BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1952
Length=71
Score E
Sequences producing significant alignments: (Bits) Value
gi|15841423|ref|NP_336460.1| hypothetical protein MT2002 [Mycoba... 140 7e-32
gi|15609089|ref|NP_216468.1| hypothetical protein Rv1952 [Mycoba... 138 2e-31
gi|319951277|ref|ZP_08025112.1| hypothetical protein ES5_16557 [... 78.6 3e-13
gi|41406949|ref|NP_959785.1| hypothetical protein MAP0851 [Mycob... 46.2 0.002
gi|88811417|ref|ZP_01126672.1| plasmid stabilization protein [Ni... 46.2 0.002
gi|162149112|ref|YP_001603573.1| hypothetical protein GDI_3342 [... 43.9 0.009
gi|297570914|ref|YP_003696688.1| hypothetical protein Arch_0311 ... 43.5 0.011
gi|256389842|ref|YP_003111406.1| hypothetical protein Caci_0629 ... 43.1 0.012
gi|237654673|ref|YP_002890987.1| resolvase [Thauera sp. MZ1T] >g... 43.1 0.012
gi|329912128|ref|ZP_08275686.1| plasmid stability protein StbC [... 42.4 0.023
gi|332283497|ref|YP_004415408.1| plasmid stability protein StbC ... 42.0 0.027
gi|218667301|ref|YP_002425796.1| plasmid stability protein, puta... 42.0 0.032
gi|94267944|ref|ZP_01291039.1| plasmid stabilization protein [de... 41.6 0.036
gi|78061745|ref|YP_371653.1| plasmid stability protein-like [Bur... 41.6 0.039
gi|94265482|ref|ZP_01289232.1| Plasmid stability protein-like [d... 41.6 0.044
gi|344200496|ref|YP_004784822.1| Arc domain-/DNA-binding domain-... 41.2 0.048
gi|91778229|ref|YP_553437.1| plasmid stability protein [Burkhold... 40.8 0.060
gi|298489561|ref|ZP_07007566.1| Putative plasmid stability prote... 40.8 0.061
gi|336176703|ref|YP_004582078.1| hypothetical protein FsymDg_063... 40.8 0.067
gi|171061002|ref|YP_001793351.1| plasmid stability protein StbC ... 40.8 0.071
gi|161520345|ref|YP_001583772.1| Arc domain-containing protein [... 40.8 0.075
gi|221195929|ref|ZP_03568976.1| putative plasmid stability prote... 40.4 0.076
gi|288940916|ref|YP_003443156.1| resolvase domain-containing pro... 40.4 0.094
gi|198283572|ref|YP_002219893.1| plasmid stability protein-like ... 40.4 0.095
gi|124515558|gb|EAY57068.1| probable plasmid stability protein [... 40.0 0.11
gi|288963093|ref|YP_003453372.1| hypothetical protein AZL_f00680... 40.0 0.11
gi|16265087|ref|NP_437879.1| plasmid stability protein [Sinorhiz... 40.0 0.11
gi|325168709|ref|YP_004280499.1| plasmid stability protein [Agro... 40.0 0.12
gi|254425613|ref|ZP_05039330.1| hypothetical protein S7335_179 [... 39.7 0.13
gi|300115003|ref|YP_003761578.1| Arc domain-/DNA-binding domain-... 39.7 0.14
gi|241554310|ref|YP_002979523.1| putative plasmid stability prot... 39.7 0.14
gi|254250235|ref|ZP_04943555.1| Plasmid stability protein-like [... 39.7 0.14
gi|221209650|ref|ZP_03582631.1| plasmid stability protein StbC [... 39.7 0.15
gi|209542182|ref|YP_002278363.1| hypothetical protein Gdia_3576 ... 39.7 0.15
gi|91977605|ref|YP_570264.1| plasmid stabilization protein [Rhod... 39.7 0.16
gi|336037183|gb|AEH83113.1| putative plasmid stability protein [... 39.3 0.17
gi|170696640|ref|ZP_02887759.1| plasmid stability protein [Burkh... 39.3 0.18
gi|160901273|ref|YP_001566855.1| plasmid stability protein StbC ... 39.3 0.18
gi|148243706|ref|YP_001219946.1| hypothetical protein Acry_3181 ... 39.3 0.19
gi|148258883|ref|YP_001243468.1| plasmid stability protein [Brad... 39.3 0.19
gi|56750012|ref|YP_170713.1| panthotenate metabolism flavoprotei... 39.3 0.19
gi|81300353|ref|YP_400561.1| panthotenate metabolism flavoprotei... 39.3 0.20
gi|15838191|ref|NP_298879.1| plasmid stabilization protein [Xyle... 39.3 0.20
gi|300311537|ref|YP_003775629.1| plasmid stabilization protein [... 39.3 0.22
gi|71276693|ref|ZP_00652963.1| plasmid stabilization protein [Xy... 38.9 0.22
gi|170700739|ref|ZP_02891733.1| plasmid stability protein-like p... 38.9 0.22
