BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1956

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609093|ref|NP_216472.1|  transcriptional regulatory protein ...   303    5e-81
gi|306784717|ref|ZP_07423039.1|  antitoxin [Mycobacterium tubercu...   302    1e-80
gi|289574639|ref|ZP_06454866.1|  antitoxin, transcriptional regul...   301    2e-80
gi|308403035|ref|ZP_07493693.2|  antitoxin [Mycobacterium tubercu...   289    9e-77
gi|308369572|ref|ZP_07418305.2|  antitoxin [Mycobacterium tubercu...   288    2e-76
gi|336120577|ref|YP_004575363.1|  putative Xre family DNA binding...  84.7    4e-15
gi|297625509|ref|YP_003687272.1|  proteins of Bacteriophage / tra...  66.2    1e-09
gi|269957698|ref|YP_003327487.1|  XRE family transcriptional regu...  65.1    3e-09
gi|19553021|ref|NP_601023.1|  transcriptional regulator [Coryneba...  63.5    9e-09
gi|288933192|ref|YP_003437251.1|  XRE family transcriptional regu...  63.2    1e-08
gi|161613417|ref|YP_001587382.1|  hypothetical protein SPAB_01131...  63.2    1e-08
gi|308187400|ref|YP_003931531.1|  transcriptional regulator [Pant...  62.8    2e-08
gi|291617986|ref|YP_003520728.1|  hypothetical Protein PANA_2433 ...  62.4    2e-08
gi|290508717|ref|ZP_06548088.1|  transcriptional regulator [Klebs...  62.0    3e-08
gi|283836086|ref|ZP_06355827.1|  hypothetical protein CIT292_1050...  61.2    5e-08
gi|296447228|ref|ZP_06889158.1|  transcriptional regulator, XRE f...  60.5    8e-08
gi|333928854|ref|YP_004502433.1|  helix-turn-helix domain-contain...  60.5    9e-08
gi|262045260|ref|ZP_06018286.1|  xre family toxin-antitoxin syste...  60.1    1e-07
gi|227114559|ref|ZP_03828215.1|  hypothetical protein PcarbP_1643...  60.1    1e-07
gi|296103507|ref|YP_003613653.1|  putative transcriptional regula...  59.7    1e-07
gi|253773505|ref|YP_003036336.1|  XRE family transcriptional regu...  59.3    2e-07
gi|189009186|ref|YP_001928068.1|  putative transcriptional regula...  59.3    2e-07
gi|170783251|ref|YP_001711585.1|  putative DNA-binding protein [C...  59.3    2e-07
gi|167470799|ref|ZP_02335503.1|  DNA-binding protein [Yersinia pe...  58.9    3e-07
gi|254360480|ref|ZP_04976629.1|  possible transcriptional regulat...  58.5    3e-07
gi|227327175|ref|ZP_03831199.1|  helix-turn-helix domain protein ...  58.5    3e-07
gi|167471088|ref|ZP_02335792.1|  DNA-binding protein [Yersinia pe...  58.2    4e-07
gi|194337261|ref|YP_002019055.1|  XRE family transcriptional regu...  58.2    4e-07
gi|16082687|ref|NP_395234.1|  putative transcriptional regulator ...  58.2    4e-07
gi|59889790|emb|CAH19146.1|  Transcriptional Regulator [Escherich...  58.2    5e-07
gi|218703535|ref|YP_002411054.1|  transcriptional regulator [Esch...  57.8    5e-07
gi|269103380|ref|ZP_06156077.1|  putative lipoprotein [Photobacte...  57.8    5e-07
gi|331650584|ref|ZP_08351653.1|  toxin-antitoxin system, antitoxi...  57.8    6e-07
gi|333370136|ref|ZP_08462206.1|  XRE family transcriptional regul...  57.4    6e-07
gi|293393845|ref|ZP_06638152.1|  transcriptional regulator [Serra...  57.4    7e-07
gi|93004830|ref|YP_579234.1|  XRE family transcriptional regulato...  57.4    7e-07
gi|300949953|ref|ZP_07163909.1|  toxin-antitoxin system, antitoxi...  57.4    7e-07
gi|251787931|ref|YP_003002652.1|  XRE family transcriptional regu...  57.4    7e-07
gi|318062226|ref|ZP_07980947.1|  proteins of Bacteriophage / tran...  57.0    8e-07
gi|254447114|ref|ZP_05060581.1|  transcriptional regulator, XRE f...  57.0    9e-07
gi|302520968|ref|ZP_07273310.1|  predicted protein [Streptomyces ...  57.0    9e-07
gi|242240939|ref|YP_002989120.1|  XRE family transcriptional regu...  57.0    1e-06
gi|156933285|ref|YP_001437201.1|  hypothetical protein ESA_01097 ...  57.0    1e-06
gi|239906136|ref|YP_002952875.1|  Xre family DNA-binding protein ...  56.6    1e-06
gi|152994699|ref|YP_001339534.1|  XRE family transcriptional regu...  56.6    1e-06
gi|157372070|ref|YP_001480059.1|  XRE family transcriptional regu...  56.6    1e-06
gi|317048706|ref|YP_004116354.1|  XRE family transcriptional regu...  56.6    1e-06
gi|332850503|ref|ZP_08432806.1|  DNA-binding helix-turn-helix pro...  56.6    1e-06
gi|293611472|ref|ZP_06693766.1|  conserved hypothetical protein [...  56.6    1e-06
gi|227327343|ref|ZP_03831367.1|  hypothetical protein PcarcW_0848...  56.6    1e-06


>gi|15609093|ref|NP_216472.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Rv]
 gi|15841426|ref|NP_336463.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551]
 gi|31793148|ref|NP_855641.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
 61 more sequence titles
 Length=149

