BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1949c
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609086|ref|NP_216465.1| hypothetical protein Rv1949c [Mycob... 646 0.0
gi|289762103|ref|ZP_06521481.1| conserved hypothetical protein [... 642 0.0
gi|289570036|ref|ZP_06450263.1| conserved hypothetical protein [... 640 0.0
gi|340626959|ref|YP_004745411.1| hypothetical protein MCAN_19661... 633 1e-179
gi|15841420|ref|NP_336457.1| hypothetical protein MT1999 [Mycoba... 607 7e-172
gi|31793141|ref|NP_855634.1| hypothetical protein Mb1984c [Mycob... 605 3e-171
gi|183980511|ref|YP_001848802.1| hypothetical protein MMAR_0482 ... 220 2e-55
gi|118616854|ref|YP_905186.1| hypothetical protein MUL_1133 [Myc... 214 1e-53
gi|308374447|ref|ZP_07667786.1| hypothetical protein TMFG_03452 ... 207 2e-51
gi|118464810|ref|YP_882824.1| hypothetical protein MAV_3647 [Myc... 147 2e-33
gi|183984032|ref|YP_001852323.1| hypothetical protein MMAR_4061 ... 144 2e-32
gi|240172763|ref|ZP_04751422.1| hypothetical protein MkanA1_2583... 135 6e-30
gi|342858515|ref|ZP_08715170.1| hypothetical protein MCOL_06556 ... 128 9e-28
gi|336460919|gb|EGO39802.1| hypothetical protein MAPs_35850 [Myc... 125 9e-27
gi|41408570|ref|NP_961406.1| hypothetical protein MAP2472 [Mycob... 125 9e-27
gi|183980150|ref|YP_001848441.1| hypothetical protein MMAR_0116 ... 120 2e-25
gi|15609214|ref|NP_216593.1| transmembrane protein [Mycobacteriu... 118 1e-24
gi|342860790|ref|ZP_08717440.1| hypothetical protein MCOL_18003 ... 111 2e-22
gi|118466269|ref|YP_881458.1| hypothetical protein MAV_2254 [Myc... 110 3e-22
gi|118464060|ref|YP_880692.1| hypothetical protein MAV_1450 [Myc... 109 7e-22
gi|254774328|ref|ZP_05215844.1| hypothetical protein MaviaA2_066... 107 2e-21
gi|118464941|ref|YP_880720.1| hypothetical protein MAV_1479 [Myc... 104 2e-20
gi|183980513|ref|YP_001848804.1| hypothetical protein MMAR_0484 ... 103 3e-20
gi|118616857|ref|YP_905189.1| hypothetical protein MUL_1136 [Myc... 100 3e-19
gi|118466271|ref|YP_880360.1| hypothetical protein MAV_1108 [Myc... 99.8 5e-19
gi|118465678|ref|YP_879971.1| hypothetical protein MAV_0692 [Myc... 99.4 7e-19
gi|336457784|gb|EGO36778.1| hypothetical protein MAPs_18830 [Myc... 95.1 1e-17
gi|41407431|ref|NP_960267.1| hypothetical protein MAP1333 [Mycob... 95.1 1e-17
gi|342860951|ref|ZP_08717600.1| hypothetical protein MCOL_18807 ... 94.4 2e-17
gi|183983552|ref|YP_001851843.1| hypothetical protein MMAR_3572 ... 93.6 4e-17
gi|254775594|ref|ZP_05217110.1| hypothetical protein MaviaA2_131... 92.4 9e-17
gi|118464597|ref|YP_882327.1| hypothetical protein MAV_3143 [Myc... 91.7 2e-16
gi|240170349|ref|ZP_04749008.1| hypothetical protein MkanA1_1363... 91.3 2e-16
gi|118469187|ref|YP_889834.1| hypothetical protein MSMEG_5600 [M... 90.9 2e-16
gi|296170642|ref|ZP_06852217.1| conserved hypothetical protein [... 87.8 2e-15
gi|41407315|ref|NP_960151.1| hypothetical protein MAP1217c [Myco... 87.8 2e-15
gi|118464287|ref|YP_882469.1| hypothetical protein MAV_3287 [Myc... 86.7 4e-15
gi|296164510|ref|ZP_06847081.1| conserved hypothetical protein [... 81.3 2e-13
gi|340627558|ref|YP_004746010.1| hypothetical protein MCAN_25831... 62.0 1e-07
gi|254551592|ref|ZP_05142039.1| hypothetical protein Mtube_14227... 59.7 5e-07
gi|31793724|ref|NP_856217.1| hypothetical protein Mb2571 [Mycoba... 59.7 5e-07
gi|15609679|ref|NP_217058.1| hypothetical protein Rv2542 [Mycoba... 59.7 6e-07
gi|307085228|ref|ZP_07494341.1| hypothetical protein TMLG_02269 ... 59.7 6e-07
gi|15607754|ref|NP_215128.1| hypothetical protein Rv0614 [Mycoba... 54.3 2e-05
gi|289568550|ref|ZP_06448777.1| conserved hypothetical protein [... 54.3 2e-05
gi|15840016|ref|NP_335053.1| hypothetical protein MT0644 [Mycoba... 54.3 3e-05
gi|340625637|ref|YP_004744089.1| hypothetical protein MCAN_06161... 54.3 3e-05
gi|289749113|ref|ZP_06508491.1| conserved hypothetical protein [... 53.9 4e-05
gi|326905163|gb|EGE52096.1| hypothetical protein TBPG_03095 [Myc... 53.1 6e-05
gi|148821816|ref|YP_001286570.1| hypothetical protein TBFG_10625... 52.8 8e-05
>gi|15609086|ref|NP_216465.1| hypothetical protein Rv1949c [Mycobacterium tuberculosis H37Rv]
gi|1806213|emb|CAB06512.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|326903555|gb|EGE50488.1| LOW QUALITY PROTEIN: hypothetical protein TBPG_01431 [Mycobacterium
tuberculosis W-148]
Length=319
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/319 (100%), Positives = 319/319 (100%), Gaps = 0/319 (0%)
Query 1 WLRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLS 60
WLRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLS
Sbjct 1 WLRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLS 60
Query 61 VTDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEP 120
VTDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEP
Sbjct 61 VTDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEP 120
Query 121 PIAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYN 180
PIAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYN
Sbjct 121 PIAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYN 180
Query 181 ARCGRTFVLPNEQAAYDACIADKGSLFERQAAIRARLGELGVPVEGEPPPAPDPAGPQPN 240
ARCGRTFVLPNEQAAYDACIADKGSLFERQAAIRARLGELGVPVEGEPPPAPDPAGPQPN
Sbjct 181 ARCGRTFVLPNEQAAYDACIADKGSLFERQAAIRARLGELGVPVEGEPPPAPDPAGPQPN 240
Query 241 EGLPPPGVSPPAESNLTVGPPSRPIQQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPH 300
EGLPPPGVSPPAESNLTVGPPSRPIQQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPH
Sbjct 241 EGLPPPGVSPPAESNLTVGPPSRPIQQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPH 300
Query 301 DSPTARWQNIPIGDLPTHK 319
DSPTARWQNIPIGDLPTHK
Sbjct 301 DSPTARWQNIPIGDLPTHK 319
>gi|289762103|ref|ZP_06521481.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289709609|gb|EFD73625.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
Length=318
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/318 (99%), Positives = 318/318 (100%), Gaps = 0/318 (0%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
+RQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV
Sbjct 1 MRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 60
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP
Sbjct 61 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 120
Query 122 IAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYNA 181
IAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYNA
Sbjct 121 IAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYNA 180
Query 182 RCGRTFVLPNEQAAYDACIADKGSLFERQAAIRARLGELGVPVEGEPPPAPDPAGPQPNE 241
RCGRTFVLPNEQAAYDACIADKGSLFERQAAIRARLGELGVPVEGEPPPAPDPAGPQPNE
Sbjct 181 RCGRTFVLPNEQAAYDACIADKGSLFERQAAIRARLGELGVPVEGEPPPAPDPAGPQPNE 240
Query 242 GLPPPGVSPPAESNLTVGPPSRPIQQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPHD 301
GLPPPGVSPPAESNLTVGPPSRPIQQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPHD
Sbjct 241 GLPPPGVSPPAESNLTVGPPSRPIQQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPHD 300
Query 302 SPTARWQNIPIGDLPTHK 319
SPTARWQNIPIGDLPTHK
Sbjct 301 SPTARWQNIPIGDLPTHK 318
>gi|289570036|ref|ZP_06450263.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289543790|gb|EFD47438.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=318
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/318 (99%), Positives = 317/318 (99%), Gaps = 0/318 (0%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
+RQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV
Sbjct 1 MRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 60
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP
Sbjct 61 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 120
Query 122 IAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYNA 181
IAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYNA
Sbjct 121 IAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYNA 180
Query 182 RCGRTFVLPNEQAAYDACIADKGSLFERQAAIRARLGELGVPVEGEPPPAPDPAGPQPNE 241
RCGRTFVLPNEQAAYDACIADKGSL ERQAAIRARLGELGVPVEGEPPPAPDPAGPQPNE
Sbjct 181 RCGRTFVLPNEQAAYDACIADKGSLLERQAAIRARLGELGVPVEGEPPPAPDPAGPQPNE 240
Query 242 GLPPPGVSPPAESNLTVGPPSRPIQQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPHD 301
GLPPPGVSPPAESNLTVGPPSRPIQQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPHD
Sbjct 241 GLPPPGVSPPAESNLTVGPPSRPIQQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPHD 300
Query 302 SPTARWQNIPIGDLPTHK 319
SPTARWQNIPIGDLPTHK
Sbjct 301 SPTARWQNIPIGDLPTHK 318
>gi|340626959|ref|YP_004745411.1| hypothetical protein MCAN_19661 [Mycobacterium canettii CIPT
140010059]
gi|340005149|emb|CCC44298.1| putative uncharacterized protein flags: fragment [Mycobacterium
canettii CIPT 140010059]
Length=371
Score = 633 bits (1632), Expect = 1e-179, Method: Compositional matrix adjust.
Identities = 314/318 (99%), Positives = 314/318 (99%), Gaps = 0/318 (0%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV
Sbjct 54 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 113
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
TDTRTSRT AEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP
Sbjct 114 TDTRTSRTAAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 173
Query 122 IAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYNA 181
IAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDMTA QARAAWDAVNADIARYNA
Sbjct 174 IAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDMTAAQARAAWDAVNADIARYNA 233
Query 182 RCGRTFVLPNEQAAYDACIADKGSLFERQAAIRARLGELGVPVEGEPPPAPDPAGPQPNE 241
RCGRTFVLPNEQAAYDACIADKGSL ERQAAIRARLGELGVPVEGEPPPAPDPAGPQPNE
Sbjct 234 RCGRTFVLPNEQAAYDACIADKGSLLERQAAIRARLGELGVPVEGEPPPAPDPAGPQPNE 293
Query 242 GLPPPGVSPPAESNLTVGPPSRPIQQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPHD 301
GLPPPGVSPPAESNLTVGPPSRP QQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPHD
Sbjct 294 GLPPPGVSPPAESNLTVGPPSRPSQQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPHD 353
Query 302 SPTARWQNIPIGDLPTHK 319
SPTARWQNIPIGDLPTHK
Sbjct 354 SPTARWQNIPIGDLPTHK 371
>gi|15841420|ref|NP_336457.1| hypothetical protein MT1999 [Mycobacterium tuberculosis CDC1551]
gi|148661757|ref|YP_001283280.1| hypothetical protein MRA_1959 [Mycobacterium tuberculosis H37Ra]
gi|148823161|ref|YP_001287915.1| hypothetical protein TBFG_11978 [Mycobacterium tuberculosis F11]
48 more sequence titles
Length=300
Score = 607 bits (1565), Expect = 7e-172, Method: Compositional matrix adjust.
Identities = 299/300 (99%), Positives = 300/300 (100%), Gaps = 0/300 (0%)
Query 20 LRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSVTDTRTSRTFAEQAARQAQ 79
+RQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSVTDTRTSRTFAEQAARQAQ
Sbjct 1 MRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSVTDTRTSRTFAEQAARQAQ 60
Query 80 AQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPPIAPSLPTPVPHNEKPQIH 139
AQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPPIAPSLPTPVPHNEKPQIH
Sbjct 61 AQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPPIAPSLPTPVPHNEKPQIH 120
Query 140 AVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYNARCGRTFVLPNEQAAYDAC 199
AVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYNARCGRTFVLPNEQAAYDAC
Sbjct 121 AVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYNARCGRTFVLPNEQAAYDAC 180
Query 200 IADKGSLFERQAAIRARLGELGVPVEGEPPPAPDPAGPQPNEGLPPPGVSPPAESNLTVG 259
IADKGSLFERQAAIRARLGELGVPVEGEPPPAPDPAGPQPNEGLPPPGVSPPAESNLTVG
Sbjct 181 IADKGSLFERQAAIRARLGELGVPVEGEPPPAPDPAGPQPNEGLPPPGVSPPAESNLTVG 240
Query 260 PPSRPIQQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPHDSPTARWQNIPIGDLPTHK 319
PPSRPIQQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPHDSPTARWQNIPIGDLPTHK
Sbjct 241 PPSRPIQQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPHDSPTARWQNIPIGDLPTHK 300
>gi|31793141|ref|NP_855634.1| hypothetical protein Mb1984c [Mycobacterium bovis AF2122/97]
gi|121637854|ref|YP_978077.1| hypothetical protein BCG_1988c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224990338|ref|YP_002645025.1| hypothetical protein JTY_1972 [Mycobacterium bovis BCG str. Tokyo
172]
16 more sequence titles
Length=300
Score = 605 bits (1560), Expect = 3e-171, Method: Compositional matrix adjust.
