BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1953
Length=103
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609090|ref|NP_216469.1| hypothetical protein Rv1953 [Mycoba... 210 6e-53
gi|289750535|ref|ZP_06509913.1| conserved hypothetical protein [... 209 1e-52
gi|330822387|ref|YP_004362608.1| PilT protein-like protein [Burk... 69.7 1e-10
gi|339505098|ref|YP_004692518.1| hypothetical protein RLO149_c03... 68.6 3e-10
gi|325169017|ref|YP_004285763.1| hypothetical protein ACMV_P4_00... 68.2 4e-10
gi|297570913|ref|YP_003696687.1| PilT protein domain protein [Ar... 68.2 4e-10
gi|312962427|ref|ZP_07776918.1| PIN domain protein [Pseudomonas ... 67.8 5e-10
gi|338992288|ref|ZP_08635015.1| PilT domain-containing protein [... 66.6 1e-09
gi|148550620|ref|YP_001260059.1| PilT domain-containing protein ... 66.6 1e-09
gi|238025593|ref|YP_002909825.1| PilT protein-like protein [Burk... 66.2 1e-09
gi|290474326|ref|YP_003467205.1| twitching motility protein PilT... 65.9 2e-09
gi|259909342|ref|YP_002649698.1| twitching mobility protein PilT... 65.5 3e-09
gi|54023928|ref|YP_118170.1| hypothetical protein nfa19600 [Noca... 65.1 3e-09
gi|294679118|ref|YP_003579728.1| plasmid stability protein [Rhod... 65.1 3e-09
gi|310766753|gb|ADP11703.1| PilT protein-like protein [Erwinia s... 65.1 4e-09
gi|75675052|ref|YP_317473.1| PilT protein [Nitrobacter winograds... 63.9 6e-09
gi|304313173|ref|YP_003812771.1| PilT protein, N-terminal [gamma... 63.9 7e-09
gi|71900552|ref|ZP_00682680.1| PilT protein, N-terminal [Xylella... 63.5 1e-08
gi|209546642|ref|YP_002278560.1| PilT protein domain-containing ... 63.2 1e-08
gi|86139847|ref|ZP_01058413.1| PIN domain protein [Roseobacter s... 63.2 1e-08
gi|269956325|ref|YP_003326114.1| PilT protein domain-containing ... 63.2 1e-08
gi|121609000|ref|YP_996807.1| PilT domain-containing protein [Ve... 62.4 2e-08
gi|332715377|ref|YP_004442843.1| PilT protein domain protein [Ag... 62.4 2e-08
gi|88813187|ref|ZP_01128427.1| Plasmid stability-like protein [N... 62.4 2e-08
gi|325920457|ref|ZP_08182384.1| putative nucleic acid-binding pr... 62.0 3e-08
gi|257454709|ref|ZP_05619964.1| PilT protein domain protein [Enh... 62.0 3e-08
gi|238897650|ref|YP_002923329.1| hypothetical protein HDEF_0427 ... 62.0 3e-08
gi|339835345|gb|EGQ63030.1| plasmid stability-like protein [Acid... 61.6 4e-08
gi|326314988|ref|YP_004232660.1| PilT protein domain-containing ... 61.6 4e-08
gi|213967520|ref|ZP_03395668.1| PIN domain protein [Pseudomonas ... 61.6 4e-08
gi|320538783|ref|ZP_08038460.1| putative PilT N-terminal domain-... 61.2 4e-08
gi|28869203|ref|NP_791822.1| PIN domain-containing protein [Pseu... 61.2 5e-08
gi|330876065|gb|EGH10214.1| PIN domain-containing protein [Pseud... 61.2 5e-08
gi|330964653|gb|EGH64913.1| PIN domain-containing protein [Pseud... 61.2 5e-08
gi|330899470|gb|EGH30889.1| PilT protein [Pseudomonas syringae p... 60.8 6e-08
gi|330972476|gb|EGH72542.1| PilT protein [Pseudomonas syringae p... 60.5 7e-08
gi|240949138|ref|ZP_04753485.1| plasmid stability-like protein [... 60.5 7e-08
gi|330976036|gb|EGH76102.1| PilT protein [Pseudomonas syringae p... 60.5 9e-08
gi|66046647|ref|YP_236488.1| PilT protein, N-terminal [Pseudomon... 60.5 9e-08
gi|289678932|ref|ZP_06499822.1| PilT protein, N-terminal [Pseudo... 60.1 9e-08
gi|160896837|ref|YP_001562419.1| PilT domain-containing protein ... 60.1 1e-07
gi|330940653|gb|EGH43679.1| PilT protein [Pseudomonas syringae p... 60.1 1e-07
gi|254426195|ref|ZP_05039912.1| hypothetical protein S7335_763 [... 60.1 1e-07
gi|330961260|gb|EGH61520.1| PIN domain-containing protein [Pseud... 59.7 1e-07
gi|304312613|ref|YP_003812211.1| PIN (PilT N terminus) domain pr... 59.7 1e-07
gi|330953791|gb|EGH54051.1| PilT protein [Pseudomonas syringae C... 59.3 2e-07
gi|58038307|ref|YP_190276.1| plasmid stability-like protein [Glu... 58.9 2e-07
gi|254805345|ref|YP_003083566.1| PilT protein-like [Neisseria me... 58.9 3e-07
gi|261392183|emb|CAX49695.1| conserved hypothetical protein [Nei... 58.5 3e-07
gi|330992064|ref|ZP_08316013.1| Putative plasmid stability prote... 58.5 3e-07
