BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1951c Length=98 Score E Sequences producing significant alignments: (Bits) Value gi|15609088|ref|NP_216467.1| hypothetical protein Rv1951c [Mycob... 186 7e-46 gi|15841422|ref|NP_336459.1| hypothetical protein MT2001 [Mycoba... 186 8e-46 gi|340626960|ref|YP_004745412.1| hypothetical protein MCAN_19671... 111 4e-23 gi|240172764|ref|ZP_04751423.1| hypothetical protein MkanA1_2584... 103 7e-21 gi|183980509|ref|YP_001848800.1| hypothetical protein MMAR_0480 ... 103 1e-20 gi|240173426|ref|ZP_04752084.1| hypothetical protein MkanA1_2919... 76.3 1e-12 gi|118466069|ref|YP_882823.1| hypothetical protein MAV_3646 [Myc... 75.9 2e-12 gi|183984078|ref|YP_001852369.1| hypothetical protein MMAR_4107 ... 67.4 6e-10 gi|118616852|ref|YP_905184.1| hypothetical protein MUL_1131 [Myc... 66.6 1e-09 gi|254774329|ref|ZP_05215845.1| hypothetical protein MaviaA2_066... 58.5 3e-07 gi|41408569|ref|NP_961405.1| hypothetical protein MAP2471 [Mycob... 58.2 4e-07 gi|296170641|ref|ZP_06852216.1| conserved hypothetical protein [... 58.2 5e-07 gi|118465025|ref|YP_880721.1| hypothetical protein MAV_1480 [Myc... 55.5 2e-06 gi|342858516|ref|ZP_08715171.1| hypothetical protein MCOL_06561 ... 52.4 2e-05 gi|183980151|ref|YP_001848442.1| hypothetical protein MMAR_0117 ... 47.4 8e-04 gi|15841567|ref|NP_336604.1| hypothetical protein MT2138 [Mycoba... 46.6 0.001 gi|118463827|ref|YP_879970.1| hypothetical protein MAV_0691 [Myc... 44.7 0.005 gi|183984031|ref|YP_001852322.1| hypothetical protein MMAR_4060 ... 43.1 0.012 gi|296164509|ref|ZP_06847080.1| conserved hypothetical protein [... 42.7 0.018 gi|41407316|ref|NP_960152.1| hypothetical protein MAP1218c [Myco... 40.0 0.12 gi|183983551|ref|YP_001851842.1| hypothetical protein MMAR_3571 ... 39.3 0.18 gi|118467080|ref|YP_881457.1| hypothetical protein MAV_2253 [Myc... 38.9 0.26 gi|183980512|ref|YP_001848803.1| hypothetical protein MMAR_0483 ... 37.7 0.60 gi|118616855|ref|YP_905187.1| hypothetical protein MUL_1134 [Myc... 35.0 3.7 >gi|15609088|ref|NP_216467.1| hypothetical protein Rv1951c [Mycobacterium tuberculosis H37Rv] gi|31793143|ref|NP_855636.1| hypothetical protein Mb1986c [Mycobacterium bovis AF2122/97] gi|121637856|ref|YP_978079.1| hypothetical protein BCG_1990c [Mycobacterium bovis BCG str. Pasteur 1173P2] 74 more sequence titles Length=98 Score = 186 bits (473), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 98/98 (100%), Positives = 98/98 (100%), Gaps = 0/98 (0%) Query 1 MKAGELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAF 60 MKAGELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAF Sbjct 1 MKAGELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAF 60 Query 61 TARTHATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV 98 TARTHATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV Sbjct 61 TARTHATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV 98 >gi|15841422|ref|NP_336459.1| hypothetical protein MT2001 [Mycobacterium tuberculosis CDC1551] gi|13881660|gb|AAK46273.1| hypothetical protein MT2001 [Mycobacterium tuberculosis CDC1551] Length=137 Score = 186 bits (473), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 98/98 (100%), Positives = 98/98 (100%), Gaps = 0/98 (0%) Query 1 MKAGELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAF 60 MKAGELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAF Sbjct 40 MKAGELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAF 99 Query 61 TARTHATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV 98 TARTHATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV Sbjct 100 TARTHATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV 137 >gi|340626960|ref|YP_004745412.1| hypothetical protein MCAN_19671 [Mycobacterium canettii CIPT 140010059] gi|340005150|emb|CCC44299.