BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1961
Length=164
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609098|ref|NP_216477.1| hypothetical protein Rv1961 [Mycoba... 332 1e-89
gi|15841431|ref|NP_336468.1| hypothetical protein MT2010 [Mycoba... 330 4e-89
gi|340626970|ref|YP_004745422.1| hypothetical protein MCAN_19771... 304 3e-81
gi|167970522|ref|ZP_02552799.1| hypothetical protein MtubH3_2181... 226 6e-58
gi|119714085|ref|YP_919227.1| helicase domain-containing protein... 116 1e-24
gi|329940573|ref|ZP_08289854.1| putative DNA helicase [Streptomy... 80.1 1e-13
gi|317126185|ref|YP_004100297.1| helicase [Intrasporangium calvu... 79.0 2e-13
gi|269793674|ref|YP_003313129.1| helicase [Sanguibacter keddieii... 78.6 3e-13
gi|269957108|ref|YP_003326897.1| helicase domain-containing prot... 58.9 3e-07
gi|325068192|ref|ZP_08126865.1| helicase domain protein [Actinom... 54.3 6e-06
gi|326774110|ref|ZP_08233392.1| helicase [Actinomyces viscosus C... 51.2 5e-05
gi|108797791|ref|YP_637988.1| helicase-like protein [Mycobacteri... 48.1 4e-04
gi|297561673|ref|YP_003680647.1| helicase [Nocardiopsis dassonvi... 45.1 0.003
gi|269126750|ref|YP_003300120.1| helicase domain-containing prot... 43.9 0.008
gi|111219759|ref|YP_710553.1| hypothetical protein FRAAL0262 [Fr... 42.7 0.020
gi|254384439|ref|ZP_04999780.1| helicase [Streptomyces sp. Mg1] ... 42.0 0.034
gi|298251772|ref|ZP_06975575.1| helicase domain protein [Ktedono... 41.2 0.049
gi|302554831|ref|ZP_07307173.1| helicase [Streptomyces viridochr... 40.4 0.090
gi|313124722|ref|YP_004034981.1| hypothetical protein LDBND_1989... 39.3 0.21
gi|258650718|ref|YP_003199874.1| helicase domain-containing prot... 38.9 0.24
gi|83648360|ref|YP_436795.1| hypothetical protein HCH_05715 [Hah... 38.9 0.26
gi|328885790|emb|CCA59029.1| helicase [Streptomyces venezuelae A... 38.5 0.30
gi|218709636|ref|YP_002417257.1| putative helicase family protei... 38.5 0.34
gi|344341849|ref|ZP_08772764.1| helicase domain-containing prote... 37.7 0.61
gi|163848463|ref|YP_001636507.1| helicase domain-containing prot... 37.4 0.74
gi|295100453|emb|CBK97998.1| Helicase conserved C-terminal domai... 37.0 0.96
gi|320527416|ref|ZP_08028597.1| hypothetical protein HMPREF9430_... 37.0 1.1
gi|323495149|ref|ZP_08100234.1| hypothetical protein VIBR0546_08... 37.0 1.1
gi|162451511|ref|YP_001613878.1| superfamily II DNA/RNA helicase... 36.6 1.3
gi|302343994|ref|YP_003808523.1| helicase domain protein [Desulf... 36.6 1.3
gi|74153214|dbj|BAC31727.2| unnamed protein product [Mus musculus] 36.6 1.4
gi|116751267|ref|YP_847954.1| helicase domain-containing protein... 36.6 1.4
gi|262200370|ref|YP_003271578.1| helicase [Gordonia bronchialis ... 35.8 2.1
gi|254423171|ref|ZP_05036889.1| Helicase conserved C-terminal do... 35.8 2.1
gi|126454020|ref|YP_001067906.1| helicase, C-terminal [Burkholde... 35.4 2.6
gi|325003372|ref|ZP_08124484.1| helicase domain protein [Pseudon... 35.0 3.2
gi|290956129|ref|YP_003487311.1| helicase [Streptomyces scabiei ... 35.0 3.5
gi|88706074|ref|ZP_01103782.1| helicase family protein [Congregi... 35.0 3.5
gi|327289924|ref|XP_003229674.1| PREDICTED: zinc finger protein ... 35.0 3.9
gi|344338976|ref|ZP_08769906.1| helicase domain-containing prote... 34.7 4.2
gi|240948985|ref|ZP_04753339.1| ATP-dependent helicase HepA [Act... 34.7 5.1
gi|331090150|ref|ZP_08339038.1| hypothetical protein HMPREF1025_... 34.7 5.2
gi|83860019|ref|ZP_00953539.1| PnbA [Oceanicaulis alexandrii HTC... 34.7 5.2
gi|167851519|ref|ZP_02477027.1| helicase, C-terminal [Burkholder... 34.3 5.6
gi|288919499|ref|ZP_06413830.1| helicase domain protein [Frankia... 34.3 6.1
gi|340398413|ref|YP_004727438.1| hypothetical protein SALIVB_060... 34.3 6.2
gi|325284134|ref|YP_004256675.1| peptidase M16 domain-containing... 34.3 6.4
gi|223042060|ref|ZP_03612236.1| ATP-dependent helicase HepA [Act... 33.9 8.2
gi|26340614|dbj|BAC33969.1| unnamed protein product [Mus musculus] 33.9 8.2