>gi|15609090|ref|NP_216469.1| hypothetical protein Rv1953 [Mycobacterium tuberculosis H37Rv]
gi|15841424|ref|NP_336461.1| hypothetical protein MT2003 [Mycobacterium tuberculosis CDC1551]
gi|31793145|ref|NP_855638.1| hypothetical protein Mb1988 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=103
Score = 210 bits (534), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 102/103 (99%), Positives = 103/103 (100%), Gaps = 0/103 (0%)
Query 1 VTYVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSE 60
+TYVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSE
Sbjct 1 MTYVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSE 60
Query 61 HLRRWFDDKVLRIFVFARRGTNLIMQPLAGHIGYSLYSGISWF 103
HLRRWFDDKVLRIFVFARRGTNLIMQPLAGHIGYSLYSGISWF
Sbjct 61 HLRRWFDDKVLRIFVFARRGTNLIMQPLAGHIGYSLYSGISWF 103
>gi|289750535|ref|ZP_06509913.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289691122|gb|EFD58551.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=103
Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/103 (99%), Positives = 103/103 (100%), Gaps = 0/103 (0%)
Query 1 VTYVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSE 60
+TYVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSE
Sbjct 1 MTYVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSE 60
Query 61 HLRRWFDDKVLRIFVFARRGTNLIMQPLAGHIGYSLYSGISWF 103
HLRRWFDDKVLRIFVFARRGTNLIMQPLAGHIGYSLYSGI+WF
Sbjct 61 HLRRWFDDKVLRIFVFARRGTNLIMQPLAGHIGYSLYSGINWF 103
>gi|330822387|ref|YP_004362608.1| PilT protein-like protein [Burkholderia gladioli BSR3]
gi|327374224|gb|AEA65578.1| PilT protein-like protein [Burkholderia gladioli BSR3]
Length=142
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (70%), Gaps = 1/66 (1%)
Query 3 YVLDTNVVSALRVPGR-HPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEH 61
Y+LDT VVSALR P + P+V WA SV V +Q++ A+T+ E+E+GV+A+ER D Q
Sbjct 2 YLLDTCVVSALRRPDKADPSVLTWAKSVSVVQQYISAVTILELEQGVLAQERKDAAQGRV 61
Query 62 LRRWFD 67
+R W D
Sbjct 62 MREWLD 67
>gi|339505098|ref|YP_004692518.1| hypothetical protein RLO149_c036180 [Roseobacter litoralis Och
149]
gi|338759091|gb|AEI95555.1| hypothetical protein RLO149_c036180 [Roseobacter litoralis Och
149]
Length=138
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/102 (39%), Positives = 56/102 (55%), Gaps = 6/102 (5%)
Query 1 VTYVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSE 60
V +LDTNV+S LR P ++P VA+W + + + F+ AITL EIERGV+ +E+ +P +
Sbjct 2 VRIILDTNVISGLRKPAQYPEVASWLRAQRETDLFLSAITLGEIERGVVLQEKKNPEFAR 61
Query 61 HLRRWFDDKVL----RIFVFARRGTNL--IMQPLAGHIGYSL 96
LR W + L RI F+ R + GH G L
Sbjct 62 ALRTWLNATELQFSDRILEFSARDARTWGALSATLGHAGADL 103
>gi|325169017|ref|YP_004285763.1| hypothetical protein ACMV_P4_00160 [Acidiphilium multivorum AIU301]
gi|325052892|dbj|BAJ83226.1| hypothetical protein ACMV_P4_00160 [Acidiphilium multivorum AIU301]
Length=141
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/93 (46%), Positives = 53/93 (57%), Gaps = 12/93 (12%)
Query 3 YVLDTNVVSALR---VPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQS 59
++LDTNVVS LR + HP VA WADSV ++ AIT+ EIE G++ ER DP Q
Sbjct 2 FILDTNVVSELRKVRLGKAHPQVAIWADSVDAETLYISAITILEIEIGILQIERKDPDQG 61
Query 60 EHLRRWFDDKVL-----RIF----VFARRGTNL 83
+ LR W + +VL RIF ARR L
Sbjct 62 DLLRAWLEKQVLPEFEGRIFPVDTAVARRCATL 94
>gi|297570913|ref|YP_003696687.1| PilT protein domain protein [Arcanobacterium haemolyticum DSM
20595]
gi|296931260|gb|ADH92068.1| PilT protein domain protein [Arcanobacterium haemolyticum DSM
20595]
Length=137
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/74 (44%), Positives = 50/74 (68%), Gaps = 0/74 (0%)
Query 1 VTYVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSE 60
+ Y+LDTNVVSALR P ++P VA WA ++ + ++ ++T+AEI RG+ A + D Q++
Sbjct 1 MKYLLDTNVVSALRRPDKNPQVAQWAHNIPQTDCYISSLTVAEIGRGIRAIAKRDIQQAQ 60
Query 61 HLRRWFDDKVLRIF 74
L RWF+ +L F
Sbjct 61 ILSRWFEHDLLPTF 74
>gi|312962427|ref|ZP_07776918.1| PIN domain protein [Pseudomonas fluorescens WH6]
gi|311283354|gb|EFQ61944.1| PIN domain protein [Pseudomonas fluorescens WH6]
Length=136
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/72 (49%), Positives = 42/72 (59%), Gaps = 0/72 (0%)