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=98 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 94/98 (96%), Positives = 94/98 (96%), Gaps = 0/98 (0%) Query 1 MKAGELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAF 60 MKAGELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAF Sbjct 1 MKAGELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAF 60 Query 61 TARTHATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV 98 TARTHATASAVEAAAAEYANNEAAAA EMA VP RLV Sbjct 61 TARTHATASAVEAAAAEYANNEAAAATEMATVPHLRLV 98 >gi|240172764|ref|ZP_04751423.1| hypothetical protein MkanA1_25842 [Mycobacterium kansasii ATCC 12478] Length=202 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 58/98 (60%), Positives = 68/98 (70%), Gaps = 1/98 (1%) Query 1 MKAGELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAF 60 M+ GELRV++ Q+ A+ASQW ST SVLA P G+P QPTTAAVGGAH AVGLA Sbjct 106 METGELRVDVYQLRASASQWRELSTRFSVLASPTPGRPCQPTTAAVGGAHTAVGLAAEVL 165 Query 61 TARTHATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV 98 T RT AT AV+A A Y +NE AA EMAAV + R+V Sbjct 166 TIRTQATTGAVKAGAEGYGSNEVTAAGEMAAV-RPRMV 202 >gi|183980509|ref|YP_001848800.1| hypothetical protein MMAR_0480 [Mycobacterium marinum M] gi|183173835|gb|ACC38945.1| conserved hypothetical protein [Mycobacterium marinum M] Length=97 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/98 (60%), Positives = 66/98 (68%), Gaps = 1/98 (1%) Query 1 MKAGELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAF 60 M+ G+LRV + Q+ ATA +WS RS L+ L PP GQPFQPTTAAV AH AVGLA AA Sbjct 1 MQPGQLRVEVPQLEATAGEWSQRSATLAALTPPSPGQPFQPTTAAVSSAHTAVGLAAAAL 60 Query 61 TARTHATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV 98 T T T AVE+ A YA NE + AEMAAV Q RLV Sbjct 61 TTHTQETIVAVESGATRYATNETTSPAEMAAV-QPRLV 97 >gi|240173426|ref|ZP_04752084.1| hypothetical protein MkanA1_29196 [Mycobacterium kansasii ATCC 12478] Length=97 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/82 (64%), Positives = 61/82 (75%), Gaps = 0/82 (0%) Query 1 MKAGELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAF 60 M+ G+LR+++ Q+ ASQW RS EL+VLAPP LGQPFQ TTAAV GAHAAV A AA Sbjct 1 MERGQLRIDVPQLEGVASQWGQRSLELAVLAPPSLGQPFQRTTAAVRGAHAAVEFAAAAL 60 Query 61 TARTHATASAVEAAAAEYANNE 82 ART ATAS V+A A YA+NE Sbjct 61 LARTQATASTVQAGATGYASNE 82 >gi|118466069|ref|YP_882823.1| hypothetical protein MAV_3646 [Mycobacterium avium 104] gi|118167356|gb|ABK68253.1| conserved hypothetical protein [Mycobacterium avium 104] Length=100 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/100 (52%), Positives = 68/100 (68%), Gaps = 2/100 (2%) Query 1 MKAG--ELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVA 58 M+ G EL+V + Q+ A A QW G S +L+ +APP GQPFQ TTAAV G +AA+ +A A Sbjct 1 MQVGSDELQVVLDQLRAAAGQWQGLSAQLAEVAPPSPGQPFQATTAAVSGVNAAIAVARA 60 Query 59 AFTARTHATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV 98 AF +R A A+ V +AAA+YAN EA A EMAAV + +V Sbjct 61 AFASRIQAEAARVTSAAADYANQEATGAGEMAAVTRVAVV 100 >gi|183984078|ref|YP_001852369.1| hypothetical protein MMAR_4107 [Mycobacterium marinum M] gi|183177404|gb|ACC42514.1| conserved hypothetical protein [Mycobacterium marinum M] Length=98 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 49/93 (53%), Positives = 63/93 (68%), Gaps = 1/93 (1%) Query 6 LRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAFTARTH 65 L+V ++AATA+QWS S++L V PP GQPFQ TTAA+ +AA+ +A AAFTART Sbjct 7 LQVVPAELAATAAQWSALSSQL-VGTPPTSGQPFQATTAAMNAVNAAIDVAAAAFTARTQ 65 Query 66 ATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV 98 TAS V AA+ Y EAA+AAEM A+ +V Sbjct 66 TTASGVTAASGGYTAQEAASAAEMGAITGVTVV 98 >gi|118616852|ref|YP_905184.1| hypothetical protein MUL_1131 [Mycobacterium ulcerans Agy99] gi|118568962|gb|ABL03713.