gi|241113035|ref|YP_002972870.1| hypothetical protein Rleg_4675 ... 38.9 0.23
gi|92113197|ref|YP_573125.1| hypothetical protein Csal_1069 [Chr... 38.9 0.23
gi|91789860|ref|YP_550812.1| hypothetical protein Bpro_4020 [Pol... 38.9 0.23
gi|116248808|ref|YP_764649.1| putative plasmid stability protein... 38.9 0.24
>gi|15841423|ref|NP_336460.1| hypothetical protein MT2002 [Mycobacterium tuberculosis CDC1551]
gi|167970532|ref|ZP_02552809.1| hypothetical protein MtubH3_21863 [Mycobacterium tuberculosis
H37Ra]
gi|254550971|ref|ZP_05141418.1| hypothetical protein Mtube_11001 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
34 more sequence titles
Length=75
Score = 140 bits (352), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/71 (100%), Positives = 71/71 (100%), Gaps = 0/71 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEEVPMPVLLAADSGHDIDFEPE 60
VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEEVPMPVLLAADSGHDIDFEPE
Sbjct 5 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEEVPMPVLLAADSGHDIDFEPE 64
Query 61 RLGLIARTPQL 71
RLGLIARTPQL
Sbjct 65 RLGLIARTPQL 75
>gi|15609089|ref|NP_216468.1| hypothetical protein Rv1952 [Mycobacterium tuberculosis H37Rv]
gi|31793144|ref|NP_855637.1| hypothetical protein Mb1987 [Mycobacterium bovis AF2122/97]
gi|121637857|ref|YP_978080.1| hypothetical protein BCG_1991 [Mycobacterium bovis BCG str. Pasteur
1173P2]
38 more sequence titles
Length=71
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/71 (99%), Positives = 71/71 (100%), Gaps = 0/71 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEEVPMPVLLAADSGHDIDFEPE 60
+IRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEEVPMPVLLAADSGHDIDFEPE
Sbjct 1 MIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEEVPMPVLLAADSGHDIDFEPE 60
Query 61 RLGLIARTPQL 71
RLGLIARTPQL
Sbjct 61 RLGLIARTPQL 71
>gi|319951277|ref|ZP_08025112.1| hypothetical protein ES5_16557 [Dietzia cinnamea P4]
gi|319435050|gb|EFV90335.1| hypothetical protein ES5_16557 [Dietzia cinnamea P4]
Length=76
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/71 (58%), Positives = 47/71 (67%), Gaps = 0/71 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEEVPMPVLLAADSGHDIDFEPE 60
++RNLPEGTKAALR RA RH SVEAE R I+ L + LLA D G DI+FEP
Sbjct 6 LVRNLPEGTKAALRARAERHRRSVEAETREIIAEALAENPTTLVDLLAGDEGADIEFEPG 65
Query 61 RLGLIARTPQL 71
RLGL R P+L
Sbjct 66 RLGLTGRDPEL 76
>gi|41406949|ref|NP_959785.1| hypothetical protein MAP0851 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395299|gb|AAS03168.1| hypothetical protein MAP_0851 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336461301|gb|EGO40174.1| hypothetical protein MAPs_32150 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=281
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/28 (68%), Positives = 25/28 (90%), Gaps = 0/28 (0%)
Query 39 EEVPMPVLLAADSGHDIDFEPERLGLIA 66
E++PM LLAA+SGHD+DF+PERLG +A
Sbjct 218 EDIPMSELLAAESGHDVDFDPERLGELA 245
>gi|88811417|ref|ZP_01126672.1| plasmid stabilization protein [Nitrococcus mobilis Nb-231]
gi|88791306|gb|EAR22418.1| plasmid stabilization protein [Nitrococcus mobilis Nb-231]
Length=84
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/66 (47%), Positives = 36/66 (55%), Gaps = 2/66 (3%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGE-EVPMPVLLAADSGHDIDFEP 59
+RNLP ALRVRAARH HS+EAE RAIL A + E V + LL AD G
Sbjct 5 TVRNLPNEVHRALRVRAARHGHSMEAEVRAILEAAVTPEGRVKLGSLL-ADIGRRTKLTD 63
Query 60 ERLGLI 65
E +
Sbjct 64 EEFAVF 69
>gi|162149112|ref|YP_001603573.1| hypothetical protein GDI_3342 [Gluconacetobacter diazotrophicus
PAl 5]
gi|209545144|ref|YP_002277373.1| hypothetical protein Gdia_3028 [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787689|emb|CAP57285.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209532821|gb|ACI52758.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