Query 3 YVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEHL 62
Y+LDTNV+S LR P V AWA SV F+ AITL E+E GV+ ER DP Q + L
Sbjct 2 YLLDTNVISELRKPQADAKVVAWAKSVVAPRMFISAITLKELETGVLRMERRDPAQGKVL 61
Query 63 RRWFDDKVLRIF 74
R W V+ F
Sbjct 62 RTWLKRHVMPAF 73
>gi|338992288|ref|ZP_08635015.1| PilT domain-containing protein [Acidiphilium sp. PM]
gi|338204789|gb|EGO93198.1| PilT domain-containing protein [Acidiphilium sp. PM]
Length=145
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/75 (47%), Positives = 46/75 (62%), Gaps = 3/75 (4%)
Query 3 YVLDTNVVSALR---VPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQS 59
++LDTNVVS LR + HP V WADSV ++ AIT+ EIE G++ ER DP Q
Sbjct 2 FILDTNVVSELRKVRLGKAHPQVTIWADSVDAKTLYISAITILEIEIGILQIERKDPDQG 61
Query 60 EHLRRWFDDKVLRIF 74
+ LR W + +VL F
Sbjct 62 DLLRAWLEKQVLPEF 76
>gi|148550620|ref|YP_001260059.1| PilT domain-containing protein [Sphingomonas wittichii RW1]
gi|148503039|gb|ABQ71292.1| PilT protein domain protein [Sphingomonas wittichii RW1]
Length=136
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/73 (47%), Positives = 46/73 (64%), Gaps = 1/73 (1%)
Query 3 YVLDTNVVSALRVPGR-HPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEH 61
++LDTNV+SALR P R P V +WAD V + ++ I++ EIE G++AKER D +
Sbjct 2 FLLDTNVISALRRPERLPPEVTSWADEADVDQCYISVISVLEIELGILAKERVDASTGRI 61
Query 62 LRRWFDDKVLRIF 74
LR WF VL F
Sbjct 62 LRTWFQTDVLAAF 74
>gi|238025593|ref|YP_002909825.1| PilT protein-like protein [Burkholderia glumae BGR1]
gi|237880258|gb|ACR32589.1| PilT protein-like protein [Burkholderia glumae BGR1]
Length=142
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (67%), Gaps = 1/66 (1%)
Query 3 YVLDTNVVSALRVPGR-HPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEH 61
Y+LDT VVSALR R P V WA SV V EQ++ A+++ E+E+GV+A+ER D Q
Sbjct 2 YLLDTCVVSALRRSDRADPNVLTWAKSVSVVEQYLSAVSILELEQGVLAQERKDAAQGRV 61
Query 62 LRRWFD 67
+R W D
Sbjct 62 MREWLD 67
>gi|290474326|ref|YP_003467205.1| twitching motility protein PilT [Xenorhabdus bovienii SS-2004]
gi|300723755|ref|YP_003713062.1| PilT protein, N-terminal [Xenorhabdus nematophila ATCC 19061]
gi|289173638|emb|CBJ80418.1| PilT protein, N-terminal [Xenorhabdus bovienii SS-2004]
gi|297630279|emb|CBJ90930.1| PilT protein, N-terminal [Xenorhabdus nematophila ATCC 19061]
Length=141
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 47/75 (63%), Gaps = 3/75 (4%)
Query 3 YVLDTNVVSALRV--PGR-HPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQS 59
YVLDTNVVS LR G+ P VA WA+SV A+ FV AIT+ E+E G++ ER D TQ
Sbjct 2 YVLDTNVVSELRKIRAGKADPNVAKWAESVDAADLFVSAITIMELELGILLIERKDATQG 61
Query 60 EHLRRWFDDKVLRIF 74
LR W + VL F
Sbjct 62 TLLRAWLEQHVLPEF 76
>gi|259909342|ref|YP_002649698.1| twitching mobility protein PilT [Erwinia pyrifoliae Ep1/96]
gi|224964964|emb|CAX56492.1| PilT protein-like [Erwinia pyrifoliae Ep1/96]
gi|283479411|emb|CAY75327.1| putative plasmid stability protein y4jK [Erwinia pyrifoliae DSM
12163]
Length=141
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/72 (48%), Positives = 51/72 (71%), Gaps = 3/72 (4%)
Query 3 YVLDTNVVSALRV--PGRHPA-VAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQS 59
Y+LDTNV++ LR GR V WA+SV V++ F+ AI++ EIERG++ KE++D Q
Sbjct 3 YLLDTNVLAELRKVKSGRCAQQVIDWAESVSVSDTFISAISVLEIERGILLKEKSDSRQG 62
Query 60 EHLRRWFDDKVL 71
+ LR+WF++ VL
Sbjct 63 KILRQWFEEYVL 74
>gi|54023928|ref|YP_118170.1| hypothetical protein nfa19600 [Nocardia farcinica IFM 10152]
gi|54015436|dbj|BAD56806.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=139
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/85 (42%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query 1 VTYVLDTNVVSALRVPGR--HPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQ 58
++++LDTNV+S LR P R P V AW + + +E ++ +T+ EIE GV ER DP Q
Sbjct 1 MSFLLDTNVLSELRKPARAADPGVRAWVAARRPSELYLTVVTVMEIEIGVGRVERRDPAQ 60
Query 59 SEHLRRWFDDKVLRIFVFARRGTNL 83
+ LR W +D VL +F G +L
Sbjct 61 GKRLRTWLEDDVLDVFAGRILGLDL 85
>gi|294679118|ref|YP_003579728.1| plasmid stability protein [Rhodobacter capsulatus SB 1003]
gi|294477934|gb|ADE87321.1| plasmid stability protein [Rhodobacter capsulatus SB 1003]
Length=133