gi|53718404|ref|YP_107390.1| putative helicase family protein [B... 33.9 8.4
>gi|15609098|ref|NP_216477.1| hypothetical protein Rv1961 [Mycobacterium tuberculosis H37Rv]
gi|31793153|ref|NP_855646.1| hypothetical protein Mb1996 [Mycobacterium bovis AF2122/97]
gi|121637866|ref|YP_978089.1| hypothetical protein BCG_2000 [Mycobacterium bovis BCG str. Pasteur
1173P2]
71 more sequence titles
Length=164
Score = 332 bits (851), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 163/164 (99%), Positives = 164/164 (100%), Gaps = 0/164 (0%)
Query 1 VFLPTNAQYQLLVVGVSPWDTPSPSGRISWGSAWPHQARRAQTCQRVRRHWMIDTTEAAY 60
+FLPTNAQYQLLVVGVSPWDTPSPSGRISWGSAWPHQARRAQTCQRVRRHWMIDTTEAAY
Sbjct 1 MFLPTNAQYQLLVVGVSPWDTPSPSGRISWGSAWPHQARRAQTCQRVRRHWMIDTTEAAY 60
Query 61 RLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKLTGAALI 120
RLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKLTGAALI
Sbjct 61 RLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKLTGAALI 120
Query 121 DDNAVQARANAEALAEGGGVPAYAADETTPTPTTTPKTAHPSRA 164
DDNAVQARANAEALAEGGGVPAYAADETTPTPTTTPKTAHPSRA
Sbjct 121 DDNAVQARANAEALAEGGGVPAYAADETTPTPTTTPKTAHPSRA 164
>gi|15841431|ref|NP_336468.1| hypothetical protein MT2010 [Mycobacterium tuberculosis CDC1551]
gi|13881669|gb|AAK46282.1| hypothetical protein MT2010 [Mycobacterium tuberculosis CDC1551]
gi|323719525|gb|EGB28651.1| hypothetical protein TMMG_01221 [Mycobacterium tuberculosis CDC1551A]
Length=164
Score = 330 bits (846), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 162/164 (99%), Positives = 163/164 (99%), Gaps = 0/164 (0%)
Query 1 VFLPTNAQYQLLVVGVSPWDTPSPSGRISWGSAWPHQARRAQTCQRVRRHWMIDTTEAAY 60
+FLPTNAQYQLLVVGV PWDTPSPSGRISWGSAWPHQARRAQTCQRVRRHWMIDTTEAAY
Sbjct 1 MFLPTNAQYQLLVVGVGPWDTPSPSGRISWGSAWPHQARRAQTCQRVRRHWMIDTTEAAY 60
Query 61 RLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKLTGAALI 120
RLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKLTGAALI
Sbjct 61 RLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKLTGAALI 120
Query 121 DDNAVQARANAEALAEGGGVPAYAADETTPTPTTTPKTAHPSRA 164
DDNAVQARANAEALAEGGGVPAYAADETTPTPTTTPKTAHPSRA
Sbjct 121 DDNAVQARANAEALAEGGGVPAYAADETTPTPTTTPKTAHPSRA 164
>gi|340626970|ref|YP_004745422.1| hypothetical protein MCAN_19771 [Mycobacterium canettii CIPT
140010059]
gi|340005160|emb|CCC44309.1| hypothetical protein MCAN_19771 [Mycobacterium canettii CIPT
140010059]
Length=163
Score = 304 bits (779), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 161/164 (99%), Positives = 162/164 (99%), Gaps = 1/164 (0%)
Query 1 VFLPTNAQYQLLVVGVSPWDTPSPSGRISWGSAWPHQARRAQTCQRVRRHWMIDTTEAAY 60
+FLPTNAQYQLLVVGVSPWDTPSPSGRISWGSAWPHQARRAQTCQRVRRHWMIDTTEAAY
Sbjct 1 MFLPTNAQYQLLVVGVSPWDTPSPSGRISWGSAWPHQARRAQTCQRVRRHWMIDTTEAAY 60
Query 61 RLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKLTGAALI 120
RLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKLTGAALI
Sbjct 61 RLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKLTGAALI 120
Query 121 DDNAVQARANAEALAEGGGVPAYAADETTPTPTTTPKTAHPSRA 164
DDNAVQARANAEALAEGGGVPAYAADET TPTTTPKTAHPSRA
Sbjct 121 DDNAVQARANAEALAEGGGVPAYAADETP-TPTTTPKTAHPSRA 163
>gi|167970522|ref|ZP_02552799.1| hypothetical protein MtubH3_21813 [Mycobacterium tuberculosis
H37Ra]
gi|254550978|ref|ZP_05141425.1| hypothetical protein Mtube_11036 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|339294886|gb|AEJ46997.1| hypothetical protein CCDC5079_1807 [Mycobacterium tuberculosis
CCDC5079]
gi|339298509|gb|AEJ50619.1| hypothetical protein CCDC5180_1782 [Mycobacterium tuberculosis
CCDC5180]
Length=113
Score = 226 bits (577), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 113/113 (100%), Positives = 113/113 (100%), Gaps = 0/113 (0%)
Query 52 MIDTTEAAYRLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAP 111
MIDTTEAAYRLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAP
Sbjct 1 MIDTTEAAYRLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAP 60