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=118 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/59 (58%), Positives = 42/59 (72%), Gaps = 0/59 (0%) Query 1 MKAGELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAA 59 M+ G+LRV + Q+ ATA +WS RS L+ L P GQPFQPTTAAV AH AVGLA ++ Sbjct 1 MQPGQLRVEVPQLEATAGEWSQRSATLAALTLPSPGQPFQPTTAAVSSAHTAVGLARSS 59 >gi|254774329|ref|ZP_05215845.1| hypothetical protein MaviaA2_06630 [Mycobacterium avium subsp. avium ATCC 25291] Length=97 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/98 (40%), Positives = 54/98 (56%), Gaps = 1/98 (1%) Query 1 MKAGELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAF 60 M L+V ++ ATA+QW S++ + APP G F+ TTAAV +AA+G A+F Sbjct 1 MGQDSLQVVPAELVATAAQWQALSSQF-IGAPPSPGLSFEATTAAVNALNAAIGATAASF 59 Query 61 TARTHATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV 98 ART T V A+ Y + EA +AA M V R+V Sbjct 60 VARTQETVGGVTTASGGYLSQEATSAAAMNDVTNVRVV 97 >gi|41408569|ref|NP_961405.1| hypothetical protein MAP2471 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396927|gb|AAS04788.1| hypothetical protein MAP_2471 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336460918|gb|EGO39801.1| hypothetical protein MAPs_35840 [Mycobacterium avium subsp. paratuberculosis S397] Length=97 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/98 (40%), Positives = 54/98 (56%), Gaps = 1/98 (1%) Query 1 MKAGELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAF 60 M L+V ++ ATA+QW S++ + APP G F+ TTAAV +AA+G A+F Sbjct 1 MGQDSLQVVPAELVATAAQWQALSSQF-IGAPPSPGPSFEATTAAVNALNAAIGATAASF 59 Query 61 TARTHATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV 98 ART T V A+ Y + EA +AA M V R+V Sbjct 60 VARTQETVGGVTTASGGYLSQEATSAAAMNDVTNVRVV 97 >gi|296170641|ref|ZP_06852216.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894630|gb|EFG74364.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=96 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/88 (40%), Positives = 48/88 (55%), Gaps = 0/88 (0%) Query 5 ELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAFTART 64 +LRV + V + +W + EL PP LG QP++ AV HAAVGLA + R Sbjct 3 QLRVAVPAVQLMSVRWRAQVDELVAAVPPALGLACQPSSGAVRAGHAAVGLAATSLMGRM 62 Query 65 HATASAVEAAAAEYANNEAAAAAEMAAV 92 +A+ V AA + YA NE +AAE A+ Sbjct 63 RDSAAKVAAANSGYAANETNSAAEFVAI 90 >gi|118465025|ref|YP_880721.1| hypothetical protein MAV_1480 [Mycobacterium avium 104] gi|118465919|ref|YP_880693.1| hypothetical protein MAV_1451 [Mycobacterium avium 104] gi|118166312|gb|ABK67209.1| conserved hypothetical protein [Mycobacterium avium 104] gi|118167206|gb|ABK68103.1| conserved hypothetical protein [Mycobacterium avium 104] Length=97 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/98 (39%), Positives = 53/98 (55%), Gaps = 1/98 (1%) Query 1 MKAGELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAF 60 M L+V ++ ATA+QW S++ + APP G F+ TTAAV +AA+ A+F Sbjct 1 MGQDSLQVVPAELVATAAQWQALSSQF-IGAPPSPGPSFEATTAAVNALNAAIAATTASF 59 Query 61 TARTHATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV 98 ART T V A+ Y + EA +AA M V R+V Sbjct 60 