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/69 (48%), Positives = 42/69 (61%), Gaps = 0/69 (0%)
Query 3 YVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEHL 62
Y+LDTNV+SA+R P R P VAAW + F+ ITL EIERG+ ++ DP + L
Sbjct 2 YILDTNVISAVRRPDRAPKVAAWLRGKAEQDLFLSVITLGEIERGIRLQDPRDPDFARDL 61
Query 63 RRWFDDKVL 71
R W D VL
Sbjct 62 RVWLDRTVL 70
>gi|310766753|gb|ADP11703.1| PilT protein-like protein [Erwinia sp. Ejp617]
Length=141
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/72 (48%), Positives = 50/72 (70%), Gaps = 3/72 (4%)
Query 3 YVLDTNVVSALRV--PGRHPA-VAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQS 59
Y+LDTNV+S LR GR WA+SV V++ F+ AI++ EIERG++ KE++D Q
Sbjct 3 YLLDTNVLSELRKVKSGRCAQQFIDWAESVSVSDTFISAISVLEIERGILLKEKSDSRQG 62
Query 60 EHLRRWFDDKVL 71
+ LR+WF++ VL
Sbjct 63 KILRQWFEEYVL 74
>gi|75675052|ref|YP_317473.1| PilT protein [Nitrobacter winogradskyi Nb-255]
gi|74419922|gb|ABA04121.1| PilT protein [Nitrobacter winogradskyi Nb-255]
Length=140
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/73 (48%), Positives = 46/73 (64%), Gaps = 3/73 (4%)
Query 1 VTYVLDTNVVSALRVPGRHPA---VAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPT 57
++Y+LDTNVVS LR G A VAAW D+ + F+ AIT+ E+ERGV+A +R D
Sbjct 1 MSYLLDTNVVSELRKIGDGKADARVAAWVDAEEAESFFISAITILELERGVLAIQRRDAA 60
Query 58 QSEHLRRWFDDKV 70
Q LR W D+ V
Sbjct 61 QGARLRAWLDNHV 73
>gi|304313173|ref|YP_003812771.1| PilT protein, N-terminal [gamma proteobacterium HdN1]
gi|301798906|emb|CBL47142.1| PilT protein, N-terminal [gamma proteobacterium HdN1]
Length=139
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/75 (50%), Positives = 46/75 (62%), Gaps = 3/75 (4%)
Query 3 YVLDTNVVSALR---VPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQS 59
YVLD NV+S LR + VAAWA+SV A+ FV AIT+ E+E GV++ ER D TQ
Sbjct 2 YVLDANVLSELRKVRLGKADMNVAAWAESVDAADLFVSAITIMELELGVLSIERKDATQG 61
Query 60 EHLRRWFDDKVLRIF 74
LR W + VL F
Sbjct 62 AMLRSWLEQHVLPEF 76
>gi|71900552|ref|ZP_00682680.1| PilT protein, N-terminal [Xylella fastidiosa Ann-1]
gi|71729672|gb|EAO31775.1| PilT protein, N-terminal [Xylella fastidiosa Ann-1]
Length=151
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/75 (51%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query 3 YVLDTNVVSALR---VPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQS 59
YVLDTNVVS LR V VAAW SV A+ FV AIT+ E+E G+++ ER D TQ
Sbjct 3 YVLDTNVVSELRKIQVGKADSNVAAWTQSVDAADLFVSAITIMELELGILSIERKDITQG 62
Query 60 EHLRRWFDDKVLRIF 74
LR W + VL F
Sbjct 63 TLLRIWMEQHVLPEF 77
>gi|209546642|ref|YP_002278560.1| PilT protein domain-containing protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209537886|gb|ACI57820.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length=140
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/73 (44%), Positives = 46/73 (64%), Gaps = 3/73 (4%)
Query 1 VTYVLDTNVVSALRVPGR---HPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPT 57
++Y+LDTNV+S LR G P V AW ++ ++ ++ AIT+ E+ERGV+A +R D
Sbjct 1 MSYLLDTNVISELRKVGDGKADPQVVAWIETANASDFYLSAITILELERGVLAIQRRDAR 60
Query 58 QSEHLRRWFDDKV 70
Q LR W DD V
Sbjct 61 QGSRLRTWLDDHV 73
>gi|86139847|ref|ZP_01058413.1| PIN domain protein [Roseobacter sp. MED193]
gi|85823476|gb|EAQ43685.1| PIN domain protein [Roseobacter sp. MED193]
Length=133
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/77 (46%), Positives = 45/77 (59%), Gaps = 3/77 (3%)
Query 3 YVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEHL 62
YVLDTNV+SALR P R P VA W S + F+ IT+ EIERG+ + +P+ + L
Sbjct 2 YVLDTNVLSALRRPNRAPQVAQWLRSKPEDQLFLSVITIGEIERGIAQQGSRNPSFATDL 61
Query 63 RRWFDDKVLRIFVFARR 79
R W D L +FA R
Sbjct 62 RYWIDRTTL---LFADR 75
>gi|269956325|ref|YP_003326114.1| PilT protein domain-containing protein [Xylanimonas cellulosilytica
DSM 15894]
gi|269305006|gb|ACZ30556.1| PilT protein domain protein [Xylanimonas cellulosilytica DSM
15894]
Length=138
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/72 (44%), Positives = 45/72 (63%), Gaps = 0/72 (0%)
Query 3 YVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEHL 62
Y+LDT ++SA R+P R+PAVA W +V + F + L EIE+G+ +ERTD Q L
Sbjct 2 YLLDTTIISAARLPHRNPAVARWLRAVPDRDLFTAVLVLGEIEQGIRRRERTDAAQGAVL 61
