BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1954c

Length=173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609091|ref|NP_216470.1|  hypothetical protein Rv1954c [Mycob...   342    1e-92
gi|289750537|ref|ZP_06509915.1|  hypothetical protein TBDG_00746 ...   340    4e-92
gi|340626963|ref|YP_004745415.1|  hypothetical protein MCAN_19701...   340    6e-92
gi|31793146|ref|NP_855639.1|  hypothetical protein Mb1989c [Mycob...   339    8e-92
gi|302798641|ref|XP_002981080.1|  hypothetical protein SELMODRAFT...  37.4    0.86 
gi|302801592|ref|XP_002982552.1|  hypothetical protein SELMODRAFT...  36.6    1.5  
gi|134103271|ref|YP_001108932.1|  hypothetical protein SACE_6843 ...  35.0    4.1  
gi|164660216|ref|XP_001731231.1|  hypothetical protein MGL_1414 [...  34.3    7.1  


>gi|15609091|ref|NP_216470.1| hypothetical protein Rv1954c [Mycobacterium tuberculosis H37Rv]
 gi|167970530|ref|ZP_02552807.1| hypothetical protein MtubH3_21853 [Mycobacterium tuberculosis 
H37Ra]
 gi|289443436|ref|ZP_06433180.1| hypothetical protein TBLG_00537 [Mycobacterium tuberculosis T46]
 17 more sequence titles
 
gi|289570042|ref|ZP_06450269.1| hypothetical protein TBJG_00408 [Mycobacterium tuberculosis T17]
 gi|289574638|ref|ZP_06454865.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289754051|ref|ZP_06513429.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289758064|ref|ZP_06517442.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289762108|ref|ZP_06521486.1| hypothetical protein TBIG_01344 [Mycobacterium tuberculosis GM 
1503]
 gi|339632006|ref|YP_004723648.1| hypothetical protein MAF_19770 [Mycobacterium africanum GM041182]
 gi|12230700|sp|P95260.1|Y1954_MYCTU RecName: Full=Uncharacterized protein Rv1954c/MT2003.1
 gi|1806208|emb|CAB06507.1| HYPOTHETICAL PROTEIN Rv1954c [Mycobacterium tuberculosis H37Rv]
 gi|289416355|gb|EFD13595.1| hypothetical protein TBLG_00537 [Mycobacterium tuberculosis T46]
 gi|289539069|gb|EFD43647.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289543796|gb|EFD47444.1| hypothetical protein TBJG_00408 [Mycobacterium tuberculosis T17]
 gi|289694638|gb|EFD62067.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289709614|gb|EFD73630.1| hypothetical protein TBIG_01344 [Mycobacterium tuberculosis GM 
1503]
 gi|289713628|gb|EFD77640.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|326903560|gb|EGE50493.1| hypothetical protein TBPG_01436 [Mycobacterium tuberculosis W-148]
 gi|339331362|emb|CCC27047.1| hypothetical protein MAF_19770 [Mycobacterium africanum GM041182]
 gi|344219776|gb|AEN00407.1| hypothetical protein MTCTRI2_1987 [Mycobacterium tuberculosis 
CTRI-2]
Length=173

 Score =  342 bits (877),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 173/173 (100%), Positives = 173/173 (100%), Gaps = 0/173 (0%)

Query  1    MAAGSGGGTVGLVLPRVASLSGLDGAPTVPEGSDKALMHLGDPPRRCDTHPDGTSSAAAA  60
            MAAGSGGGTVGLVLPRVASLSGLDGAPTVPEGSDKALMHLGDPPRRCDTHPDGTSSAAAA
Sbjct  1    MAAGSGGGTVGLVLPRVASLSGLDGAPTVPEGSDKALMHLGDPPRRCDTHPDGTSSAAAA  60

Query  61   LVLRRIDVHPLLTGLGRGRQTVSLRNGHLVATANRAILSRRRSRLTRGRSFTSHLITSCP  120
            LVLRRIDVHPLLTGLGRGRQTVSLRNGHLVATANRAILSRRRSRLTRGRSFTSHLITSCP
Sbjct  61   LVLRRIDVHPLLTGLGRGRQTVSLRNGHLVATANRAILSRRRSRLTRGRSFTSHLITSCP  120