Query 112 VKLTGAALIDDNAVQARANAEALAEGGGVPAYAADETTPTPTTTPKTAHPSRA 164
VKLTGAALIDDNAVQARANAEALAEGGGVPAYAADETTPTPTTTPKTAHPSRA
Sbjct 61 VKLTGAALIDDNAVQARANAEALAEGGGVPAYAADETTPTPTTTPKTAHPSRA 113
>gi|119714085|ref|YP_919227.1| helicase domain-containing protein [Nocardioides sp. JS614]
gi|119525994|gb|ABL79364.1| helicase domain protein [Nocardioides sp. JS614]
Length=1235
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/94 (63%), Positives = 71/94 (76%), Gaps = 7/94 (7%)
Query 57 EAAYRLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKLTG 116
+A Y L + DG+S VREN+VDIL RELLGPI GP+E+LPFSPRSQYLVGH+APVKLTG
Sbjct 12 QATYELNFDLDGSSFAVRENVVDILERELLGPINGPEELLPFSPRSQYLVGHIAPVKLTG 71
Query 117 A---ALIDDNA----VQARANAEALAEGGGVPAY 143
A AL DD+ V+ R + + L+EG GVPAY
Sbjct 72 AKSSALGDDDTAQDLVEVRTDDDGLSEGRGVPAY 105
>gi|329940573|ref|ZP_08289854.1| putative DNA helicase [Streptomyces griseoaurantiacus M045]
gi|329300634|gb|EGG44531.1| putative DNA helicase [Streptomyces griseoaurantiacus M045]
Length=1250
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/111 (45%), Positives = 60/111 (55%), Gaps = 7/111 (6%)
Query 59 AYRLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKLT--- 115
AY L +PD S T RENLVDIL RELLGP GP E+L P S YL+G +APV+LT
Sbjct 22 AYHLALEPDDRSWTARENLVDILERELLGPANGPDEILDGVPDSAYLIGRIAPVRLTAGQ 81
Query 116 ---GAALIDDNAVQARANAEALAEGGGVPAYAADETTPTPTTTPKTAHPSR 163
G A DD A +A AE GVP A D+++ + P +
Sbjct 82 DDPGEAGSDDAATDV-GDAVDAAESRGVPLTAVDDSSASSEEDEVEDQPQK 131
>gi|317126185|ref|YP_004100297.1| helicase [Intrasporangium calvum DSM 43043]
gi|315590273|gb|ADU49570.1| helicase domain protein [Intrasporangium calvum DSM 43043]
Length=1232
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/101 (46%), Positives = 61/101 (61%), Gaps = 9/101 (8%)
Query 58 AAYRLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKLTGA 117
AAY L ++PDG S TVRENL +I+ RELLGP GP E+L P YLVG +APV+LTG
Sbjct 18 AAYELAHEPDGRSWTVRENLTNIIERELLGPAHGPNELLDGPPDVAYLVGRIAPVRLTGK 77
Query 118 ALIDDNAVQARA-------NAEALAEGGGVPAYAADETTPT 151
+ DD + A +A EG G+P + D+++ T
Sbjct 78 S--DDPTEEGAAEAPTDVGDAVDANEGRGIPMTSVDDSSAT 116
>gi|269793674|ref|YP_003313129.1| helicase [Sanguibacter keddieii DSM 10542]
gi|269095859|gb|ACZ20295.1| helicase family protein [Sanguibacter keddieii DSM 10542]
Length=1254
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/101 (49%), Positives = 57/101 (57%), Gaps = 6/101 (5%)
Query 55 TTEAAYRLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKL 114
T Y LTY PDG+S T RENL DIL RELLGP G E+L P + YLVG +AP KL
Sbjct 10 TVRKEYELTYVPDGSSWTDRENLADILDRELLGPTHGADELLDAQPDALYLVGRIAPAKL 69
Query 115 T---GAALIDDNAVQARAN---AEALAEGGGVPAYAADETT 149
G L +D Q+ A+ AEA G GVP +E T
Sbjct 70 VGRGGVTLAEDADQQSDADVVPAEAADLGRGVPVGVREEET 110
>gi|269957108|ref|YP_003326897.1| helicase domain-containing protein [Xylanimonas cellulosilytica
DSM 15894]
gi|269305789|gb|ACZ31339.1| helicase domain protein [Xylanimonas cellulosilytica DSM 15894]
Length=1252
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/101 (38%), Positives = 47/101 (47%), Gaps = 7/101 (6%)
Query 54 DTTEAAYRLTYQPDG---TSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLA 110
D Y L+ +P+ S TVRENL I+ RELLGP G E+L P YLVG +A
Sbjct 15 DRVRREYELSTEPESYVWDSWTVRENLASIIDRELLGPAHGDDELLDAQPDGLYLVGRIA 74
Query 111 PVKLTGAALIDDNAVQARANAEAL----AEGGGVPAYAADE 147
P KL G + + + EG GVP DE
Sbjct 75 PAKLVGRGAVTSAGAEDSDSDVDSADQAGEGRGVPVPGVDE 115
>gi|325068192|ref|ZP_08126865.1| helicase domain protein [Actinomyces oris K20]
Length=1296
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/61 (45%), Positives = 38/61 (63%), Gaps = 0/61 (0%)
Query 58 AAYRLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKLTGA 117
+AY + +S + R LV++L REL+GP G EVL P +YL+G +AP +LTGA
Sbjct 26 SAYVFEQELGHSSASARAGLVEVLKRELIGPAEGDTEVLTTPPDDRYLLGRIAPTRLTGA 85
Query 118 A 118
A
Sbjct 86 A 86
>gi|326774110|ref|ZP_08233392.1| helicase [Actinomyces viscosus C505]