Query 63 RRWFDDKVLRIF 74
R W++ V+ F
Sbjct 62 RYWYETAVVPSF 73
>gi|121609000|ref|YP_996807.1| PilT domain-containing protein [Verminephrobacter eiseniae EF01-2]
gi|121553640|gb|ABM57789.1| PilT protein domain protein [Verminephrobacter eiseniae EF01-2]
Length=140
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/75 (50%), Positives = 44/75 (59%), Gaps = 3/75 (4%)
Query 3 YVLDTNVVSALR---VPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQS 59
YVLDTNVVS LR + V AWA SV A+ FV AIT+ E+ GV + ER D TQ
Sbjct 3 YVLDTNVVSELRKVRLGKADAGVTAWAQSVDAADLFVSAITIMELALGVSSIERKDATQG 62
Query 60 EHLRRWFDDKVLRIF 74
LR W + +VL F
Sbjct 63 AMLRSWLEQQVLPEF 77
>gi|332715377|ref|YP_004442843.1| PilT protein domain protein [Agrobacterium sp. H13-3]
gi|325062062|gb|ADY65752.1| PilT protein domain protein [Agrobacterium sp. H13-3]
Length=140
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/73 (44%), Positives = 46/73 (64%), Gaps = 3/73 (4%)
Query 1 VTYVLDTNVVSALRVPGRHPA---VAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPT 57
+ Y+LDTNVVS LR G A V W + ++ F+ AIT+ EIERG+++ +R D +
Sbjct 1 MKYLLDTNVVSELRKAGDGKADANVTRWVSAQDSSDLFISAITILEIERGILSLQRRDGS 60
Query 58 QSEHLRRWFDDKV 70
Q LR+W DD+V
Sbjct 61 QGALLRKWMDDRV 73
>gi|88813187|ref|ZP_01128427.1| Plasmid stability-like protein [Nitrococcus mobilis Nb-231]
gi|88789509|gb|EAR20636.1| Plasmid stability-like protein [Nitrococcus mobilis Nb-231]
Length=140
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/75 (46%), Positives = 43/75 (58%), Gaps = 3/75 (4%)
Query 3 YVLDTNVVSALRVPGRHPA---VAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQS 59
Y+LDTN+VS LR A V AW +SV ++ AI + E+E GV+ ER DP Q
Sbjct 2 YLLDTNIVSELRKAKAGKANKNVKAWGESVSATSLYLSAIAILELEMGVLLIERRDPLQG 61
Query 60 EHLRRWFDDKVLRIF 74
+ LR W DD VL F
Sbjct 62 KMLRTWLDDYVLPAF 76
>gi|325920457|ref|ZP_08182384.1| putative nucleic acid-binding protein, contains PIN domain [Xanthomonas
gardneri ATCC 19865]
gi|325549037|gb|EGD19964.1| putative nucleic acid-binding protein, contains PIN domain [Xanthomonas
gardneri ATCC 19865]
Length=142
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/77 (49%), Positives = 48/77 (63%), Gaps = 3/77 (3%)
Query 1 VTYVLDTNVVSALR--VPGRHPA-VAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPT 57
+ YVLDTNV+S LR G+ A VAAWA+ V A+ FV IT+ E+E GV++ ER DP
Sbjct 1 MMYVLDTNVLSELRKVSLGKADANVAAWAERVDAADLFVSVITVMELELGVLSIERRDPA 60
Query 58 QSEHLRRWFDDKVLRIF 74
Q LR W + +L F
Sbjct 61 QGATLRSWLEQHLLPEF 77
>gi|257454709|ref|ZP_05619964.1| PilT protein domain protein [Enhydrobacter aerosaccus SK60]
gi|257447890|gb|EEV22878.1| PilT protein domain protein [Enhydrobacter aerosaccus SK60]
Length=144
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/76 (40%), Positives = 47/76 (62%), Gaps = 5/76 (6%)
Query 3 YVLDTNVVSALRVPGRH----PAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQ 58
Y++DTN++S +R RH P + AW +S+ + + + + E++RGVI K RTDP Q
Sbjct 2 YLIDTNIISEMR-KIRHRKADPNLTAWVNSINPSLFYTSIVVMMELQRGVIGKHRTDPEQ 60
Query 59 SEHLRRWFDDKVLRIF 74
+ L++WFD V IF
Sbjct 61 GKRLQQWFDISVKAIF 76
>gi|238897650|ref|YP_002923329.1| hypothetical protein HDEF_0427 [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229465407|gb|ACQ67181.1| addiction module, PIN domain protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length=139
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 43/75 (58%), Gaps = 3/75 (4%)
Query 3 YVLDTNVVSALRVPGR---HPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQS 59
++LDTNV+S LR G + V W SV + ++ ITL E+ERGV+ ER D Q
Sbjct 2 FILDTNVISELRKVGDGKANKCVTNWLSSVNSQQLYLSVITLLELERGVLRIERKDDIQG 61
Query 60 EHLRRWFDDKVLRIF 74
+ LRRW D VL F
Sbjct 62 KVLRRWLDGSVLPFF 76
>gi|339835345|gb|EGQ63030.1| plasmid stability-like protein [Acidithiobacillus sp. GGI-221]
Length=142
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/75 (50%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query 3 YVLDTNVVSALRVPGRHPA---VAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQS 59
+VLDTNVVS LR A V AW +SV A+ FV AIT+ E+E GV++ ER D TQ
Sbjct 3 FVLDTNVVSELRKVRLGKADVNVTAWTESVDAADLFVSAITILELELGVLSMERKDATQG 62
