BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1954A

Length=100
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|332321901|sp|P0CV86.1|Y954A_MYCTU  RecName: Full=Uncharacteriz...   199    1e-49
gi|308231991|ref|ZP_07663967.1|  hypothetical protein TMAG_02132 ...   145    2e-33
gi|336120575|ref|YP_004575361.1|  hypothetical protein MLP_49440 ...  89.7    1e-16
gi|312193910|ref|YP_004013971.1|  hypothetical protein FraEuI1c_0...  81.6    3e-14
gi|257074511|ref|YP_003162908.1|  hypothetical protein CAP2UW1_45...  56.2    1e-06
gi|229494973|ref|ZP_04388723.1|  conserved hypothetical protein [...  54.3    5e-06
gi|294667860|ref|ZP_06733069.1|  hypothetical protein XAUC_38210 ...  51.6    4e-05
gi|291543334|emb|CBL16443.1|  hypothetical protein RUM_01900 [Rum...  50.8    7e-05
gi|289165202|ref|YP_003455340.1|  hypothetical protein LLO_1865 [...  50.1    1e-04
gi|330719200|ref|ZP_08313800.1|  hypothetical protein LfalK3_0824...  36.2    1.8  
gi|296117367|ref|ZP_06835957.1|  hypothetical protein GXY_16162 [...  35.8    2.2  
gi|257898390|ref|ZP_05678043.1|  predicted protein [Enterococcus ...  35.0    3.6  
gi|330991891|ref|ZP_08315840.1|  hypothetical protein SXCC_01796 ...  33.9    8.0  


>gi|332321901|sp|P0CV86.1|Y954A_MYCTU RecName: Full=Uncharacterized protein Rv1954A
Length=100

 Score =  199 bits (506),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 100/100 (100%), Positives = 100/100 (100%), Gaps = 0/100 (0%)

Query  1   MARGRVVCIGDAGCDCTPGVFRATAGGMPVLVVIESGTGGDQMARKATSPGKPAPTSGQY  60
           MARGRVVCIGDAGCDCTPGVFRATAGGMPVLVVIESGTGGDQMARKATSPGKPAPTSGQY
Sbjct  1   MARGRVVCIGDAGCDCTPGVFRATAGGMPVLVVIESGTGGDQMARKATSPGKPAPTSGQY  60

Query  61  RPVGGGNEVTVPKGHRLPPSPKPGQKWVNVDPTKNKSGRG  100
           RPVGGGNEVTVPKGHRLPPSPKPGQKWVNVDPTKNKSGRG
Sbjct  61  RPVGGGNEVTVPKGHRLPPSPKPGQKWVNVDPTKNKSGRG  100


>gi|308231991|ref|ZP_07663967.1| hypothetical protein TMAG_02132 [Mycobacterium tuberculosis SUMu001]
 gi|308369570|ref|ZP_07666753.1| hypothetical protein TMBG_00489 [Mycobacterium tuberculosis SUMu002]
 gi|308370873|ref|ZP_07667034.1| hypothetical protein TMCG_00038 [Mycobacterium tuberculosis SUMu003]
 20 more sequence titles
 
gi|308372100|ref|ZP_07667299.1| hypothetical protein TMDG_02775 [Mycobacterium tuberculosis SUMu004]
 gi|308373282|ref|ZP_07667547.1| hypothetical protein TMEG_01848 [Mycobacterium tuberculosis SUMu005]
 gi|308374449|ref|ZP_07667787.1| hypothetical protein TMFG_03459 [Mycobacterium tuberculosis SUMu006]
 gi|308375731|ref|ZP_07668097.1| hypothetical protein TMGG_00498 [Mycobacterium tuberculosis SUMu007]
 gi|308376874|ref|ZP_07668369.1| hypothetical protein TMHG_01131 [Mycobacterium tuberculosis SUMu008]
 gi|308377877|ref|ZP_07668612.1| hypothetical protein TMIG_00607 [Mycobacterium tuberculosis SUMu009]
 gi|308379083|ref|ZP_07668892.1| hypothetical protein TMJG_00202 [Mycobacterium tuberculosis SUMu010]
 gi|308380234|ref|ZP_07669143.1| hypothetical protein TMKG_00205 [Mycobacterium tuberculosis SUMu011]
 gi|308215366|gb|EFO74765.1| hypothetical protein TMAG_02132 [Mycobacterium tuberculosis SUMu001]
 gi|308327121|gb|EFP15972.1| hypothetical protein TMBG_00489 [Mycobacterium tuberculosis SUMu002]
 gi|308330557|gb|EFP19408.1| hypothetical protein TMCG_00038 [Mycobacterium tuberculosis SUMu003]
 gi|308334391|gb|EFP23242.1| hypothetical protein TMDG_02775 [Mycobacterium tuberculosis SUMu004]
 gi|308338187|gb|EFP27038.1| hypothetical protein TMEG_01848 [Mycobacterium tuberculosis SUMu005]
 gi|308341881|gb|EFP30732.1| hypothetical protein TMFG_03459 [Mycobacterium tuberculosis SUMu006]
 gi|308345371|gb|EFP34222.1| hypothetical protein TMGG_00498 [Mycobacterium tuberculosis SUMu007]
 gi|308349674|gb|EFP38525.1| hypothetical protein TMHG_01131 [Mycobacterium tuberculosis SUMu008]
 gi|308354303|gb|EFP43154.1| hypothetical protein TMIG_00607 [Mycobacterium tuberculosis SUMu009]
 gi|308358245|gb|EFP47096.1| hypothetical protein TMJG_00202 [Mycobacterium tuberculosis SUMu010]
 gi|308362174|gb|EFP51025.1| hypothetical protein TMKG_00205 [Mycobacterium tuberculosis SUMu011]
 gi|323719518|gb|EGB28644.1| hypothetical protein TMMG_01214 [Mycobacterium tuberculosis CDC1551A]
Length=73