Identities = 298/300 (99%), Positives = 299/300 (99%), Gaps = 0/300 (0%)
Query 20 LRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSVTDTRTSRTFAEQAARQAQ 79
+RQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSVTDTRTSRTFAEQAARQAQ
Sbjct 1 MRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSVTDTRTSRTFAEQAARQAQ 60
Query 80 AQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPPIAPSLPTPVPHNEKPQIH 139
AQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPPIAPSLPTPVPHNEKPQIH
Sbjct 61 AQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPPIAPSLPTPVPHNEKPQIH 120
Query 140 AVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYNARCGRTFVLPNEQAAYDAC 199
AVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYNARCGRTFVLPNEQAAYDAC
Sbjct 121 AVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYNARCGRTFVLPNEQAAYDAC 180
Query 200 IADKGSLFERQAAIRARLGELGVPVEGEPPPAPDPAGPQPNEGLPPPGVSPPAESNLTVG 259
IADKGSL ERQAAIRARLGELGVPVEGEPPPAPDPAGPQPNEGLPPPGVSPPAESNLTVG
Sbjct 181 IADKGSLLERQAAIRARLGELGVPVEGEPPPAPDPAGPQPNEGLPPPGVSPPAESNLTVG 240
Query 260 PPSRPIQQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPHDSPTARWQNIPIGDLPTHK 319
PPSRPIQQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPHDSPTARWQNIPIGDLPTHK
Sbjct 241 PPSRPIQQARGGESLWDENGGEWRYFPGDNYRYPHWDYNPHDSPTARWQNIPIGDLPTHK 300
>gi|183980511|ref|YP_001848802.1| hypothetical protein MMAR_0482 [Mycobacterium marinum M]
gi|183173837|gb|ACC38947.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=371
Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 150/304 (50%), Positives = 187/304 (62%), Gaps = 32/304 (10%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LR T ADLQ S + L++A+ +AR GA + AA+ RV YAV DA AGF VEEDLSV
Sbjct 58 LRAATHADLQTTSAAVDQLQEAARVARNGASDLYAARSRVRYAVTDAQAAGFQVEEDLSV 117
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
TD T + A++AARQAQAQA AGD+RQRA QL+G++ +VA K+ TA + +G P
Sbjct 118 TDRMTGGSAAQRAARQAQAQAFAGDLRQRAAQLVGLDAQVATKV---TAAVAGIGSSFPQ 174
Query 122 IAPSLPTPVPHNEKPQIHAVD-RSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYN 180
I P+ + + AVD R++KQ+PP P P DPKDMTA +ARAAW +N++I +YN
Sbjct 175 IPAPAAPPMGN----PVRAVDNRTFKQNPP-PAPVDPKDMTAEEARAAWADINSEIGKYN 229
Query 181 ARCGRTFVLPNEQAAYDACIADKGSLFERQAAIRARLGELGVPVEGEPPPAPDPA----- 235
ARCGRTFVLP EQ AYDACIADKG L +RQAAIRARLG+LG+PVEGE P P A
Sbjct 230 ARCGRTFVLPTEQGAYDACIADKGPLLDRQAAIRARLGQLGIPVEGEDPTHPGTAEPPFP 289
Query 236 -----------GPQPNEGLPPPGVSPPAESNLTVGPPSRPIQQARGGESLWDENGGEWRY 284
G Q EG GV+ A + P P + + D+ GG WRY
Sbjct 290 PPTRINGLTEHGAQRVEGRDGHGVNDNAMQDAVAHPIEPP-------QFMPDQYGGTWRY 342
Query 285 FPGD 288
D
Sbjct 343 IGKD 346
>gi|118616854|ref|YP_905186.1| hypothetical protein MUL_1133 [Mycobacterium ulcerans Agy99]
gi|118568964|gb|ABL03715.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=314
Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 147/304 (49%), Positives = 185/304 (61%), Gaps = 32/304 (10%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
+R T ADLQ S + L++A+ +AR GA + AA+ RV YAV DA AGF VEEDLSV
Sbjct 1 MRAATHADLQTTSAAVDQLQEAARVARNGASDLYAARSRVRYAVTDAQAAGFQVEEDLSV 60
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
TD T + A++AARQAQAQA AGD+ QRA QL+G++ +VA K+ TA + +G P
Sbjct 61 TDRMTGGSAAQRAARQAQAQAFAGDLPQRAAQLVGLDAQVATKV---TAAVAGIGSSFPQ 117
Query 122 IAPSLPTPVPHNEKPQIHAVD-RSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYN 180
I P+ + + AVD R++KQ+PP P P DPKDMTA +ARAAW +N++I +YN
Sbjct 118 IPAPAAPPMGN----PVRAVDNRTFKQNPP-PAPVDPKDMTAEEARAAWADINSEIGKYN 172
Query 181 ARCGRTFVLPNEQAAYDACIADKGSLFERQAAIRARLGELGVPVEGEPPPAPDPA----- 235
ARCGRTFVLP EQ AYDACIADKG L +RQA IRARLG+LG+PVEGE P P A
Sbjct 173 ARCGRTFVLPTEQGAYDACIADKGPLLDRQAVIRARLGQLGIPVEGEDPTHPGTAEPPFP 232
Query 236 -----------GPQPNEGLPPPGVSPPAESNLTVGPPSRPIQQARGGESLWDENGGEWRY 284
G Q EG GV+ A + P P + + D+ GG WRY
Sbjct 233 PPTRINGLTEHGAQRVEGRDGHGVNDNAMQDAVAHPIEPP-------QFMPDQYGGTWRY 285
Query 285 FPGD 288
D
Sbjct 286 IGKD 289
>gi|308374447|ref|ZP_07667786.1| hypothetical protein TMFG_03452 [Mycobacterium tuberculosis SUMu006]
gi|308341899|gb|EFP30750.1| hypothetical protein TMFG_03452 [Mycobacterium tuberculosis SUMu006]
Length=100
Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/100 (99%), Positives = 100/100 (100%), Gaps = 0/100 (0%)
Query 220 LGVPVEGEPPPAPDPAGPQPNEGLPPPGVSPPAESNLTVGPPSRPIQQARGGESLWDENG 279
+GVPVEGEPPPAPDPAGPQPNEGLPPPGVSPPAESNLTVGPPSRPIQQARGGESLWDENG
Sbjct 1 MGVPVEGEPPPAPDPAGPQPNEGLPPPGVSPPAESNLTVGPPSRPIQQARGGESLWDENG 60
Query 280 GEWRYFPGDNYRYPHWDYNPHDSPTARWQNIPIGDLPTHK 319
GEWRYFPGDNYRYPHWDYNPHDSPTARWQNIPIGDLPTHK
Sbjct 61 GEWRYFPGDNYRYPHWDYNPHDSPTARWQNIPIGDLPTHK 100
>gi|118464810|ref|YP_882824.1| hypothetical protein MAV_3647 [Mycobacterium avium 104]
gi|118166097|gb|ABK66994.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=235
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/115 (68%), Positives = 93/115 (81%), Gaps = 0/115 (0%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LRQRTGADL +VSG A+ LR+A+G+AR GA IGAAQRRV+YAV+DA NAGF V EDLSV
Sbjct 54 LRQRTGADLSVVSGKADQLRKAAGIARNGASDIGAAQRRVLYAVEDAQNAGFTVGEDLSV 113
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVG 116
TDTR+S T A+ AARQA+A+A AGDIR RA QL GV+ +VA ++ T TA L TVG
Sbjct 114 TDTRSSTTPADHAARQARAEAFAGDIRARAEQLEGVDRKVARELTTTTADLGTVG 168
>gi|183984032|ref|YP_001852323.1| hypothetical protein MMAR_4061 [Mycobacterium marinum M]
gi|183177358|gb|ACC42468.1| conserved hypothetical transmembrane protein [Mycobacterium marinum
M]
Length=336