 Score =  303 bits (777),  Expect = 5e-81, Method: Compositional matrix adjust.
 Identities = 149/149 (100%), Positives = 149/149 (100%), Gaps = 0/149 (0%)

Query  1    MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM  60
            MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM
Sbjct  1    MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM  60

Query  61   GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD  120
            GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD
Sbjct  61   GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD  120

Query  121  HQVRVGADKEILMQTNWARHISVRQVEVA  149
            HQVRVGADKEILMQTNWARHISVRQVEVA
Sbjct  121  HQVRVGADKEILMQTNWARHISVRQVEVA  149


>gi|306784717|ref|ZP_07423039.1| antitoxin [Mycobacterium tuberculosis SUMu003]
 gi|306789074|ref|ZP_07427396.1| antitoxin [Mycobacterium tuberculosis SUMu004]
 gi|306793409|ref|ZP_07431711.1| antitoxin [Mycobacterium tuberculosis SUMu005]
 11 more sequence titles
 Length=149

 Score =  302 bits (774),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 148/149 (99%), Positives = 149/149 (100%), Gaps = 0/149 (0%)

Query  1    MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM  60
            MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM
Sbjct  1    MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM  60

Query  61   GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD  120
            GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD
Sbjct  61   GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD  120

Query  121  HQVRVGADKEILMQTNWARHISVRQVEVA  149
            HQVRVGADKEILMQTNWARHISVRQVEV+
Sbjct  121  HQVRVGADKEILMQTNWARHISVRQVEVS  149


>gi|289574639|ref|ZP_06454866.1| antitoxin, transcriptional regulator [Mycobacterium tuberculosis 
K85]
 gi|289539070|gb|EFD43648.1| antitoxin, transcriptional regulator [Mycobacterium tuberculosis 
K85]
Length=149

 Score =  301 bits (772),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 148/149 (99%), Positives = 149/149 (100%), Gaps = 0/149 (0%)

Query  1    MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM  60
            MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM
Sbjct  1    MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRM  60

Query  61   GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD  120
            GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD
Sbjct  61   GVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARD  120

Query  121  HQVRVGADKEILMQTNWARHISVRQVEVA  149
            HQVRVGADKEILMQTNWAR+ISVRQVEVA
Sbjct  121  HQVRVGADKEILMQTNWARYISVRQVEVA  149


>gi|308403035|ref|ZP_07493693.2| antitoxin [Mycobacterium tuberculosis SUMu012]
 gi|308365832|gb|EFP54683.1| antitoxin [Mycobacterium tuberculosis SUMu012]
Length=143

 Score =  289 bits (740),  Expect = 9e-77, Method: Compositional matrix adjust.
 Identities = 142/143 (99%), Positives = 143/143 (100%), Gaps = 0/143 (0%)

Query  7    LGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPT  66
            +GDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPT
Sbjct  1    MGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPT  60

Query  67   VSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVG  126
            VSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVG
Sbjct  61   VSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVG  120

Query  127  ADKEILMQTNWARHISVRQVEVA  149
            ADKEILMQTNWARHISVRQVEVA
Sbjct  121  ADKEILMQTNWARHISVRQVEVA  143


>gi|308369572|ref|ZP_07418305.2| antitoxin [Mycobacterium tuberculosis SUMu002]
 gi|308327123|gb|EFP15974.1| antitoxin [Mycobacterium tuberculosis SUMu002]
Length=143

 Score =  288 bits (737),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 141/143 (99%), Positives = 143/143 (100%), Gaps = 0/143 (0%)

Query  7    LGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPT  66
            +GDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPT
Sbjct  1    MGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPT  60

Query  67   VSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVG  126
            VSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVG
Sbjct  61   VSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVG  120

Query  127  ADKEILMQTNWARHISVRQVEVA  149
            ADKEILMQTNWARHISVRQVEV+
Sbjct  121  ADKEILMQTNWARHISVRQVEVS  143


>gi|336120577|ref|YP_004575363.1| putative Xre family DNA binding protein [Microlunatus phosphovorus 
NM-1]
 gi|334688375|dbj|BAK37960.1| putative Xre family DNA binding protein [Microlunatus phosphovorus 
NM-1]
Length=152

 Score = 84.7 bits (208),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 43/85 (51%), Positives = 59/85 (70%), Gaps = 1/85 (1%)

Query  11  LAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGF  70
            + Y+ E +A DP  +   ED E  R +V  L++ RK   LSQ +VA+RMGV+QPTVSGF
Sbjct  8   FSAYLNERLA-DPELRAGHEDYEARRAIVAELVSRRKALGLSQSQVARRMGVKQPTVSGF  66

Query  71  EKEPSDPKLSTLQRYARALDARLRL  95
           E E +DP+LST+ RYARA+DA + +
Sbjct  67  ENEDTDPRLSTMHRYARAVDACISM  91


>gi|297625509|ref|YP_003687272.1| proteins of Bacteriophage / transcription regulator [Propionibacterium 
freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921274|emb|CBL55826.1| proteins of Bacteriophage / transcription regulator [Propionibacterium 
freudenreichii subsp. shermanii CIRM-BIA1]
Length=130

 Score = 66.2 bits (160),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 31/78 (40%), Positives = 52/78 (67%), Gaps = 1/78 (1%)

Query  22  DPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLST  81
           +P  +   ED+ + R+L++ ++ +RK   L+Q +VA RMGV Q TV+ FE   +DP+LS+
Sbjct  14  NPEVRAGYEDSRDRRKLIETMVQVRKDAGLTQQQVADRMGVVQSTVAQFEGS-TDPRLSS  72

