BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1950c Length=63 Score E Sequences producing significant alignments: (Bits) Value gi|15609087|ref|NP_216466.1| hypothetical protein Rv1950c [Mycob... 133 1e-29 gi|298525444|ref|ZP_07012853.1| conserved hypothetical protein [... 131 3e-29 gi|289574633|ref|ZP_06454860.1| transmembrane protein [Mycobacte... 129 1e-28 gi|340626959|ref|YP_004745411.1| hypothetical protein MCAN_19661... 116 9e-25 gi|15609214|ref|NP_216593.1| transmembrane protein [Mycobacteriu... 87.8 4e-16 gi|118616857|ref|YP_905189.1| hypothetical protein MUL_1136 [Myc... 87.0 8e-16 gi|183980513|ref|YP_001848804.1| hypothetical protein MMAR_0484 ... 87.0 9e-16 gi|240172763|ref|ZP_04751422.1| hypothetical protein MkanA1_2583... 86.7 1e-15 gi|118464810|ref|YP_882824.1| hypothetical protein MAV_3647 [Myc... 83.6 1e-14 gi|254774328|ref|ZP_05215844.1| hypothetical protein MaviaA2_066... 80.5 8e-14 gi|41408570|ref|NP_961406.1| hypothetical protein MAP2472 [Mycob... 80.5 8e-14 gi|336460919|gb|EGO39802.1| hypothetical protein MAPs_35850 [Myc... 80.1 9e-14 gi|118466269|ref|YP_881458.1| hypothetical protein MAV_2254 [Myc... 79.7 1e-13 gi|118464941|ref|YP_880720.1| hypothetical protein MAV_1479 [Myc... 79.3 2e-13 gi|342858515|ref|ZP_08715170.1| hypothetical protein MCOL_06556 ... 79.0 2e-13 gi|118464060|ref|YP_880692.1| hypothetical protein MAV_1450 [Myc... 79.0 2e-13 gi|342860951|ref|ZP_08717600.1| hypothetical protein MCOL_18807 ... 78.2 4e-13 gi|118465678|ref|YP_879971.1| hypothetical protein MAV_0692 [Myc... 76.6 1e-12 gi|183980150|ref|YP_001848441.1| hypothetical protein MMAR_0116 ... 76.6 1e-12 gi|183984032|ref|YP_001852323.1| hypothetical protein MMAR_4061 ... 74.7 5e-12 gi|240173425|ref|ZP_04752083.1| putative transmembrane protein [... 68.2 4e-10 gi|118616851|ref|YP_905183.1| hypothetical protein MUL_1130 [Myc... 66.2 2e-09 gi|183980508|ref|YP_001848799.1| hypothetical protein MMAR_0479 ... 66.2 2e-09 gi|183983552|ref|YP_001851843.1| hypothetical protein MMAR_3572 ... 48.9 3e-04 gi|41407315|ref|NP_960151.1| hypothetical protein MAP1217c [Myco... 45.1 0.003 gi|296170642|ref|ZP_06852217.1| conserved hypothetical protein [... 41.2 0.049 gi|120406653|ref|YP_956482.1| hypothetical protein Mvan_5711 [My... 40.8 0.063 gi|15842075|ref|NP_337112.1| hypothetical protein MT2615.1 [Myco... 38.9 0.27 gi|118468163|ref|YP_889699.1| hypothetical protein MSMEG_5460 [M... 38.1 0.44 gi|308405431|ref|ZP_07494340.2| hypothetical protein TMLG_02268 ... 37.4 0.78 gi|240172527|ref|ZP_04751186.1| hypothetical protein MkanA1_2465... 37.0 1.1 gi|333989957|ref|YP_004522571.1| hypothetical protein JDM601_131... 35.8 1.9 gi|118462425|ref|YP_879781.1| hypothetical protein MAV_0500 [Myc... 35.4 2.7 gi|294140100|ref|YP_003556078.1| sensory box histidine kinase/re... 35.0 3.5 gi|240170349|ref|ZP_04749008.1| hypothetical protein MkanA1_1363... 34.3 5.7 gi|342860790|ref|ZP_08717440.1| hypothetical protein MCOL_18003 ... 33.9 7.3 >gi|15609087|ref|NP_216466.1| hypothetical protein Rv1950c [Mycobacterium tuberculosis H37Rv] gi|15841421|ref|NP_336458.1| hypothetical protein MT2000 [Mycobacterium tuberculosis CDC1551] gi|31793142|ref|NP_855635.1| hypothetical protein Mb1985c [Mycobacterium bovis AF2122/97] 62 more sequence titles Length=63 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 62/63 (99%), Positives = 63/63 (100%), Gaps = 0/63 (0%) Query 1 LLPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDGCDSEPAL 60 +LPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDGCDSEPAL Sbjct 1 MLPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDGCDSEPAL 60 Query 61 TYR 63 TYR Sbjct 61 TYR 63 >gi|298525444|ref|ZP_07012853.