BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1958c

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609095|ref|NP_216474.1|  hypothetical protein Rv1958c [Mycob...   405    1e-111
gi|340626967|ref|YP_004745419.1|  hypothetical protein MCAN_19741...   404    6e-111
gi|289574641|ref|ZP_06454868.1|  conserved hypothetical protein [...   402    2e-110
gi|254364775|ref|ZP_04980821.1|  hypothetical protein TBHG_01912 ...   348    2e-94 
gi|85375308|ref|YP_459370.1|  alkanal monooxygenase alpha chain [...  37.4    1.2   


>gi|15609095|ref|NP_216474.1| hypothetical protein Rv1958c [Mycobacterium tuberculosis H37Rv]
 gi|31793150|ref|NP_855643.1| hypothetical protein Mb1993c [Mycobacterium bovis AF2122/97]
 gi|121637863|ref|YP_978086.1| hypothetical protein BCG_1997c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 41 more sequence titles
 Length=204

 Score =  405 bits (1042),  Expect = 1e-111, Method: Compositional matrix adjust.
 Identities = 204/204 (100%), Positives = 204/204 (100%), Gaps = 0/204 (0%)

Query  1    MIPTPSIGAVINAKISHRACRTFPRPTDIHPRRYLPRKHGGTNPRRLSMNPGGMRIRCRR  60
            MIPTPSIGAVINAKISHRACRTFPRPTDIHPRRYLPRKHGGTNPRRLSMNPGGMRIRCRR
Sbjct  1    MIPTPSIGAVINAKISHRACRTFPRPTDIHPRRYLPRKHGGTNPRRLSMNPGGMRIRCRR  60

Query  61   GDKSRKLLSRSQVQPLVGRPAKIPSPAANAPPSRARTASPVFENLELRAAAGLAFGFRLR  120
            GDKSRKLLSRSQVQPLVGRPAKIPSPAANAPPSRARTASPVFENLELRAAAGLAFGFRLR
Sbjct  61   GDKSRKLLSRSQVQPLVGRPAKIPSPAANAPPSRARTASPVFENLELRAAAGLAFGFRLR  120

Query  121  PFGGTAADSPPVAAQDLDPCRWADSPALHLAVGVETMVVGQLDSPSFGQGVPLVAGHWAP  180
            PFGGTAADSPPVAAQDLDPCRWADSPALHLAVGVETMVVGQLDSPSFGQGVPLVAGHWAP
Sbjct  121  PFGGTAADSPPVAAQDLDPCRWADSPALHLAVGVETMVVGQLDSPSFGQGVPLVAGHWAP  180

Query  181  GETGIGRDNISRVNGGSARRPVRS  204
            GETGIGRDNISRVNGGSARRPVRS
Sbjct  181  GETGIGRDNISRVNGGSARRPVRS  204


>gi|340626967|ref|YP_004745419.1| hypothetical protein MCAN_19741 [Mycobacterium canettii CIPT 
140010059]
 gi|340005157|emb|CCC44306.1| hypothetical protein MCAN_19741 [Mycobacterium canettii CIPT 
140010059]
Length=204

 Score =  404 bits (1037),  Expect = 6e-111, Method: Compositional matrix adjust.
 Identities = 203/204 (99%), Positives = 203/204 (99%), Gaps = 0/204 (0%)

Query  1    MIPTPSIGAVINAKISHRACRTFPRPTDIHPRRYLPRKHGGTNPRRLSMNPGGMRIRCRR  60
            MIPTPSIGAVINAKISHRACRTFPRPTDIHPRRYLPRKHGGTN RRLSMNPGGMRIRCRR
Sbjct  1    MIPTPSIGAVINAKISHRACRTFPRPTDIHPRRYLPRKHGGTNSRRLSMNPGGMRIRCRR  60

Query  61   GDKSRKLLSRSQVQPLVGRPAKIPSPAANAPPSRARTASPVFENLELRAAAGLAFGFRLR  120
            GDKSRKLLSRSQVQPLVGRPAKIPSPAANAPPSRARTASPVFENLELRAAAGLAFGFRLR
Sbjct  61   GDKSRKLLSRSQVQPLVGRPAKIPSPAANAPPSRARTASPVFENLELRAAAGLAFGFRLR  120

Query  121  PFGGTAADSPPVAAQDLDPCRWADSPALHLAVGVETMVVGQLDSPSFGQGVPLVAGHWAP  180
            PFGGTAADSPPVAAQDLDPCRWADSPALHLAVGVETMVVGQLDSPSFGQGVPLVAGHWAP
Sbjct  121  PFGGTAADSPPVAAQDLDPCRWADSPALHLAVGVETMVVGQLDSPSFGQGVPLVAGHWAP  180

Query  181  GETGIGRDNISRVNGGSARRPVRS  204
            GETGIGRDNISRVNGGSARRPVRS
Sbjct  181  GETGIGRDNISRVNGGSARRPVRS  204


>gi|289574641|ref|ZP_06454868.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289539072|gb|EFD43650.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
Length=204