Query  82  LQRYARALDARLRLVLEV  99
           +QRYARA+ A+   ++  
Sbjct  73  VQRYARAVGAKSHFIVST  90


>gi|269957698|ref|YP_003327487.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica 
DSM 15894]
 gi|269306379|gb|ACZ31929.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica 
DSM 15894]
Length=102

 Score = 65.1 bits (157),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 46/62 (75%), Gaps = 0/62 (0%)

Query  33  EEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDAR  92
           E   +L+D+L+  RK   L+Q +VA+RMGV QPTV+ FE+  ++P LST++RYA A++ R
Sbjct  21  EAHEKLLDSLVRFRKKHGLTQADVAERMGVSQPTVAAFERYDANPTLSTIRRYALAVEVR  80

Query  93  LR  94
           LR
Sbjct  81  LR  82


>gi|19553021|ref|NP_601023.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|62390698|ref|YP_226100.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|21324589|dbj|BAB99213.1| Predicted transcriptional regulators [Corynebacterium glutamicum 
ATCC 13032]
 gi|41326036|emb|CAF20199.1| putative transcriptional regulator [Corynebacterium glutamicum 
ATCC 13032]
Length=127

 Score = 63.5 bits (153),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 30/58 (52%), Positives = 41/58 (71%), Gaps = 0/58 (0%)

Query  36  RRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARL  93
           R  +D+L+ALRK   +SQ EVA RMGV Q  +S FE   ++P LST++RYA A+DA +
Sbjct  28  REFLDSLVALRKKAGISQDEVANRMGVSQSAISQFEHYDANPTLSTIRRYALAVDASI  85


>gi|288933192|ref|YP_003437251.1| XRE family transcriptional regulator [Klebsiella variicola At-22]
 gi|290511996|ref|ZP_06551364.1| transcriptional Regulator [Klebsiella sp. 1_1_55]
 gi|288887921|gb|ADC56239.1| transcriptional regulator, XRE family [Klebsiella variicola At-22]
 gi|289775786|gb|EFD83786.1| transcriptional Regulator [Klebsiella sp. 1_1_55]
Length=99

 Score = 63.2 bits (152),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 34/74 (46%), Positives = 50/74 (68%), Gaps = 1/74 (1%)

Query  32   AEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDA  91
            A E R+ V AL  LR+  Q+SQ E+A  MGV+QPT++  E+  +DP+LSTL+RY  AL  
Sbjct  23   AAEIRQSV-ALNLLREELQMSQTEMAAAMGVKQPTIAKMEQADNDPRLSTLKRYIAALGG  81

Query  92   RLRLVLEVPTLREV  105
             L + + +PT ++V
Sbjct  82   ELSINVTLPTGKKV  95


>gi|161613417|ref|YP_001587382.1| hypothetical protein SPAB_01131 [Salmonella enterica subsp. enterica 
serovar Paratyphi B str. SPB7]
 gi|161362781|gb|ABX66549.1| hypothetical protein SPAB_01131 [Salmonella enterica subsp. enterica 
serovar Paratyphi B str. SPB7]
Length=100

 Score = 63.2 bits (152),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 31/59 (53%), Positives = 42/59 (72%), Gaps = 0/59 (0%)

Query  42  LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP  100
           L  LR+  Q +QVE+A+ +G+RQPTV+G EK   D KLSTL+RY  A   +LRL +E+P
Sbjct  33  LAELREKVQKTQVEMAQALGIRQPTVAGMEKPGRDLKLSTLKRYVEATGGKLRLDVELP  91


>gi|308187400|ref|YP_003931531.1| transcriptional regulator [Pantoea vagans C9-1]
 gi|308057910|gb|ADO10082.1| putative transcriptional regulator [Pantoea vagans C9-1]
Length=100

 Score = 62.8 bits (151),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 31/59 (53%), Positives = 42/59 (72%), Gaps = 0/59 (0%)

Query  42  LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP  100
           L  LR+  Q +QVE+A+ +G+ QPTV+G EK   D KLSTL+RY  A   +LRLV+E+P
Sbjct  33  LAELREKVQKTQVEMAQALGITQPTVAGMEKPGRDLKLSTLKRYVDAAGGKLRLVVELP  91


>gi|291617986|ref|YP_003520728.1| hypothetical Protein PANA_2433 [Pantoea ananatis LMG 20103]
 gi|291153016|gb|ADD77600.1| Hypothetical Protein PANA_2433 [Pantoea ananatis LMG 20103]
Length=100

 Score = 62.4 bits (150),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 30/59 (51%), Positives = 42/59 (72%), Gaps = 0/59 (0%)

Query  42  LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP  100
           L  LR+  Q +QVE+A+ +G++QPTV+G EK   D KLSTL+RY  A   +LRL +E+P
Sbjct  33  LAELREKVQKTQVEMAQALGIKQPTVAGMEKPGRDLKLSTLKRYVEATGGKLRLDVELP  91


>gi|290508717|ref|ZP_06548088.1| transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289778111|gb|EFD86108.1| transcriptional regulator [Klebsiella sp. 1_1_55]
Length=101

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 30/59 (51%), Positives = 42/59 (72%), Gaps = 0/59 (0%)

Query  42  LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP  100
           L  LR+  Q +QVE+A+ +G++QPTV+G EK   D KLSTL+RY  A   +LRL +E+P
Sbjct  34  LAELREKVQKTQVEMAQNLGIKQPTVAGMEKPGRDLKLSTLKRYVEAAGGKLRLDVELP  92


>gi|283836086|ref|ZP_06355827.1| hypothetical protein CIT292_10505 [Citrobacter youngae ATCC 29220]
 gi|291068273|gb|EFE06382.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter 
youngae ATCC 29220]
Length=99