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298495238|gb|EFI30532.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length=63 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 61/63 (97%), Positives = 62/63 (99%), Gaps = 0/63 (0%) Query 1 LLPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDGCDSEPAL 60 +LPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGA GDGCDSEPAL Sbjct 1 MLPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGASGDGCDSEPAL 60 Query 61 TYR 63 TYR Sbjct 61 TYR 63 >gi|289574633|ref|ZP_06454860.1| transmembrane protein [Mycobacterium tuberculosis K85] gi|289539064|gb|EFD43642.1| transmembrane protein [Mycobacterium tuberculosis K85] Length=63 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 61/63 (97%), Positives = 62/63 (99%), Gaps = 0/63 (0%) Query 1 LLPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDGCDSEPAL 60 +LPTLSHIHAWDTEHLIEAAYYWTKVADQ EDVFLEMRNRSHFIAWEGAGGDGCDSEPAL Sbjct 1 MLPTLSHIHAWDTEHLIEAAYYWTKVADQGEDVFLEMRNRSHFIAWEGAGGDGCDSEPAL 60 Query 61 TYR 63 TYR Sbjct 61 TYR 63 >gi|340626959|ref|YP_004745411.1| hypothetical protein MCAN_19661 [Mycobacterium canettii CIPT 140010059] gi|340005149|emb|CCC44298.1| putative uncharacterized protein flags: fragment [Mycobacterium canettii CIPT 140010059] Length=371 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 52/53 (99%), Positives = 53/53 (100%), Gaps = 0/53 (0%) Query 1 LLPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDG 53 +LPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDG Sbjct 1 MLPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDG 53 >gi|15609214|ref|NP_216593.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|15841566|ref|NP_336603.1| hypothetical protein MT2137 [Mycobacterium tuberculosis CDC1551] gi|31793259|ref|NP_855752.1| transmembrane protein [Mycobacterium bovis AF2122/97] 80 more sequence titles Length=323 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 38/53 (72%), Positives = 45/53 (85%), Gaps = 0/53 (0%) Query 1 LLPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDG 53 +L TLS I AW TEHLI+AA YWT+ AD+WEDVFL+MRN++H IAW GAGGDG Sbjct 1 MLATLSQIRAWSTEHLIDAAGYWTETADRWEDVFLQMRNQAHAIAWNGAGGDG 53 >gi|118616857|ref|YP_905189.1| hypothetical protein MUL_1136 [Mycobacterium ulcerans Agy99] gi|118568967|gb|ABL03718.1| conserved hypothetical transmembrane protein [Mycobacterium ulcerans Agy99] Length=248 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 37/49 (76%), Positives = 42/49 (86%), Gaps = 0/49 (0%) Query 4 TLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGD 52 TLS + AW TEHLIEAA YW+K ADQWEDVFL+MRN+SH + WEGAGGD Sbjct 4 TLSQVQAWRTEHLIEAATYWSKTADQWEDVFLQMRNQSHTLVWEGAGGD 52 >gi|183980513|ref|YP_001848804.1| hypothetical protein MMAR_0484 [Mycobacterium marinum M] gi|183173839|gb|ACC38949.1| conserved hypothetical transmembrane protein [Mycobacterium marinum M] Length=204 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 37/52 (72%), Positives = 44/52 (85%), Gaps = 0/52 (0%) Query 1 LLPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGD 52 ++ TLS + AW TEHLIEAA YW+K ADQWEDVFL+MRN+SH + WEGAGGD Sbjct 1 MVLTLSQVQAWSTEHLIEAATYWSKTADQWEDVFLQMRNQSHTLVWEGAGGD 52 >gi|240172763|ref|ZP_04751422.1| hypothetical protein MkanA1_25837 [Mycobacterium kansasii ATCC 12478] Length=354 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 35/54 (65%), Positives = 46/54 (86%), Gaps = 0/54 (0%) Query 1 LLPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDGC 54 +LPTLS + AWDTEHL++AA+YW++ AD WEDVFL+MRN+SH I W+GAGG+ Sbjct 1 MLPTLSQLQAWDTEHLVDAAHYWSRTADLWEDVFLQMRNQSHTIVWDGAGGEAL 54 >gi|118464810|ref|YP_882824.1| hypothetical protein MAV_3647 [Mycobacterium avium 104] gi|118166097|gb|ABK66994.1| conserved hypothetical protein [Mycobacterium avium 104] Length=235 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/50 (70%), Positives = 42/50 (84%), Gaps = 0/50 (0%) Query 4 TLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDG 53 TLS + AW TEHL+ AA YW+K ADQWEDVFL+MRN+S+ I W+GAGGDG Sbjct 4 TLSQVRAWTTEHLVNAASYWSKTADQWEDVFLQMRNQSYSITWKGAGGDG 53 >gi|254774328|ref|ZP_05215844.1| hypothetical protein MaviaA2_06625 [Mycobacterium avium subsp. avium ATCC 25291] Length=362 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 35/50 (70%), Positives = 39/50 (78%), Gaps = 0/50 (0%) Query 4 TLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDG 53 TLS I AW TEHLIEAA YWT+ AD+WED FL MRN++ IAW GAGGD Sbjct 4 TLSQILAWSTEHLIEAAGYWTQTADRWEDGFLTMRNQAQSIAWRGAGGDA 53 >gi|41408570|ref|NP_961406.1| hypothetical protein MAP2472 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396928|gb|AAS04789.1| hypothetical protein MAP_2472 [Mycobacterium avium subsp. paratuberculosis K-10] Length=362 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 35/50 (70%), Positives = 39/50 (78%), Gaps = 0/50 (0%) Query 4 TLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDG 53 TLS I AW TEHLIEAA YWT+ AD+WED FL MRN++ IAW GAGGD Sbjct 4 TLSQILAWSTEHLIEAAGYWTQTADRWEDGFLTMRNQAQSIAWRGAGGDA 53 >gi|336460919|gb|EGO39802.1| hypothetical protein MAPs_35850 [Mycobacterium avium subsp. paratuberculosis S397] Length=362 Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 35/50 (70%), Positives = 39/50 (78%), Gaps = 0/50 (0%) Query 4 TLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDG 53 TLS I AW TEHLIEAA YWT+ AD+WED FL MRN++ IAW GAGGD Sbjct 4 TLSQILAWSTEHLIEAAGYWTQTADRWEDGFLTMRNQAQSIAWRGAGGDA 53 >gi|118466269|ref|YP_881458.1| hypothetical protein MAV_2254 [Mycobacterium avium 104] gi|118167556|gb|ABK68453.1| conserved hypothetical protein [Mycobacterium avium 104] Length=354 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 33/50 (66%), Positives = 38/50 (76%), Gaps = 0/50 (0%) Query 4 TLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDG 53 TLS I AW TEHLI+AA YWT+ AD+WED FL MRN++ I W GAGGD Sbjct 4 TLSQIEAWSTEHLIDAAAYWTQTADRWEDAFLTMRNQAQSITWHGAGGDA 53 >gi|118464941|ref|YP_880720.1| hypothetical protein MAV_1479 [Mycobacterium avium 104] gi|118166228|gb|ABK67125.1| conserved hypothetical protein [Mycobacterium avium 104] Length=362 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 34/50 (68%), Positives = 38/50 (76%), Gaps = 0/50 (0%) Query 4 TLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDG 53 TLS I AW TEHLIEAA YWT+ AD+WED FL MRN++ I W GAGGD Sbjct 4 TLSQILAWSTEHLIEAAAYWTQTADRWEDGFLTMRNQAQSITWRGAGGDA 53 >gi|342858515|ref|ZP_08715170.1| hypothetical protein MCOL_06556 [Mycobacterium