Query 60 EHLRRWFDDKVLRIF 74
LR W + VL F
Sbjct 63 ALLRSWLEQHVLPEF 77
>gi|326314988|ref|YP_004232660.1| PilT protein domain-containing protein [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323371824|gb|ADX44093.1| PilT protein domain protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length=143
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/77 (47%), Positives = 49/77 (64%), Gaps = 3/77 (3%)
Query 1 VTYVLDTNVVSALRVP--GRHPA-VAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPT 57
+ YVLDTNV+S LR G+ A V AWA+SV A+ F+ AI++ E+E GV++ ER D
Sbjct 1 MMYVLDTNVLSELRKVRLGKADANVGAWAESVDAADLFISAISVMELELGVLSIERRDAA 60
Query 58 QSEHLRRWFDDKVLRIF 74
Q LR W + +VL F
Sbjct 61 QGRMLRSWLEQQVLPEF 77
>gi|213967520|ref|ZP_03395668.1| PIN domain protein [Pseudomonas syringae pv. tomato T1]
gi|301386483|ref|ZP_07234901.1| PIN domain protein [Pseudomonas syringae pv. tomato Max13]
gi|302062817|ref|ZP_07254358.1| PIN domain protein [Pseudomonas syringae pv. tomato K40]
gi|302131316|ref|ZP_07257306.1| PIN domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|213927821|gb|EEB61368.1| PIN domain protein [Pseudomonas syringae pv. tomato T1]
Length=150
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/72 (42%), Positives = 42/72 (59%), Gaps = 0/72 (0%)
Query 3 YVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEHL 62
++LDTNVVS LR V W+ + + F+ +IT+ E+E G++ ER DPTQ L
Sbjct 2 FLLDTNVVSELRKRNADSNVLRWSRTQMASSLFISSITILELETGILRVERRDPTQGAAL 61
Query 63 RRWFDDKVLRIF 74
R W D VL+ F
Sbjct 62 RMWLDHHVLKAF 73
>gi|320538783|ref|ZP_08038460.1| putative PilT N-terminal domain-containing protein [Serratia
symbiotica str. Tucson]
gi|320031128|gb|EFW13130.1| putative PilT N-terminal domain-containing protein [Serratia
symbiotica str. Tucson]
Length=140
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/77 (49%), Positives = 50/77 (65%), Gaps = 3/77 (3%)
Query 1 VTYVLDTNVVSALRV--PGRHPA-VAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPT 57
+ +VLDTNVVS LR G+ A VAAWA+++ A+ FV +ITL E+E G+++ ER D
Sbjct 1 MMFVLDTNVVSELRKVRTGKIDANVAAWAETMDAADLFVSSITLMELELGILSFERRDAL 60
Query 58 QSEHLRRWFDDKVLRIF 74
Q LR WF+ VL F
Sbjct 61 QGAVLRSWFEQHVLPEF 77
>gi|28869203|ref|NP_791822.1| PIN domain-containing protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28852443|gb|AAO55517.1| PIN domain protein [Pseudomonas syringae pv. tomato str. DC3000]
gi|331016966|gb|EGH97022.1| PIN domain protein [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length=150
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/72 (42%), Positives = 42/72 (59%), Gaps = 0/72 (0%)
Query 3 YVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEHL 62
++LDTNVVS LR V W+ + + F+ +IT+ E+E G++ ER DPTQ L
Sbjct 2 FLLDTNVVSELRKRNADANVLRWSRTQMASSLFISSITILELETGILRVERRDPTQGAAL 61
Query 63 RRWFDDKVLRIF 74
R W D VL+ F
Sbjct 62 RMWLDHHVLKAF 73
>gi|330876065|gb|EGH10214.1| PIN domain-containing protein [Pseudomonas syringae pv. morsprunorum
str. M302280PT]
Length=150
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/72 (42%), Positives = 42/72 (59%), Gaps = 0/72 (0%)
Query 3 YVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEHL 62
++LDTNVVS LR V W+ + + F+ +IT+ E+E G++ ER DPTQ L
Sbjct 2 FLLDTNVVSELRKRNADANVLRWSRTQMASSLFISSITILELETGILRIERRDPTQGAAL 61
Query 63 RRWFDDKVLRIF 74
R W D VL+ F
Sbjct 62 RMWLDHHVLKAF 73
>gi|330964653|gb|EGH64913.1| PIN domain-containing protein [Pseudomonas syringae pv. actinidiae
str. M302091]
Length=150
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/72 (42%), Positives = 42/72 (59%), Gaps = 0/72 (0%)
Query 3 YVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEHL 62
++LDTNVVS LR V W+ + + F+ +IT+ E+E G++ ER DPTQ L
Sbjct 2 FLLDTNVVSELRKRNADANVLRWSRTQMASSLFISSITILELETGILRIERRDPTQGAAL 61
Query 63 RRWFDDKVLRIF 74
R W D VL+ F
Sbjct 62 RMWLDHHVLKAF 73
>gi|330899470|gb|EGH30889.1| PilT protein [Pseudomonas syringae pv. japonica str. M301072PT]
Length=150
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/72 (42%), Positives = 42/72 (59%), Gaps = 0/72 (0%)
Query 3 YVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEHL 62