 Score = 61.2 bits (147),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 33/76 (44%), Positives = 48/76 (64%), Gaps = 1/76 (1%)

Query  34   EARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARL  93
            E  R   AL  LR+   LSQ E+A  MGV+QPT++  E+  +DP+LSTL+RY  AL   L
Sbjct  24   EVLRQAVALNMLREELNLSQAELASAMGVKQPTIAKMEQADNDPRLSTLKRYVAALGGEL  83

Query  94   RLVLEVPTLREVPTWH  109
             + +++PT + V  +H
Sbjct  84   SIDVKLPTGKRV-AFH  98


>gi|296447228|ref|ZP_06889158.1| transcriptional regulator, XRE family [Methylosinus trichosporium 
OB3b]
 gi|296255287|gb|EFH02384.1| transcriptional regulator, XRE family [Methylosinus trichosporium 
OB3b]
Length=96

 Score = 60.5 bits (145),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 33/83 (40%), Positives = 47/83 (57%), Gaps = 0/83 (0%)

Query  16  AEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPS  75
           A+ +A D +++   +  EE   LV+++I  R   +LSQ EVAKRMG  +  VS  E    
Sbjct  12  AKRMAEDEAYRAAYDALEEEFALVNSMIEARARSKLSQAEVAKRMGTTESAVSRLESGRG  71

Query  76  DPKLSTLQRYARALDARLRLVLE  98
            P   TL+RYA A+  RLR+  E
Sbjct  72  KPSTRTLERYAEAVGHRLRITFE  94


>gi|333928854|ref|YP_004502433.1| helix-turn-helix domain-containing protein [Serratia sp. AS12]
 gi|333933807|ref|YP_004507385.1| helix-turn-helix domain-containing protein [Serratia sp. AS9]
 gi|333475414|gb|AEF47124.1| helix-turn-helix domain protein [Serratia sp. AS9]
 gi|333492914|gb|AEF52076.1| helix-turn-helix domain protein [Serratia sp. AS12]
 gi|333963010|gb|AEG29783.1| helix-turn-helix domain protein [Serratia sp. AS13]
Length=100

 Score = 60.5 bits (145),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 29/60 (49%), Positives = 42/60 (70%), Gaps = 0/60 (0%)

Query  42   LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPT  101
            L  LR+   +SQVE+AKR+G+ QP+V+  EK  S+ KLS+L+RY  A+  RL L +E+P 
Sbjct  33   LAMLREELAVSQVELAKRLGISQPSVANLEKRGSEIKLSSLKRYIEAMGGRLSLEVELPN  92


>gi|262045260|ref|ZP_06018286.1| xre family toxin-antitoxin system [Klebsiella pneumoniae subsp. 
rhinoscleromatis ATCC 13884]
 gi|259037470|gb|EEW38715.1| xre family toxin-antitoxin system [Klebsiella pneumoniae subsp. 
rhinoscleromatis ATCC 13884]
Length=83

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 33/74 (45%), Positives = 49/74 (67%), Gaps = 1/74 (1%)

Query  32   AEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDA  91
            A E R+ V AL  LR+  Q+SQ E+A  MGV+QPT++  E+  + P+LSTL+RY  AL  
Sbjct  7    AAEIRQSV-ALNLLREELQMSQTEMAAAMGVKQPTIAKMEQTDNAPRLSTLKRYIAALGG  65

Query  92   RLRLVLEVPTLREV  105
             L + + +PT ++V
Sbjct  66   ELSINVTLPTGKKV  79


>gi|227114559|ref|ZP_03828215.1| hypothetical protein PcarbP_16438 [Pectobacterium carotovorum 
subsp. brasiliensis PBR1692]
Length=100

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 29/59 (50%), Positives = 43/59 (73%), Gaps = 0/59 (0%)

Query  42  LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP  100
           L  LR+  Q +QVE+A+ +G++QPT++G EK   D KLSTL+RY  A  ++LRL +E+P
Sbjct  33  LAELRERVQKTQVEMAQVLGLKQPTIAGMEKPGRDLKLSTLKRYVEATGSKLRLDVELP  91


>gi|296103507|ref|YP_003613653.1| putative transcriptional regulator [Enterobacter cloacae subsp. 
cloacae ATCC 13047]
 gi|295057966|gb|ADF62704.1| putative transcriptional regulator [Enterobacter cloacae subsp. 
cloacae ATCC 13047]
Length=99

 Score = 59.7 bits (143),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 32/69 (47%), Positives = 45/69 (66%), Gaps = 1/69 (1%)

Query  33   EEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDAR  92
            E  RR+V AL  LR+   +SQ E+A  MGV+QPTV+  E+  +DP+LSTL+RY  AL   
Sbjct  24   EVMRRIV-ALNQLREELNISQTELAAAMGVKQPTVAKIEQPGNDPRLSTLKRYVSALGGE  82

Query  93   LRLVLEVPT  101
            L + + +P 
Sbjct  83   LSIDVTLPN  91


>gi|253773505|ref|YP_003036336.1| XRE family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS 
AG']
 gi|254161582|ref|YP_003044690.1| phage N15 gp48-like protein [Escherichia coli B str. REL606]
 gi|300917792|ref|ZP_07134436.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia 
coli MS 115-1]
 10 more sequence titles
 Length=94

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 31/78 (40%), Positives = 44/78 (57%), Gaps = 0/78 (0%)

Query  21  ADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLS  80
           A+P  K   ++A +   L   LI ++K   L+  E+A RMGV QP VS  E+  S   L+
Sbjct  17  ANPDVKKAYDEATQEEELRAVLIEMKKRAGLTSTEIAARMGVSQPAVSRLERNVSSASLT  76