Query  121  RLDDHQHRHPTRCRAEHAGCTVATCIPNAHDPAPGHQTPRWGPFRLKPAYTRI  173
            RLDDHQHRHPTRCRAEHAGCTVATCIPNAHDPAPGHQTPRWGPFRLKPAYTRI
Sbjct  121  RLDDHQHRHPTRCRAEHAGCTVATCIPNAHDPAPGHQTPRWGPFRLKPAYTRI  173


>gi|289750537|ref|ZP_06509915.1| hypothetical protein TBDG_00746 [Mycobacterium tuberculosis T92]
 gi|289691124|gb|EFD58553.1| hypothetical protein TBDG_00746 [Mycobacterium tuberculosis T92]
Length=173

 Score =  340 bits (873),  Expect = 4e-92, Method: Compositional matrix adjust.
 Identities = 172/173 (99%), Positives = 172/173 (99%), Gaps = 0/173 (0%)

Query  1    MAAGSGGGTVGLVLPRVASLSGLDGAPTVPEGSDKALMHLGDPPRRCDTHPDGTSSAAAA  60
            MAAGSGGGTVGLVLPRVASLSGLDGAPTVPEGSDKALMHLGDPPRRCDTHPDGTSSAAAA
Sbjct  1    MAAGSGGGTVGLVLPRVASLSGLDGAPTVPEGSDKALMHLGDPPRRCDTHPDGTSSAAAA  60

Query  61   LVLRRIDVHPLLTGLGRGRQTVSLRNGHLVATANRAILSRRRSRLTRGRSFTSHLITSCP  120
            LVLRRIDVHPLLTGLGRGRQTVSLRNGHLVATANRAILSRRRSRLTRGRSFTSHLITSCP
Sbjct  61   LVLRRIDVHPLLTGLGRGRQTVSLRNGHLVATANRAILSRRRSRLTRGRSFTSHLITSCP  120

Query  121  RLDDHQHRHPTRCRAEHAGCTVATCIPNAHDPAPGHQTPRWGPFRLKPAYTRI  173
            RLDDHQHRHPTRCRAEHAGCTVATCIPNAHDPAPGHQTPRWGPFRLKP YTRI
Sbjct  121  RLDDHQHRHPTRCRAEHAGCTVATCIPNAHDPAPGHQTPRWGPFRLKPVYTRI  173


>gi|340626963|ref|YP_004745415.1| hypothetical protein MCAN_19701 [Mycobacterium canettii CIPT 
140010059]
 gi|340005153|emb|CCC44302.1| hypothetical protein MCAN_19701 [Mycobacterium canettii CIPT 
140010059]
Length=173

 Score =  340 bits (871),  Expect = 6e-92, Method: Compositional matrix adjust.
 Identities = 172/173 (99%), Positives = 172/173 (99%), Gaps = 0/173 (0%)

Query  1    MAAGSGGGTVGLVLPRVASLSGLDGAPTVPEGSDKALMHLGDPPRRCDTHPDGTSSAAAA  60
            MA GSGGGTVGLVLPRVASLSGLDGAPTVPEGSDKALMHLGDPPRRCDTHPDGTSSAAAA
Sbjct  1    MARGSGGGTVGLVLPRVASLSGLDGAPTVPEGSDKALMHLGDPPRRCDTHPDGTSSAAAA  60

Query  61   LVLRRIDVHPLLTGLGRGRQTVSLRNGHLVATANRAILSRRRSRLTRGRSFTSHLITSCP  120
            LVLRRIDVHPLLTGLGRGRQTVSLRNGHLVATANRAILSRRRSRLTRGRSFTSHLITSCP
Sbjct  61   LVLRRIDVHPLLTGLGRGRQTVSLRNGHLVATANRAILSRRRSRLTRGRSFTSHLITSCP  120

