BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1956
Length=149
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609093|ref|NP_216472.1| transcriptional regulatory protein ... 303 5e-81
gi|306784717|ref|ZP_07423039.1| antitoxin [Mycobacterium tubercu... 302 1e-80
gi|289574639|ref|ZP_06454866.1| antitoxin, transcriptional regul... 301 2e-80
gi|308403035|ref|ZP_07493693.2| antitoxin [Mycobacterium tubercu... 289 9e-77
gi|308369572|ref|ZP_07418305.2| antitoxin [Mycobacterium tubercu... 288 2e-76
gi|336120577|ref|YP_004575363.1| putative Xre family DNA binding... 84.7 4e-15
gi|297625509|ref|YP_003687272.1| proteins of Bacteriophage / tra... 66.2 1e-09
gi|269957698|ref|YP_003327487.1| XRE family transcriptional regu... 65.1 3e-09
gi|19553021|ref|NP_601023.1| transcriptional regulator [Coryneba... 63.5 9e-09
gi|288933192|ref|YP_003437251.1| XRE family transcriptional regu... 63.2 1e-08
gi|161613417|ref|YP_001587382.1| hypothetical protein SPAB_01131... 63.2 1e-08
gi|308187400|ref|YP_003931531.1| transcriptional regulator [Pant... 62.8 2e-08
gi|291617986|ref|YP_003520728.1| hypothetical Protein PANA_2433 ... 62.4 2e-08
gi|290508717|ref|ZP_06548088.1| transcriptional regulator [Klebs... 62.0 3e-08
gi|283836086|ref|ZP_06355827.1| hypothetical protein CIT292_1050... 61.2 5e-08
gi|296447228|ref|ZP_06889158.1| transcriptional regulator, XRE f... 60.5 8e-08
gi|333928854|ref|YP_004502433.1| helix-turn-helix domain-contain... 60.5 9e-08
gi|262045260|ref|ZP_06018286.1| xre family toxin-antitoxin syste... 60.1 1e-07
gi|227114559|ref|ZP_03828215.1| hypothetical protein PcarbP_1643... 60.1 1e-07
gi|296103507|ref|YP_003613653.1| putative transcriptional regula... 59.7 1e-07
gi|253773505|ref|YP_003036336.1| XRE family transcriptional regu... 59.3 2e-07
gi|189009186|ref|YP_001928068.1| putative transcriptional regula... 59.3 2e-07
gi|170783251|ref|YP_001711585.1| putative DNA-binding protein [C... 59.3 2e-07
gi|167470799|ref|ZP_02335503.1| DNA-binding protein [Yersinia pe... 58.9 3e-07
gi|254360480|ref|ZP_04976629.1| possible transcriptional regulat... 58.5 3e-07
gi|227327175|ref|ZP_03831199.1| helix-turn-helix domain protein ... 58.5 3e-07
gi|167471088|ref|ZP_02335792.1| DNA-binding protein [Yersinia pe... 58.2 4e-07
gi|194337261|ref|YP_002019055.1| XRE family transcriptional regu... 58.2 4e-07
gi|16082687|ref|NP_395234.1| putative transcriptional regulator ... 58.2 4e-07
gi|59889790|emb|CAH19146.1| Transcriptional Regulator [Escherich... 58.2 5e-07
gi|218703535|ref|YP_002411054.1| transcriptional regulator [Esch... 57.8 5e-07
gi|269103380|ref|ZP_06156077.1| putative lipoprotein [Photobacte... 57.8 5e-07
gi|331650584|ref|ZP_08351653.1| toxin-antitoxin system, antitoxi... 57.8 6e-07
gi|333370136|ref|ZP_08462206.1| XRE family transcriptional regul... 57.4 6e-07
gi|293393845|ref|ZP_06638152.1| transcriptional regulator [Serra... 57.4 7e-07
gi|93004830|ref|YP_579234.1| XRE family transcriptional regulato... 57.4 7e-07
gi|300949953|ref|ZP_07163909.1| toxin-antitoxin system, antitoxi... 57.4 7e-07
gi|251787931|ref|YP_003002652.1| XRE family transcriptional regu... 57.4 7e-07
gi|318062226|ref|ZP_07980947.1| proteins of Bacteriophage / tran... 57.0 8e-07
gi|254447114|ref|ZP_05060581.1| transcriptional regulator, XRE f... 57.0 9e-07
gi|302520968|ref|ZP_07273310.1| predicted protein [Streptomyces ... 57.0 9e-07
gi|242240939|ref|YP_002989120.1| XRE family transcriptional regu... 57.0 1e-06
gi|156933285|ref|YP_001437201.1| hypothetical protein ESA_01097 ... 57.0 1e-06
gi|239906136|ref|YP_002952875.1| Xre family DNA-binding protein ... 56.6 1e-06
gi|152994699|ref|YP_001339534.1| XRE family transcriptional regu... 56.6 1e-06
gi|157372070|ref|YP_001480059.1| XRE family transcriptional regu... 56.6 1e-06
gi|317048706|ref|YP_004116354.1| XRE family transcriptional regu... 56.6 1e-06
gi|332850503|ref|ZP_08432806.1| DNA-binding helix-turn-helix pro... 56.6 1e-06
gi|293611472|ref|ZP_06693766.1| conserved hypothetical protein [... 56.6 1e-06
gi|227327343|ref|ZP_03831367.1| hypothetical protein PcarcW_0848... 56.6 1e-06
>gi|15609093|ref|NP_216472.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15841426|ref|NP_336463.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551]
gi|31793148|ref|NP_855641.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
61 more sequence titles
gi|121637861|ref|YP_978084.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|148661763|ref|YP_001283286.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis
H37Ra]
gi|148823167|ref|YP_001287921.1| transcriptional regulator [Mycobacterium tuberculosis F11]
gi|167970528|ref|ZP_02552805.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis H37Ra]
gi|224990345|ref|YP_002645032.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253798998|ref|YP_003031999.1| antitoxin, transcriptional regulator [Mycobacterium tuberculosis
KZN 1435]
gi|254232126|ref|ZP_04925453.1| hypothetical protein TBCG_01904 [Mycobacterium tuberculosis C]