Query  81  TLQRYARALDARLRLVLE  98
           TLQRYA A    ++L L+
Sbjct  77  TLQRYAAACGMHIKLSLQ  94


>gi|189009186|ref|YP_001928068.1| putative transcriptional regulator [Klebsiella pneumoniae]
 gi|171850727|gb|ACB55466.1| putative transcriptional regulator [Klebsiella pneumoniae]
Length=99

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 30/65 (47%), Positives = 43/65 (67%), Gaps = 0/65 (0%)

Query  41   ALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP  100
            AL  LR    +SQ E+A  MGV+QP+V+  E+  +DP+LSTL+RY +AL   L L + +P
Sbjct  31   ALSMLRDELNISQTELAAVMGVKQPSVARMEQADNDPRLSTLKRYVKALGGELSLDVTLP  90

Query  101  TLREV  105
            T + V
Sbjct  91   TGKRV  95


>gi|170783251|ref|YP_001711585.1| putative DNA-binding protein [Clavibacter michiganensis subsp. 
sepedonicus]
 gi|169157821|emb|CAQ03026.1| putative DNA-binding protein [Clavibacter michiganensis subsp. 
sepedonicus]
Length=152

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 34/91 (38%), Positives = 51/91 (57%), Gaps = 2/91 (2%)

Query  38   LVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVL  97
            L+D L  +R+H  LSQ ++   MGV Q TVS FE   S+PKL+T++RYA AL+  +   +
Sbjct  46   LIDTLRRVREHRSLSQEQLGALMGVSQATVSSFESGASEPKLATIRRYAHALNVVVEHSV  105

Query  98   EV--PTLREVPTWHRLSSYRGSARDHQVRVG  126
                 +L  + TW  +S +  + R    R G
Sbjct  106  RPIDASLSSLFTWTTVSGFITNPRSTSTRAG  136


>gi|167470799|ref|ZP_02335503.1| DNA-binding protein [Yersinia pestis FV-1]
Length=99

 Score = 58.9 bits (141),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 30/65 (47%), Positives = 43/65 (67%), Gaps = 0/65 (0%)

Query  41   ALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP  100
             L  +R+  QLSQ +VA+ MG+ QP V+  E+  +D KL+TL+RY  AL  +L L +E+P
Sbjct  31   GLQMMREELQLSQKQVAEAMGISQPAVTKLEQRGNDLKLATLKRYVEALGGKLSLDVELP  90

Query  101  TLREV  105
            T R V
Sbjct  91   TGRRV  95


>gi|254360480|ref|ZP_04976629.1| possible transcriptional regulator [Mannheimia haemolytica PHL213]
 gi|153091020|gb|EDN73025.1| possible transcriptional regulator [Mannheimia haemolytica PHL213]
Length=99

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 31/80 (39%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query  23   PSFKGTLED-AEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLST  81
            P  +  +ED A+E  R +  L  LR+   LSQ ++A  +G+ QP ++  E++ +DP+LST
Sbjct  13   PERRQKVEDMAQEMIREIQ-LSKLREELNLSQQQLATALGISQPAIAKLEQKDNDPRLST  71

Query  82   LQRYARALDARLRLVLEVPT  101
            L+RY  A+  +L+L +E+PT
Sbjct  72   LKRYIEAMGGKLKLAVELPT  91


>gi|227327175|ref|ZP_03831199.1| helix-turn-helix domain protein [Pectobacterium carotovorum subsp. 
carotovorum WPP14]
Length=94

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 31/77 (41%), Positives = 42/77 (55%), Gaps = 0/77 (0%)

Query  21  ADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLS  80
           ++P  K   ED  +   L   LI ++    L+  E+A RMGV QP VS  E+  S   +S
Sbjct  17  SNPEVKKAYEDETQEEALRAVLIEMKSKSGLTSTEIAARMGVSQPAVSRLERNVSSASIS  76

Query  81  TLQRYARALDARLRLVL  97
           TLQRYA A   +L+L L
Sbjct  77  TLQRYAAACGMQLKLSL  93


>gi|167471088|ref|ZP_02335792.1| DNA-binding protein [Yersinia pestis FV-1]
Length=99

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 29/65 (45%), Positives = 43/65 (67%), Gaps = 0/65 (0%)

Query  41   ALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP  100
             L  +R+  QLSQ +VA+ MG+ QP V+  E+  +D KL+TL+RY  A+  +L L +E+P
Sbjct  31   GLQMMREELQLSQKQVAEAMGISQPAVTKLEQRGNDLKLATLKRYVEAMGGKLSLDVELP  90

Query  101  TLREV  105
            T R V
Sbjct  91   TGRRV  95


>gi|194337261|ref|YP_002019055.1| XRE family transcriptional regulator [Pelodictyon phaeoclathratiforme 
BU-1]
 gi|194309738|gb|ACF44438.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme 
BU-1]
Length=112

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query  6    PLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQP  65
            P+  D   Y A   ++DP FK   +  E+    + AL+  R    L+Q EVA RMGV QP
Sbjct  9    PVAFDPKAYAAHNSSSDPKFKIAYDALEDEFAALRALLHARTQAGLTQAEVASRMGVSQP  68

Query  66   TVSGFE----KEPSDPKLSTLQRYARALDARLRLVLEVPT  101
             ++  E    K+   P L+TL+RYA A   +L + + +P 
Sbjct  69   VLARIEASLGKQDHSPSLNTLRRYANACGMKLVIQMVLPN  108


>gi|16082687|ref|NP_395234.1| putative transcriptional regulator [Yersinia pestis CO92]
 gi|39980763|ref|NP_951041.1| putative transcriptional regulator [Yersinia pestis KIM]
 gi|45478720|ref|NP_995575.1| putative transcriptional regulator [Yersinia pestis biovar Microtus 
str. 91001]
 46 more sequence titles
 Length=99