Length=84
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/34 (71%), Positives = 25/34 (74%), Gaps = 0/34 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTA 34
VIRNLPE T AL+ RAA H HS EAE RAIL A
Sbjct 5 VIRNLPEETHRALKARAALHGHSTEAEIRAILEA 38
>gi|297570914|ref|YP_003696688.1| hypothetical protein Arch_0311 [Arcanobacterium haemolyticum
DSM 20595]
gi|296931261|gb|ADH92069.1| conserved hypothetical protein [Arcanobacterium haemolyticum
DSM 20595]
Length=78
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/70 (43%), Positives = 39/70 (56%), Gaps = 3/70 (4%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEEVPMPVLLAA---DSGHDIDF 57
+IR+LP GTK AL+ AA S+EAEARAIL + L + + LA D D F
Sbjct 5 LIRDLPTGTKQALKNLAAHKGTSMEAEARAILRSALNAKSRSICEALAQKEPDLSEDFIF 64
Query 58 EPERLGLIAR 67
+P R G+ R
Sbjct 65 DPGRNGVGMR 74
>gi|256389842|ref|YP_003111406.1| hypothetical protein Caci_0629 [Catenulispora acidiphila DSM
44928]
gi|256356068|gb|ACU69565.1| conserved hypothetical protein [Catenulispora acidiphila DSM
44928]
Length=79
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/32 (66%), Positives = 25/32 (79%), Gaps = 0/32 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAIL 32
V+RNL EG K LRVRAA+H S+EAE R+IL
Sbjct 5 VVRNLDEGVKQRLRVRAAKHGRSMEAEVRSIL 36
>gi|237654673|ref|YP_002890987.1| resolvase [Thauera sp. MZ1T]
gi|237625920|gb|ACR02610.1| Resolvase domain protein [Thauera sp. MZ1T]
Length=89
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/45 (52%), Positives = 29/45 (65%), Gaps = 0/45 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEEVPMPV 45
IRN+ + TKAALR+RAA+H S+E EAR IL L P P+
Sbjct 11 TIRNVDDATKAALRIRAAQHGVSMEEEARRILREALSRTSTPSPL 55
>gi|329912128|ref|ZP_08275686.1| plasmid stability protein StbC [Oxalobacteraceae bacterium IMCC9480]
gi|327545690|gb|EGF30836.1| plasmid stability protein StbC [Oxalobacteraceae bacterium IMCC9480]
Length=79
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/65 (48%), Positives = 38/65 (59%), Gaps = 5/65 (7%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGE-EVPMPVLLAADSGHD---ID 56
+RNLP+ T ALR RAA H S EAE RAIL + + E + + LL AD G + ID
Sbjct 5 TVRNLPDETHRALRARAATHGRSTEAEIRAILESAVRPEGRIKLGTLL-ADIGREVGGID 63
Query 57 FEPER 61
E ER
Sbjct 64 LEIER 68
>gi|332283497|ref|YP_004415408.1| plasmid stability protein StbC [Pusillimonas sp. T7-7]
gi|330427450|gb|AEC18784.1| plasmid stability protein StbC [Pusillimonas sp. T7-7]
Length=85
Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/74 (45%), Positives = 43/74 (59%), Gaps = 5/74 (6%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAIL-TAGLLGEEVPMPVLLAA---DSGHDID 56
+RNLP+ ALRVRAA H HS+EAE R IL A + + + LLA+ ++G D
Sbjct 5 TVRNLPDEVHRALRVRAAHHGHSIEAEIREILEIAARPPKRIKLGSLLASIAREAGGLTD 64
Query 57 FEPERLG-LIARTP 69
E ERL L +TP
Sbjct 65 AEAERLNELRDKTP 78
>gi|218667301|ref|YP_002425796.1| plasmid stability protein, putative [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|218519514|gb|ACK80100.1| plasmid stability protein, putative [Acidithiobacillus ferrooxidans
ATCC 23270]
Length=97
Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/36 (56%), Positives = 26/36 (73%), Gaps = 0/36 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGL 36
IRNL +G K+ LR++AARH HS+E E R+IL L
Sbjct 20 TIRNLDDGLKSMLRMQAARHGHSMEEEVRSILRQAL 55
>gi|94267944|ref|ZP_01291039.1| plasmid stabilization protein [delta proteobacterium MLMS-1]
gi|94268277|ref|ZP_01291128.1| plasmid stabilization protein [delta proteobacterium MLMS-1]
gi|93451677|gb|EAT02458.1| plasmid stabilization protein [delta proteobacterium MLMS-1]
gi|93451789|gb|EAT02544.1| plasmid stabilization protein [delta proteobacterium MLMS-1]
Length=84
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/48 (55%), Positives = 32/48 (67%), Gaps = 1/48 (2%)
