAAWSVNGS--RRPSAVWTTWLPVAETPHTRARSVE 120 E L + YRN++E+A G + +V+ R S V T +P E P T + Sbjct 394 ---ERESLEMVYRNQVEFASGHGIAVHANVSSEDVERASKVKTVVMPQYEVPVTEVPGLR 450 Query 121 N----ALLSMDSRG 130 + AL +M S G Sbjct 451 DGDRPALKAMVSGG 464 >gi|121608167|ref|YP_995974.1| helicase domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121552807|gb|ABM56956.1| helicase domain protein [Verminephrobacter eiseniae EF01-2] Length=1321 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 36/114 (32%), Positives = 51/114 (45%), Gaps = 11/114 (9%) Query 8 ASGRALIEIRLCNERATPMPIPIGLWMFQTKLHVNA---GGADVFLPVCDVLEQDLAERD 64 A+G L+ + L N + P W+FQ +L V A V VL+ D D Sbjct 320 ANGDRLVTLFLVNAQEEPDTNRDTAWLFQPELIVRAEAEASKRVIFRRRPVLDAD--GND 377 Query 65 EEVRQLNLQYRNRLEYAIGRTCSA-AWSVNGSRRPSAVWTTWLP-----VAETP 112 E L + YRNR+E+A+G + A + + + V TT LP V ETP Sbjct 378 PERESLEMIYRNRVEFAVGHGVAVHAETADDVTLATEVRTTVLPQYEVQVTETP 431 >gi|332661971|ref|YP_004451440.1| helicase domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332337468|gb|AEE54567.1| helicase domain-containing protein [Haliscomenobacter hydrossis DSM 1100] Length=1225 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 21/77 (28%), Positives = 41/77 (54%), Gaps = 8/77 (10%) Query 34 MFQTKLHVNAGGADVFLPVCDVLEQDLAERDEEVRQLNLQYRNRLEYAIGRTCSAAWSVN 93 +FQ ++ + + FLP + L D+E ++++ YR+ YAIG CS +W+ + Sbjct 314 IFQAEIKLTSNN---FLPYKEFASDKLM-LDDEAKEIDFIYRSINSYAIGHNCSTSWNED 369 Query 94 GSRRPSAVWTTWLPVAE 110 + + TT++PV + Sbjct 370 ----LAEIKTTFMPVLD 382 >gi|345455466|gb|EEO46987.2| helicase domain-containing protein [Bacteroides dorei 5_1_36/D4] Length=1360 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 20/49 (41%), Positives = 26/49 (54%), Gaps = 1/49 (2%) Query 64 DEEVRQLNLQYRNRLEYAIGRTCSAAWSVNGSRRPSAVWTTWLPVAETP 112 D EV L YRN +YAIG CSA W + + V + ++P ETP Sbjct 426 DCEVSSLQYLYRNIEDYAIGHICSANWYYDNNGIIH-VCSEFMPSVETP 473 >gi|237724715|ref|ZP_04555196.1| helicase domain-containing protein [Bacteroides sp. D4] Length=1153 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 20/49 (41%), Positives = 26/49 (54%), Gaps = 1/49 (2%) Query 64 DEEVRQLNLQYRNRLEYAIGRTCSAAWSVNGSRRPSAVWTTWLPVAETP 112 D EV L YRN +YAIG CSA W + + V + ++P ETP Sbjct 219 DCEVSSLQYLYRNIEDYAIGHICSANWYYDNNGIIH-VCSEFMPSVETP 266 Lambda K H 0.320 0.133 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130457467840 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40