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 29/65 (45%), Positives = 43/65 (67%), Gaps = 0/65 (0%)

Query  41   ALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP  100
             L  +R+  QLSQ +VA+ MG+ QP V+  E+  +D KL+TL+RY  A+  +L L +E+P
Sbjct  31   GLQMMREELQLSQKQVAEAMGISQPAVTKLEQRGNDLKLATLKRYVEAMGGKLSLDVELP  90

Query  101  TLREV  105
            T R V
Sbjct  91   TGRRV  95


>gi|59889790|emb|CAH19146.1| Transcriptional Regulator [Escherichia coli]
 gi|284920054|emb|CBG33111.1| putative transcriptional regulator [Escherichia coli 042]
Length=99

 Score = 58.2 bits (139),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 29/69 (43%), Positives = 46/69 (67%), Gaps = 1/69 (1%)

Query  33   EEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDAR  92
            EE R+ + AL  LR+   +SQ E+A  MG++QPT++  E+  +DP+LSTL+RY  AL   
Sbjct  24   EEMRQTI-ALHQLREELNISQTEMAAAMGIKQPTLAKMEQADNDPRLSTLKRYVAALGGE  82

Query  93   LRLVLEVPT  101
            L + +++P 
Sbjct  83   LSIDVKLPN  91


>gi|218703535|ref|YP_002411054.1| transcriptional regulator [Escherichia coli UMN026]
 gi|293403365|ref|ZP_06647456.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298378976|ref|ZP_06988857.1| transcriptional Regulator [Escherichia coli FVEC1302]
 gi|300899462|ref|ZP_07117710.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia 
coli MS 198-1]
 gi|218430632|emb|CAR11498.1| Transcriptional Regulator [Escherichia coli UMN026]
 gi|291429218|gb|EFF02238.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|298280089|gb|EFI21593.1| transcriptional Regulator [Escherichia coli FVEC1302]
 gi|300356941|gb|EFJ72811.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia 
coli MS 198-1]
Length=99

 Score = 57.8 bits (138),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 29/69 (43%), Positives = 46/69 (67%), Gaps = 1/69 (1%)

Query  33   EEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDAR  92
            EE R+ + AL  LR+   +SQ E+A  MG++QPT++  E+  +DP+LSTL+RY  AL   
Sbjct  24   EEMRQTI-ALHQLREELNISQTEMAAAMGIKQPTLAKMEQADNDPRLSTLKRYVAALGGE  82

Query  93   LRLVLEVPT  101
            L + +++P 
Sbjct  83   LSIDVKLPN  91


>gi|269103380|ref|ZP_06156077.1| putative lipoprotein [Photobacterium damselae subsp. damselae 
CIP 102761]
 gi|268163278|gb|EEZ41774.1| putative lipoprotein [Photobacterium damselae subsp. damselae 
CIP 102761]
Length=92

 Score = 57.8 bits (138),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 23/62 (38%), Positives = 43/62 (70%), Gaps = 0/62 (0%)

Query  44   ALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPTLR  103
            A+R+  +++Q E+A+ MG+ QP+V   E+  +D KLST++RY  A+  ++ + +E+PT +
Sbjct  27   AIREELEITQAELARNMGISQPSVVAIEQRGNDVKLSTIKRYIEAMGGKMSINIELPTGK  86

Query  104  EV  105
             V
Sbjct  87   HV  88


>gi|331650584|ref|ZP_08351653.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia 
coli M605]
 gi|323948730|gb|EGB44631.1| helix-turn-helix protein [Escherichia coli H252]
 gi|331040555|gb|EGI12716.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia 
coli M605]
Length=99

 Score = 57.8 bits (138),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 34/92 (37%), Positives = 53/92 (58%), Gaps = 1/92 (1%)

Query  15   IAEAIAA-DPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKE  73
            + E IAA  P  +  ++   +   L   L  +R+  QLSQ +VA  MG+ QP V+  E+ 
Sbjct  4    LEEVIAAQSPESQAIIKAMADEMILETGLQMMREELQLSQKQVADAMGISQPAVTQLEQR  63

Query  74   PSDPKLSTLQRYARALDARLRLVLEVPTLREV  105
             +D KL+TL+RY  A+  +L L +E+PT + V
Sbjct  64   GNDLKLATLKRYVEAMGGKLSLDVELPTGKRV  95


>gi|333370136|ref|ZP_08462206.1| XRE family transcriptional regulator [Psychrobacter sp. 1501(2011)]
 gi|332968126|gb|EGK07210.1| XRE family transcriptional regulator [Psychrobacter sp. 1501(2011)]
Length=100

 Score = 57.4 bits (137),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 24/64 (38%), Positives = 45/64 (71%), Gaps = 0/64 (0%)

Query  38   LVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVL  97
            L + L  +R+  ++SQ E+AK +G++QP++S  E   +D K+ST+++Y  A+  +LR+ +
Sbjct  29   LENQLYRIREELEISQKELAKTLGIKQPSLSAIENRGNDLKISTMKKYVEAMGGKLRIDV  88

Query  98   EVPT  101
            E+PT
Sbjct  89   ELPT  92


>gi|293393845|ref|ZP_06638152.1| transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291423672|gb|EFE96894.1| transcriptional regulator [Serratia odorifera DSM 4582]
Length=99

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 30/69 (44%), Positives = 46/69 (67%), Gaps = 1/69 (1%)

Query  32  AEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDA  91
           A+E R+ + AL  +R+   +SQ ++A  MG++QP V+  EK  +DPKLSTL+RY +AL  
Sbjct  23  ADEIRQEI-ALAKIREELNISQKQLADAMGIKQPAVAKMEKVDNDPKLSTLKRYVKALGG  81