Query 2 IRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGE-EVPMPVLLA 48
+RNLP+ +LRVRAA H HS+EAE RAIL A + E V + LLA
Sbjct 6 VRNLPDEIHRSLRVRAALHGHSMEAEVRAILEAAVAPEGRVKLGSLLA 53
>gi|78061745|ref|YP_371653.1| plasmid stability protein-like [Burkholderia sp. 383]
gi|77969630|gb|ABB11009.1| Plasmid stability protein-like protein [Burkholderia sp. 383]
Length=91
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/63 (42%), Positives = 36/63 (58%), Gaps = 3/63 (4%)
Query 2 IRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLL-GEEVPMPVLLA--ADSGHDIDFE 58
+RNLP+ ALR+RAA+H S EAE R IL +L G + + LLA +DF+
Sbjct 18 VRNLPDEVHRALRIRAAQHGRSTEAEVRNILEQAVLPGGRLKLGTLLAEIGREAGGVDFD 77
Query 59 PER 61
+R
Sbjct 78 VQR 80
>gi|94265482|ref|ZP_01289232.1| Plasmid stability protein-like [delta proteobacterium MLMS-1]
gi|93454024|gb|EAT04365.1| Plasmid stability protein-like [delta proteobacterium MLMS-1]
Length=179
Score = 41.6 bits (96), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/49 (54%), Positives = 32/49 (66%), Gaps = 1/49 (2%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGE-EVPMPVLLA 48
+RNLP+ +LRVRAA H HS+EAE RAIL A + E V + LLA
Sbjct 100 TVRNLPDEIHRSLRVRAALHGHSMEAEVRAILEAAVAPEGRVKLGSLLA 148
>gi|344200496|ref|YP_004784822.1| Arc domain-/DNA-binding domain-containing protein [Acidithiobacillus
ferrivorans SS3]
gi|343775940|gb|AEM48496.1| Arc domain-/DNA-binding domain-containing protein [Acidithiobacillus
ferrivorans SS3]
Length=82
Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/32 (63%), Positives = 24/32 (75%), Gaps = 0/32 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAIL 32
IRNLPE + ALR+RAA+H S EAE R+IL
Sbjct 3 TIRNLPEEVRRALRMRAAQHGRSTEAEVRSIL 34
>gi|91778229|ref|YP_553437.1| plasmid stability protein [Burkholderia xenovorans LB400]
gi|91690889|gb|ABE34087.1| Plasmid stability protein [Burkholderia xenovorans LB400]
Length=83
Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/41 (57%), Positives = 27/41 (66%), Gaps = 0/41 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEEV 41
IRNL E KA LRV+AA+H S+E EAR IL A L E +
Sbjct 5 TIRNLDEQLKARLRVQAAQHGRSMEDEARDILRAALSTESI 45
>gi|298489561|ref|ZP_07007566.1| Putative plasmid stability protein y4jJ [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|298155922|gb|EFH97037.1| Putative plasmid stability protein y4jJ [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|320326818|gb|EFW82855.1| Putative plasmid stabilization protein [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330882618|gb|EGH16767.1| Putative plasmid stabilization protein [Pseudomonas syringae
pv. glycinea str. race 4]
Length=84
Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/32 (63%), Positives = 23/32 (72%), Gaps = 0/32 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAIL 32
+RNLP+ ALRVRAA+H HS EAE R IL
Sbjct 5 TVRNLPDDVHRALRVRAAQHGHSTEAEVREIL 36
>gi|336176703|ref|YP_004582078.1| hypothetical protein FsymDg_0631 [Frankia symbiont of Datisca
glomerata]
gi|334857683|gb|AEH08157.1| hypothetical protein FsymDg_0631 [Frankia symbiont of Datisca
glomerata]
Length=82
Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/38 (61%), Positives = 27/38 (72%), Gaps = 0/38 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLG 38
IR+L + KA LRVRAA + S+EAEARAIL A L G
Sbjct 5 TIRDLDDEVKARLRVRAAHNGRSMEAEARAILRAALTG 42
>gi|171061002|ref|YP_001793351.1| plasmid stability protein StbC [Leptothrix cholodnii SP-6]
gi|170778447|gb|ACB36586.1| plasmid stability protein StbC [Leptothrix cholodnii SP-6]
Length=84
Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/66 (40%), Positives = 36/66 (55%), Gaps = 2/66 (3%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGE-EVPMPVLLAADSGHDIDFEP 59
+RNLP+ ALRVRAA+H HS+E+E R IL + + + V + LL AD G
Sbjct 5 TVRNLPDEVHRALRVRAAQHGHSMESEVREILESAVSPQGRVKLGTLL-ADMGRQARLSD 63