Query  121  RLDDHQHRHPTRCRAEHAGCTVATCIPNAHDPAPGHQTPRWGPFRLKPAYTRI  173
            RLDDHQHRHPTRCRAEHAGCTVATCIPNAHDPAPGHQTPRWGPFRLKPAYTRI
Sbjct  121  RLDDHQHRHPTRCRAEHAGCTVATCIPNAHDPAPGHQTPRWGPFRLKPAYTRI  173


>gi|31793146|ref|NP_855639.1| hypothetical protein Mb1989c [Mycobacterium bovis AF2122/97]
 gi|121637859|ref|YP_978082.1| hypothetical protein BCG_1993c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224990343|ref|YP_002645030.1| hypothetical protein JTY_1977 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|31618737|emb|CAD94691.1| HYPOTHETICAL PROTEIN Mb1989c [Mycobacterium bovis AF2122/97]
 gi|121493506|emb|CAL71980.1| Hypothetical protein BCG_1993c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224773456|dbj|BAH26262.1| hypothetical protein JTY_1977 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341601886|emb|CCC64560.1| hypothetical protein BCGM_1967c [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=173

 Score =  339 bits (870),  Expect = 8e-92, Method: Compositional matrix adjust.
 Identities = 172/173 (99%), Positives = 172/173 (99%), Gaps = 0/173 (0%)

Query  1    MAAGSGGGTVGLVLPRVASLSGLDGAPTVPEGSDKALMHLGDPPRRCDTHPDGTSSAAAA  60
            MAAGSGGGTVGLVLPRVASLSGLDGAPTVPEGSDKALMHLGDPPRRCDTHPDGTSSAAAA
Sbjct  1    MAAGSGGGTVGLVLPRVASLSGLDGAPTVPEGSDKALMHLGDPPRRCDTHPDGTSSAAAA  60

Query  61   LVLRRIDVHPLLTGLGRGRQTVSLRNGHLVATANRAILSRRRSRLTRGRSFTSHLITSCP  120
            LVLRRIDVHPLLTGLGRGRQTVSLRNGHLVATANRAILSRRRSRLTRGRSFTSHLITSCP
Sbjct  61   LVLRRIDVHPLLTGLGRGRQTVSLRNGHLVATANRAILSRRRSRLTRGRSFTSHLITSCP  120

Query  121  RLDDHQHRHPTRCRAEHAGCTVATCIPNAHDPAPGHQTPRWGPFRLKPAYTRI  173
            RLDDHQHRHPTRCRAEHAGCTVATCIPNA DPAPGHQTPRWGPFRLKPAYTRI
Sbjct  121  RLDDHQHRHPTRCRAEHAGCTVATCIPNARDPAPGHQTPRWGPFRLKPAYTRI  173


>gi|302798641|ref|XP_002981080.1| hypothetical protein SELMODRAFT_444776 [Selaginella moellendorffii]
 gi|300151134|gb|EFJ17781.1| hypothetical protein SELMODRAFT_444776 [Selaginella moellendorffii]
Length=969

 Score = 37.4 bits (85),  Expect = 0.86, Method: Composition-based stats.
 Identities = 41/148 (28%), Positives = 64/148 (44%), Gaps = 27/148 (18%)

Query  5    SGGGTVGLVLPRVASLSGLDGAPTVPEGSDKALMHLGDPPRRCDTHPDGTSSAAAALVLR  64
            + GG  G+++  + +     G+P + E +   L  L D     ++  +      A L + 
Sbjct  716  AAGGAYGIIISCMQT-----GSPRMKEDAAAVLTRLTDSELDANSEQE-----LARLGVM  765

Query  65   RIDVHPLLTGLGRGRQTVSLRNGHLVATANRAILSRRRSRLTRGRSFTSHLITSCPRLDD  124
            R+    L TG  R R+          A AN A LS+R   LT+ +SF   L+    RL  
Sbjct  766  RLLRDTLETGSERAREH---------ACANLANLSKRTPSLTQEQSFFKRLLA---RLGL  813

Query  125  HQHR----HPTRCRAEHAGCTV-ATCIP  147
             Q+R    HP +C A  + C V A  +P
Sbjct  814  KQYRLCVVHPGKCNARASFCMVEAGVVP  841