 Score =  402 bits (1033),  Expect = 2e-110, Method: Compositional matrix adjust.
 Identities = 203/204 (99%), Positives = 203/204 (99%), Gaps = 0/204 (0%)

Query  1    MIPTPSIGAVINAKISHRACRTFPRPTDIHPRRYLPRKHGGTNPRRLSMNPGGMRIRCRR  60
            MIPTPSIGAVINAKISHRACRTFPRPTDIHPRRYLPRKHGGTNPRRLSMNPGGMRIRCRR
Sbjct  1    MIPTPSIGAVINAKISHRACRTFPRPTDIHPRRYLPRKHGGTNPRRLSMNPGGMRIRCRR  60

Query  61   GDKSRKLLSRSQVQPLVGRPAKIPSPAANAPPSRARTASPVFENLELRAAAGLAFGFRLR  120
            GDKSRKLLSRSQVQPLVGRPAKIPSPAANAPPSRARTASPVFENLELRAAAGLAFGFRLR
Sbjct  61   GDKSRKLLSRSQVQPLVGRPAKIPSPAANAPPSRARTASPVFENLELRAAAGLAFGFRLR  120

Query  121  PFGGTAADSPPVAAQDLDPCRWADSPALHLAVGVETMVVGQLDSPSFGQGVPLVAGHWAP  180
            PFGGTAADSPPVAAQDLDP RWADSPALHLAVGVETMVVGQLDSPSFGQGVPLVAGHWAP
Sbjct  121  PFGGTAADSPPVAAQDLDPFRWADSPALHLAVGVETMVVGQLDSPSFGQGVPLVAGHWAP  180

Query  181  GETGIGRDNISRVNGGSARRPVRS  204
            GETGIGRDNISRVNGGSARRPVRS
Sbjct  181  GETGIGRDNISRVNGGSARRPVRS  204


>gi|254364775|ref|ZP_04980821.1| hypothetical protein TBHG_01912 [Mycobacterium tuberculosis str. 
Haarlem]
 gi|134150289|gb|EBA42334.1| hypothetical protein TBHG_01912 [Mycobacterium tuberculosis str. 
Haarlem]
Length=176

 Score =  348 bits (893),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 175/176 (99%), Positives = 176/176 (100%), Gaps = 0/176 (0%)

Query  29   IHPRRYLPRKHGGTNPRRLSMNPGGMRIRCRRGDKSRKLLSRSQVQPLVGRPAKIPSPAA  88
            +HPRRYLPRKHGGTNPRRLSMNPGGMRIRCRRGDKSRKLLSRSQVQPLVGRPAKIPSPAA
Sbjct  1    MHPRRYLPRKHGGTNPRRLSMNPGGMRIRCRRGDKSRKLLSRSQVQPLVGRPAKIPSPAA  60

Query  89   NAPPSRARTASPVFENLELRAAAGLAFGFRLRPFGGTAADSPPVAAQDLDPCRWADSPAL  148
            NAPPSRARTASPVFENLELRAAAGLAFGFRLRPFGGTAADSPPVAAQDLDPCRWADSPAL
Sbjct  61   NAPPSRARTASPVFENLELRAAAGLAFGFRLRPFGGTAADSPPVAAQDLDPCRWADSPAL  120

Query  149  HLAVGVETMVVGQLDSPSFGQGVPLVAGHWAPGETGIGRDNISRVNGGSARRPVRS  204
            HLAVGVETMVVGQLDSPSFGQGVPLVAGHWAPGETGIGRDNISRVNGGSARRPVRS
Sbjct  121  HLAVGVETMVVGQLDSPSFGQGVPLVAGHWAPGETGIGRDNISRVNGGSARRPVRS  176


>gi|85375308|ref|YP_459370.1| alkanal monooxygenase alpha chain [Erythrobacter litoralis HTCC2594]
 gi|84788391|gb|ABC64573.1| alkanal monooxygenase alpha chain [Erythrobacter litoralis HTCC2594]
Length=331

 Score = 37.4 bits (85),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 36/123 (30%), Positives = 53/123 (44%), Gaps = 16/123 (13%)

Query  1    MIPTPSIGAVINAKI-------SHRACRTFPRPTDIHPRRYLPRKHGGTNPRRLSMNPGG  53
            M+ +   GA + AK+       SH A        +I+ R + P +   T  R   M   G
Sbjct  164  MLGSSLFGAQLAAKLGLPYAFASHFAPDHLDEALEIYRRDFQPSQ---TLDRPHVM--AG  218

Query  54   MRIRCRRGDKSRKLLSRSQVQPLV----GRPAKIPSPAANAPPSRARTASPVFENLELRA  109
            M++ C   D+  +LLS SQ Q  V    G P K+P P  +   +    A  +  +LE  A
Sbjct  219  MQVICADTDEDARLLSSSQAQAFVRLRSGNPGKLPPPIEDYRETLPAPARAMLVHLEQAA  278

Query  110  AAG  112
            A G
Sbjct  279  AVG  281



Lambda     K      H
   0.320    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 226797436674


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40