 Score =  145 bits (366),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  28  MPVLVVIESGTGGDQMARKATSPGKPAPTSGQYRPVGGGNEVTVPKGHRLPPSPKPGQKW  87
           MPVLVVIESGTGGDQMARKATSPGKPAPTSGQYRPVGGGNEVTVPKGHRLPPSPKPGQKW
Sbjct  1   MPVLVVIESGTGGDQMARKATSPGKPAPTSGQYRPVGGGNEVTVPKGHRLPPSPKPGQKW  60

Query  88  VNVDPTKNKSGRG  100
           VNVDPTKNKSGRG
Sbjct  61  VNVDPTKNKSGRG  73


>gi|336120575|ref|YP_004575361.1| hypothetical protein MLP_49440 [Microlunatus phosphovorus NM-1]
 gi|334688373|dbj|BAK37958.1| hypothetical protein MLP_49440 [Microlunatus phosphovorus NM-1]
Length=57

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 45/54 (84%), Positives = 46/54 (86%), Gaps = 0/54 (0%)

Query  46  KATSPGKPAPTSGQYRPVGGGNEVTVPKGHRLPPSPKPGQKWVNVDPTKNKSGR  99
           K   PG PAPTSGQYRPVGGG EVTVPKGHRLPP P+PG  WVNVDPTKNKSGR
Sbjct  3   KGNKPGTPAPTSGQYRPVGGGPEVTVPKGHRLPPGPRPGVTWVNVDPTKNKSGR  56


>gi|312193910|ref|YP_004013971.1| hypothetical protein FraEuI1c_0013 [Frankia sp. EuI1c]
 gi|311225246|gb|ADP78101.1| hypothetical protein FraEuI1c_0013 [Frankia sp. EuI1c]
Length=58

 Score = 81.6 bits (200),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 42/58 (73%), Positives = 44/58 (76%), Gaps = 0/58 (0%)

Query  43  MARKATSPGKPAPTSGQYRPVGGGNEVTVPKGHRLPPSPKPGQKWVNVDPTKNKSGRG  100
           M  K   PG PAP SGQYRP GGG EVTVPKGHRLPP+P+PGQ W  VD TKN SGRG
Sbjct  1   MLAKPVKPGTPAPASGQYRPKGGGAEVTVPKGHRLPPTPRPGQVWKIVDRTKNASGRG  58


>gi|257074511|ref|YP_003162908.1| hypothetical protein CAP2UW1_4501 [Candidatus Accumulibacter 
phosphatis clade IIA str. UW-1]
 gi|257048732|gb|ACV37917.1| hypothetical protein CAP2UW1_4501 [Candidatus Accumulibacter 
phosphatis clade IIA str. UW-1]
Length=54

 Score = 56.2 bits (134),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 31/51 (61%), Positives = 36/51 (71%), Gaps = 0/51 (0%)

Query  46  KATSPGKPAPTSGQYRPVGGGNEVTVPKGHRLPPSPKPGQKWVNVDPTKNK  96
           K   PG PAP SGQY+  G GNEVT  KG  LPP+P+PGQ +  VDPTK+K
Sbjct  3   KILKPGTPAPRSGQYKNPGTGNEVTGVKGKPLPPTPRPGQGYTLVDPTKHK  53


>gi|229494973|ref|ZP_04388723.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|229318125|gb|EEN83996.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=63

 Score = 54.3 bits (129),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 33/62 (54%), Positives = 39/62 (63%), Gaps = 5/62 (8%)

Query  43  MARKATSPGKPAPTSGQYRPVG-----GGNEVTVPKGHRLPPSPKPGQKWVNVDPTKNKS  97
           MA K   PG PAP SGQ   VG      G+E T  +G  LPP+PKPGQ ++ VDPTKN +
Sbjct  1   MASKPLKPGTPAPRSGQVEIVGPRGGRTGDERTTVRGKPLPPTPKPGQGYILVDPTKNGA  60

Query  98  GR  99
           GR
Sbjct  61  GR  62


>gi|294667860|ref|ZP_06733069.1| hypothetical protein XAUC_38210 [Xanthomonas fuscans subsp. aurantifolii 
str. ICPB 10535]
 gi|292602363|gb|EFF45805.1| hypothetical protein XAUC_38210 [Xanthomonas fuscans subsp. aurantifolii 
str. ICPB 10535]
Length=156