gi|254364773|ref|ZP_04980819.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis str. Haarlem]
gi|254550974|ref|ZP_05141421.1| antitoxin, transcriptional regulator [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289443437|ref|ZP_06433181.1| antitoxin, transcriptional regulator [Mycobacterium tuberculosis
T46]
gi|289447571|ref|ZP_06437315.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
gi|289554269|ref|ZP_06443479.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
gi|289570043|ref|ZP_06450270.1| transcriptional regulator [Mycobacterium tuberculosis T17]
gi|289746107|ref|ZP_06505485.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis 02_1987]
gi|289750538|ref|ZP_06509916.1| transcriptional regulator [Mycobacterium tuberculosis T92]
gi|289754052|ref|ZP_06513430.1| transcriptional regulatory protein [Mycobacterium tuberculosis
EAS054]
gi|289758065|ref|ZP_06517443.1| transcriptional regulatory protein [Mycobacterium tuberculosis
T85]
gi|289762109|ref|ZP_06521487.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|294996876|ref|ZP_06802567.1| antitoxin, transcriptional regulator [Mycobacterium tuberculosis
210]
gi|297634523|ref|ZP_06952303.1| antitoxin, transcriptional regulator [Mycobacterium tuberculosis
KZN 4207]
gi|297731511|ref|ZP_06960629.1| antitoxin, transcriptional regulator [Mycobacterium tuberculosis
KZN R506]
gi|298525449|ref|ZP_07012858.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|306776186|ref|ZP_07414523.1| antitoxin [Mycobacterium tuberculosis SUMu001]
gi|306972295|ref|ZP_07484956.1| antitoxin [Mycobacterium tuberculosis SUMu010]
gi|307080006|ref|ZP_07489176.1| antitoxin [Mycobacterium tuberculosis SUMu011]
gi|313658844|ref|ZP_07815724.1| antitoxin, transcriptional regulator [Mycobacterium tuberculosis
KZN V2475]
gi|339632008|ref|YP_004723650.1| transcriptional regulator [Mycobacterium africanum GM041182]
gi|340626965|ref|YP_004745417.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
gi|81671765|sp|P95258.1|HIGA_MYCTU RecName: Full=Antitoxin HigA
gi|1806206|emb|CAB06505.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis
H37Rv]
gi|13881664|gb|AAK46277.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551]
gi|31618739|emb|CAD94693.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121493508|emb|CAL71982.1| Possible transcriptional regulatory protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|124601185|gb|EAY60195.1| hypothetical protein TBCG_01904 [Mycobacterium tuberculosis C]
gi|134150287|gb|EBA42332.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis str. Haarlem]
gi|148505915|gb|ABQ73724.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis
H37Ra]
gi|148721694|gb|ABR06319.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis F11]
gi|224773458|dbj|BAH26264.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253320501|gb|ACT25104.1| antitoxin, transcriptional regulator [Mycobacterium tuberculosis
KZN 1435]
gi|289416356|gb|EFD13596.1| antitoxin, transcriptional regulator [Mycobacterium tuberculosis
T46]
gi|289420529|gb|EFD17730.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
gi|289438901|gb|EFD21394.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
gi|289543797|gb|EFD47445.1| transcriptional regulator [Mycobacterium tuberculosis T17]
gi|289686635|gb|EFD54123.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis 02_1987]
gi|289691125|gb|EFD58554.1| transcriptional regulator [Mycobacterium tuberculosis T92]
gi|289694639|gb|EFD62068.1| transcriptional regulatory protein [Mycobacterium tuberculosis
EAS054]
gi|289709615|gb|EFD73631.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289713629|gb|EFD77641.1| transcriptional regulatory protein [Mycobacterium tuberculosis
T85]
gi|298495243|gb|EFI30537.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|308215368|gb|EFO74767.1| antitoxin [Mycobacterium tuberculosis SUMu001]
gi|308358247|gb|EFP47098.1| antitoxin [Mycobacterium tuberculosis SUMu010]
gi|308362176|gb|EFP51027.1| antitoxin [Mycobacterium tuberculosis SUMu011]
gi|323719520|gb|EGB28646.1| antitoxin [Mycobacterium tuberculosis CDC1551A]
gi|326903562|gb|EGE50495.1| antitoxin, transcriptional regulator [Mycobacterium tuberculosis
W-148]
gi|328458753|gb|AEB04176.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
gi|339294884|gb|AEJ46995.1| transcriptional regulatory protein [Mycobacterium tuberculosis
CCDC5079]
gi|339298507|gb|AEJ50617.1| transcriptional regulatory protein [Mycobacterium tuberculosis
CCDC5180]
gi|339331364|emb|CCC27049.1| putative transcriptional regulatory protein [Mycobacterium africanum
GM041182]
gi|340005155|emb|CCC44304.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
gi|341601888|emb|CCC64562.1| possible transcriptional regulatory protein [Mycobacterium bovis
BCG str. Moreau RDJ]
gi|344219778|gb|AEN00409.1| transcriptional regulatory protein [Mycobacterium tuberculosis
CTRI-2]
Length=149
Score = 303 bits (777), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 149/149 (100%), Positives = 149/149 (100%), Gaps = 0/149 (0%)