VARTQETVGGVTTASGGYLSQEATSAAAMNDVTNVRVV 97 >gi|342858516|ref|ZP_08715171.1| hypothetical protein MCOL_06561 [Mycobacterium colombiense CECT 3035] gi|342134220|gb|EGT87400.1| hypothetical protein MCOL_06561 [Mycobacterium colombiense CECT 3035] Length=97 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/98 (43%), Positives = 58/98 (60%), Gaps = 1/98 (1%) Query 1 MKAGELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAF 60 M L+V ++AA A QW +++L+ + P P GQPFQ TTAAV +AA+G+ A+F Sbjct 1 MGQDSLQVVPAELAAIAGQWGALTSQLAGVPPVP-GQPFQATTAAVNAVNAAIGVTAASF 59 Query 61 TARTHATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV 98 ART T V AA Y EA +AA++AAV +V Sbjct 60 AARTQETVGGVTQAAGGYTAQEATSAADIAAVTGVTVV 97 >gi|183980151|ref|YP_001848442.1| hypothetical protein MMAR_0117 [Mycobacterium marinum M] gi|183173477|gb|ACC38587.1| conserved hypothetical protein [Mycobacterium marinum M] Length=156 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 53/97 (55%), Positives = 61/97 (63%), Gaps = 1/97 (1%) Query 3 AGELRVNIQQVAATASQWSGRSTELSVLAPPPL-GQPFQPTTAAVGGAHAAVGLAVAAFT 61 + EL V + Q+ TASQW +L+ A PP GQPFQ T AAV G AA+G A Sbjct 60 SDELHVKLGQLGVTASQWQDLRAQLAAGATPPAPGQPFQATAAAVSGIGAAIGGTGVALA 119 Query 62 ARTHATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV 98 RT ATA+AV AAAA YAN EA AA EMAAV Q R+V Sbjct 120 TRTQATAAAVTAAAASYANQEATAAGEMAAVTQVRVV 156 >gi|15841567|ref|NP_336604.1| hypothetical protein MT2138 [Mycobacterium tuberculosis CDC1551] gi|31793260|ref|NP_855753.1| hypothetical protein Mb2103c [Mycobacterium bovis AF2122/97] gi|57116940|ref|YP_177658.1| hypothetical protein Rv2077A [Mycobacterium tuberculosis H37Rv] 68 more sequence titles Length=99 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/99 (51%), Positives = 62/99 (63%), Gaps = 1/99 (1%) Query 1 MKAGELRVNIQQVAATASQWSGRSTELSVLA-PPPLGQPFQPTTAAVGGAHAAVGLAVAA 59 M + EL+V + Q+ ASQ G + + A PP GQPFQ TT AV G +AA+ A A Sbjct 1 MGSNELQVVLGQLEVAASQSQGLGAQFAASATPPESGQPFQATTVAVSGINAAICCAAAE 60 Query 60 FTARTHATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV 98 F RT ATA+ V AAAA YA+ EA AA+EMAAV Q +V Sbjct 61 FATRTQATATGVAAAAAAYAHQEATAASEMAAVTQVTVV 99 >gi|118463827|ref|YP_879970.1| hypothetical protein MAV_0691 [Mycobacterium avium 104] gi|118165114|gb|ABK66011.1| conserved hypothetical protein [Mycobacterium avium 104] Length=70 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/68 (50%), Positives = 42/68 (62%), Gaps = 0/68 (0%) Query 31 APPPLGQPFQPTTAAVGGAHAAVGLAVAAFTARTHATASAVEAAAAEYANNEAAAAAEMA 90 APP GQ FQ TTAAV +AA+G+A A+FTART AT V AA Y EA AA +M+ Sbjct 3 APPAPGQSFQATTAAVNAVNAAIGVAAASFTARTQATVGGVTQAAGGYTAQEATAAGQMS 62 Query 91 AVPQTRLV 98 + +V Sbjct 63 NITGVTVV 70 >gi|183984031|ref|YP_001852322.1| hypothetical protein MMAR_4060 [Mycobacterium marinum M] gi|183177357|gb|ACC42467.1| conserved hypothetical secreted protein [Mycobacterium marinum M] Length=99 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 48/89 (54%), Positives = 57/89 (65%), Gaps = 1/89 (1%) Query 11 QQVAATASQWSGRSTELSVLAPPPL-GQPFQPTTAAVGGAHAAVGLAVAAFTARTHATAS 69 Q+ TASQ G +L+ A PP G PFQ TTAAV G +A+G A RT ATA+ Sbjct 11 DQLGVTASQRRGLGAQLTRGAAPPAPGHPFQATTAAVSGIDSAIGATATALATRTQATAA 70 Query 70 AVEAAAAEYANNEAAAAAEMAAVPQTRLV 98 AV AAAA YAN EA+AA EMAAV Q ++V Sbjct 71 AVAAAAARYANQEASAADEMAAVAQLKVV 99 >gi|296164509|ref|ZP_06847080.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900109|gb|EFG79544.