colombiense CECT 3035] gi|342134219|gb|EGT87399.1| hypothetical protein MCOL_06556 [Mycobacterium colombiense CECT 3035] Length=358 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 31/51 (61%), Positives = 38/51 (75%), Gaps = 0/51 (0%) Query 3 PTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDG 53 PTLS I W TEHL++AA YWT+ AD+WED FL MRN++ I W GAGG+ Sbjct 3 PTLSQIEVWSTEHLVDAAAYWTQTADRWEDAFLTMRNQAQSITWHGAGGEA 53 >gi|118464060|ref|YP_880692.1| hypothetical protein MAV_1450 [Mycobacterium avium 104] gi|118165347|gb|ABK66244.1| conserved hypothetical protein [Mycobacterium avium 104] Length=353 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 34/50 (68%), Positives = 38/50 (76%), Gaps = 0/50 (0%) Query 4 TLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDG 53 TLS I AW TEHLIEAA YWT+ AD+WED FL MRN++ I W GAGGD Sbjct 4 TLSQILAWSTEHLIEAAGYWTQTADRWEDGFLTMRNQAQSITWRGAGGDA 53 >gi|342860951|ref|ZP_08717600.1| hypothetical protein MCOL_18807 [Mycobacterium colombiense CECT 3035] gi|342131395|gb|EGT84665.1| hypothetical protein MCOL_18807 [Mycobacterium colombiense CECT 3035] Length=403 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 35/50 (70%), Positives = 39/50 (78%), Gaps = 0/50 (0%) Query 4 TLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDG 53 TLS I AW T HL +AA YW+K ADQWED FL MRN+SH IAW+GAGGD Sbjct 5 TLSQIRAWSTAHLTDAASYWSKTADQWEDTFLTMRNQSHSIAWKGAGGDA 54 >gi|118465678|ref|YP_879971.1| hypothetical protein MAV_0692 [Mycobacterium avium 104] gi|118166965|gb|ABK67862.1| conserved hypothetical protein [Mycobacterium avium 104] Length=256 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/49 (68%), Positives = 38/49 (78%), Gaps = 0/49 (0%) Query 4 TLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGD 52 TLS I AW TEHLI+AA YWT+ AD+WED FL MRN++ I W GAGGD Sbjct 4 TLSQIQAWSTEHLIDAAAYWTQTADRWEDAFLTMRNQAQSITWHGAGGD 52 >gi|183980150|ref|YP_001848441.1| hypothetical protein MMAR_0116 [Mycobacterium marinum M] gi|183173476|gb|ACC38586.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=339 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 31/49 (64%), Positives = 38/49 (78%), Gaps = 0/49 (0%) Query 4 TLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGD 52 TLS + AW TEHLI+ A YWTK ADQWE+ F +MRN+S+ + W GAGGD Sbjct 4 TLSQVRAWSTEHLIDTAGYWTKTADQWENAFFQMRNQSYALGWSGAGGD 52 >gi|183984032|ref|YP_001852323.1| hypothetical protein MMAR_4061 [Mycobacterium marinum M] gi|183177358|gb|ACC42468.1| conserved hypothetical transmembrane protein [Mycobacterium marinum M] Length=336 Score = 74.7 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 30/48 (63%), Positives = 38/48 (80%), Gaps = 0/48 (0%) Query 4 TLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGG 51 TLS I AW TEHLI++A YWTK AD+WED F ++RN+S+ + W GAGG Sbjct 4 TLSQIRAWSTEHLIDSAGYWTKTADRWEDTFFQIRNQSYALDWNGAGG 51 >gi|240173425|ref|ZP_04752083.1| putative transmembrane protein [Mycobacterium kansasii ATCC 12478] Length=44 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 29/43 (68%), Positives = 35/43 (82%), Gaps = 0/43 (0%) Query 2 LPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFI 44 + TLS + W T+HLIEAA YWTK ADQWEDVFL+MRN+SH + Sbjct 1 MATLSQVRTWSTQHLIEAAGYWTKTADQWEDVFLQMRNQSHTL 43 >gi|118616851|ref|YP_905183.1| hypothetical protein MUL_1130 [Mycobacterium ulcerans Agy99] gi|118568961|gb|ABL03712.