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/158 (54%), Positives = 104/158 (66%), Gaps = 4/158 (2%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LR+RT ADL +VS A+ LRQA+G+AR+GA I AAQRRV+YA++DA N GF V EDLSV
Sbjct 54 LRERTSADLPLVSAKADVLRQAAGIARDGASGISAAQRRVLYAIEDAQNVGFTVGEDLSV 113
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
TDTR+S T AEQ AR AQAQA AGDIR RA QL E +VA +++ A L+ +GF E P
Sbjct 114 TDTRSSGTAAEQVARHAQAQAFAGDIRLRAEQLDAAEVKVAGQLSAIRAGLSGIGFAENP 173
Query 122 IAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKD 159
I PV H +I +KQD +P P P D
Sbjct 174 IF----NPVAHAPANRIGIQPVDFKQDSGAPPPFAPWD 207
>gi|240172763|ref|ZP_04751422.1| hypothetical protein MkanA1_25837 [Mycobacterium kansasii ATCC
12478]
Length=354
Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 93/144 (65%), Positives = 103/144 (72%), Gaps = 11/144 (7%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LR RTG DL IV+ A+ LRQA+ +AREGAGTIGAAQRRVIYAVQDA++AGFNV EDLSV
Sbjct 54 LRARTGGDLVIVTAKADQLRQAAVIAREGAGTIGAAQRRVIYAVQDANDAGFNVGEDLSV 113
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
DTRTSRT AEQA+RQAQAQA A DIRQRATQLIG EHE AK TA F E
Sbjct 114 ADTRTSRTAAEQASRQAQAQAFAADIRQRATQLIGAEHEAGAK-ITAATAGIATTFPE-- 170
Query 122 IAPSLPTPVPHNEKPQIHAVDRSW 145
PH+ KP + AVD +W
Sbjct 171 --------TPHDHKPHVQAVDHTW 186
>gi|342858515|ref|ZP_08715170.1| hypothetical protein MCOL_06556 [Mycobacterium colombiense CECT
3035]
gi|342134219|gb|EGT87399.1| hypothetical protein MCOL_06556 [Mycobacterium colombiense CECT
3035]
Length=358
Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 75/135 (56%), Positives = 94/135 (70%), Gaps = 2/135 (1%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LRQRTGAD+ +VS A+ LRQA+G+AR GA I AAQRRV+Y V+DA NAGF V EDLSV
Sbjct 54 LRQRTGADVSVVSDKADLLRQAAGIARNGASDISAAQRRVLYGVEDAQNAGFAVGEDLSV 113
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
TDTR S + AE+AARQ QA+A A D+R RA QL G + +V+ ++ ATA L+ GF P
Sbjct 114 TDTR-STSPAERAARQTQAEAFAADLRLRAEQLEGADVKVSGQLTAATAGLSGGGF-APG 171
Query 122 IAPSLPTPVPHNEKP 136
S +P H+ P
Sbjct 172 SGSSHGSPADHHTTP 186
>gi|336460919|gb|EGO39802.1| hypothetical protein MAPs_35850 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=362
Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/116 (61%), Positives = 86/116 (75%), Gaps = 1/116 (0%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LR+RT ADL +VS A+ LRQA+G+AR GA I AAQRRV++ V+DA NAGF V EDLSV
Sbjct 54 LRERTQADLSVVSAKADLLRQAAGIARNGASDISAAQRRVLFGVEDAQNAGFTVGEDLSV 113
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGF 117
TDTR S + AE+ ARQA+A+A A DIR RA QL G + +VAA++ ATA L GF
Sbjct 114 TDTR-STSPAERPARQAEAEAFAADIRLRAEQLDGADTKVAAQLTAATAGLGGSGF 168
>gi|41408570|ref|NP_961406.1| hypothetical protein MAP2472 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396928|gb|AAS04789.1| hypothetical protein MAP_2472 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=362
Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/116 (61%), Positives = 86/116 (75%), Gaps = 1/116 (0%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LR+RT ADL +VS A+ LRQA+G+AR GA I AAQRRV++ V+DA NAGF V EDLSV
Sbjct 54 LRERTQADLSVVSAKADLLRQAAGIARNGASDISAAQRRVLFGVEDAQNAGFTVGEDLSV 113
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGF 117
TDTR S + AE+ ARQA+A+A A DIR RA QL G + +VAA++ ATA L GF
Sbjct 114 TDTR-STSPAERPARQAEAEAFAADIRLRAEQLDGADTKVAAQLTAATAGLGGSGF 168
>gi|183980150|ref|YP_001848441.1| hypothetical protein MMAR_0116 [Mycobacterium marinum M]
gi|183173476|gb|ACC38586.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=339
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/158 (57%), Positives = 107/158 (68%), Gaps = 5/158 (3%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LR+RT ADL IV A+ LRQA+G+A GA I AAQRRV+YAV+DAHNAGF V EDLSV
Sbjct 54 LRERTSADLPIVGAKADMLRQAAGIAGNGASDISAAQRRVLYAVEDAHNAGFTVGEDLSV 113
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
TDT S T AEQAARQAQAQA AGDIR A QL G + +VA ++ ATA L++VGF + P
Sbjct 114 TDTHRSGTPAEQAARQAQAQAFAGDIRLHARQLDGADAKVAGQLTAATADLSSVGFAQNP 173
Query 122 IAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKD 159
I P+ P H Q+ VD +KQ+ P P P D
Sbjct 174 I-PATQAPTTHRNGVQL--VD--FKQNGGEPPPFAPWD 206
>gi|15609214|ref|NP_216593.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|15841566|ref|NP_336603.1| hypothetical protein MT2137 [Mycobacterium tuberculosis CDC1551]
gi|31793259|ref|NP_855752.1| transmembrane protein [Mycobacterium bovis AF2122/97]
80 more sequence titles
Length=323
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/121 (62%), Positives = 91/121 (76%), Gaps = 0/121 (0%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LRQRT AD VSGIA+ LR+A+ +AR GAGTI AAQRRV+YAV+DA +AGFNV EDLSV
Sbjct 54 LRQRTRADFSTVSGIADQLRRAATIARNGAGTIDAAQRRVMYAVEDAQDAGFNVGEDLSV 113
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
TDT+T++ A QAAR AQAQALAGDIR R QL+ E+EV+ ++A T + V F P
Sbjct 114 TDTKTTQPAAVQAARLAQAQALAGDIRLRVGQLVAAENEVSGQLAATTGDVGNVRFAGAP 173
Query 122 I 122
+
Sbjct 174 V 174
>gi|342860790|ref|ZP_08717440.1| hypothetical protein MCOL_18003 [Mycobacterium colombiense CECT
3035]
gi|342131814|gb|EGT85071.1| hypothetical protein MCOL_18003 [Mycobacterium colombiense CECT
3035]
Length=356
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 92/150 (62%), Gaps = 8/150 (5%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
L T DLQ S +A+ L+ A+ +AR GA + AA+ RV Y V+DA AGF+V ED+SV
Sbjct 59 LHAATHGDLQKTSAVADQLQAAAKVARSGAADLSAARSRVRYVVEDAFGAGFDVREDMSV 118