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=99 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 50/95 (53%), Gaps = 3/95 (3%) Query 6 LRVNIQQVAATASQWSGRSTELSVLAPPP-LGQPFQPTTAAVGGAHAAVGLAVAAFTART 64 LRVN + A A++W +L + AP LG Q + AAV AH V +AA +A+ Sbjct 5 LRVNSAALQAMATRWGAWVGDLHLSAPSAALGLSCQASAAAVLTAHIEVDAFMAALSAQV 64 Query 65 HATASAVEAAAAEYANNEAAAAAEMAAV--PQTRL 97 A A+ V A + Y E A+A E AAV PQ RL Sbjct 65 RARAAHVTEADSRYNATEVASAQEEAAVVPPQIRL 99 >gi|41407316|ref|NP_960152.1| hypothetical protein MAP1218c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395668|gb|AAS03535.1| hypothetical protein MAP_1218c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336458046|gb|EGO37033.1| hypothetical protein MAPs_17440 [Mycobacterium avium subsp. paratuberculosis S397] Length=97 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/89 (36%), Positives = 46/89 (52%), Gaps = 0/89 (0%) Query 4 GELRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAFTAR 63 L V ++ + +W + L V PPP G +QP+ AV AHAAV +A + R Sbjct 2 DRLEVTSAELRMLSGKWHTNAARLRVATPPPSGMSYQPSAVAVDAAHAAVEVAANSLIGR 61 Query 64 THATASAVEAAAAEYANNEAAAAAEMAAV 92 TA+ V AA Y NEA +A +M+A+ Sbjct 62 MIETATKVAAADFSYTANEADSADKMSAI 90 >gi|183983551|ref|YP_001851842.1| hypothetical protein MMAR_3571 [Mycobacterium marinum M] gi|183176877|gb|ACC41987.1| conserved hypothetical protein [Mycobacterium marinum M] Length=97 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 36/87 (42%), Positives = 50/87 (58%), Gaps = 0/87 (0%) Query 6 LRVNIQQVAATASQWSGRSTELSVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAFTARTH 65 LR + + TA +W +S L V P G P Q + AAV AHAA+ +A A+ T R Sbjct 4 LRAATEDIRLTARRWHTQSAALGVDPPRSAGLPCQSSAAAVNAAHAAITIAAASLTGRVQ 63 Query 66 ATASAVEAAAAEYANNEAAAAAEMAAV 92 A+A+ V A+ Y NEA +AA++AAV Sbjct 64 ASATKVAQASTGYRANEAKSAAQIAAV 90 >gi|118467080|ref|YP_881457.1| hypothetical protein MAV_2253 [Mycobacterium avium 104] gi|118168367|gb|ABK69264.1| hypothetical protein MAV_2253 [Mycobacterium avium 104] Length=53 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/49 (47%), Positives = 31/49 (64%), Gaps = 0/49 (0%) Query 50 HAAVGLAVAAFTARTHATASAVEAAAAEYANNEAAAAAEMAAVPQTRLV 98 +AA+G+ AAFTART T V AAA Y EA +AA++AA+ +V Sbjct 5 NAAIGVTAAAFTARTQETVGGVTAAAGGYTAQEATSAADIAAITGVTVV 53 >gi|183980512|ref|YP_001848803.1| hypothetical protein MMAR_0483 [Mycobacterium marinum M] gi|183173838|gb|ACC38948.1| conserved hypothetical alanine rich protein [Mycobacterium marinum M] Length=108 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 33/89 (38%), Positives = 44/89 (50%), Gaps = 1/89 (1%) Query 5 ELRVNIQQVAATASQWSGRSTEL-SVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAFTAR 63 LRV+ V A A +W + EL S+ AP LG Q + AAV AH V + Sbjct 13 SLRVDTAGVQAMAWRWGIAAGELTSMDAPAGLGLSCQLSAAAVDAAHGEVAAFTTGLAIQ 72 Query 64 THATASAVEAAAAEYANNEAAAAAEMAAV 92 +A + V A + Y NEAA+A +AAV Sbjct 73 VNARTAGVTQADSGYLANEAASADVLAAV 101 >gi|118616855|ref|YP_905187.1| hypothetical protein MUL_1134 [Mycobacterium ulcerans Agy99] gi|118568965|gb|ABL03716.1| conserved hypothetical alanine rich protein [Mycobacterium ulcerans Agy99] Length=95 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 31/88 (36%), Positives = 43/88 (49%), Gaps = 1/88 (1%) Query 6 LRVNIQQVAATASQWSGRSTEL-SVLAPPPLGQPFQPTTAAVGGAHAAVGLAVAAFTART 64 +RV+ V A A +W + EL S+ AP LG Q + AAV AH V + Sbjct 1 MRVDTAGVQAMAWRWGIAAGELTSMDAPAGLGLSCQLSAAAVDAAHGEVAAFTTGLAIQV 60 Query 65 HATASAVEAAAAEYANNEAAAAAEMAAV 92 +A + V A + Y NEA +A +AAV Sbjct 61 NARTAGVTQADSGYLANEAVSADVLAAV 88 Lambda K H 0.311 0.118 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130183417542 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40