Query  92  RLRLVLEVP  100
            L L + +P
Sbjct  82  ELSLDVTLP  90


>gi|93004830|ref|YP_579234.1| XRE family transcriptional regulator [Psychrobacter cryohalolentis 
K5]
 gi|92395392|gb|ABE76295.1| transcriptional regulator, XRE family [Psychrobacter cryohalolentis 
K5]
Length=100

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 24/64 (38%), Positives = 45/64 (71%), Gaps = 0/64 (0%)

Query  38   LVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVL  97
            L + L  +R+  ++SQ E+A+ MG++QP++S  E   +D K+ST+++Y  A+  +LR+ +
Sbjct  29   LENQLSRIREELEISQKELAQTMGIKQPSLSAIENRGNDLKISTMKKYVEAMGGKLRIDV  88

Query  98   EVPT  101
            E+PT
Sbjct  89   ELPT  92


>gi|300949953|ref|ZP_07163909.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia 
coli MS 116-1]
 gi|300450681|gb|EFK14301.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia 
coli MS 116-1]
 gi|324020203|gb|EGB89422.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia 
coli MS 117-3]
Length=99

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 33/88 (38%), Positives = 51/88 (58%), Gaps = 1/88 (1%)

Query  15   IAEAIAA-DPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKE  73
            + E IAA  P  +  ++   +   L   L  +R+  QLSQ +VA  MG+ QP V+  E+ 
Sbjct  4    LEEVIAAQSPESQAIIKAMADEMILETGLQMMREELQLSQKQVADAMGISQPAVTQLEQR  63

Query  74   PSDPKLSTLQRYARALDARLRLVLEVPT  101
             +D KL+TL+RY  A+  +L L +E+PT
Sbjct  64   GNDLKLATLKRYVEAMGGKLSLDVELPT  91


>gi|251787931|ref|YP_003002652.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247536552|gb|ACT05173.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
Length=94

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 34/82 (42%), Positives = 45/82 (55%), Gaps = 1/82 (1%)

Query  16  AEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPS  75
           AEA++  P  K   ED  +   L   LI ++    L+  E+A RMGV QP VS  E+  S
Sbjct  13  AEALS-HPEVKKAYEDETQEEALRAVLIEMKSRSGLTSTEIAARMGVSQPAVSRLERNVS  71

Query  76  DPKLSTLQRYARALDARLRLVL  97
              +STLQRYA A   +L+L L
Sbjct  72  SASISTLQRYAAACGMQLKLSL  93


>gi|318062226|ref|ZP_07980947.1| proteins of Bacteriophage / transcription regulator [Streptomyces 
sp. SA3_actG]
 gi|318078648|ref|ZP_07985980.1| proteins of Bacteriophage / transcription regulator [Streptomyces 
sp. SA3_actF]
Length=123

 Score = 57.0 bits (136),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 28/58 (49%), Positives = 39/58 (68%), Gaps = 0/58 (0%)

Query  38  LVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRL  95
           LV+ L+  RK C ++Q +VA+ M   Q  VS FE+   DP+LST+ RYARA+  +LRL
Sbjct  31  LVETLVKHRKKCGITQKQVARHMETTQSAVSDFERLGGDPRLSTVMRYARAVGLKLRL  88


>gi|254447114|ref|ZP_05060581.1| transcriptional regulator, XRE family [gamma proteobacterium 
HTCC5015]
 gi|198263253|gb|EDY87531.1| transcriptional regulator, XRE family [gamma proteobacterium 
HTCC5015]
Length=103

 Score = 57.0 bits (136),  Expect = 9e-07, Method: Compositional matrix adjust.
 Identities = 32/84 (39%), Positives = 48/84 (58%), Gaps = 0/84 (0%)

Query  20   AADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKL  79
            A DP      +   E   L   L  +R   + +QVE+A+ +G++QPTV+G EK   D KL
Sbjct  14   AEDPKIVADAKAKAETILLNIHLAEIRALMEKTQVEMAEALGIKQPTVAGMEKAGKDVKL  73

Query  80   STLQRYARALDARLRLVLEVPTLR  103
            S+L+RY  A   ++RL +E+P  R
Sbjct  74   SSLKRYVEAAGGKVRLDIELPDGR  97


>gi|302520968|ref|ZP_07273310.1| predicted protein [Streptomyces sp. SPB78]
 gi|302429863|gb|EFL01679.1| predicted protein [Streptomyces sp. SPB78]
Length=148

 Score = 57.0 bits (136),  Expect = 9e-07, Method: Compositional matrix adjust.
 Identities = 28/58 (49%), Positives = 39/58 (68%), Gaps = 0/58 (0%)

Query  38   LVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRL  95
            LV+ L+  RK C ++Q +VA+ M   Q  VS FE+   DP+LST+ RYARA+  +LRL
Sbjct  56   LVETLVKHRKKCGITQKQVARHMETTQSAVSDFERLGGDPRLSTVMRYARAVGLKLRL  113


>gi|242240939|ref|YP_002989120.1| XRE family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242132996|gb|ACS87298.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703]
Length=94

 Score = 57.0 bits (136),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 31/75 (42%), Positives = 40/75 (54%), Gaps = 0/75 (0%)

Query  23  PSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTL  82
           P  K   ED  +   L   LI ++    L+  E+A RMGV QP VS  E+  S   +STL
Sbjct  19  PEVKKAYEDETQEEALRAVLIEMKSRSGLTSTEIAARMGVSQPAVSRLERNVSSASISTL  78