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
TD T + A++A R+AQAQ AGDIRQRATQL+ ++ +VA ++ +A A +
Sbjct 119 TDPSTGGSTAQRATRRAQAQGYAGDIRQRATQLVALDQQVAERVTSAMAGIRDT------ 172
Query 122 IAPSLPTPVPHNEKPQIHAVD-RSWKQDPP 150
PS P E+ + AVD S+K+DPP
Sbjct 173 -FPSATGPDGPGERSRFRAVDNHSFKEDPP 201
>gi|118466269|ref|YP_881458.1| hypothetical protein MAV_2254 [Mycobacterium avium 104]
gi|118167556|gb|ABK68453.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=354
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/118 (63%), Positives = 90/118 (77%), Gaps = 1/118 (0%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LRQRTGADL +VSG A+ LRQA+G+AR GA I AAQRRV+Y V+DA NAGF V EDLSV
Sbjct 54 LRQRTGADLSVVSGKADLLRQAAGIARNGASDISAAQRRVLYGVEDALNAGFTVGEDLSV 113
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHE 119
TDTR S + AE+AARQAQA+A A DIR RA QL G + +V+ ++ ATA L+ GF +
Sbjct 114 TDTR-STSPAERAARQAQAEAFAADIRLRAEQLDGADTKVSGQLTAATAGLSGGGFAQ 170
>gi|118464060|ref|YP_880692.1| hypothetical protein MAV_1450 [Mycobacterium avium 104]
gi|118165347|gb|ABK66244.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=353
Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/170 (45%), Positives = 97/170 (58%), Gaps = 20/170 (11%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LR+RT ADL +VS A+ LRQA+G+AR GA I AAQRRV+Y ++DA NAGF V EDLSV
Sbjct 54 LRERTQADLSVVSAKADLLRQAAGIARNGASDISAAQRRVVYGIEDAQNAGFTVGEDLSV 113
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGF---- 117
TD R++ A + A DIR RA QL G + +VA ++ ATA L GF
Sbjct 114 TDMRSTSPAERAARQAQAEAFAA-DIRLRAEQLDGADTKVAGQLTAATAGLGGDGFAPAS 172
Query 118 ---HEPPIAPS-------LPTPVPHNEKPQIHAVDRSWKQD---PPSPMP 154
P A + VP++++ +H VD +KQD PSPMP
Sbjct 173 SHNSRQPSAQKDGGQNRRSTSGVPNSQRGGVHLVD--FKQDGGADPSPMP 220
>gi|254774328|ref|ZP_05215844.1| hypothetical protein MaviaA2_06625 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=362
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/116 (54%), Positives = 77/116 (67%), Gaps = 1/116 (0%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LR+RT ADL +VS A+ LRQA+G+AR GA I AAQRRV+Y ++DA NAGF V EDLSV
Sbjct 54 LRERTQADLSVVSAKADLLRQAAGIARNGASDISAAQRRVVYGIEDAQNAGFTVGEDLSV 113
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGF 117
TDTR++ A + A DIR RA QL G + +VAA++ ATA L GF
Sbjct 114 TDTRSTSPAERAARQAQAEAFAA-DIRLRAEQLDGADTKVAAQLTAATAGLGGSGF 168
>gi|118464941|ref|YP_880720.1| hypothetical protein MAV_1479 [Mycobacterium avium 104]
gi|118166228|gb|ABK67125.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=362
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/116 (52%), Positives = 75/116 (65%), Gaps = 1/116 (0%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LR+RT ADL +VS A+ LRQA+G+AR GA I AAQRRV+Y ++DA NAGF V EDLSV
Sbjct 54 LRERTQADLSVVSAKADLLRQAAGIARNGASDISAAQRRVVYGIEDAQNAGFTVGEDLSV 113
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGF 117
TD R++ A + A DIR RA QL G + +VA ++ ATA L GF
Sbjct 114 TDMRSTSPAERAARQAQAEAFAA-DIRLRAEQLDGADTKVAGQLTAATAGLGGSGF 168
>gi|183980513|ref|YP_001848804.1| hypothetical protein MMAR_0484 [Mycobacterium marinum M]
gi|183173839|gb|ACC38949.1| conserved hypothetical transmembrane protein [Mycobacterium marinum
M]
Length=204
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/94 (70%), Positives = 73/94 (78%), Gaps = 2/94 (2%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LRQRTGADL IVS A+ LRQAS +AR+GAGTIG AQRRV++AV+DAHNAGF V ED SV
Sbjct 54 LRQRTGADLAIVSTKADELRQASKIARDGAGTIGIAQRRVLHAVEDAHNAGFTVGEDFSV 113
Query 62 TDTRTSRT--FAEQAARQAQAQALAGDIRQRATQ 93
TD RTSR+ QAQAQALA DIRQRA +
Sbjct 114 TDIRTSRSSAEQAARQAQAQAQALATDIRQRAVE 147
>gi|118616857|ref|YP_905189.1| hypothetical protein MUL_1136 [Mycobacterium ulcerans Agy99]
gi|118568967|gb|ABL03718.1| conserved hypothetical transmembrane protein [Mycobacterium ulcerans
Agy99]
Length=248
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/67 (77%), Positives = 57/67 (86%), Gaps = 0/67 (0%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LRQRTGADL IVS A+ LRQAS +AR+GAGTIG AQRRV++AV+DAHNAGF V ED SV
Sbjct 54 LRQRTGADLAIVSTKADELRQASKIARDGAGTIGIAQRRVLHAVEDAHNAGFTVGEDFSV 113
Query 62 TDTRTSR 68
TD RTSR
Sbjct 114 TDIRTSR 120
>gi|118466271|ref|YP_880360.1| hypothetical protein MAV_1108 [Mycobacterium avium 104]
gi|118167558|gb|ABK68455.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=348
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/179 (44%), Positives = 104/179 (59%), Gaps = 13/179 (7%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LR T AD+ S +A+ LR A+ +AR GA + AA+ RV YAV+DAH+AGF+V EDLS+
Sbjct 46 LRGATHADMTSTSAVADQLRAAASVARGGASDLSAARSRVRYAVEDAHSAGFDVGEDLSI 105
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
D + A++AARQAQA+ALAGDIRQRA QL+ ++ EVA KI A A + H+P
Sbjct 106 RDRTVGGSTAQRAARQAQARALAGDIRQRAAQLVSLDQEVAGKITAAVAGVRDTFPHDP- 164
Query 122 IAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYN 180
+ P+ H + VD +D PS M+ QA+A VN I +N
Sbjct 165 -TANRPSTDGH-----VRGVDNHTFKDAPS------SGMSREQAKAGLKDVNKRIWEHN 211
>gi|118465678|ref|YP_879971.1| hypothetical protein MAV_0692 [Mycobacterium avium 104]
gi|118166965|gb|ABK67862.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=256
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/109 (65%), Positives = 84/109 (78%), Gaps = 2/109 (1%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LRQRTGAD+ +VSG A+ LRQA+G+AR GA I AAQRRV+Y V+DA NAGF V EDLSV
Sbjct 54 LRQRTGADVSVVSGKADQLRQAAGIARNGASEISAAQRRVLYGVEDAQNAGFTVGEDLSV 113