++LDTNVVS LR V W+ + + F+ +IT+ E+E G++ ER DPTQ L
Sbjct 2 FLLDTNVVSELRKRTADANVLRWSRTQMASSLFISSITILELETGILRIERRDPTQGAGL 61
Query 63 RRWFDDKVLRIF 74
R W D VL+ F
Sbjct 62 RMWLDQHVLKAF 73
>gi|330972476|gb|EGH72542.1| PilT protein [Pseudomonas syringae pv. aceris str. M302273PT]
Length=150
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/72 (42%), Positives = 42/72 (59%), Gaps = 0/72 (0%)
Query 3 YVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEHL 62
++LDTNVVS LR V W+ + + F+ +IT+ E+E G++ ER DPTQ L
Sbjct 2 FLLDTNVVSELRKRTADANVLRWSRTQMASSLFISSITILELETGILRIERRDPTQGAIL 61
Query 63 RRWFDDKVLRIF 74
R W D VL+ F
Sbjct 62 RMWLDQHVLKAF 73
>gi|240949138|ref|ZP_04753485.1| plasmid stability-like protein [Actinobacillus minor NM305]
gi|240296441|gb|EER47077.1| plasmid stability-like protein [Actinobacillus minor NM305]
Length=140
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/75 (43%), Positives = 44/75 (59%), Gaps = 3/75 (4%)
Query 3 YVLDTNVVSALR---VPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQS 59
Y+LDTNV+S +R +P W ++ + F+ A+ L EIERG++AKER D Q
Sbjct 2 YLLDTNVISEVRKIKTGKANPRFVEWFSTIAEKDIFINAMVLMEIERGILAKERKDFIQG 61
Query 60 EHLRRWFDDKVLRIF 74
LR WFD+ VL F
Sbjct 62 AVLRSWFDNVVLPTF 76
>gi|330976036|gb|EGH76102.1| PilT protein [Pseudomonas syringae pv. aptata str. DSM 50252]
Length=150
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/72 (42%), Positives = 42/72 (59%), Gaps = 0/72 (0%)
Query 3 YVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEHL 62
++LDTNVVS LR V W+ + + F+ +IT+ E+E G++ ER DPTQ L
Sbjct 2 FLLDTNVVSELRKRTADANVLRWSRTQMASSLFISSITILELETGILRIERRDPTQGAVL 61
Query 63 RRWFDDKVLRIF 74
R W D VL+ F
Sbjct 62 RMWLDQHVLKAF 73
>gi|66046647|ref|YP_236488.1| PilT protein, N-terminal [Pseudomonas syringae pv. syringae B728a]
gi|63257354|gb|AAY38450.1| PilT protein, N-terminal [Pseudomonas syringae pv. syringae B728a]
Length=150
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/72 (42%), Positives = 42/72 (59%), Gaps = 0/72 (0%)
Query 3 YVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEHL 62
++LDTNVVS LR V W+ + + F+ +IT+ E+E G++ ER DPTQ L
Sbjct 2 FLLDTNVVSELRKRTADANVLRWSRTQMASSLFISSITILELETGILRIERRDPTQGAIL 61
Query 63 RRWFDDKVLRIF 74
R W D VL+ F
Sbjct 62 RMWLDQHVLKAF 73
>gi|289678932|ref|ZP_06499822.1| PilT protein, N-terminal [Pseudomonas syringae pv. syringae FF5]
Length=150
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/72 (42%), Positives = 42/72 (59%), Gaps = 0/72 (0%)
Query 3 YVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEHL 62
++LDTNVVS LR V W+ + + F+ +IT+ E+E G++ ER DPTQ L
Sbjct 2 FLLDTNVVSELRKRTADANVLRWSRTQMASSLFISSITILELETGILRIERRDPTQGAVL 61
Query 63 RRWFDDKVLRIF 74
R W D VL+ F
Sbjct 62 RMWLDQHVLKAF 73
>gi|160896837|ref|YP_001562419.1| PilT domain-containing protein [Delftia acidovorans SPH-1]
gi|160362421|gb|ABX34034.1| PilT protein domain protein [Delftia acidovorans SPH-1]
Length=141
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/75 (46%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query 3 YVLDTNVVSALR--VPGR-HPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQS 59
Y++D+N+VS LR GR + V AWA SV F+ AITL E+E+GV K R DP
Sbjct 2 YLVDSNIVSELRKASSGRANDGVVAWAQSVAADSLFISAITLMELEKGVQLKARQDPVAG 61
Query 60 EHLRRWFDDKVLRIF 74
+ LRRW ++V F
Sbjct 62 QVLRRWLVERVFTAF 76
>gi|330940653|gb|EGH43679.1| PilT protein [Pseudomonas syringae pv. pisi str. 1704B]
Length=112
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/72 (42%), Positives = 42/72 (59%), Gaps = 0/72 (0%)
Query 3 YVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEHL 62
++LDTNVVS LR V W+ + + F+ +IT+ E+E G++ ER DPTQ L
Sbjct 2 FLLDTNVVSELRKRTADANVLRWSRTQMASSLFISSITILELETGILRIERRDPTQGAVL 61
Query 63 RRWFDDKVLRIF 74
R W D VL+ F
Sbjct 62 RMWLDQHVLKAF 73
>gi|254426195|ref|ZP_05039912.1| hypothetical protein S7335_763 [Synechococcus sp. PCC 7335]
gi|196188618|gb|EDX83583.1| hypothetical protein S7335_763 [Synechococcus sp. PCC 7335]
Length=138
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/72 (46%), Positives = 45/72 (63%), Gaps = 3/72 (4%)
Query 3 YVLDTNVVSALRVPGR---HPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQS 59