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=98 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 3/50 (6%) Query 1 LLPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAG 50 ++PTLS + AW T HLIEA YWT+ ADQWEDVFL+MR H +A G G Sbjct 1 MVPTLSQVRAWSTGHLIEATSYWTQTADQWEDVFLQMR---HEVASHGPG 47 >gi|183980508|ref|YP_001848799.1| hypothetical protein MMAR_0479 [Mycobacterium marinum M] gi|183173834|gb|ACC38944.1| conserved hypothetical protein [Mycobacterium marinum M] Length=98 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 3/50 (6%) Query 1 LLPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAG 50 ++PTLS + AW T HLIEA YWT+ ADQWEDVFL+MR H +A G G Sbjct 1 MVPTLSQVRAWSTGHLIEATSYWTQTADQWEDVFLQMR---HEVASHGPG 47 >gi|183983552|ref|YP_001851843.1| hypothetical protein MMAR_3572 [Mycobacterium marinum M] gi|183176878|gb|ACC41988.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=301 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/52 (47%), Positives = 32/52 (62%), Gaps = 0/52 (0%) Query 2 LPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDG 53 LPTLS++ AW TEHL EAA WT +W +VF ++ S + W+G G D Sbjct 8 LPTLSNLMAWPTEHLTEAAASWTAAGHRWYEVFNQIWRDSLSVDWKGIGADA 59 >gi|41407315|ref|NP_960151.1| hypothetical protein MAP1217c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395667|gb|AAS03534.1| hypothetical protein MAP_1217c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336458045|gb|EGO37032.1| hypothetical protein MAPs_17430 [Mycobacterium avium subsp. paratuberculosis S397] Length=259 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (55%), Gaps = 0/55 (0%) Query 2 LPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDGCDS 56 +P LS + AW T+HL EAA +W D+W + F E S I W+G G + S Sbjct 6 IPRLSELLAWPTDHLTEAADHWMSTRDRWYEAFTETWKDSLSIGWQGNGAEALRS 60 >gi|296170642|ref|ZP_06852217.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894631|gb|EFG74365.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=281 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 19/43 (45%), Positives = 25/43 (59%), Gaps = 0/43 (0%) Query 10 AWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGD 52 AW TEHL AA YW+ ++W DVF + + S + W G G D Sbjct 2 AWPTEHLTNAADYWSSTGNRWYDVFAQTWHESLSVDWRGTGAD 44 >gi|120406653|ref|YP_956482.1| hypothetical protein Mvan_5711 [Mycobacterium vanbaalenii PYR-1] gi|119959471|gb|ABM16476.1| hypothetical protein Mvan_5711 [Mycobacterium vanbaalenii PYR-1] Length=266 Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Query 2 LPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRN--RS-HFIAWEG 48 LPTLS I W+T HL AA WT A+ WE F + + RS H WEG Sbjct 8 LPTLSQIENWETAHLACAARRWTAAAEHWESSFGLIADGVRSPHGTQWEG 57 >gi|15842075|ref|NP_337112.1| hypothetical protein MT2615.1 [Mycobacterium tuberculosis CDC1551] gi|13882356|gb|AAK46926.1| hypothetical protein MT2615.1 [Mycobacterium tuberculosis CDC1551] Length=373 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Query 2 LPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRN---RSHFIAWEG 48 LP LS + + HL EAA +W ++A +WE E+R+ R WEG Sbjct 142 LPPLSAVQSTSFAHLSEAAAHWRRLATRWERALAEVRDSMRRPGGTDWEG 191 >gi|118468163|ref|YP_889699.1| hypothetical protein MSMEG_5460 [Mycobacterium smegmatis str. MC2 155] gi|118169450|gb|ABK70346.