Query 1 MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM 60
MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM
Sbjct 1 MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM 60
Query 61 GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD 120
GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD
Sbjct 61 GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD 120
Query 121 HQVRVGADKEILMQTNWARHISVRQVEVA 149
HQVRVGADKEILMQTNWARHISVRQVEVA
Sbjct 121 HQVRVGADKEILMQTNWARHISVRQVEVA 149
>gi|306784717|ref|ZP_07423039.1| antitoxin [Mycobacterium tuberculosis SUMu003]
gi|306789074|ref|ZP_07427396.1| antitoxin [Mycobacterium tuberculosis SUMu004]
gi|306793409|ref|ZP_07431711.1| antitoxin [Mycobacterium tuberculosis SUMu005]
11 more sequence titles
Length=149
Score = 302 bits (774), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 148/149 (99%), Positives = 149/149 (100%), Gaps = 0/149 (0%)
Query 1 MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM 60
MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM
Sbjct 1 MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM 60
Query 61 GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD 120
GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD
Sbjct 61 GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD 120
Query 121 HQVRVGADKEILMQTNWARHISVRQVEVA 149
HQVRVGADKEILMQTNWARHISVRQVEV+
Sbjct 121 HQVRVGADKEILMQTNWARHISVRQVEVS 149
>gi|289574639|ref|ZP_06454866.1| antitoxin, transcriptional regulator [Mycobacterium tuberculosis
K85]
gi|289539070|gb|EFD43648.1| antitoxin, transcriptional regulator [Mycobacterium tuberculosis
K85]
Length=149
Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 148/149 (99%), Positives = 149/149 (100%), Gaps = 0/149 (0%)
Query 1 MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM 60
MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM
Sbjct 1 MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM 60
Query 61 GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD 120
GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD
Sbjct 61 GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD 120
Query 121 HQVRVGADKEILMQTNWARHISVRQVEVA 149
HQVRVGADKEILMQTNWAR+ISVRQVEVA
Sbjct 121 HQVRVGADKEILMQTNWARYISVRQVEVA 149
>gi|308403035|ref|ZP_07493693.2| antitoxin [Mycobacterium tuberculosis SUMu012]
gi|308365832|gb|EFP54683.1| antitoxin [Mycobacterium tuberculosis SUMu012]
Length=143
Score = 289 bits (740), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 142/143 (99%), Positives = 143/143 (100%), Gaps = 0/143 (0%)
Query 7 LGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPT 66
+GDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPT
Sbjct 1 MGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPT 60
Query 67 VSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVG 126
VSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVG
Sbjct 61 VSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVG 120
Query 127 ADKEILMQTNWARHISVRQVEVA 149
ADKEILMQTNWARHISVRQVEVA
Sbjct 121 ADKEILMQTNWARHISVRQVEVA 143
>gi|308369572|ref|ZP_07418305.2| antitoxin [Mycobacterium tuberculosis SUMu002]
gi|308327123|gb|EFP15974.1| antitoxin [Mycobacterium tuberculosis SUMu002]
Length=143
Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/143 (99%), Positives = 143/143 (100%), Gaps = 0/143 (0%)
Query 7 LGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPT 66
+GDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPT
Sbjct 1 MGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPT 60
Query 67 VSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVG 126
VSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVG
Sbjct 61 VSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVG 120
Query 127 ADKEILMQTNWARHISVRQVEVA 149
ADKEILMQTNWARHISVRQVEV+
Sbjct 121 ADKEILMQTNWARHISVRQVEVS 143
>gi|336120577|ref|YP_004575363.1| putative Xre family DNA binding protein [Microlunatus phosphovorus
NM-1]
gi|334688375|dbj|BAK37960.1| putative Xre family DNA binding protein [Microlunatus phosphovorus
NM-1]
Length=152
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/85 (51%), Positives = 59/85 (70%), Gaps = 1/85 (1%)
Query 11 LAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGF 70
+ Y+ E +A DP + ED E R +V L++ RK LSQ +VA+RMGV+QPTVSGF
Sbjct 8 FSAYLNERLA-DPELRAGHEDYEARRAIVAELVSRRKALGLSQSQVARRMGVKQPTVSGF 66
Query 71 EKEPSDPKLSTLQRYARALDARLRL 95
E E +DP+LST+ RYARA+DA + +
Sbjct 67 ENEDTDPRLSTMHRYARAVDACISM 91
>gi|297625509|ref|YP_003687272.1| proteins of Bacteriophage / transcription regulator [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|296921274|emb|CBL55826.1| proteins of Bacteriophage / transcription regulator [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length=130
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/78 (40%), Positives = 52/78 (67%), Gaps = 1/78 (1%)
Query 22 DPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLST 81
+P + ED+ + R+L++ ++ +RK L+Q +VA RMGV Q TV+ FE +DP+LS+
Sbjct 14 NPEVRAGYEDSRDRRKLIETMVQVRKDAGLTQQQVADRMGVVQSTVAQFEGS-TDPRLSS 72