Query 60 ERLGLI 65
E +
Sbjct 64 EEFAVF 69
>gi|161520345|ref|YP_001583772.1| Arc domain-containing protein [Burkholderia multivorans ATCC
17616]
gi|189353478|ref|YP_001949105.1| plasmid stability protein-like protein [Burkholderia multivorans
ATCC 17616]
gi|160344395|gb|ABX17480.1| Arc domain protein DNA binding domain protein [Burkholderia multivorans
ATCC 17616]
gi|189337500|dbj|BAG46569.1| plasmid stability protein-like protein [Burkholderia multivorans
ATCC 17616]
Length=79
Score = 40.8 bits (94), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/66 (43%), Positives = 36/66 (55%), Gaps = 5/66 (7%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGE-EVPMPVLLA----ADSGHDI 55
+RNLP+ ALRVRAA H S EAE R IL +L E V + LLA G D+
Sbjct 5 TVRNLPDEVHRALRVRAALHGRSTEAEVRDILEQAVLSEGRVKLGTLLAEIGREAGGVDL 64
Query 56 DFEPER 61
D + ++
Sbjct 65 DIQRDK 70
>gi|221195929|ref|ZP_03568976.1| putative plasmid stability protein [Burkholderia multivorans
CGD2M]
gi|221202602|ref|ZP_03575621.1| putative plasmid stability protein [Burkholderia multivorans
CGD2]
gi|221176536|gb|EEE08964.1| putative plasmid stability protein [Burkholderia multivorans
CGD2]
gi|221182483|gb|EEE14883.1| putative plasmid stability protein [Burkholderia multivorans
CGD2M]
Length=79
Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/65 (44%), Positives = 36/65 (56%), Gaps = 5/65 (7%)
Query 2 IRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGE-EVPMPVLLA----ADSGHDID 56
+RNLP+ ALRVRAA H S EAE R IL +L E V + LLA G D+D
Sbjct 6 VRNLPDEVHRALRVRAALHGRSTEAEVRDILEQAVLSEGRVKLGTLLAEIGREAGGVDLD 65
Query 57 FEPER 61
+ ++
Sbjct 66 IQRDK 70
>gi|288940916|ref|YP_003443156.1| resolvase domain-containing protein [Allochromatium vinosum DSM
180]
gi|288896288|gb|ADC62124.1| resolvase domain protein [Allochromatium vinosum DSM 180]
Length=80
Score = 40.4 bits (93), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/45 (47%), Positives = 29/45 (65%), Gaps = 0/45 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEEVPMPV 45
IRNL E K+A+RVRAA+H S+E EAR +L + P+P+
Sbjct 5 TIRNLDESIKSAIRVRAAQHGISMEEEARRLLREAVSRSSSPVPM 49
>gi|198283572|ref|YP_002219893.1| plasmid stability protein-like protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218665129|ref|YP_002426197.1| plasmid stability protein, putative [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198248093|gb|ACH83686.1| plasmid stability protein-like protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218517342|gb|ACK77928.1| plasmid stability protein, putative [Acidithiobacillus ferrooxidans
ATCC 23270]
Length=84
Score = 40.4 bits (93), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/35 (58%), Positives = 24/35 (69%), Gaps = 0/35 (0%)
Query 2 IRNLPEGTKAALRVRAARHHHSVEAEARAILTAGL 36
+RN+P+ ALRVRAARH S EAE R IL A +
Sbjct 6 VRNVPDDVHRALRVRAARHGRSTEAEVREILAAAV 40
>gi|124515558|gb|EAY57068.1| probable plasmid stability protein [Leptospirillum rubarum]
gi|206601756|gb|EDZ38239.1| Probable plasmid stability protein [Leptospirillum sp. Group
II '5-way CG']
Length=84
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/36 (56%), Positives = 25/36 (70%), Gaps = 0/36 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGL 36
+RNLP+ ALRVRA+ H HS EAE R+IL A +
Sbjct 5 TVRNLPDEVHRALRVRASMHGHSTEAEIRSILEATV 40
>gi|288963093|ref|YP_003453372.1| hypothetical protein AZL_f00680 [Azospirillum sp. B510]
gi|288915345|dbj|BAI76828.1| hypothetical protein AZL_f00680 [Azospirillum sp. B510]
Length=81
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/42 (58%), Positives = 26/42 (62%), Gaps = 0/42 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEEVP 42
IRNL + KA LRVRAA H S+E EAR IL A L E P
Sbjct 5 TIRNLEDPLKARLRVRAAHHGRSMEEEARHILRAALTEERQP 46
>gi|16265087|ref|NP_437879.1| plasmid stability protein [Sinorhizobium meliloti 1021]