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATA 110
TDTR S + AE+AARQAQA+A A D+R RA QL + + A +I TATA
Sbjct 114 TDTR-STSPAERAARQAQAEAFAADLRLRAEQLEAADTKAAGQI-TATA 160
>gi|336457784|gb|EGO36778.1| hypothetical protein MAPs_18830 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=356
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/150 (45%), Positives = 94/150 (63%), Gaps = 8/150 (5%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
L T D+ SG+A+ LR A+G+AR GA + AA+ RV YAV+DA +GF+V ED+SV
Sbjct 59 LHAATHDDVGKTSGVADQLRAAAGVARSGACELVAARSRVRYAVEDAMRSGFDVYEDMSV 118
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
D T + A++AARQAQAQA AGDIR+RA +L+ ++ +VA ++ ATA +
Sbjct 119 ADRSTGGSAAQRAARQAQAQAFAGDIRRRAAELVALDQQVAGRVTAATAGIRDT------ 172
Query 122 IAPSLPTPVPHNEKPQIHAVD-RSWKQDPP 150
P P KP+ HAVD ++K+DPP
Sbjct 173 -FPQTPDSDAPQRKPKFHAVDHHTFKEDPP 201
>gi|41407431|ref|NP_960267.1| hypothetical protein MAP1333 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395783|gb|AAS03650.1| hypothetical protein MAP_1333 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=261
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/150 (45%), Positives = 94/150 (63%), Gaps = 8/150 (5%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
L T D+ SG+A+ LR A+G+AR GA + AA+ RV YAV+DA +GF+V ED+SV
Sbjct 59 LHAATHDDVGKTSGVADQLRAAAGVARSGACELVAARSRVRYAVEDAMRSGFDVYEDMSV 118
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
D T + A++AARQAQAQA AGDIR+RA +L+ ++ +VA ++ ATA +
Sbjct 119 ADRSTGGSAAQRAARQAQAQAFAGDIRRRAAELVALDQQVAGRVTAATAGIRDT------ 172
Query 122 IAPSLPTPVPHNEKPQIHAVD-RSWKQDPP 150
P P KP+ HAVD ++K+DPP
Sbjct 173 -FPQTPDSDAPQRKPKFHAVDHHTFKEDPP 201
>gi|342860951|ref|ZP_08717600.1| hypothetical protein MCOL_18807 [Mycobacterium colombiense CECT
3035]
gi|342131395|gb|EGT84665.1| hypothetical protein MCOL_18807 [Mycobacterium colombiense CECT
3035]
Length=403
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/116 (57%), Positives = 78/116 (68%), Gaps = 0/116 (0%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LRQRT ADL VS A+ LRQA+G+AR GA I AAQR V+ AV DA NAGF+V EDLSV
Sbjct 55 LRQRTAADLSTVSSKADQLRQAAGIARSGASDISAAQRSVLNAVADAENAGFDVGEDLSV 114
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGF 117
+ T T ++QAARQAQA+ +A I RA QL G E +VA ++ TAT L F
Sbjct 115 SYTDHGGTASQQAARQAQAEQMASQIWSRAKQLDGTEVKVADQLTTATTGLGNATF 170
>gi|183983552|ref|YP_001851843.1| hypothetical protein MMAR_3572 [Mycobacterium marinum M]
gi|183176878|gb|ACC41988.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=301
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/114 (54%), Positives = 78/114 (69%), Gaps = 0/114 (0%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
L RT AD VSG+ + L +A+ +AR GA + AA+ RV YAV+DAH+AGF V EDLSV
Sbjct 60 LHTRTHADHTKVSGLVDQLHEAARIARVGASDLYAARSRVRYAVEDAHDAGFVVGEDLSV 119
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTV 115
TD T + E+A RQAQAQALA DIRQRA LI ++ ++A K+ TA A + V
Sbjct 120 TDYSTGGSLVERATRQAQAQALAADIRQRAGLLISLDGQLAGKVTTAMAGIGNV 173
>gi|254775594|ref|ZP_05217110.1| hypothetical protein MaviaA2_13128 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=298
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 76/186 (41%), Positives = 105/186 (57%), Gaps = 14/186 (7%)
Query 6 TGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSVTDTR 65
T D SG+A+ LR A+G+AR GA + AA+ RV YAV+DA +GF+V ED+SV D
Sbjct 5 THDDAGKTSGVADQLRAAAGVARSGASELVAARSRVRYAVEDAMRSGFDVYEDMSVADRS 64
Query 66 TSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPPIAPS 125
T + A++AARQAQAQA AGDIR+RA +L+ ++ +VA ++ ATA + P
Sbjct 65 TGGSAAQRAARQAQAQAFAGDIRRRAAELVALDQQVAGRVTAATAGIRDT-------FPQ 117
Query 126 LPTPVPHNEKPQIHAVD-RSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIAR---YNA 181
P KP+ AVD ++K+DPP P + V A A N + R YNA
Sbjct 118 TPDSDAPQRKPKFQAVDHHTFKEDPP---PNGSYPVNEVVAEATDLDGNHVVLRRGYYNA 174
Query 182 RCGRTF 187
+ R F
Sbjct 175 KTDRGF 180
>gi|118464597|ref|YP_882327.1| hypothetical protein MAV_3143 [Mycobacterium avium 104]
gi|118165884|gb|ABK66781.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=353
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 92/150 (62%), Gaps = 8/150 (5%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
L T D SG+A+ LR A+G+AR GA + AA+ RV YAV+DA +GF+V ED+SV
Sbjct 56 LHAATHDDAGKTSGVADQLRAAAGVARSGASELVAARSRVRYAVEDAMRSGFDVYEDMSV 115
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
D T + A++AARQAQAQA AGDIR+RA +L+ ++ +VA ++ ATA +
Sbjct 116 ADRSTGGSAAQRAARQAQAQAFAGDIRRRAAELVALDQQVAGRVTAATAGIRDT------ 169
Query 122 IAPSLPTPVPHNEKPQIHAVD-RSWKQDPP 150
P P KP+ AVD ++K+DPP
Sbjct 170 -FPQTPDSDAPQRKPKFQAVDHHTFKEDPP 198
>gi|240170349|ref|ZP_04749008.1| hypothetical protein MkanA1_13635 [Mycobacterium kansasii ATCC
12478]
Length=346
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 87/165 (53%), Gaps = 7/165 (4%)
Query 2 LRQRTGADLQIVSGIAEHL-RQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLS 60
LR TGAD I + + + + +QA AR GA I A+ R+ Y VQDA AGF+V ED+S
Sbjct 57 LRAATGADKTIAANVYDQVTQQACKEARSGASQILDARNRLKYKVQDAEEAGFSVSEDMS 116
Query 61 VTDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEP 120
V DT T+ E A RQAQAQA A DIR RA +L+ + +VA K+ A + F EP
Sbjct 117 VYDTHTTANPVELADRQAQAQAFAEDIRLRAAKLVTADTDVAQKVTATMAGIGPQAFGEP 176
Query 121 PIAPSLPTPVPHNEKPQIHAVDRSWKQ----DPPSPMPGDPKDMT 161
A T + N+ + VD + +PP P D D T
Sbjct 177 INADD--TIIGDNKHNGVQLVDFTQDNAAGTNPPPFAPWDTPDGT 219
>gi|118469187|ref|YP_889834.1| hypothetical protein MSMEG_5600 [Mycobacterium smegmatis str.