Query 82 LQRYARALDARLRLVLEV 99
+QRYARA+ A+ ++
Sbjct 73 VQRYARAVGAKSHFIVST 90
>gi|269957698|ref|YP_003327487.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica
DSM 15894]
gi|269306379|gb|ACZ31929.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica
DSM 15894]
Length=102
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 46/62 (75%), Gaps = 0/62 (0%)
Query 33 EEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDAR 92
E +L+D+L+ RK L+Q +VA+RMGV QPTV+ FE+ ++P LST++RYA A++ R
Sbjct 21 EAHEKLLDSLVRFRKKHGLTQADVAERMGVSQPTVAAFERYDANPTLSTIRRYALAVEVR 80
Query 93 LR 94
LR
Sbjct 81 LR 82
>gi|19553021|ref|NP_601023.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
gi|62390698|ref|YP_226100.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
gi|21324589|dbj|BAB99213.1| Predicted transcriptional regulators [Corynebacterium glutamicum
ATCC 13032]
gi|41326036|emb|CAF20199.1| putative transcriptional regulator [Corynebacterium glutamicum
ATCC 13032]
Length=127
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/58 (52%), Positives = 41/58 (71%), Gaps = 0/58 (0%)
Query 36 RRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARL 93
R +D+L+ALRK +SQ EVA RMGV Q +S FE ++P LST++RYA A+DA +
Sbjct 28 REFLDSLVALRKKAGISQDEVANRMGVSQSAISQFEHYDANPTLSTIRRYALAVDASI 85
>gi|288933192|ref|YP_003437251.1| XRE family transcriptional regulator [Klebsiella variicola At-22]
gi|290511996|ref|ZP_06551364.1| transcriptional Regulator [Klebsiella sp. 1_1_55]
gi|288887921|gb|ADC56239.1| transcriptional regulator, XRE family [Klebsiella variicola At-22]
gi|289775786|gb|EFD83786.1| transcriptional Regulator [Klebsiella sp. 1_1_55]
Length=99
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/74 (46%), Positives = 50/74 (68%), Gaps = 1/74 (1%)
Query 32 AEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDA 91
A E R+ V AL LR+ Q+SQ E+A MGV+QPT++ E+ +DP+LSTL+RY AL
Sbjct 23 AAEIRQSV-ALNLLREELQMSQTEMAAAMGVKQPTIAKMEQADNDPRLSTLKRYIAALGG 81
Query 92 RLRLVLEVPTLREV 105
L + + +PT ++V
Sbjct 82 ELSINVTLPTGKKV 95
>gi|161613417|ref|YP_001587382.1| hypothetical protein SPAB_01131 [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|161362781|gb|ABX66549.1| hypothetical protein SPAB_01131 [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
Length=100
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/59 (53%), Positives = 42/59 (72%), Gaps = 0/59 (0%)
Query 42 LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP 100
L LR+ Q +QVE+A+ +G+RQPTV+G EK D KLSTL+RY A +LRL +E+P
Sbjct 33 LAELREKVQKTQVEMAQALGIRQPTVAGMEKPGRDLKLSTLKRYVEATGGKLRLDVELP 91
>gi|308187400|ref|YP_003931531.1| transcriptional regulator [Pantoea vagans C9-1]
gi|308057910|gb|ADO10082.1| putative transcriptional regulator [Pantoea vagans C9-1]
Length=100
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/59 (53%), Positives = 42/59 (72%), Gaps = 0/59 (0%)
Query 42 LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP 100
L LR+ Q +QVE+A+ +G+ QPTV+G EK D KLSTL+RY A +LRLV+E+P
Sbjct 33 LAELREKVQKTQVEMAQALGITQPTVAGMEKPGRDLKLSTLKRYVDAAGGKLRLVVELP 91
>gi|291617986|ref|YP_003520728.1| hypothetical Protein PANA_2433 [Pantoea ananatis LMG 20103]
gi|291153016|gb|ADD77600.1| Hypothetical Protein PANA_2433 [Pantoea ananatis LMG 20103]
Length=100
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/59 (51%), Positives = 42/59 (72%), Gaps = 0/59 (0%)
Query 42 LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP 100
L LR+ Q +QVE+A+ +G++QPTV+G EK D KLSTL+RY A +LRL +E+P
Sbjct 33 LAELREKVQKTQVEMAQALGIKQPTVAGMEKPGRDLKLSTLKRYVEATGGKLRLDVELP 91
>gi|290508717|ref|ZP_06548088.1| transcriptional regulator [Klebsiella sp. 1_1_55]
gi|289778111|gb|EFD86108.1| transcriptional regulator [Klebsiella sp. 1_1_55]
Length=101
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/59 (51%), Positives = 42/59 (72%), Gaps = 0/59 (0%)
Query 42 LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP 100
L LR+ Q +QVE+A+ +G++QPTV+G EK D KLSTL+RY A +LRL +E+P
Sbjct 34 LAELREKVQKTQVEMAQNLGIKQPTVAGMEKPGRDLKLSTLKRYVEAAGGKLRLDVELP 92
>gi|283836086|ref|ZP_06355827.1| hypothetical protein CIT292_10505 [Citrobacter youngae ATCC 29220]
gi|291068273|gb|EFE06382.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter
youngae ATCC 29220]
Length=99
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/76 (44%), Positives = 48/76 (64%), Gaps = 1/76 (1%)
Query 34 EARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARL 93
E R AL LR+ LSQ E+A MGV+QPT++ E+ +DP+LSTL+RY AL L
Sbjct 24 EVLRQAVALNMLREELNLSQAELASAMGVKQPTIAKMEQADNDPRLSTLKRYVAALGGEL 83
Query 94 RLVLEVPTLREVPTWH 109
+ +++PT + V +H
Sbjct 84 SIDVKLPTGKRV-AFH 98
>gi|296447228|ref|ZP_06889158.1| transcriptional regulator, XRE family [Methylosinus trichosporium
OB3b]
gi|296255287|gb|EFH02384.1| transcriptional regulator, XRE family [Methylosinus trichosporium
OB3b]
Length=96
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/83 (40%), Positives = 47/83 (57%), Gaps = 0/83 (0%)
Query 16 AEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPS 75