gi|15141226|emb|CAC49739.1| putative plasmid stability protein [Sinorhizobium meliloti 1021]
Length=170
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/43 (56%), Positives = 27/43 (63%), Gaps = 1/43 (2%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGL-LGEEVP 42
IRNL +G K LR+RAA H S+E EAR IL A L GE P
Sbjct 5 TIRNLDDGLKKRLRIRAAAHGRSMEDEARDILRAALSTGENRP 47
>gi|325168709|ref|YP_004280499.1| plasmid stability protein [Agrobacterium sp. H13-3]
gi|325064432|gb|ADY68121.1| putative plasmid stability protein [Agrobacterium sp. H13-3]
Length=84
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLL-GEEVPMPVLLAA 49
IRNL E T ALRVRAA H S EAE RAI+ A + E + + LLAA
Sbjct 5 TIRNLSEETHRALRVRAAHHGRSTEAEIRAIIEAAVRPPERIQLGSLLAA 54
>gi|254425613|ref|ZP_05039330.1| hypothetical protein S7335_179 [Synechococcus sp. PCC 7335]
gi|196188036|gb|EDX83001.1| hypothetical protein S7335_179 [Synechococcus sp. PCC 7335]
Length=83
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/61 (40%), Positives = 34/61 (56%), Gaps = 3/61 (4%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLG---EEVPMPVLLAADSGHDIDF 57
++RN+ + AL+ RA+RH SVEAE R IL LL + + + D G+D DF
Sbjct 5 IVRNIDDAIVKALKQRASRHGISVEAEHRKILEQVLLQPARKSFAEVLCMIPDVGNDADF 64
Query 58 E 58
E
Sbjct 65 E 65
>gi|300115003|ref|YP_003761578.1| Arc domain-/DNA-binding domain-containing protein [Nitrosococcus
watsonii C-113]
gi|299540940|gb|ADJ29257.1| Arc domain protein DNA binding domain protein [Nitrosococcus
watsonii C-113]
Length=83
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/32 (66%), Positives = 22/32 (69%), Gaps = 0/32 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAIL 32
+RNLPE ALRVRAA H S EAE RAIL
Sbjct 5 TVRNLPEEVHRALRVRAATHGRSTEAEVRAIL 36
>gi|241554310|ref|YP_002979523.1| putative plasmid stability protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240863616|gb|ACS61278.1| putative plasmid stability protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length=82
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/42 (53%), Positives = 25/42 (60%), Gaps = 0/42 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEEVP 42
IRNL +G K LR+RAA H S+E EAR IL L E P
Sbjct 5 TIRNLDDGLKQRLRMRAATHGRSMEDEARDILRMALATSEPP 46
>gi|254250235|ref|ZP_04943555.1| Plasmid stability protein-like [Burkholderia cenocepacia PC184]
gi|124876736|gb|EAY66726.1| Plasmid stability protein-like [Burkholderia cenocepacia PC184]
Length=91
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/64 (43%), Positives = 34/64 (54%), Gaps = 3/64 (4%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEEVPMPVLLAADSGHD---IDF 57
+RNLP+ ALR+RAA+H S EAE R IL + P L A+ G + IDF
Sbjct 17 TVRNLPDEVHRALRIRAAQHGRSTEAEVRDILEQAVRPGGRPRLGTLLAEIGREAGGIDF 76
Query 58 EPER 61
E R
Sbjct 77 EVRR 80
>gi|221209650|ref|ZP_03582631.1| plasmid stability protein StbC [Burkholderia multivorans CGD1]
gi|221170338|gb|EEE02804.1| plasmid stability protein StbC [Burkholderia multivorans CGD1]
Length=85
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/65 (44%), Positives = 35/65 (54%), Gaps = 5/65 (7%)
Query 2 IRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGE-EVPMPVLLA----ADSGHDID 56
+RNLP ALRVRAA H S EAE R IL +L E V + LLA G D+D
Sbjct 12 VRNLPHEVHRALRVRAALHGRSTEAEVRDILEQAVLSEGRVKLGTLLAEIGREAGGVDLD 71
Query 57 FEPER 61
+ ++
Sbjct 72 IQRDK 76
>gi|209542182|ref|YP_002278363.1| hypothetical protein Gdia_3576 [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533362|gb|ACI53298.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
Length=81
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/62 (42%), Positives = 33/62 (54%), Gaps = 5/62 (8%)
Query 2 IRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEEVPMPVLLAADSGHDIDFEPER 61
IRN+ + K LR+RAA H S+E EAR IL L + V L+ D+G I R
