BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1948c Length=116 Score E Sequences producing significant alignments: (Bits) Value gi|15609085|ref|NP_216464.1| hypothetical protein Rv1948c [Mycob... 238 3e-61 gi|31793140|ref|NP_855633.1| hypothetical protein Mb1983c [Mycob... 234 2e-60 gi|289574631|ref|ZP_06454858.1| conserved hypothetical protein [... 232 1e-59 gi|254818369|ref|ZP_05223370.1| hypothetical protein MintA_00500... 68.2 4e-10 gi|342859307|ref|ZP_08715961.1| hypothetical protein MCOL_10523 ... 63.2 1e-08 gi|293401739|ref|ZP_06645880.1| glucose-1-phosphate thymidylyltr... 35.8 2.1 >gi|15609085|ref|NP_216464.1| hypothetical protein Rv1948c [Mycobacterium tuberculosis H37Rv] gi|15841419|ref|NP_336456.1| hypothetical protein MT1998.1 [Mycobacterium tuberculosis CDC1551] gi|148661756|ref|YP_001283279.1| hypothetical protein MRA_1958 [Mycobacterium tuberculosis H37Ra] 24 more sequence titles Length=116 Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 116/116 (100%), Positives = 116/116 (100%), Gaps = 0/116 (0%) Query 1 MTVFGIKPDNYFGDVVLAAADRDGLRIFQYAVRSAHESGQATFDIDGVQQRIVRESGTAD 60 MTVFGIKPDNYFGDVVLAAADRDGLRIFQYAVRSAHESGQATFDIDGVQQRIVRESGTAD Sbjct 1 MTVFGIKPDNYFGDVVLAAADRDGLRIFQYAVRSAHESGQATFDIDGVQQRIVRESGTAD 60 Query 61 MELGSQTVVWRFDDTKLVEILDKLSPLIDGEGPGHQYIDDLNSPAPTLMISVDEYA 116 MELGSQTVVWRFDDTKLVEILDKLSPLIDGEGPGHQYIDDLNSPAPTLMISVDEYA Sbjct 61 MELGSQTVVWRFDDTKLVEILDKLSPLIDGEGPGHQYIDDLNSPAPTLMISVDEYA 116 >gi|31793140|ref|NP_855633.1| hypothetical protein Mb1983c [Mycobacterium bovis AF2122/97] gi|121637853|ref|YP_978076.1| hypothetical protein BCG_1987c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990337|ref|YP_002645024.1| hypothetical protein JTY_1971 [Mycobacterium bovis BCG str. Tokyo 172] 26 more sequence titles Length=116 Score = 234 bits (598), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 115/116 (99%), Positives = 115/116 (99%), Gaps = 0/116 (0%) Query 1 MTVFGIKPDNYFGDVVLAAADRDGLRIFQYAVRSAHESGQATFDIDGVQQRIVRESGTAD 60 MTVF IKPDNYFGDVVLAAADRDGLRIFQYAVRSAHESGQATFDIDGVQQRIVRESGTAD Sbjct 1 MTVFRIKPDNYFGDVVLAAADRDGLRIFQYAVRSAHESGQATFDIDGVQQRIVRESGTAD 60 Query 61 MELGSQTVVWRFDDTKLVEILDKLSPLIDGEGPGHQYIDDLNSPAPTLMISVDEYA 116 MELGSQTVVWRFDDTKLVEILDKLSPLIDGEGPGHQYIDDLNSPAPTLMISVDEYA Sbjct 61 MELGSQTVVWRFDDTKLVEILDKLSPLIDGEGPGHQYIDDLNSPAPTLMISVDEYA 116 >gi|289574631|ref|ZP_06454858.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|339632000|ref|YP_004723642.1| hypothetical protein MAF_19710 [Mycobacterium africanum GM041182] gi|289539062|gb|EFD43640.