gi|326636249|gb|EGE37153.1| helicase [Actinomyces viscosus C505]
Length=1296
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/64 (41%), Positives = 39/64 (61%), Gaps = 2/64 (3%)
Query 59 AYRLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKLTGAA 118
AY + +S + R +V++L REL+GP G EVL P +YL+G +AP +L+GA
Sbjct 27 AYVFDEELGHSSASARAGIVEVLKRELIGPAEGDTEVLTTPPDDRYLLGRIAPTRLSGA- 85
Query 119 LIDD 122
+DD
Sbjct 86 -VDD 88
>gi|108797791|ref|YP_637988.1| helicase-like protein [Mycobacterium sp. MCS]
gi|119866883|ref|YP_936835.1| helicase domain-containing protein [Mycobacterium sp. KMS]
gi|108768210|gb|ABG06932.1| helicase-like protein [Mycobacterium sp. MCS]
gi|119692972|gb|ABL90045.1| helicase domain protein [Mycobacterium sp. KMS]
Length=1220
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/45 (52%), Positives = 32/45 (72%), Gaps = 0/45 (0%)
Query 70 SITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKL 114
S VR +L++ + RELLGP GP+EV+ +PR+ Y VG LAPV +
Sbjct 6 STRVRADLMEFIERELLGPRGGPEEVIRGTPRAAYAVGALAPVTI 50
>gi|297561673|ref|YP_003680647.1| helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111]
gi|296846121|gb|ADH68141.1| helicase domain protein [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length=1314
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/78 (42%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query 67 DGTSITVRENLVDILARELLGPIRGPQEVLP---FSPRSQYLVGHLAPVKLTGAALID-- 121
+ TS VR+ L L R+LLGP GP E LP PR +YLVG L P T + D
Sbjct 66 EATSFEVRDELQHFLERDLLGPWDGPTEELPTRYSGPRERYLVGALGPRHQTPLSSRDSA 125
Query 122 DNAVQARANAEALAEGGG 139
D + A A+ A G G
Sbjct 126 DQLPDSDAEADGAASGEG 143
>gi|269126750|ref|YP_003300120.1| helicase domain-containing protein [Thermomonospora curvata DSM
43183]
gi|268311708|gb|ACY98082.1| helicase domain protein [Thermomonospora curvata DSM 43183]
Length=1287
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/48 (48%), Positives = 28/48 (59%), Gaps = 3/48 (6%)
Query 67 DGTSITVRENLVDILARELLGPIRGPQEVLP---FSPRSQYLVGHLAP 111
+ TS VR L ++ R+LLGP GP E LP PR +YLVG L P
Sbjct 50 EATSFEVRRELEKLIRRDLLGPWDGPTEELPPHILGPRERYLVGMLGP 97
>gi|111219759|ref|YP_710553.1| hypothetical protein FRAAL0262 [Frankia alni ACN14a]
gi|111147291|emb|CAJ58939.1| conserved hypothetical protein; putative superfamily II DNA and
RNA helicase [Frankia alni ACN14a]
Length=1340
Score = 42.7 bits (99), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/46 (48%), Positives = 27/46 (59%), Gaps = 3/46 (6%)
Query 69 TSITVRENLVDILARELLGPIRGPQEVL---PFSPRSQYLVGHLAP 111
TS VR+ D++ R+LLGP G QEV PR +YLVG L P
Sbjct 54 TSYEVRDAFADLVRRDLLGPWDGEQEVFHHRAMGPRERYLVGMLGP 99
>gi|254384439|ref|ZP_04999780.1| helicase [Streptomyces sp. Mg1]
gi|194343325|gb|EDX24291.1| helicase [Streptomyces sp. Mg1]
Length=1039
Score = 42.0 bits (97), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/38 (53%), Positives = 25/38 (66%), Gaps = 0/38 (0%)
Query 74 RENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAP 111
R+ LVD L+R+L+GP G EVL P QYL+G L P
Sbjct 4 RQELVDYLSRQLVGPAHGEDEVLDAPPDRQYLMGTLYP 41
>gi|298251772|ref|ZP_06975575.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
gi|297546364|gb|EFH80232.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
Length=1280
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/47 (49%), Positives = 31/47 (66%), Gaps = 1/47 (2%)
Query 69 TSITVRENLVDILARELLGPIRGPQEVLPFSP-RSQYLVGHLAPVKL 114
T VR+ L+D++ R+LLGP G +E + S R +YLVG LAP KL
Sbjct 147 TQYEVRDELMDMVLRDLLGPAGGAEEEIKESRVRDRYLVGALAPDKL 193
>gi|302554831|ref|ZP_07307173.1| helicase [Streptomyces viridochromogenes DSM 40736]
gi|302472449|gb|EFL35542.1| helicase [Streptomyces viridochromogenes DSM 40736]
Length=1049
Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/38 (53%), Positives = 24/38 (64%), Gaps = 0/38 (0%)
Query 74 RENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAP 111
R+ LVD L R+L+GP G EVL P QYL+G L P