Sbjct 6 IRNIDDNLKQRLRLRAAVHGRSMEEEARVILRTAL-----SVEVSLSVDAGQTIHQRFAR 60
Query 62 LG 63
LG
Sbjct 61 LG 62
>gi|91977605|ref|YP_570264.1| plasmid stabilization protein [Rhodopseudomonas palustris BisB5]
gi|91684061|gb|ABE40363.1| plasmid stabilization protein [Rhodopseudomonas palustris BisB5]
Length=84
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/36 (59%), Positives = 25/36 (70%), Gaps = 0/36 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGL 36
IRNL E AL+VRAA+H+ S EAE RAIL A +
Sbjct 5 TIRNLSEEAHRALKVRAAQHNRSAEAEMRAILEAAV 40
>gi|336037183|gb|AEH83113.1| putative plasmid stability protein [Sinorhizobium meliloti SM11]
Length=123
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/43 (56%), Positives = 27/43 (63%), Gaps = 1/43 (2%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGL-LGEEVP 42
IRNL +G K LR+RAA H S+E EAR IL A L GE P
Sbjct 5 TIRNLDDGLKKRLRIRAAAHGRSMEDEARDILRAALSTGENRP 47
>gi|170696640|ref|ZP_02887759.1| plasmid stability protein [Burkholderia graminis C4D1M]
gi|170138463|gb|EDT06672.1| plasmid stability protein [Burkholderia graminis C4D1M]
Length=83
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/41 (54%), Positives = 26/41 (64%), Gaps = 0/41 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEEV 41
IRNL E K LRV+AA+H S+E EAR IL A L E +
Sbjct 5 TIRNLDEQLKTRLRVQAAQHGRSMEDEARDILRAALSTESI 45
>gi|160901273|ref|YP_001566855.1| plasmid stability protein StbC [Delftia acidovorans SPH-1]
gi|160366857|gb|ABX38470.1| plasmid stability protein StbC [Delftia acidovorans SPH-1]
Length=85
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 25/40 (63%), Gaps = 0/40 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEE 40
+RNLP+ ALRVRAA H S EAE R IL A + EE
Sbjct 5 TVRNLPDAVHRALRVRAAHHGRSTEAEIRDILEAAVRPEE 44
>gi|148243706|ref|YP_001219946.1| hypothetical protein Acry_3181 [Acidiphilium cryptum JF-5]
gi|146400269|gb|ABQ28804.1| hypothetical protein Acry_3181 [Acidiphilium cryptum JF-5]
Length=91
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/36 (59%), Positives = 23/36 (64%), Gaps = 0/36 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGL 36
IRN+ K LRVRAA H HS+EAEAR IL L
Sbjct 14 TIRNIDAAVKERLRVRAAEHGHSMEAEARRILQTAL 49
>gi|148258883|ref|YP_001243468.1| plasmid stability protein [Bradyrhizobium sp. BTAi1]
gi|146411056|gb|ABQ39562.1| plasmid stability protein [Bradyrhizobium sp. BTAi1]
Length=84
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/36 (59%), Positives = 25/36 (70%), Gaps = 0/36 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGL 36
IRNL E AL+VRAA+H+ S EAE RAIL A +
Sbjct 5 TIRNLSEEAHRALKVRAAQHNRSTEAEMRAILEAAV 40
>gi|56750012|ref|YP_170713.1| panthotenate metabolism flavoprotein [Synechococcus elongatus
PCC 6301]
gi|56684971|dbj|BAD78193.1| panthotenate metabolism flavoprotein [Synechococcus elongatus
PCC 6301]
Length=84
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/32 (57%), Positives = 23/32 (72%), Gaps = 0/32 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAIL 32
+RNL E KA+LR+RAAR+ S+E E R IL
Sbjct 6 TVRNLKESVKASLRLRAARNQRSLEEEVRIIL 37
>gi|81300353|ref|YP_400561.1| panthotenate metabolism flavoprotein [Synechococcus elongatus
PCC 7942]
gi|81169234|gb|ABB57574.1| panthotenate metabolism flavoprotein [Synechococcus elongatus
PCC 7942]
Length=83
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/32 (57%), Positives = 23/32 (72%), Gaps = 0/32 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAIL 32
+RNL E KA+LR+RAAR+ S+E E R IL
Sbjct 5 TVRNLKESVKASLRLRAARNQRSLEEEVRIIL 36
>gi|15838191|ref|NP_298879.1| plasmid stabilization protein [Xylella fastidiosa 9a5c]
gi|9106637|gb|AAF84399.1|AE003987_3 plasmid stabilization protein [Xylella fastidiosa 9a5c]
Length=86
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/33 (61%), Positives = 22/33 (67%), Gaps = 0/33 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILT 33