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|339331356|emb|CCC27041.1| hypothetical protein MAF_19710 [Mycobacterium africanum GM041182] Length=116 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 114/116 (99%), Positives = 114/116 (99%), Gaps = 0/116 (0%) Query 1 MTVFGIKPDNYFGDVVLAAADRDGLRIFQYAVRSAHESGQATFDIDGVQQRIVRESGTAD 60 M VF IKPDNYFGDVVLAAADRDGLRIFQYAVRSAHESGQATFDIDGVQQRIVRESGTAD Sbjct 1 MPVFRIKPDNYFGDVVLAAADRDGLRIFQYAVRSAHESGQATFDIDGVQQRIVRESGTAD 60 Query 61 MELGSQTVVWRFDDTKLVEILDKLSPLIDGEGPGHQYIDDLNSPAPTLMISVDEYA 116 MELGSQTVVWRFDDTKLVEILDKLSPLIDGEGPGHQYIDDLNSPAPTLMISVDEYA Sbjct 61 MELGSQTVVWRFDDTKLVEILDKLSPLIDGEGPGHQYIDDLNSPAPTLMISVDEYA 116 >gi|254818369|ref|ZP_05223370.1| hypothetical protein MintA_00500 [Mycobacterium intracellulare ATCC 13950] Length=346 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/115 (40%), Positives = 63/115 (55%), Gaps = 9/115 (7%) Query 8 PDNYFGD-VVLAAADRDGLRIFQYAVRSAHESGQATFDIDGVQQRIVRESGTADMELGSQ 66 P+ YFGD VL D G+ + A+ A + G + + DGV ES AD+ELG Sbjct 223 PEFYFGDDAVLLTLDGGGVDKLKAALSDAKQHGASRLEHDGVTHEFHIESDAADIELGPI 282 Query 67 TVVWRFDDTKLVEILDKLSPLIDGEG------PGHQYIDDLNSPAPTLMISVDEY 115 VVWR D+ K EI+ L+ L D EG GH Y+ D+++P TL++S DEY Sbjct 283 HVVWRLDEAKAAEIIADLAVLSD-EGTVGRPTSGHFYV-DMSTPTKTLVVSRDEY 335 >gi|342859307|ref|ZP_08715961.1| hypothetical protein MCOL_10523 [Mycobacterium colombiense CECT 3035] gi|342133548|gb|EGT86751.1| hypothetical protein MCOL_10523 [Mycobacterium colombiense CECT 3035] Length=135 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/106 (36%), Positives = 55/106 (52%), Gaps = 2/106 (1%) Query 11 YFGD-VVLAAADRDGLRIFQYAVRSAHESGQATFDIDGVQQRIVRESGTADMELGSQTVV 69 Y GD VL A D G+ + A + G A D + V E G A++E TVV Sbjct 13 YMGDDAVLLAMDAAGVDTVLAVLTDATQKGSARLDHGATIHQFVIEPGAAEIEFRDGTVV 72 Query 70 WRFDDTKLVEILDKLSPLIDGEGPGHQYIDDLNSPAPTLMISVDEY 115 WR D EI++ L+ + D G GH Y+ D++ PA L++S++EY Sbjct 73 WRLDAAVAAEIIELLTEMHDHPGSGHHYV-DISEPADLLVLSLNEY 117 >gi|293401739|ref|ZP_06645880.1| glucose-1-phosphate thymidylyltransferase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304691|gb|EFE45939.1| glucose-1-phosphate thymidylyltransferase [Erysipelotrichaceae bacterium 5_2_54FAA] Length=294 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/82 (31%), Positives = 37/82 (46%), Gaps = 2/82 (2%) Query 10 NYFGDVVLAAADRDGLRIFQYAVRSAHESGQATFDIDGVQQRIVRESGTADMELGSQTVV 69 +F +V+ A +++G IF Y VR E G TFD +G + + E + Sbjct 114 RHFSNVLKKAVEQEGATIFGYYVRDPREYGVVTFDKEG--KVLTLEEKPEHPKSNYAVPG 171 Query 70 WRFDDTKLVEILDKLSPLIDGE 91 F D +VEI K+ P GE Sbjct 172 LYFYDNDVVEIAKKVKPSARGE 193 Lambda K H 0.319 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130541267802 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40