MC2 155]
gi|118170474|gb|ABK71370.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=383
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/234 (32%), Positives = 107/234 (46%), Gaps = 21/234 (8%)
Query 4 QRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSVTD 63
+R +L V + R A+ LA + I AA+R + ++ DA GF V EDLSV D
Sbjct 70 ERATQNLNTVRAAGDIARSAADLAENSSADISAAKRDALQSISDAEADGFEVNEDLSVRD 129
Query 64 TRTSRT-FAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPPI 122
T SR + AAR A+ A +I+ A QL+ + + ++ A LN V F + P
Sbjct 130 T--SRVDVSTMAARYTAAREHAENIQWNANQLLATDTLIGRRLTAKAAELNGVRFDDEP- 186
Query 123 APSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYNAR 182
+ + +KQ P + +T QA AAW+ + DIA YN+R
Sbjct 187 ----------EGTIRAASFGDGFKQSPFDDL------LTKEQALAAWEKLQTDIASYNSR 230
Query 183 CGRTFVLPNEQAAYDACIADKGSLFERQAAIRARLGELGVPVEGEPPPAPDPAG 236
C V P Y AC + L ++AA+RARL + G+ GE P + G
Sbjct 231 CAVNIVGPLPPPQYAACQQELAFLQGQEAALRARLADFGIH-PGEAPSSTSSGG 283
>gi|296170642|ref|ZP_06852217.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894631|gb|EFG74365.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=281
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/114 (54%), Positives = 80/114 (71%), Gaps = 0/114 (0%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
L+ RT AD VSG+ + L +A+ +AR GA + AA+ RV YAV+DA +AGF V EDLSV
Sbjct 46 LQTRTYADKLKVSGLVDQLHEAAKVARAGASDLYAARSRVRYAVEDARDAGFAVGEDLSV 105
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTV 115
TD T + A ++ARQAQAQA A DIRQRA QLIG++ +VA+K+ A A + V
Sbjct 106 TDRSTGGSSAARSARQAQAQAFAADIRQRAVQLIGLDEQVASKVNAAMAGVGNV 159
>gi|41407315|ref|NP_960151.1| hypothetical protein MAP1217c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395667|gb|AAS03534.1| hypothetical protein MAP_1217c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336458045|gb|EGO37032.1| hypothetical protein MAPs_17430 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=259
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/234 (35%), Positives = 115/234 (50%), Gaps = 33/234 (14%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LR RT AD VS + + L +A+ +AR GA + AA+ R+ AV DAH AGF V EDLSV
Sbjct 58 LRSRTYADKVKVSDMVDQLHEAAKVARAGATDLSAARSRMRNAVVDAHEAGFYVHEDLSV 117
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
TD T + A++A R+A+A+A A DI QRA LI + A +I+ A A LN + P
Sbjct 118 TDLSTGNSSADRAIREAEAEAYAADIHQRAADLIRADVRTADRISNAMAGLNG----QVP 173
Query 122 IAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYNA 181
+PS PTP P DP ++ W + +I +N
Sbjct 174 ESPSTPTPQPSE--------------------CADPTELLH-----DWSELINEINEHNE 208
Query 182 RCGRTFVLPNEQAAYDACIADKGSLFERQAAIRARLGELGVPVEGEPPPAPDPA 235
R + P E AAY+ + +L + + + L + G+P P PAP P+
Sbjct 209 RQYNPYD-PAEVAAYEE---EYLNLNAKLLKLSSELLDCGIPTSVTPAPAPTPS 258
>gi|118464287|ref|YP_882469.1| hypothetical protein MAV_3287 [Mycobacterium avium 104]
gi|118165574|gb|ABK66471.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=232
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/234 (35%), Positives = 115/234 (50%), Gaps = 33/234 (14%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LR RT AD VS + + L +A+ +AR GA + AA+ R+ AV DAH AGF V EDLSV
Sbjct 31 LRSRTYADKVKVSDMVDQLHEAARVARAGATDLSAARSRMRNAVVDAHEAGFYVHEDLSV 90
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
TD T + A++A R+A+A+A A DI QRA LI + A +I+ A A LN + P
Sbjct 91 TDLSTGNSSADRAIREAEAEAYAADIHQRAADLIRADVRTADRISNAMAGLNG----QVP 146
Query 122 IAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDMTAVQARAAWDAVNADIARYNA 181
+PS PTP P DP ++ W + +I +N
Sbjct 147 ESPSTPTPQPSE--------------------CADPTELLH-----DWSELINEINEHNE 181
Query 182 RCGRTFVLPNEQAAYDACIADKGSLFERQAAIRARLGELGVPVEGEPPPAPDPA 235
R + P E AAY+ + +L + + + L + G+P P PAP P+
Sbjct 182 RQYNPYD-PAEVAAYEE---EYLNLNAKLLKLSSELLDCGIPTSVTPAPAPTPS 231
>gi|296164510|ref|ZP_06847081.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295900110|gb|EFG79545.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=406
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/156 (43%), Positives = 93/156 (60%), Gaps = 8/156 (5%)
Query 2 LRQRTGADLQIVSGIAEHLRQASGLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSV 61
LR T AD+ S A+ L A+ +AR GA + A+ R+ YAV+DA AGF+V +DLSV
Sbjct 59 LRTGTHADMMATSRAADQLLLAAKVARNGATDLYGARSRLRYAVEDADAAGFDVGQDLSV 118
Query 62 TDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
D + +AARQAQAQA A DIRQRA QL+ ++ +VA K+ ATA + +P
Sbjct 119 ADRSYGASATIRAARQAQAQAFAADIRQRAAQLVALDQQVAGKVTAATAGIRDTFPPDPG 178
Query 122 IAPSLPTPVPHNEKPQIHAVD-RSWKQDPPSPMPGD 156
A S PH +P++ AVD ++++DPP P D
Sbjct 179 AATS-----PH--EPEVRAVDNHTFQRDPPPPGSTD 207
>gi|340627558|ref|YP_004746010.1| hypothetical protein MCAN_25831 [Mycobacterium canettii CIPT
140010059]
gi|340005748|emb|CCC44914.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=361
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/127 (36%), Positives = 66/127 (52%), Gaps = 11/127 (8%)
Query 41 VIYAVQDAHNAGFNVEEDLSVTDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHE 100
++ AV DA GF V ED +VTD T + ++AAR QAQ A IR R L+ + E
Sbjct 1 MLDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRE 60
Query 101 VAAKIATATAPLNTVGFHEPPIAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPG--DPK 158
+A +++ AT L+ + F E P + TP + + AVD ++Q PP PG
Sbjct 61 IATRVSAATQGLDELAFEE---VPGVDTPA----EDGVQAVD--FRQAPPPAAPGGMSSG 111
Query 159 DMTAVQA 165
D+ A+ A
Sbjct 112 DIDAIDA 118
>gi|254551592|ref|ZP_05142039.1| hypothetical protein Mtube_14227 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=403
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/122 (35%), Positives = 65/122 (54%), Gaps = 12/122 (9%)
Query 41 VIYAVQDAHNAGFNVEEDLSVTDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHE 100
++ AV DA GF V ED +VTD T + ++AAR QAQ A IR R L+ + +
Sbjct 1 MLDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRD 60
Query 101 VAAKIATATAPLNTVGFHEPPIAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDM 160
+A +++ AT L+ + F + P + TP + + AVD ++Q PP PG P M
Sbjct 61 IATRVSAATQGLDELAFED---VPGVDTPA----EDGVQAVD--FRQAPP---PGAPGGM 108
Query 161 TA 162
++
Sbjct 109 SS 110
>gi|31793724|ref|NP_856217.1| hypothetical protein Mb2571 [Mycobacterium bovis AF2122/97]
gi|121638426|ref|YP_978650.1| hypothetical protein BCG_2564 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148823737|ref|YP_001288491.1| hypothetical protein TBFG_12562 [Mycobacterium tuberculosis F11]
54 more sequence titles
Length=403
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/122 (35%), Positives = 65/122 (54%), Gaps = 12/122 (9%)
Query 41 VIYAVQDAHNAGFNVEEDLSVTDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHE 100
++ AV DA GF V ED +VTD T + ++AAR QAQ A IR R L+ + +
Sbjct 1 MLDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRD 60
Query 101 VAAKIATATAPLNTVGFHEPPIAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDM 160
+A +++ AT L+ + F + P + TP + + AVD ++Q PP PG P M
Sbjct 61 IATRVSAATQGLDELAFED---VPGVDTPA----EDGVQAVD--FRQAPP---PGAPGGM 108
Query 161 TA 162
++
Sbjct 109 SS 110
>gi|15609679|ref|NP_217058.1| hypothetical protein Rv2542 [Mycobacterium tuberculosis H37Rv]