Sbjct 4 RQELVDYLTRQLVGPAGGDDEVLDAPPDRQYLMGTLYP 41
>gi|313124722|ref|YP_004034981.1| hypothetical protein LDBND_1989 [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312281285|gb|ADQ62004.1| Hypothetical protein LDBND_1989 [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length=1113
Score = 39.3 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 28/91 (31%), Positives = 46/91 (51%), Gaps = 8/91 (8%)
Query 73 VRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKLTGAALIDDNAVQARANAE 132
VR+ ++D + +L+GP+ +EVL +PR YLVG L P + A ++ ++A + E
Sbjct 10 VRQKIIDAIRTDLIGPLE-TEEVLSENPRYAYLVGMLEPQRDENATDENEQEIEADIDYE 68
Query 133 ALAEGGGVPAYAADETTPT-PTTTPKTAHPS 162
+ + ADE P +T K PS
Sbjct 69 KNED------FTADEDDDNKPISTTKFQLPS 93
>gi|258650718|ref|YP_003199874.1| helicase domain-containing protein [Nakamurella multipartita
DSM 44233]
gi|258553943|gb|ACV76885.1| helicase domain protein [Nakamurella multipartita DSM 44233]
Length=1226
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/53 (42%), Positives = 34/53 (65%), Gaps = 7/53 (13%)
Query 69 TSITVRENLVDILARELLGPIRGPQEVLPFSPRS-----QYLVGHLAPVKLTG 116
T TVR+ +V++++R+LLGP G EV F+PR+ +YL+G L P + G
Sbjct 17 TGSTVRDGMVELVSRDLLGPWGG--EVEEFAPRAAGPRDRYLIGMLGPRTIPG 67
>gi|83648360|ref|YP_436795.1| hypothetical protein HCH_05715 [Hahella chejuensis KCTC 2396]
gi|83636403|gb|ABC32370.1| conserved hypothetical protein [Hahella chejuensis KCTC 2396]
Length=1049
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/38 (45%), Positives = 26/38 (69%), Gaps = 0/38 (0%)
Query 74 RENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAP 111
R ++V +L +EL+GP+ G +EVL P +YL+G L P
Sbjct 8 RSDIVMLLEKELVGPLGGEKEVLTDKPHKRYLMGVLFP 45
>gi|328885790|emb|CCA59029.1| helicase [Streptomyces venezuelae ATCC 10712]
Length=1286
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/54 (39%), Positives = 30/54 (56%), Gaps = 3/54 (5%)
Query 69 TSITVRENLVDILARELLGPIRGPQEVLPF---SPRSQYLVGHLAPVKLTGAAL 119
TS VRE L ++++R+LLGP G E PR +YLVG + P + +L
Sbjct 33 TSYQVREELGELISRDLLGPWDGSDEEFDHRAAGPRDRYLVGLIGPKRALSTSL 86
>gi|218709636|ref|YP_002417257.1| putative helicase family protein [Vibrio splendidus LGP32]
gi|218322655|emb|CAV18831.1| putative helicase family protein [Vibrio splendidus LGP32]
Length=1345
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/43 (47%), Positives = 27/43 (63%), Gaps = 1/43 (2%)
Query 71 ITVRENLVDILARELLGPIRGPQE-VLPFSPRSQYLVGHLAPV 112
+ VR+ L + +LLGP GP E +L S R +YLVG LAP+
Sbjct 138 VYVRDLLQHAVMDDLLGPANGPHEQILDMSVRDRYLVGRLAPL 180
>gi|344341849|ref|ZP_08772764.1| helicase domain-containing protein [Thiocapsa marina 5811]
gi|343798317|gb|EGV16276.1| helicase domain-containing protein [Thiocapsa marina 5811]
Length=1169
Score = 37.7 bits (86), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/75 (39%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query 73 VRENLVDILARELLGPIRGPQEVL---PFSPRSQYLVGHLAP--VKLTGAALIDDNAVQA 127
+R+ L D++ R+LLGP GP+E L +YLVG LAP ++ G L D+ A
Sbjct 9 LRDELTDMVVRDLLGPAGGPEEELNQYEDHVYQRYLVGMLAPKASEIAGGEL-DELAASD 67
Query 128 RANAEALAEGGGVPA 142
E A GVPA
Sbjct 68 GDEGEEGAPESGVPA 82
>gi|163848463|ref|YP_001636507.1| helicase domain-containing protein [Chloroflexus aurantiacus
J-10-fl]
gi|222526392|ref|YP_002570863.1| helicase domain-containing protein [Chloroflexus sp. Y-400-fl]
gi|163669752|gb|ABY36118.1| helicase domain protein [Chloroflexus aurantiacus J-10-fl]
gi|222450271|gb|ACM54537.1| helicase domain protein [Chloroflexus sp. Y-400-fl]
Length=1347
Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/43 (42%), Positives = 26/43 (61%), Gaps = 2/43 (4%)
Query 71 ITVRENLVDILARELLGPIRGPQEVLP--FSPRSQYLVGHLAP 111
+ +R+ L+ L RE+LGP G E+LP PR +Y+ G L P
Sbjct 1 MNIRDELLTALVREILGPRNGRYEILPQDEDPRQEYITGVLEP 43
>gi|295100453|emb|CBK97998.1| Helicase conserved C-terminal domain [Faecalibacterium prausnitzii
L2-6]
Length=1006
Score = 37.0 bits (84), Expect = 0.96, Method: Composition-based stats.