++LDTNVVS LR G +P V WA + + F+ AIT+ E+ERGV+ ER D Q
Sbjct 2 FLLDTNVVSELRKVGAGRANPQVTRWAIATPGEQTFLSAITIFELERGVLQIERRDYEQG 61
Query 60 EHLRRWFDDKVL 71
+ LR+W +D VL
Sbjct 62 KALRQWLNDGVL 73
>gi|330961260|gb|EGH61520.1| PIN domain-containing protein [Pseudomonas syringae pv. maculicola
str. ES4326]
Length=150
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/72 (44%), Positives = 41/72 (57%), Gaps = 0/72 (0%)
Query 3 YVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEHL 62
++LDTNVVS LR V W+ + F+ AIT+ E+E GV+ ER DPTQ L
Sbjct 2 FLLDTNVVSELRKRNADTNVVRWSRDHMASSLFISAITVLELETGVLRIERRDPTQGAAL 61
Query 63 RRWFDDKVLRIF 74
R W + VL+ F
Sbjct 62 RLWLEHNVLKAF 73
>gi|304312613|ref|YP_003812211.1| PIN (PilT N terminus) domain protein [gamma proteobacterium HdN1]
gi|301798346|emb|CBL46568.1| PIN (PilT N terminus) domain protein [gamma proteobacterium HdN1]
Length=181
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (39%), Positives = 41/78 (53%), Gaps = 0/78 (0%)
Query 3 YVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEHL 62
Y+LDTN+VS LR P H V AW +SV+ A + +TL EI+ G+ DP ++ +
Sbjct 47 YLLDTNIVSELRKPKPHGGVLAWLNSVEDAHLHIATVTLGEIQAGIELTRDQDPEKAAEI 106
Query 63 RRWFDDKVLRIFVFARRG 80
RW D V A G
Sbjct 107 ERWVDQVAEAYNVLAMDG 124
>gi|330953791|gb|EGH54051.1| PilT protein [Pseudomonas syringae Cit 7]
Length=150
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (41%), Positives = 42/72 (59%), Gaps = 0/72 (0%)
Query 3 YVLDTNVVSALRVPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEHL 62
++LDTNVVS LR V W+ + + F+ +IT+ E+E G++ ER DPTQ L
Sbjct 2 FLLDTNVVSELRKRTADANVLRWSRTQMASSLFISSITILELETGILRIERRDPTQGAVL 61
Query 63 RRWFDDKVLRIF 74
R W D V++ F
Sbjct 62 RMWLDQHVMKAF 73
>gi|58038307|ref|YP_190276.1| plasmid stability-like protein [Gluconobacter oxydans 621H]
gi|58000721|gb|AAW59620.1| Plasmid stability-like protein [Gluconobacter oxydans 621H]
Length=142
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/75 (47%), Positives = 46/75 (62%), Gaps = 3/75 (4%)
Query 3 YVLDTNVVSALRV--PGR-HPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQS 59
++LDTNVVS LR GR P VA WA+ V+ F+ AIT+ E++ GV+ ER DP Q
Sbjct 2 FLLDTNVVSELRKVRAGRADPNVARWAEQVEAETLFLSAITVMELDVGVMRIERRDPAQG 61
Query 60 EHLRRWFDDKVLRIF 74
LR W ++ VL F
Sbjct 62 SVLRNWLENYVLPEF 76
>gi|254805345|ref|YP_003083566.1| PilT protein-like [Neisseria meningitidis alpha14]
gi|254668887|emb|CBA07027.1| PilT protein-like [Neisseria meningitidis alpha14]
Length=138
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/73 (43%), Positives = 42/73 (58%), Gaps = 1/73 (1%)
Query 3 YVLDTNVVSALRVPGRHPA-VAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEH 61
Y+LDTNV+S R R V AW +++ AE + AI + E+ERGV+ ER D Q
Sbjct 2 YLLDTNVISETRQANRADGNVRAWLNTIDPAEMYTSAIVMMELERGVLGMERKDGQQGGI 61
Query 62 LRRWFDDKVLRIF 74
LRRW ++ V F
Sbjct 62 LRRWLEEVVKPTF 74
>gi|261392183|emb|CAX49695.1| conserved hypothetical protein [Neisseria meningitidis 8013]
gi|325204550|gb|ADZ00004.1| putative plasmid stability protein y4jK [Neisseria meningitidis
M01-240355]
Length=138
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/73 (43%), Positives = 42/73 (58%), Gaps = 1/73 (1%)
Query 3 YVLDTNVVSALRVPGRHPA-VAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQSEH 61
Y+LDTNV+S R R V AW +++ AE + AI + E+ERGV+ ER D Q
Sbjct 2 YLLDTNVISETRRANRADGNVRAWLNTIDPAEMYTSAIVMMELERGVLGMERKDGQQGGI 61
Query 62 LRRWFDDKVLRIF 74
LRRW ++ V F
Sbjct 62 LRRWLEEVVKPTF 74
>gi|330992064|ref|ZP_08316013.1| Putative plasmid stability protein y4jK [Gluconacetobacter sp.
SXCC-1]
gi|329761085|gb|EGG77580.1| Putative plasmid stability protein y4jK [Gluconacetobacter sp.
SXCC-1]
Length=142
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (59%), Gaps = 3/75 (4%)
Query 3 YVLDTNVVSALR---VPGRHPAVAAWADSVQVAEQFVVAITLAEIERGVIAKERTDPTQS 59
++LDTNVVS LR P VAAWADSV+ + ++ AIT+ E+E G++ ER D
Sbjct 2 FLLDTNVVSELRKIRAGKADPNVAAWADSVEAEDLYLSAITVMELENGILRVERRDGATG 61
Query 60 EHLRRWFDDKVLRIF 74
LR W + VL F
Sbjct 62 TILRTWLEQHVLPAF 76
Lambda K H
0.325 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127822873252
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40