A+ +A D +++ + EE LV+++I R +LSQ EVAKRMG + VS E
Sbjct 12 AKRMAEDEAYRAAYDALEEEFALVNSMIEARARSKLSQAEVAKRMGTTESAVSRLESGRG 71
Query 76 DPKLSTLQRYARALDARLRLVLE 98
P TL+RYA A+ RLR+ E
Sbjct 72 KPSTRTLERYAEAVGHRLRITFE 94
>gi|333928854|ref|YP_004502433.1| helix-turn-helix domain-containing protein [Serratia sp. AS12]
gi|333933807|ref|YP_004507385.1| helix-turn-helix domain-containing protein [Serratia sp. AS9]
gi|333475414|gb|AEF47124.1| helix-turn-helix domain protein [Serratia sp. AS9]
gi|333492914|gb|AEF52076.1| helix-turn-helix domain protein [Serratia sp. AS12]
gi|333963010|gb|AEG29783.1| helix-turn-helix domain protein [Serratia sp. AS13]
Length=100
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/60 (49%), Positives = 42/60 (70%), Gaps = 0/60 (0%)
Query 42 LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPT 101
L LR+ +SQVE+AKR+G+ QP+V+ EK S+ KLS+L+RY A+ RL L +E+P
Sbjct 33 LAMLREELAVSQVELAKRLGISQPSVANLEKRGSEIKLSSLKRYIEAMGGRLSLEVELPN 92
>gi|262045260|ref|ZP_06018286.1| xre family toxin-antitoxin system [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259037470|gb|EEW38715.1| xre family toxin-antitoxin system [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length=83
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/74 (45%), Positives = 49/74 (67%), Gaps = 1/74 (1%)
Query 32 AEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDA 91
A E R+ V AL LR+ Q+SQ E+A MGV+QPT++ E+ + P+LSTL+RY AL
Sbjct 7 AAEIRQSV-ALNLLREELQMSQTEMAAAMGVKQPTIAKMEQTDNAPRLSTLKRYIAALGG 65
Query 92 RLRLVLEVPTLREV 105
L + + +PT ++V
Sbjct 66 ELSINVTLPTGKKV 79
>gi|227114559|ref|ZP_03828215.1| hypothetical protein PcarbP_16438 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length=100
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/59 (50%), Positives = 43/59 (73%), Gaps = 0/59 (0%)
Query 42 LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP 100
L LR+ Q +QVE+A+ +G++QPT++G EK D KLSTL+RY A ++LRL +E+P
Sbjct 33 LAELRERVQKTQVEMAQVLGLKQPTIAGMEKPGRDLKLSTLKRYVEATGSKLRLDVELP 91
>gi|296103507|ref|YP_003613653.1| putative transcriptional regulator [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295057966|gb|ADF62704.1| putative transcriptional regulator [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length=99
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/69 (47%), Positives = 45/69 (66%), Gaps = 1/69 (1%)
Query 33 EEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDAR 92
E RR+V AL LR+ +SQ E+A MGV+QPTV+ E+ +DP+LSTL+RY AL
Sbjct 24 EVMRRIV-ALNQLREELNISQTELAAAMGVKQPTVAKIEQPGNDPRLSTLKRYVSALGGE 82
Query 93 LRLVLEVPT 101
L + + +P
Sbjct 83 LSIDVTLPN 91
>gi|253773505|ref|YP_003036336.1| XRE family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254161582|ref|YP_003044690.1| phage N15 gp48-like protein [Escherichia coli B str. REL606]
gi|300917792|ref|ZP_07134436.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia
coli MS 115-1]
10 more sequence titles
Length=94
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/78 (40%), Positives = 44/78 (57%), Gaps = 0/78 (0%)
Query 21 ADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLS 80
A+P K ++A + L LI ++K L+ E+A RMGV QP VS E+ S L+
Sbjct 17 ANPDVKKAYDEATQEEELRAVLIEMKKRAGLTSTEIAARMGVSQPAVSRLERNVSSASLT 76
Query 81 TLQRYARALDARLRLVLE 98
TLQRYA A ++L L+
Sbjct 77 TLQRYAAACGMHIKLSLQ 94
>gi|189009186|ref|YP_001928068.1| putative transcriptional regulator [Klebsiella pneumoniae]
gi|171850727|gb|ACB55466.1| putative transcriptional regulator [Klebsiella pneumoniae]
Length=99
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/65 (47%), Positives = 43/65 (67%), Gaps = 0/65 (0%)
Query 41 ALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP 100
AL LR +SQ E+A MGV+QP+V+ E+ +DP+LSTL+RY +AL L L + +P
Sbjct 31 ALSMLRDELNISQTELAAVMGVKQPSVARMEQADNDPRLSTLKRYVKALGGELSLDVTLP 90
Query 101 TLREV 105
T + V
Sbjct 91 TGKRV 95
>gi|170783251|ref|YP_001711585.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
sepedonicus]
gi|169157821|emb|CAQ03026.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
sepedonicus]
Length=152
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/91 (38%), Positives = 51/91 (57%), Gaps = 2/91 (2%)
Query 38 LVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVL 97
L+D L +R+H LSQ ++ MGV Q TVS FE S+PKL+T++RYA AL+ + +
Sbjct 46 LIDTLRRVREHRSLSQEQLGALMGVSQATVSSFESGASEPKLATIRRYAHALNVVVEHSV 105
Query 98 EV--PTLREVPTWHRLSSYRGSARDHQVRVG 126
+L + TW +S + + R R G
Sbjct 106 RPIDASLSSLFTWTTVSGFITNPRSTSTRAG 136
>gi|167470799|ref|ZP_02335503.1| DNA-binding protein [Yersinia pestis FV-1]
Length=99
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/65 (47%), Positives = 43/65 (67%), Gaps = 0/65 (0%)
Query 41 ALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP 100
L +R+ QLSQ +VA+ MG+ QP V+ E+ +D KL+TL+RY AL +L L +E+P
Sbjct 31 GLQMMREELQLSQKQVAEAMGISQPAVTKLEQRGNDLKLATLKRYVEALGGKLSLDVELP 90
Query 101 TLREV 105
T R V
Sbjct 91 TGRRV 95
>gi|254360480|ref|ZP_04976629.1| possible transcriptional regulator [Mannheimia haemolytica PHL213]