Identities = 17/39 (44%), Positives = 27/39 (70%), Gaps = 1/39 (2%)
Query 73 VRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAP 111
VR+ ++++L ++LLGP E L +PR +Y+VG LAP
Sbjct 10 VRQEVIEMLKKDLLGP-SSENETLNQNPRFEYIVGMLAP 47
>gi|320527416|ref|ZP_08028597.1| hypothetical protein HMPREF9430_00707 [Solobacterium moorei F0204]
gi|320132129|gb|EFW24678.1| hypothetical protein HMPREF9430_00707 [Solobacterium moorei F0204]
Length=1106
Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 18/37 (49%), Positives = 26/37 (71%), Gaps = 1/37 (2%)
Query 73 VRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHL 109
VR+ ++D + +L+GP R P+EVL +PR YLVG L
Sbjct 10 VRQRIIDDIRTDLIGP-REPKEVLTENPRFAYLVGML 45
>gi|323495149|ref|ZP_08100234.1| hypothetical protein VIBR0546_08445 [Vibrio brasiliensis LMG
20546]
gi|323310589|gb|EGA63768.1| hypothetical protein VIBR0546_08445 [Vibrio brasiliensis LMG
20546]
Length=1037
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/38 (43%), Positives = 24/38 (64%), Gaps = 0/38 (0%)
Query 74 RENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAP 111
R L+D L +L+GP+ G +E L +P +YL+G L P
Sbjct 8 RSELIDYLKTQLIGPVGGVEERLKDAPHKRYLMGTLFP 45
>gi|162451511|ref|YP_001613878.1| superfamily II DNA/RNA helicase [Sorangium cellulosum 'So ce
56']
gi|161162093|emb|CAN93398.1| superfamily II DNA and RNA helicase [Sorangium cellulosum 'So
ce 56']
Length=1124
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/49 (43%), Positives = 27/49 (56%), Gaps = 6/49 (12%)
Query 69 TSITVRENLVDILARELLGPI------RGPQEVLPFSPRSQYLVGHLAP 111
T VR +LV+ L +L+GP +G QE+LP P YL G LAP
Sbjct 2 TPADVRRHLVEALEADLIGPFVPDSHAQGGQEILPIPPSRWYLTGFLAP 50
>gi|302343994|ref|YP_003808523.1| helicase domain protein [Desulfarculus baarsii DSM 2075]
gi|301640607|gb|ADK85929.1| helicase domain protein [Desulfarculus baarsii DSM 2075]
Length=1236
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/82 (37%), Positives = 39/82 (48%), Gaps = 11/82 (13%)
Query 73 VRENLVDILARELLGPIRGP-QEVLPFSPRSQYLVGHLAPVKLTGAALIDDNAVQARANA 131
VRE L + +LLGP GP +E++ S R +YLVG LAP+ D A A A
Sbjct 94 VRELLQLAVIDDLLGPADGPVEEIVGMSVRDRYLVGKLAPM---------DTAPDA-AET 143
Query 132 EALAEGGGVPAYAADETTPTPT 153
+ E G + DE T T
Sbjct 144 DTFGESGHPDSEERDEEVDTST 165
>gi|74153214|dbj|BAC31727.2| unnamed protein product [Mus musculus]
Length=317
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (47%), Positives = 21/30 (70%), Gaps = 0/30 (0%)
Query 68 GTSITVRENLVDILARELLGPIRGPQEVLP 97
T++TVRENL D+ RE + PI Q+++P
Sbjct 105 STTVTVRENLNDVSQRESVDPINNQQDLIP 134
>gi|116751267|ref|YP_847954.1| helicase domain-containing protein [Syntrophobacter fumaroxidans
MPOB]
gi|116700331|gb|ABK19519.1| helicase domain protein [Syntrophobacter fumaroxidans MPOB]
Length=1285
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/41 (49%), Positives = 27/41 (66%), Gaps = 1/41 (2%)
Query 73 VRENLVDILARELLGPIRGP-QEVLPFSPRSQYLVGHLAPV 112
VRE L + +LLGP GP +E++ S R +YLVG LAP+
Sbjct 139 VRELLQLAVIDDLLGPADGPVEEIVGMSVRDRYLVGKLAPM 179
>gi|262200370|ref|YP_003271578.1| helicase [Gordonia bronchialis DSM 43247]
gi|262083717|gb|ACY19685.1| helicase domain protein [Gordonia bronchialis DSM 43247]
Length=1062
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/38 (45%), Positives = 25/38 (66%), Gaps = 0/38 (0%)
Query 74 RENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAP 111
RE +VD L +L+GP G EV+ +P S+Y++G L P
Sbjct 14 REAMVDALRGDLVGPGEGDDEVIGEAPLSRYIIGALWP 51
>gi|254423171|ref|ZP_05036889.1| Helicase conserved C-terminal domain protein [Synechococcus sp.
PCC 7335]
gi|196190660|gb|EDX85624.1| Helicase conserved C-terminal domain protein [Synechococcus sp.