Query  83  QRYARALDARLRLVL  97
           QRYA A   +L+L L
Sbjct  79  QRYAAACGMQLKLSL  93


>gi|156933285|ref|YP_001437201.1| hypothetical protein ESA_01097 [Cronobacter sakazakii ATCC BAA-894]
 gi|260598604|ref|YP_003211175.1| hypothetical protein CTU_28120 [Cronobacter turicensis z3032]
 gi|156531539|gb|ABU76365.1| hypothetical protein ESA_01097 [Cronobacter sakazakii ATCC BAA-894]
 gi|260217781|emb|CBA32230.1| hypothetical protein CTU_28120 [Cronobacter turicensis z3032]
Length=99

 Score = 57.0 bits (136),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 30/81 (38%), Positives = 49/81 (61%), Gaps = 0/81 (0%)

Query  20  AADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKL  79
           A  P  +  +E+      L   L ALR+   +SQ E+A++MG+ QP+V+  E+  ++ K+
Sbjct  10  AQTPEARARIEEKTAQLLLETHLYALREALSVSQTEMARQMGIAQPSVAAIEQRGNEMKI  69

Query  80  STLQRYARALDARLRLVLEVP  100
           STL+RY  AL   +RL +E+P
Sbjct  70  STLKRYVEALGGTVRLDVELP  90


>gi|239906136|ref|YP_002952875.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
 gi|239796000|dbj|BAH74989.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
Length=107

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 32/84 (39%), Positives = 48/84 (58%), Gaps = 1/84 (1%)

Query  15  IAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEP  74
           + E + ADP F+       E   L++A+I  R    ++Q +VAK MGV QP V+  E   
Sbjct  14  VRERMMADPEFRKEYGALGEEFALIEAMIEARTQANMTQADVAKAMGVSQPRVARIES-G  72

Query  75  SDPKLSTLQRYARALDARLRLVLE  98
            +  L TL+RYA+A   RL++V+E
Sbjct  73  KNVSLETLRRYAKATGGRLKIVIE  96


>gi|152994699|ref|YP_001339534.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835623|gb|ABR69599.1| putative transcriptional regulator, XRE family [Marinomonas sp. 
MWYL1]
Length=100

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 25/59 (43%), Positives = 40/59 (68%), Gaps = 0/59 (0%)

Query  42  LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP  100
           L  LR+  Q++Q ++A  +GV+QPT++G E++  D KLSTL+RY      +L L +E+P
Sbjct  33  LAQLRERMQITQEDIANTLGVKQPTIAGMERKGRDVKLSTLKRYVEGAGGKLTLDVELP  91


>gi|157372070|ref|YP_001480059.1| XRE family transcriptional regulator [Serratia proteamaculans 
568]
 gi|157323834|gb|ABV42931.1| transcriptional regulator, XRE family [Serratia proteamaculans 
568]
Length=100

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 41/60 (69%), Gaps = 0/60 (0%)

Query  42   LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVPT  101
            L  LR+   +SQVE+AKR+G+ QP+V+  EK  S+ KLS+L+RY  A+   L L +++P 
Sbjct  33   LAMLREELAVSQVELAKRLGISQPSVANLEKRGSEIKLSSLKRYIEAMGGTLSLEVQLPN  92


>gi|317048706|ref|YP_004116354.1| XRE family transcriptional regulator [Pantoea sp. At-9b]
 gi|316950323|gb|ADU69798.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
Length=100

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 29/59 (50%), Positives = 40/59 (68%), Gaps = 0/59 (0%)

Query  42  LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP  100
           L  LR+    +QVE+AK +GV+QPTV+  EK   D KLSTL+RY  A   +LR+ +E+P
Sbjct  33  LAELREKVDKTQVEMAKSLGVKQPTVAEMEKPGRDVKLSTLKRYVEAAGGKLRVDVELP  91


>gi|332850503|ref|ZP_08432806.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 
6013150]
 gi|332730642|gb|EGJ61955.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 
6013150]
Length=100

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 23/68 (34%), Positives = 47/68 (70%), Gaps = 0/68 (0%)

Query  38   LVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVL  97
            L + L  +R+  ++SQ E+A+ +G++QP++S  E   +D K+ST+++Y  A+  +LR+ +
Sbjct  29   LENQLYLIREELEISQKELAETLGIKQPSLSAIENRGNDLKISTMKKYVEAMGGKLRIDV  88

Query  98   EVPTLREV  105
            E+PT + +
Sbjct  89   ELPTGKHI  96


>gi|293611472|ref|ZP_06693766.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826198|gb|EFF84569.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length=100

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 23/68 (34%), Positives = 47/68 (70%), Gaps = 0/68 (0%)

Query  38   LVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVL  97
            L + L  +R+  ++SQ E+A+ +G++QP++S  E   +D K+ST+++Y  A+  +LR+ +
Sbjct  29   LENQLYLIREELEISQKELAETLGIKQPSLSAIENRGNDLKISTMKKYVEAMGGKLRIDV  88

Query  98   EVPTLREV  105
            E+PT + +
Sbjct  89   ELPTGKHI  96


>gi|227327343|ref|ZP_03831367.1| hypothetical protein PcarcW_08483 [Pectobacterium carotovorum 
subsp. carotovorum WPP14]
Length=100

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 29/59 (50%), Positives = 42/59 (72%), Gaps = 0/59 (0%)

Query  42  LIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLSTLQRYARALDARLRLVLEVP  100
           L  LR+  Q +QVE+A+ +G++QPTV+  EK   D KLSTL+RY  A  ++LRL +E+P
Sbjct  33  LAELRERVQKTQVEMAQVLGLKQPTVAVMEKPGRDLKLSTLKRYVEATGSKLRLDVELP  91



Lambda     K      H
   0.319    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130023393564


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40