gi|153091020|gb|EDN73025.1| possible transcriptional regulator [Mannheimia haemolytica PHL213]
Length=99
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/80 (39%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query 23 PSFKGTLED-AEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLST 81
P + +ED A+E R + L LR+ LSQ ++A +G+ QP ++ E++ +DP+LST
Sbjct 13 PERRQKVEDMAQEMIREIQ-LSKLREELNLSQQQLATALGISQPAIAKLEQKDNDPRLST 71
Query 82 LQRYARALDARLRLVLEVPT 101
L+RY A+ +L+L +E+PT
Sbjct 72 LKRYIEAMGGKLKLAVELPT 91
>gi|227327175|ref|ZP_03831199.1| helix-turn-helix domain protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length=94
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (41%), Positives = 42/77 (55%), Gaps = 0/77 (0%)
Query 21 ADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLS 80
++P K ED + L LI ++ L+ E+A RMGV QP VS E+ S +S
Sbjct 17 SNPEVKKAYEDETQEEALRAVLIEMKSKSGLTSTEIAARMGVSQPAVSRLERNVSSASIS 76
Query 81 TLQRYARALDARLRLVL 97
TLQRYA A +L+L L
Sbjct 77 TLQRYAAACGMQLKLSL 93
>gi|167471088|ref|ZP_02335792.1| DNA-binding protein [Yersinia pestis FV-1]
Length=99
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/65 (45%), Positives = 43/65 (67%), Gaps = 0/65 (0%)
Query 41 ALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP 100
L +R+ QLSQ +VA+ MG+ QP V+ E+ +D KL+TL+RY A+ +L L +E+P
Sbjct 31 GLQMMREELQLSQKQVAEAMGISQPAVTKLEQRGNDLKLATLKRYVEAMGGKLSLDVELP 90
Query 101 TLREV 105
T R V
Sbjct 91 TGRRV 95
>gi|194337261|ref|YP_002019055.1| XRE family transcriptional regulator [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309738|gb|ACF44438.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme
BU-1]
Length=112
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query 6 PLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQP 65
P+ D Y A ++DP FK + E+ + AL+ R L+Q EVA RMGV QP
Sbjct 9 PVAFDPKAYAAHNSSSDPKFKIAYDALEDEFAALRALLHARTQAGLTQAEVASRMGVSQP 68
Query 66 TVSGFE----KEPSDPKLSTLQRYARALDARLRLVLEVPT 101
++ E K+ P L+TL+RYA A +L + + +P
Sbjct 69 VLARIEASLGKQDHSPSLNTLRRYANACGMKLVIQMVLPN 108
>gi|16082687|ref|NP_395234.1| putative transcriptional regulator [Yersinia pestis CO92]
gi|39980763|ref|NP_951041.1| putative transcriptional regulator [Yersinia pestis KIM]
gi|45478720|ref|NP_995575.1| putative transcriptional regulator [Yersinia pestis biovar Microtus
str. 91001]
46 more sequence titles
Length=99
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/65 (45%), Positives = 43/65 (67%), Gaps = 0/65 (0%)
Query 41 ALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP 100
L +R+ QLSQ +VA+ MG+ QP V+ E+ +D KL+TL+RY A+ +L L +E+P
Sbjct 31 GLQMMREELQLSQKQVAEAMGISQPAVTKLEQRGNDLKLATLKRYVEAMGGKLSLDVELP 90
Query 101 TLREV 105
T R V
Sbjct 91 TGRRV 95
>gi|59889790|emb|CAH19146.1| Transcriptional Regulator [Escherichia coli]
gi|284920054|emb|CBG33111.1| putative transcriptional regulator [Escherichia coli 042]
Length=99
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/69 (43%), Positives = 46/69 (67%), Gaps = 1/69 (1%)
Query 33 EEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDAR 92
EE R+ + AL LR+ +SQ E+A MG++QPT++ E+ +DP+LSTL+RY AL
Sbjct 24 EEMRQTI-ALHQLREELNISQTEMAAAMGIKQPTLAKMEQADNDPRLSTLKRYVAALGGE 82
Query 93 LRLVLEVPT 101
L + +++P
Sbjct 83 LSIDVKLPN 91
>gi|218703535|ref|YP_002411054.1| transcriptional regulator [Escherichia coli UMN026]
gi|293403365|ref|ZP_06647456.1| transcriptional regulator [Escherichia coli FVEC1412]
gi|298378976|ref|ZP_06988857.1| transcriptional Regulator [Escherichia coli FVEC1302]
gi|300899462|ref|ZP_07117710.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia
coli MS 198-1]
gi|218430632|emb|CAR11498.1| Transcriptional Regulator [Escherichia coli UMN026]
gi|291429218|gb|EFF02238.1| transcriptional regulator [Escherichia coli FVEC1412]
gi|298280089|gb|EFI21593.1| transcriptional Regulator [Escherichia coli FVEC1302]
gi|300356941|gb|EFJ72811.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia
coli MS 198-1]
Length=99
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/69 (43%), Positives = 46/69 (67%), Gaps = 1/69 (1%)
Query 33 EEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDAR 92
EE R+ + AL LR+ +SQ E+A MG++QPT++ E+ +DP+LSTL+RY AL
Sbjct 24 EEMRQTI-ALHQLREELNISQTEMAAAMGIKQPTLAKMEQADNDPRLSTLKRYVAALGGE 82
Query 93 LRLVLEVPT 101
L + +++P
Sbjct 83 LSIDVKLPN 91
>gi|269103380|ref|ZP_06156077.1| putative lipoprotein [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268163278|gb|EEZ41774.1| putative lipoprotein [Photobacterium damselae subsp. damselae
CIP 102761]
Length=92
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/62 (38%), Positives = 43/62 (70%), Gaps = 0/62 (0%)
Query 44 ALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLR 103
A+R+ +++Q E+A+ MG+ QP+V E+ +D KLST++RY A+ ++ + +E+PT +
Sbjct 27 AIREELEITQAELARNMGISQPSVVAIEQRGNDVKLSTIKRYIEAMGGKMSINIELPTGK 86
Query 104 EV 105
V
Sbjct 87 HV 88
>gi|331650584|ref|ZP_08351653.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia
coli M605]
gi|323948730|gb|EGB44631.1| helix-turn-helix protein [Escherichia coli H252]