gi|148662380|ref|YP_001283903.1| hypothetical protein MRA_2570 [Mycobacterium tuberculosis H37Ra]
gi|167968850|ref|ZP_02551127.1| hypothetical protein MtubH3_12785 [Mycobacterium tuberculosis
H37Ra]
gi|1781060|emb|CAB06196.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|148506532|gb|ABQ74341.1| hypothetical protein MRA_2570 [Mycobacterium tuberculosis H37Ra]
Length=403
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/122 (35%), Positives = 65/122 (54%), Gaps = 12/122 (9%)
Query 41 VIYAVQDAHNAGFNVEEDLSVTDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHE 100
++ AV DA GF V ED +VTD T + ++AAR QAQ A IR R L+ + +
Sbjct 1 MLDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRD 60
Query 101 VAAKIATATAPLNTVGFHEPPIAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDM 160
+A +++ AT L+ + F + P + TP + + AVD ++Q PP PG P M
Sbjct 61 IATRVSAATQGLDELAFED---VPGVDTPA----EDGVQAVD--FRQAPP---PGAPGGM 108
Query 161 TA 162
++
Sbjct 109 SS 110
>gi|307085228|ref|ZP_07494341.1| hypothetical protein TMLG_02269 [Mycobacterium tuberculosis SUMu012]
gi|308365183|gb|EFP54034.1| hypothetical protein TMLG_02269 [Mycobacterium tuberculosis SUMu012]
Length=446
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/122 (35%), Positives = 65/122 (54%), Gaps = 12/122 (9%)
Query 41 VIYAVQDAHNAGFNVEEDLSVTDTRTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHE 100
++ AV DA GF V ED +VTD T + ++AAR QAQ A IR R L+ + +
Sbjct 1 MLDAVSDARRDGFAVGEDYTVTDRSTGGSRQQRAARLGQAQGHADFIRHRVGALLATDRD 60
Query 101 VAAKIATATAPLNTVGFHEPPIAPSLPTPVPHNEKPQIHAVDRSWKQDPPSPMPGDPKDM 160
+A +++ AT L+ + F + P + TP + + AVD ++Q PP PG P M
Sbjct 61 IATRVSAATQGLDELAFED---VPGVDTPA----EDGVQAVD--FRQAPP---PGAPGGM 108
Query 161 TA 162
++
Sbjct 109 SS 110
>gi|15607754|ref|NP_215128.1| hypothetical protein Rv0614 [Mycobacterium tuberculosis H37Rv]
gi|31791797|ref|NP_854290.1| hypothetical protein Mb0631 [Mycobacterium bovis AF2122/97]
gi|121636533|ref|YP_976756.1| hypothetical protein BCG_0661 [Mycobacterium bovis BCG str. Pasteur
1173P2]
25 more sequence titles
Length=330
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/97 (46%), Positives = 52/97 (54%), Gaps = 8/97 (8%)
Query 25 GLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSVTDTRTSRTFAEQAARQAQAQALA 84
G R G G + A R + + D F S+ RTS T AE+ AR AQAQ A
Sbjct 73 GWPRLGFGVVTAPTR---WTLADGRELLF-----FSLPGPRTSGTAAERVARHAQAQTFA 124
Query 85 GDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
GDIRQRA QL+ E EVA+KI ATA + T F E P
Sbjct 125 GDIRQRAIQLVVSEQEVASKITAATAGIATTTFPETP 161
>gi|289568550|ref|ZP_06448777.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289756693|ref|ZP_06516071.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|308231601|ref|ZP_07663890.1| hypothetical protein TMAG_02494 [Mycobacterium tuberculosis SUMu001]
21 more sequence titles
Length=304
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/97 (46%), Positives = 52/97 (54%), Gaps = 8/97 (8%)
Query 25 GLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSVTDTRTSRTFAEQAARQAQAQALA 84
G R G G + A R + + D F S+ RTS T AE+ AR AQAQ A
Sbjct 47 GWPRLGFGVVTAPTR---WTLADGRELLF-----FSLPGPRTSGTAAERVARHAQAQTFA 98
Query 85 GDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
GDIRQRA QL+ E EVA+KI ATA + T F E P
Sbjct 99 GDIRQRAIQLVVSEQEVASKITAATAGIATTTFPETP 135
>gi|15840016|ref|NP_335053.1| hypothetical protein MT0644 [Mycobacterium tuberculosis CDC1551]
gi|253797551|ref|YP_003030552.1| hypothetical protein TBMG_00622 [Mycobacterium tuberculosis KZN
1435]
gi|289552866|ref|ZP_06442076.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|13880160|gb|AAK44867.1| hypothetical protein MT0644 [Mycobacterium tuberculosis CDC1551]
gi|253319053|gb|ACT23656.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289437498|gb|EFD19991.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|328457331|gb|AEB02754.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length=297
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/97 (46%), Positives = 52/97 (54%), Gaps = 8/97 (8%)
Query 25 GLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSVTDTRTSRTFAEQAARQAQAQALA 84
G R G G + A R + + D F S+ RTS T AE+ AR AQAQ A
Sbjct 40 GWPRLGFGVVTAPTR---WTLADGRELLF-----FSLPGPRTSGTAAERVARHAQAQTFA 91
Query 85 GDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
GDIRQRA QL+ E EVA+KI ATA + T F E P
Sbjct 92 GDIRQRAIQLVVSEQEVASKITAATAGIATTTFPETP 128
>gi|340625637|ref|YP_004744089.1| hypothetical protein MCAN_06161 [Mycobacterium canettii CIPT
140010059]
gi|340003827|emb|CCC42956.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=330
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/97 (46%), Positives = 52/97 (54%), Gaps = 8/97 (8%)
Query 25 GLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSVTDTRTSRTFAEQAARQAQAQALA 84
G R G G + A R + + D F S+ RTS T AE+ AR AQAQ A
Sbjct 73 GWPRLGFGVVTAPTR---WTLADGRELLF-----FSLPGPRTSGTAAERVARHAQAQTFA 124
Query 85 GDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
GDIRQRA QL+ E EVA+KI ATA + T F E P
Sbjct 125 GDIRQRAIQLVVSEQEVASKITAATAGIATTTFPETP 161
>gi|289749113|ref|ZP_06508491.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289689700|gb|EFD57129.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|323720969|gb|EGB30034.1| hypothetical protein TMMG_03320 [Mycobacterium tuberculosis CDC1551A]
Length=266
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/97 (46%), Positives = 52/97 (54%), Gaps = 8/97 (8%)
Query 25 GLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSVTDTRTSRTFAEQAARQAQAQALA 84
G R G G + A R + + D F S+ RTS T AE+ AR AQAQ A
Sbjct 9 GWPRLGFGVVTAPTR---WTLADGRELLF-----FSLPGPRTSGTAAERVARHAQAQTFA 60
Query 85 GDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
GDIRQRA QL+ E EVA+KI ATA + T F E P
Sbjct 61 GDIRQRAIQLVVSEQEVASKITAATAGIATTTFPETP 97
>gi|326905163|gb|EGE52096.1| hypothetical protein TBPG_03095 [Mycobacterium tuberculosis W-148]
Length=346
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/97 (46%), Positives = 52/97 (54%), Gaps = 8/97 (8%)
Query 25 GLAREGAGTIGAAQRRVIYAVQDAHNAGFNVEEDLSVTDTRTSRTFAEQAARQAQAQALA 84
G R G G + A R + + D F S+ RTS T AE+ AR AQAQ A
Sbjct 9 GWPRLGFGVVTAPTR---WTLADGRELLF-----FSLPGPRTSGTAAERVARHAQAQTFA 60
Query 85 GDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
GDIRQRA QL+ E EVA+KI ATA + T F E P
Sbjct 61 GDIRQRAIQLVVSEQEVASKITAATAGIATTTFPETP 97
>gi|148821816|ref|YP_001286570.1| hypothetical protein TBFG_10625 [Mycobacterium tuberculosis F11]
gi|167969039|ref|ZP_02551316.1| hypothetical protein MtubH3_13837 [Mycobacterium tuberculosis
H37Ra]
gi|254230950|ref|ZP_04924277.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
9 more sequence titles
Length=249
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/57 (62%), Positives = 39/57 (69%), Gaps = 0/57 (0%)
Query 65 RTSRTFAEQAARQAQAQALAGDIRQRATQLIGVEHEVAAKIATATAPLNTVGFHEPP 121
RTS T AE+ AR AQAQ AGDIRQRA QL+ E EVA+KI ATA + T F E P
Sbjct 24 RTSGTAAERVARHAQAQTFAGDIRQRAIQLVVSEQEVASKITAATAGIATTTFPETP 80
Lambda K H
0.314 0.132 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 558531753480
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40