PCC 7335]
Length=1306
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query 73 VRENLVDILARELLGPIRGPQEVLPFSPRS-QYLVGHLAPVKLTGAALID 121
+R+ L + ++LLGP GPQE + S +YLVG LAP K A ID
Sbjct 159 IRQELEARVVKDLLGPAEGPQEEIDDGKVSDRYLVGLLAPKKRDRQAQID 208
>gi|126454020|ref|YP_001067906.1| helicase, C-terminal [Burkholderia pseudomallei 1106a]
gi|242316734|ref|ZP_04815750.1| superfamily II DNA and RNA helicase [Burkholderia pseudomallei
1106b]
gi|126227662|gb|ABN91202.1| helicase, C-terminal [Burkholderia pseudomallei 1106a]
gi|242139973|gb|EES26375.1| superfamily II DNA and RNA helicase [Burkholderia pseudomallei
1106b]
Length=1332
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (63%), Gaps = 1/40 (2%)
Query 73 VRENLVDILARELLGPIRGPQE-VLPFSPRSQYLVGHLAP 111
VRE L + +LLGP GP E ++ S R +YLVG LAP
Sbjct 139 VRELLQLAVVDDLLGPAGGPHERIVDMSVRDRYLVGKLAP 178
>gi|325003372|ref|ZP_08124484.1| helicase domain protein [Pseudonocardia sp. P1]
Length=1185
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/62 (41%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query 95 VLPFSPRSQYLVGHLAPVKLTGA----ALIDD-NAVQARANAEALAEGGGVPAYAADETT 149
+L SP S YLVG +AP +LT DD A +A E GVP A DE+T
Sbjct 1 MLSGSPDSAYLVGRIAPARLTAGRDDPTTADDPEAATDVGDAVDADESRGVPVTAVDEST 60
Query 150 PT 151
P+
Sbjct 61 PS 62
>gi|290956129|ref|YP_003487311.1| helicase [Streptomyces scabiei 87.22]
gi|260645655|emb|CBG68746.1| putative helicase family protein [Streptomyces scabiei 87.22]
Length=1041
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/38 (48%), Positives = 22/38 (58%), Gaps = 0/38 (0%)
Query 74 RENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAP 111
R LV L R+L+GP G E+L P QYL+G L P
Sbjct 4 RHELVAYLHRQLVGPAGGEHEMLEAPPDRQYLMGTLYP 41
>gi|88706074|ref|ZP_01103782.1| helicase family protein [Congregibacter litoralis KT71]
gi|88699788|gb|EAQ96899.1| helicase family protein [Congregibacter litoralis KT71]
Length=1333
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/115 (33%), Positives = 49/115 (43%), Gaps = 25/115 (21%)
Query 43 TCQRVRRHWMIDTTEAAYRLTYQ--PDGTSITVRENLVDIL----ARELLGPIRGPQE-V 95
T Q R W + EA RLT + P+ I E + D+L +LLGP GP E +
Sbjct 95 TSQISRLEWTL-FAEAIPRLTNRTLPEVPLIEDVEYVRDLLQISVMDDLLGPANGPMEQI 153
Query 96 LPFSPRSQYLVGHLAPVKLTGAALIDDNAVQARANAEALAEGGGVPAYAADETTP 150
S R +YLVG LAP+ +A A +G GV D+ P
Sbjct 154 SDMSVRDRYLVGRLAPL-----------------DAAAKGDGLGVDGSGEDDEDP 191
>gi|327289924|ref|XP_003229674.1| PREDICTED: zinc finger protein 167-like [Anolis carolinensis]
Length=625
Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 28/91 (31%), Positives = 38/91 (42%), Gaps = 7/91 (7%)
Query 7 AQYQLLVVGV----SPWDTPSPSGRISWGSA---WPHQARRAQTCQRVRRHWMIDTTEAA 59
AQ+Q + GV SPW P G +SWG PH A T Q++R + T
Sbjct 81 AQWQQFLGGVQSPLSPWGARLPPGVLSWGDTKVPMPHFEGMASTSQQMRERQFLQTPLPN 140
Query 60 YRLTYQPDGTSITVRENLVDILARELLGPIR 90
QPD V+E + + A + P R
Sbjct 141 IDREAQPDPEQRKVKEEVDNEEAVDTEPPCR 171
>gi|344338976|ref|ZP_08769906.1| helicase domain-containing protein [Thiocapsa marina 5811]
gi|343800896|gb|EGV18840.1| helicase domain-containing protein [Thiocapsa marina 5811]
Length=1169
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/75 (38%), Positives = 38/75 (51%), Gaps = 6/75 (8%)
Query 73 VRENLVDILARELLGPIRGPQEVL---PFSPRSQYLVGHLAP--VKLTGAALIDDNAVQA 127
+R+ L +++ R+LLGP GP E L +YLVG LAP ++ G L D+ A
Sbjct 9 LRDELTEMVVRDLLGPAGGPDEELNQYEDHVYQRYLVGMLAPKASEIAGGEL-DELAASD 67
Query 128 RANAEALAEGGGVPA 142
E A GVPA
Sbjct 68 GDEGEEGAPESGVPA 82
>gi|240948985|ref|ZP_04753339.1| ATP-dependent helicase HepA [Actinobacillus minor NM305]
gi|240296572|gb|EER47190.1| ATP-dependent helicase HepA [Actinobacillus minor NM305]
Length=969
Score = 34.7 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 22/73 (31%), Positives = 38/73 (53%), Gaps = 8/73 (10%)
Query 14 VGVSPWDTPSPS-GRISWGSAWPHQARRAQTCQRVRRHWMIDTTEAAYRLTYQPDGTSIT 72
V +P+DT S I W SA PH+A + + CQ W + + A+ L + + S+
Sbjct 246 VSENPFDTESMVIASIDWLSAKPHRAEQVKACQ-----WDMLIVDEAHHLAWSEEAPSVA 300
Query 73 VRENLVDILAREL 85
+ LV+ LA+++
Sbjct 301 YQ--LVEALAKQI 311
>gi|331090150|ref|ZP_08339038.1| hypothetical protein HMPREF1025_02621 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330402096|gb|EGG81668.1| hypothetical protein HMPREF1025_02621 [Lachnospiraceae bacterium