gi|331040555|gb|EGI12716.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia
coli M605]
Length=99
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/92 (37%), Positives = 53/92 (58%), Gaps = 1/92 (1%)
Query 15 IAEAIAA-DPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKE 73
+ E IAA P + ++ + L L +R+ QLSQ +VA MG+ QP V+ E+
Sbjct 4 LEEVIAAQSPESQAIIKAMADEMILETGLQMMREELQLSQKQVADAMGISQPAVTQLEQR 63
Query 74 PSDPKLSTLQRYARALDARLRLVLEVPTLREV 105
+D KL+TL+RY A+ +L L +E+PT + V
Sbjct 64 GNDLKLATLKRYVEAMGGKLSLDVELPTGKRV 95
>gi|333370136|ref|ZP_08462206.1| XRE family transcriptional regulator [Psychrobacter sp. 1501(2011)]
gi|332968126|gb|EGK07210.1| XRE family transcriptional regulator [Psychrobacter sp. 1501(2011)]
Length=100
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/64 (38%), Positives = 45/64 (71%), Gaps = 0/64 (0%)
Query 38 LVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVL 97
L + L +R+ ++SQ E+AK +G++QP++S E +D K+ST+++Y A+ +LR+ +
Sbjct 29 LENQLYRIREELEISQKELAKTLGIKQPSLSAIENRGNDLKISTMKKYVEAMGGKLRIDV 88
Query 98 EVPT 101
E+PT
Sbjct 89 ELPT 92
>gi|293393845|ref|ZP_06638152.1| transcriptional regulator [Serratia odorifera DSM 4582]
gi|291423672|gb|EFE96894.1| transcriptional regulator [Serratia odorifera DSM 4582]
Length=99
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/69 (44%), Positives = 46/69 (67%), Gaps = 1/69 (1%)
Query 32 AEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDA 91
A+E R+ + AL +R+ +SQ ++A MG++QP V+ EK +DPKLSTL+RY +AL
Sbjct 23 ADEIRQEI-ALAKIREELNISQKQLADAMGIKQPAVAKMEKVDNDPKLSTLKRYVKALGG 81
Query 92 RLRLVLEVP 100
L L + +P
Sbjct 82 ELSLDVTLP 90
>gi|93004830|ref|YP_579234.1| XRE family transcriptional regulator [Psychrobacter cryohalolentis
K5]
gi|92395392|gb|ABE76295.1| transcriptional regulator, XRE family [Psychrobacter cryohalolentis
K5]
Length=100
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/64 (38%), Positives = 45/64 (71%), Gaps = 0/64 (0%)
Query 38 LVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVL 97
L + L +R+ ++SQ E+A+ MG++QP++S E +D K+ST+++Y A+ +LR+ +
Sbjct 29 LENQLSRIREELEISQKELAQTMGIKQPSLSAIENRGNDLKISTMKKYVEAMGGKLRIDV 88
Query 98 EVPT 101
E+PT
Sbjct 89 ELPT 92
>gi|300949953|ref|ZP_07163909.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia
coli MS 116-1]
gi|300450681|gb|EFK14301.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia
coli MS 116-1]
gi|324020203|gb|EGB89422.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia
coli MS 117-3]
Length=99
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/88 (38%), Positives = 51/88 (58%), Gaps = 1/88 (1%)
Query 15 IAEAIAA-DPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKE 73
+ E IAA P + ++ + L L +R+ QLSQ +VA MG+ QP V+ E+
Sbjct 4 LEEVIAAQSPESQAIIKAMADEMILETGLQMMREELQLSQKQVADAMGISQPAVTQLEQR 63
Query 74 PSDPKLSTLQRYARALDARLRLVLEVPT 101
+D KL+TL+RY A+ +L L +E+PT
Sbjct 64 GNDLKLATLKRYVEAMGGKLSLDVELPT 91
>gi|251787931|ref|YP_003002652.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
gi|247536552|gb|ACT05173.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
Length=94
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/82 (42%), Positives = 45/82 (55%), Gaps = 1/82 (1%)
Query 16 AEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPS 75
AEA++ P K ED + L LI ++ L+ E+A RMGV QP VS E+ S
Sbjct 13 AEALS-HPEVKKAYEDETQEEALRAVLIEMKSRSGLTSTEIAARMGVSQPAVSRLERNVS 71
Query 76 DPKLSTLQRYARALDARLRLVL 97
+STLQRYA A +L+L L
Sbjct 72 SASISTLQRYAAACGMQLKLSL 93
>gi|318062226|ref|ZP_07980947.1| proteins of Bacteriophage / transcription regulator [Streptomyces
sp. SA3_actG]
gi|318078648|ref|ZP_07985980.1| proteins of Bacteriophage / transcription regulator [Streptomyces
sp. SA3_actF]
Length=123
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/58 (49%), Positives = 39/58 (68%), Gaps = 0/58 (0%)
Query 38 LVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRL 95
LV+ L+ RK C ++Q +VA+ M Q VS FE+ DP+LST+ RYARA+ +LRL
Sbjct 31 LVETLVKHRKKCGITQKQVARHMETTQSAVSDFERLGGDPRLSTVMRYARAVGLKLRL 88
>gi|254447114|ref|ZP_05060581.1| transcriptional regulator, XRE family [gamma proteobacterium
HTCC5015]
gi|198263253|gb|EDY87531.1| transcriptional regulator, XRE family [gamma proteobacterium
HTCC5015]
Length=103
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/84 (39%), Positives = 48/84 (58%), Gaps = 0/84 (0%)
Query 20 AADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKL 79
A DP + E L L +R + +QVE+A+ +G++QPTV+G EK D KL
Sbjct 14 AEDPKIVADAKAKAETILLNIHLAEIRALMEKTQVEMAEALGIKQPTVAGMEKAGKDVKL 73
Query 80 STLQRYARALDARLRLVLEVPTLR 103
S+L+RY A ++RL +E+P R
Sbjct 74 SSLKRYVEAAGGKVRLDIELPDGR 97
>gi|302520968|ref|ZP_07273310.1| predicted protein [Streptomyces sp. SPB78]
gi|302429863|gb|EFL01679.1| predicted protein [Streptomyces sp. SPB78]
Length=148
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/58 (49%), Positives = 39/58 (68%), Gaps = 0/58 (0%)
Query 38 LVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRL 95
LV+ L+ RK C ++Q +VA+ M Q VS FE+ DP+LST+ RYARA+ +LRL
Sbjct 56 LVETLVKHRKKCGITQKQVARHMETTQSAVSDFERLGGDPRLSTVMRYARAVGLKLRL 113