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 30/56 (54%), Positives = 37/56 (67%), Gaps = 5/56 (8%)

Query  50   PGKPAPTSGQYRPVG-----GGNEVTVPKGHRLPPSPKPGQKWVNVDPTKNKSGRG  100
            PG+ AP SGQY  VG      G E+T  +G  LPP+P PGQ +V VDP+KN +GRG
Sbjct  100  PGQAAPRSGQYERVGPRGGATGQEITGVRGKPLPPTPGPGQGYVLVDPSKNGAGRG  155


>gi|291543334|emb|CBL16443.1| hypothetical protein RUM_01900 [Ruminococcus sp. 18P13]
Length=54

 Score = 50.8 bits (120),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 28/53 (53%), Positives = 35/53 (67%), Gaps = 1/53 (1%)

Query  43  MARKATSPGKPAPTSGQYRPVGGGNEVTVPKGHRLPPSPKPGQKWVNVDPTKN  95
           MA K T  G+ AP SGQY+PVG   EVT+ KG  +PP+PK    +V VD TK+
Sbjct  1   MATK-TKTGQKAPVSGQYKPVGSKTEVTLVKGKTVPPTPKGATTFVLVDKTKH  52


>gi|289165202|ref|YP_003455340.1| hypothetical protein LLO_1865 [Legionella longbeachae NSW150]
 gi|288858375|emb|CBJ12243.1| hypothetical protein LLO_1865 [Legionella longbeachae NSW150]
Length=59

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 30/55 (55%), Positives = 35/55 (64%), Gaps = 5/55 (9%)

Query  50  PGKPAPTSGQYRPVG-----GGNEVTVPKGHRLPPSPKPGQKWVNVDPTKNKSGR  99
           PG  A  SGQY  VG      G E TV KG  LPP+PKPGQ ++ VD +KNKSG+
Sbjct  4   PGSIADKSGQYEIVGPRGGKTGEERTVTKGEPLPPTPKPGQGYILVDSSKNKSGK  58


>gi|330719200|ref|ZP_08313800.1| hypothetical protein LfalK3_08244 [Leuconostoc fallax KCTC 3537]
Length=56

 Score = 36.2 bits (82),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 7/50 (14%)

Query  46  KATSPGKPAPTSGQYRPVG-------GGNEVTVPKGHRLPPSPKPGQKWV  88
           K  +PG     +G+Y+ VG        G  V + +G RLPP+ KPG KWV
Sbjct  5   KLINPGTDNQPAGRYQEVGPRGGTVPDGKNVMIDQGDRLPPTNKPGDKWV  54


>gi|296117367|ref|ZP_06835957.1| hypothetical protein GXY_16162 [Gluconacetobacter hansenii ATCC 
23769]
 gi|295976133|gb|EFG82921.1| hypothetical protein GXY_16162 [Gluconacetobacter hansenii ATCC 
23769]
Length=78

 Score = 35.8 bits (81),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 18/39 (47%), Positives = 21/39 (54%), Gaps = 0/39 (0%)

Query  41  DQMARKATSPGKPAPTSGQYRPVGGGNEVTVPKGHRLPP  79
           D    +   P  PAP SG YR VG G E+  P+G  LPP
Sbjct  15  DAEFDRLHHPRTPAPHSGIYRCVGCGFEIATPEGQLLPP  53


>gi|257898390|ref|ZP_05678043.1| predicted protein [Enterococcus faecium Com15]
 gi|257836302|gb|EEV61376.1| predicted protein [Enterococcus faecium Com15]
Length=54

 Score = 35.0 bits (79),  Expect = 3.6, Method: Compositional matrix adjust.
 Identities = 21/47 (45%), Positives = 27/47 (58%), Gaps = 7/47 (14%)

Query  49  SPGKPAPTSGQYRPVG--GGN-----EVTVPKGHRLPPSPKPGQKWV  88
            PG+    +G+Y+ VG  GGN       T+ KG RLPP+ KPG KW 
Sbjct  6   KPGEDNKPAGKYKEVGPKGGNVPKGHNATIDKGDRLPPTSKPGNKWT  52


>gi|330991891|ref|ZP_08315840.1| hypothetical protein SXCC_01796 [Gluconacetobacter sp. SXCC-1]
 gi|329760912|gb|EGG77407.1| hypothetical protein SXCC_01796 [Gluconacetobacter sp. SXCC-1]
Length=80

 Score = 33.9 bits (76),  Expect = 8.0, Method: Compositional matrix adjust.
 Identities = 18/34 (53%), Positives = 20/34 (59%), Gaps = 0/34 (0%)

Query  46  KATSPGKPAPTSGQYRPVGGGNEVTVPKGHRLPP  79
           K   P   AP SG YR VG G E+ V +GH LPP
Sbjct  20  KIHPPRTVAPHSGIYRCVGCGVEIAVAEGHLLPP  53



Lambda     K      H
   0.314    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129239199826


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40