>gi|302801592|ref|XP_002982552.1| hypothetical protein SELMODRAFT_445238 [Selaginella moellendorffii]
 gi|300149651|gb|EFJ16305.1| hypothetical protein SELMODRAFT_445238 [Selaginella moellendorffii]
Length=969

 Score = 36.6 bits (83),  Expect = 1.5, Method: Composition-based stats.
 Identities = 41/148 (28%), Positives = 64/148 (44%), Gaps = 27/148 (18%)

Query  5    SGGGTVGLVLPRVASLSGLDGAPTVPEGSDKALMHLGDPPRRCDTHPDGTSSAAAALVLR  64
            + GG  G+++  + +     G+P + E +   L  L D     ++  +      A L + 
Sbjct  716  AAGGAYGIIISCMQT-----GSPRMKEEAAAVLTRLTDSVLDANSEQE-----LARLGVM  765

Query  65   RIDVHPLLTGLGRGRQTVSLRNGHLVATANRAILSRRRSRLTRGRSFTSHLITSCPRLDD  124
            R+    L TG  R R+          A AN A LS+R   LT+ +SF   L+    RL  
Sbjct  766  RLLRDTLETGSERAREH---------ACANLANLSKRTPSLTQEQSFFKRLLA---RLGL  813

Query  125  HQHR----HPTRCRAEHAGCTV-ATCIP  147
             Q+R    HP +C A  + C V A  +P
Sbjct  814  KQYRLCVVHPGKCNARASFCMVEAGVVP  841


>gi|134103271|ref|YP_001108932.1| hypothetical protein SACE_6843 [Saccharopolyspora erythraea NRRL 
2338]
 gi|291007936|ref|ZP_06565909.1| hypothetical protein SeryN2_25736 [Saccharopolyspora erythraea 
NRRL 2338]
 gi|133915894|emb|CAM06007.1| hypothetical protein SACE_6843 [Saccharopolyspora erythraea NRRL 
2338]
Length=547

 Score = 35.0 bits (79),  Expect = 4.1, Method: Compositional matrix adjust.
 Identities = 39/149 (27%), Positives = 55/149 (37%), Gaps = 20/149 (13%)

Query  24   DGAPTVPEGSDKALM-HLGDPPRRCDTHPDGTSSAAAALVLRRIDVHPLLTGLGR-----  77
            DG P  PE  ++A + HL  P  RC T P       A   + R+DV   L G  R     
Sbjct  32   DGEPVEPERVERAFVDHLPVPASRCPTFPQPAGYGPATEPVLRVDVEAELVGALRRLAPE  91

Query  78   GRQTVSLR---NGHLVATANRAILSRRRSRLTRGRSFTSHLITSCPRLDDHQHRHPTRCR  134
            G Q +SL     G  +A +  A++                L          +HR  T   
Sbjct  92   GWQRLSLSCAALGERIAVSATAVVGGAELSWIAPFEVVEWL---------RRHRALTYTP  142

Query  135  AEHAGCTVATCIPNAHDPA--PGHQTPRW  161
               A   +   + +  +PA  P H+ PRW
Sbjct  143  GAGAWSNLGIEVADGGEPAFTPDHEPPRW  171


>gi|164660216|ref|XP_001731231.1| hypothetical protein MGL_1414 [Malassezia globosa CBS 7966]
 gi|159105131|gb|EDP44017.1| hypothetical protein MGL_1414 [Malassezia globosa CBS 7966]
Length=1123

 Score = 34.3 bits (77),  Expect = 7.1, Method: Compositional matrix adjust.
 Identities = 22/57 (39%), Positives = 28/57 (50%), Gaps = 1/57 (1%)

Query  14   LPRVASLSGLDGAPTVPEGSDKALMHLGDPPRRCDT-HPDGTSSAAAALVLRRIDVH  69
            L RV     LD  P +PEG  +      DP R CD  H    +S A+ALVL  ++ H
Sbjct  520  LERVLRPESLDDEPHMPEGLSRTFAWTIDPARVCDILHRAKRTSVASALVLDAMEEH  576



Lambda     K      H
   0.321    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 143230884104


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40