>gi|242240939|ref|YP_002989120.1| XRE family transcriptional regulator [Dickeya dadantii Ech703]
gi|242132996|gb|ACS87298.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703]
Length=94
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/75 (42%), Positives = 40/75 (54%), Gaps = 0/75 (0%)
Query 23 PSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTL 82
P K ED + L LI ++ L+ E+A RMGV QP VS E+ S +STL
Sbjct 19 PEVKKAYEDETQEEALRAVLIEMKSRSGLTSTEIAARMGVSQPAVSRLERNVSSASISTL 78
Query 83 QRYARALDARLRLVL 97
QRYA A +L+L L
Sbjct 79 QRYAAACGMQLKLSL 93
>gi|156933285|ref|YP_001437201.1| hypothetical protein ESA_01097 [Cronobacter sakazakii ATCC BAA-894]
gi|260598604|ref|YP_003211175.1| hypothetical protein CTU_28120 [Cronobacter turicensis z3032]
gi|156531539|gb|ABU76365.1| hypothetical protein ESA_01097 [Cronobacter sakazakii ATCC BAA-894]
gi|260217781|emb|CBA32230.1| hypothetical protein CTU_28120 [Cronobacter turicensis z3032]
Length=99
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/81 (38%), Positives = 49/81 (61%), Gaps = 0/81 (0%)
Query 20 AADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKL 79
A P + +E+ L L ALR+ +SQ E+A++MG+ QP+V+ E+ ++ K+
Sbjct 10 AQTPEARARIEEKTAQLLLETHLYALREALSVSQTEMARQMGIAQPSVAAIEQRGNEMKI 69
Query 80 STLQRYARALDARLRLVLEVP 100
STL+RY AL +RL +E+P
Sbjct 70 STLKRYVEALGGTVRLDVELP 90
>gi|239906136|ref|YP_002952875.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
gi|239796000|dbj|BAH74989.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
Length=107
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/84 (39%), Positives = 48/84 (58%), Gaps = 1/84 (1%)
Query 15 IAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEP 74
+ E + ADP F+ E L++A+I R ++Q +VAK MGV QP V+ E
Sbjct 14 VRERMMADPEFRKEYGALGEEFALIEAMIEARTQANMTQADVAKAMGVSQPRVARIES-G 72
Query 75 SDPKLSTLQRYARALDARLRLVLE 98
+ L TL+RYA+A RL++V+E
Sbjct 73 KNVSLETLRRYAKATGGRLKIVIE 96
>gi|152994699|ref|YP_001339534.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1]
gi|150835623|gb|ABR69599.1| putative transcriptional regulator, XRE family [Marinomonas sp.
MWYL1]
Length=100
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/59 (43%), Positives = 40/59 (68%), Gaps = 0/59 (0%)
Query 42 LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP 100
L LR+ Q++Q ++A +GV+QPT++G E++ D KLSTL+RY +L L +E+P
Sbjct 33 LAQLRERMQITQEDIANTLGVKQPTIAGMERKGRDVKLSTLKRYVEGAGGKLTLDVELP 91
>gi|157372070|ref|YP_001480059.1| XRE family transcriptional regulator [Serratia proteamaculans
568]
gi|157323834|gb|ABV42931.1| transcriptional regulator, XRE family [Serratia proteamaculans
568]
Length=100
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 41/60 (69%), Gaps = 0/60 (0%)
Query 42 LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPT 101
L LR+ +SQVE+AKR+G+ QP+V+ EK S+ KLS+L+RY A+ L L +++P
Sbjct 33 LAMLREELAVSQVELAKRLGISQPSVANLEKRGSEIKLSSLKRYIEAMGGTLSLEVQLPN 92
>gi|317048706|ref|YP_004116354.1| XRE family transcriptional regulator [Pantoea sp. At-9b]
gi|316950323|gb|ADU69798.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
Length=100
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/59 (50%), Positives = 40/59 (68%), Gaps = 0/59 (0%)
Query 42 LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP 100
L LR+ +QVE+AK +GV+QPTV+ EK D KLSTL+RY A +LR+ +E+P
Sbjct 33 LAELREKVDKTQVEMAKSLGVKQPTVAEMEKPGRDVKLSTLKRYVEAAGGKLRVDVELP 91
>gi|332850503|ref|ZP_08432806.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
6013150]
gi|332730642|gb|EGJ61955.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
6013150]
Length=100
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/68 (34%), Positives = 47/68 (70%), Gaps = 0/68 (0%)
Query 38 LVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVL 97
L + L +R+ ++SQ E+A+ +G++QP++S E +D K+ST+++Y A+ +LR+ +
Sbjct 29 LENQLYLIREELEISQKELAETLGIKQPSLSAIENRGNDLKISTMKKYVEAMGGKLRIDV 88
Query 98 EVPTLREV 105
E+PT + +
Sbjct 89 ELPTGKHI 96
>gi|293611472|ref|ZP_06693766.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292826198|gb|EFF84569.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length=100
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/68 (34%), Positives = 47/68 (70%), Gaps = 0/68 (0%)
Query 38 LVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVL 97
L + L +R+ ++SQ E+A+ +G++QP++S E +D K+ST+++Y A+ +LR+ +
Sbjct 29 LENQLYLIREELEISQKELAETLGIKQPSLSAIENRGNDLKISTMKKYVEAMGGKLRIDV 88
Query 98 EVPTLREV 105
E+PT + +
Sbjct 89 ELPTGKHI 96
>gi|227327343|ref|ZP_03831367.1| hypothetical protein PcarcW_08483 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length=100
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/59 (50%), Positives = 42/59 (72%), Gaps = 0/59 (0%)
Query 42 LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP 100
L LR+ Q +QVE+A+ +G++QPTV+ EK D KLSTL+RY A ++LRL +E+P
Sbjct 33 LAELRERVQKTQVEMAQVLGLKQPTVAVMEKPGRDLKLSTLKRYVEATGSKLRLDVELP 91
Lambda K H
0.319 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130023393564
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40