3_1_46FAA]
Length=1107
Score = 34.7 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 17/37 (46%), Positives = 25/37 (68%), Gaps = 1/37 (2%)
Query 73 VRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHL 109
VR+ ++D + +L+GP R +EVL +PR YLVG L
Sbjct 10 VRQKIIDAIRTDLIGP-REKEEVLEENPRYAYLVGML 45
>gi|83860019|ref|ZP_00953539.1| PnbA [Oceanicaulis alexandrii HTCC2633]
gi|83852378|gb|EAP90232.1| PnbA [Oceanicaulis alexandrii HTCC2633]
Length=511
Score = 34.7 bits (78), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/48 (40%), Positives = 26/48 (55%), Gaps = 1/48 (2%)
Query 67 DGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVKL 114
D ++ + + D+L+ GP+ GP E LP SPRS G L PV L
Sbjct 284 DASADAILDTAADVLSGYDYGPVHGPDE-LPVSPRSALESGTLNPVPL 330
>gi|167851519|ref|ZP_02477027.1| helicase, C-terminal [Burkholderia pseudomallei B7210]
Length=1323
Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/40 (48%), Positives = 25/40 (63%), Gaps = 1/40 (2%)
Query 73 VRENLVDILARELLGPIRGPQE-VLPFSPRSQYLVGHLAP 111
+RE L + +LLGP GP E ++ S R +YLVG LAP
Sbjct 130 IRELLQLAVVDDLLGPAGGPYERIVDMSVRDRYLVGKLAP 169
>gi|288919499|ref|ZP_06413830.1| helicase domain protein [Frankia sp. EUN1f]
gi|288349102|gb|EFC83348.1| helicase domain protein [Frankia sp. EUN1f]
Length=1058
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/44 (39%), Positives = 24/44 (55%), Gaps = 0/44 (0%)
Query 68 GTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAP 111
G+ R +V+ L R+L+GP+ G EVL P +YL L P
Sbjct 2 GSRADDRRKIVEYLGRQLVGPVGGDDEVLLEEPAGRYLTAILYP 45
>gi|340398413|ref|YP_004727438.1| hypothetical protein SALIVB_0608 [Streptococcus salivarius CCHSS3]
gi|338742406|emb|CCB92911.1| hypothetical protein SALIVB_0608 [Streptococcus salivarius CCHSS3]
Length=3443
Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 27/88 (31%), Positives = 45/88 (52%), Gaps = 7/88 (7%)
Query 54 DTTEAAYRLTYQPDGTSITVRENLVDILARELLGPIRGPQEVLPFSPRSQYLVGHLAPVK 113
DT A R++ DGT+ + +N+VD +E ++ P+E F+P +Y+V
Sbjct 1951 DTMVATVRVSISHDGTAKAIVKNVVDAPDKEFNNKVKPPEEP-KFNPE-KYVVS-TEKFD 2007
Query 114 LTGAALIDDNAVQA----RANAEALAEG 137
+TG L+DD++ A NA A+G
Sbjct 2008 ITGDKLVDDDSELADKYGDTNANPYADG 2035
>gi|325284134|ref|YP_004256675.1| peptidase M16 domain-containing protein [Deinococcus proteolyticus
MRP]
gi|324315943|gb|ADY27058.1| peptidase M16 domain protein [Deinococcus proteolyticus MRP]
Length=918
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query 53 IDTTEAAYRLTYQPDGTSITVRENL-----VDILARELLGPIRGPQEVLP 97
+D +A YR YQPD +T+ N + +LARE GPI P LP
Sbjct 215 VDRLQAFYRTYYQPDNAVVTLAGNFDEAEALGLLARE-FGPIPAPSRTLP 263
>gi|223042060|ref|ZP_03612236.1| ATP-dependent helicase HepA [Actinobacillus minor 202]
gi|223017135|gb|EEF15571.1| ATP-dependent helicase HepA [Actinobacillus minor 202]
Length=969
Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 22/73 (31%), Positives = 38/73 (53%), Gaps = 8/73 (10%)
Query 14 VGVSPWDTPSPS-GRISWGSAWPHQARRAQTCQRVRRHWMIDTTEAAYRLTYQPDGTSIT 72
V +P+DT S I W SA PH+A + + CQ W + + A+ L + + S+
Sbjct 246 VSENPFDTESMVIASIDWLSAKPHRAEQVKACQ-----WDMLIVDEAHHLAWSEEAPSVA 300
Query 73 VRENLVDILAREL 85
+ LV+ LA+++
Sbjct 301 YQ--LVERLAKQI 311
>gi|26340614|dbj|BAC33969.1| unnamed protein product [Mus musculus]
Length=585
Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 14/29 (49%), Positives = 21/29 (73%), Gaps = 0/29 (0%)
Query 69 TSITVRENLVDILARELLGPIRGPQEVLP 97
T++TVRENL D+ RE + PI Q+++P
Sbjct 140 TTVTVRENLNDVSQRESVDPINNQQDLIP 168
>gi|53718404|ref|YP_107390.1| putative helicase family protein [Burkholderia pseudomallei K96243]
gi|52208818|emb|CAH34757.1| putative helicase family protein [Burkholderia pseudomallei K96243]
Length=1186
Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/42 (43%), Positives = 27/42 (65%), Gaps = 1/42 (2%)
Query 71 ITVRENLVDILARELLGPIRGP-QEVLPFSPRSQYLVGHLAP 111
+ +R L +++ RELLGP GP +EV + +YLVG L+P
Sbjct 19 VQLRAELEELVQRELLGPRGGPDEEVAETRVQDRYLVGMLSP 60
Lambda K H
0.316 0.131 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129330420882
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40