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=184 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 16/33 (49%), Positives = 22/33 (67%), Gaps = 0/33 (0%) Query 2 LPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVF 34 +PT S I WDT HL +AA W ++A Q E++F Sbjct 13 IPTRSQIENWDTSHLDDAAMRWRQMAAQSEELF 45 >gi|308405431|ref|ZP_07494340.2| hypothetical protein TMLG_02268 [Mycobacterium tuberculosis SUMu012] gi|308365182|gb|EFP54033.1| hypothetical protein TMLG_02268 [Mycobacterium tuberculosis SUMu012] Length=114 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Query 2 LPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRN---RSHFIAWEG 48 LP LS + + HL EAA +W ++A +WE E+R+ R WEG Sbjct 6 LPPLSAVQSTSFAHLSEAAAHWRRLATRWERALAEVRDSMRRPGGTDWEG 55 >gi|240172527|ref|ZP_04751186.1| hypothetical protein MkanA1_24653 [Mycobacterium kansasii ATCC 12478] Length=236 Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/56 (27%), Positives = 32/56 (58%), Gaps = 0/56 (0%) Query 1 LLPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGDGCDS 56 ++PT S + A+ HLIE A +W ++A + V +++++ + W+G G + + Sbjct 1 MIPTQSALRAYTVSHLIENAAHWRELAARRRSVVGTIKSQADSLDWQGQGDEAMKA 56 >gi|333989957|ref|YP_004522571.1| hypothetical protein JDM601_1317 [Mycobacterium sp. JDM601] gi|333485925|gb|AEF35317.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=49 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/39 (39%), Positives = 25/39 (65%), Gaps = 0/39 (0%) Query 3 PTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRS 41 P+LS + A ++L + W+++AD WE+ F E+RN S Sbjct 8 PSLSEVRAASWDYLKASGESWSRLADTWENAFAEVRNAS 46 >gi|118462425|ref|YP_879781.1| hypothetical protein MAV_0500 [Mycobacterium avium 104] gi|118163712|gb|ABK64609.1| conserved hypothetical protein [Mycobacterium avium 104] Length=468 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/52 (39%), Positives = 25/52 (49%), Gaps = 3/52 (5%) Query 2 LPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRN---RSHFIAWEGAG 50 LPTLS + A + +HL A W + WE F E+ N R W GAG Sbjct 4 LPTLSEVRAANWDHLRTNAAAWRSLGRTWESAFTEVHNASLRPGGTDWTGAG 55 >gi|294140100|ref|YP_003556078.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] gi|293326569|dbj|BAJ01300.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] Length=1486 Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 16/43 (38%), Positives = 21/43 (49%), Gaps = 4/43 (9%) Query 24 TKVADQWEDVFLEMRNRSHFIAWEGAGG----DGCDSEPALTY 62 T + D WE V N FIAW+G G DG D + ++ Y Sbjct 260 TPIKDNWEQVLQRQINTRPFIAWQGRGANDGTDGTDGKKSIAY 302 >gi|240170349|ref|ZP_04749008.1| hypothetical protein MkanA1_13635 [Mycobacterium kansasii ATCC 12478] Length=346 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 18/47 (39%), Positives = 25/47 (54%), Gaps = 0/47 (0%) Query 2 LPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEG 48 LPTLS + W EHL EA YW +A + D ++ + + WEG Sbjct 5 LPTLSQLLNWPYEHLNEAPAYWQALASKCYDAVGQVWRDTLNMDWEG 51 >gi|342860790|ref|ZP_08717440.1| hypothetical protein MCOL_18003 [Mycobacterium colombiense CECT 3035] gi|342131814|gb|EGT85071.1| hypothetical protein MCOL_18003 [Mycobacterium colombiense CECT 3035] Length=356 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 18/51 (36%), Positives = 24/51 (48%), Gaps = 0/51 (0%) Query 2 LPTLSHIHAWDTEHLIEAAYYWTKVADQWEDVFLEMRNRSHFIAWEGAGGD 52 P LS + AW T HL EAA YW V + V ++ + W+G D Sbjct 7 FPLLSQVLAWPTRHLTEAADYWEAVGGRSYAVASQVWRDGLSVDWQGRAAD 57 Lambda K H 0.321 0.135 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131230491224 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40