+RNLP+ ALRVRAA H S EAE R ILT
Sbjct 7 TVRNLPDEVHRALRVRAATHGRSTEAEVREILT 39
>gi|300311537|ref|YP_003775629.1| plasmid stabilization protein [Herbaspirillum seropedicae SmR1]
gi|300074322|gb|ADJ63721.1| plasmid stabilization protein [Herbaspirillum seropedicae SmR1]
Length=84
Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/33 (61%), Positives = 23/33 (70%), Gaps = 0/33 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILT 33
+RNLP+ ALRVRAA+H S EAE R ILT
Sbjct 5 TVRNLPDEVHRALRVRAAQHGRSTEAEIREILT 37
>gi|71276693|ref|ZP_00652963.1| plasmid stabilization protein [Xylella fastidiosa Dixon]
gi|71899080|ref|ZP_00681245.1| plasmid stabilization protein [Xylella fastidiosa Ann-1]
gi|170731343|ref|YP_001776776.1| plasmid stabilization protein [Xylella fastidiosa M12]
gi|71162519|gb|EAO12251.1| plasmid stabilization protein [Xylella fastidiosa Dixon]
gi|71731193|gb|EAO33259.1| plasmid stabilization protein [Xylella fastidiosa Ann-1]
gi|167966136|gb|ACA13146.1| plasmid stabilization protein [Xylella fastidiosa M12]
Length=84
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/33 (61%), Positives = 22/33 (67%), Gaps = 0/33 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILT 33
+RNLP+ ALRVRAA H S EAE R ILT
Sbjct 5 TVRNLPDEVHRALRVRAATHGRSTEAEVREILT 37
>gi|170700739|ref|ZP_02891733.1| plasmid stability protein-like protein [Burkholderia ambifaria
IOP40-10]
gi|170134346|gb|EDT02680.1| plasmid stability protein-like protein [Burkholderia ambifaria
IOP40-10]
Length=91
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/32 (60%), Positives = 23/32 (72%), Gaps = 0/32 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAIL 32
+RNLP+ ALR+RAA+H S EAE RAIL
Sbjct 17 TVRNLPDEVHRALRIRAAQHGRSTEAEVRAIL 48
>gi|241113035|ref|YP_002972870.1| hypothetical protein Rleg_4675 [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240861243|gb|ACS58909.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length=87
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/63 (50%), Positives = 35/63 (56%), Gaps = 7/63 (11%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAIL-TAGLLGEEVPMPVLLAAD------SGH 53
IRNL E T ALRVRAA H S EAE R IL TA E V + LLA+ S +
Sbjct 8 TIRNLSEETHRALRVRAAHHGRSTEAEIRDILETAVRPAERVMLGSLLASIGREAGLSNN 67
Query 54 DID 56
D+D
Sbjct 68 DVD 70
>gi|92113197|ref|YP_573125.1| hypothetical protein Csal_1069 [Chromohalobacter salexigens DSM
3043]
gi|91796287|gb|ABE58426.1| hypothetical protein Csal_1069 [Chromohalobacter salexigens DSM
3043]
Length=95
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/36 (56%), Positives = 23/36 (64%), Gaps = 0/36 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGL 36
IRNL E KA LR+ AA+H HS+E E R IL L
Sbjct 20 TIRNLDEQIKAQLRMEAAKHGHSMEEEVRIILRGAL 55
>gi|91789860|ref|YP_550812.1| hypothetical protein Bpro_4020 [Polaromonas sp. JS666]
gi|91699085|gb|ABE45914.1| conserved hypothetical protein [Polaromonas sp. JS666]
Length=82
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 0/40 (0%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLLGEE 40
+RNL E K LR+RAARH SVE E R IL + E+
Sbjct 5 TVRNLDESVKTGLRLRAARHGCSVEQEVRQILRQAVAPEQ 44
>gi|116248808|ref|YP_764649.1| putative plasmid stability protein [Rhizobium leguminosarum bv.
viciae 3841]
gi|115253458|emb|CAK11848.1| putative plasmid stability protein [Rhizobium leguminosarum bv.
viciae 3841]
Length=87
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query 1 VIRNLPEGTKAALRVRAARHHHSVEAEARAILTAGLL-GEEVPMPVLLAA 49
IRNL + T ALRVRAA H S EAE R I+ A + E V + LLAA
Sbjct 8 TIRNLSDETHRALRVRAAHHGRSTEAEIRDIIEAAVRPSERVKLGSLLAA 57
Lambda K H
0.319 0.136 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127819123992
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40