BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1974 Length=125 Score E Sequences producing significant alignments: (Bits) Value gi|15609111|ref|NP_216490.1| hypothetical protein Rv1974 [Mycoba... 254 3e-66 gi|298525468|ref|ZP_07012877.1| conserved hypothetical protein [... 244 4e-63 gi|108798502|ref|YP_638699.1| hypothetical protein Mmcs_1532 [My... 149 1e-34 gi|119867602|ref|YP_937554.1| hypothetical protein Mkms_1555 [My... 149 1e-34 gi|118462871|ref|YP_881089.1| hypothetical protein MAV_1869 [Myc... 147 4e-34 gi|126436678|ref|YP_001072369.1| hypothetical protein Mjls_4105 ... 145 2e-33 gi|296171118|ref|ZP_06852571.1| conserved hypothetical protein [... 142 1e-32 gi|120406525|ref|YP_956354.1| hypothetical protein Mvan_5583 [My... 127 7e-28 gi|240170710|ref|ZP_04749369.1| hypothetical protein MkanA1_1545... 123 1e-26 gi|118471627|ref|YP_884767.1| hypothetical protein MSMEG_0354 [M... 120 7e-26 gi|145221124|ref|YP_001131802.1| hypothetical protein Mflv_0521 ... 118 3e-25 gi|145221817|ref|YP_001132495.1| hypothetical protein Mflv_1225 ... 118 4e-25 gi|120401587|ref|YP_951416.1| hypothetical protein Mvan_0569 [My... 117 5e-25 gi|108798675|ref|YP_638872.1| hypothetical protein Mmcs_1707 [My... 114 4e-24 gi|183982895|ref|YP_001851186.1| hypothetical protein MMAR_2891 ... 100 6e-20 gi|342857619|ref|ZP_08714275.1| hypothetical protein MCOL_02045 ... 98.2 3e-19 gi|118466692|ref|YP_881864.1| hypothetical protein MAV_2673 [Myc... 88.2 4e-16 gi|240171347|ref|ZP_04750006.1| hypothetical protein MkanA1_1869... 45.8 0.002 gi|336459617|gb|EGO38552.1| Protein of unknown function (DUF732)... 42.4 0.023 gi|41409516|ref|NP_962352.1| hypothetical protein MAP3418 [Mycob... 42.0 0.028 gi|254820682|ref|ZP_05225683.1| hypothetical protein MintA_12176... 41.6 0.044 gi|183981255|ref|YP_001849546.1| hypothetical protein MMAR_1233 ... 41.2 0.055 gi|118618122|ref|YP_906454.1| hypothetical protein MUL_2657 [Myc... 40.8 0.072 gi|342861513|ref|ZP_08718160.1| hypothetical protein MCOL_21611 ... 40.4 0.10 gi|118466072|ref|YP_883411.1| hypothetical protein MAV_4271 [Myc... 39.7 0.15 gi|296168904|ref|ZP_06850573.1| conserved hypothetical protein [... 37.7 0.59 gi|145222236|ref|YP_001132914.1| hypothetical protein Mflv_1644 ... 37.4 0.68 gi|120406051|ref|YP_955880.1| hypothetical protein Mvan_5103 [My... 37.4 0.69 gi|339755806|gb|AEJ95809.1| gp40 [Mycobacterium phage Adephagia] 37.0 0.99 gi|296164252|ref|ZP_06846842.1| conserved hypothetical protein [... 36.6 1.2 gi|118462859|ref|YP_883960.1| hypothetical protein MAV_4836 [Myc... 36.6 1.4 gi|296164250|ref|ZP_06846841.1| conserved hypothetical protein [... 35.4 2.6 gi|339782277|gb|AEK08001.1| gp42 [Mycobacterium phage Anaya] 35.4 2.7 gi|108801494|ref|YP_641691.1| hypothetical protein Mmcs_4531 [My... 35.4 2.8 gi|254820154|ref|ZP_05225155.1| hypothetical protein MintA_09516... 35.0 4.2 gi|148251174|gb|ABQ53573.1| porin [Neisseria meningitidis] 34.7 4.9 gi|118619212|ref|YP_907544.1| hypothetical protein MUL_4013 [Myc... 34.3 6.0 gi|304360892|ref|YP_003857012.1| gp40 [Mycobacterium phage CrimD... 34.3 6.2 gi|298242679|ref|ZP_06966486.1| hypothetical protein Krac_11162 ... 34.3 6.8 gi|109392349|ref|YP_655579.1| gp62 [Mycobacterium phage Halo] >g... 33.9 7.6 gi|343171724|gb|AEL98529.1| gp57 [Mycobacterium phage Liefie] 33.9 8.0 gi|344173705|emb|CCA88877.1| endodeoxyribonuclease, subunit C of... 33.9 8.8 >gi|15609111|ref|NP_216490.1| hypothetical protein Rv1974 [Mycobacterium tuberculosis H37Rv] gi|15841449|ref|NP_336486.1| hypothetical protein MT2025 [Mycobacterium tuberculosis CDC1551] gi|148661783|ref|YP_001283306.1| hypothetical protein MRA_1985 [Mycobacterium tuberculosis H37Ra] 41 more sequence titles Length=125 Score = 254 bits (649), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 124/125 (99%), Positives = 125/125 (100%), Gaps = 0/125 (0%) Query 1 VQRQSLMPQQTLAAGVFVGALLCGVVTAAVPPHARADVVAYLVNVTVRPGYNFANADAAL 60 +QRQSLMPQQTLAAGVFVGALLCGVVTAAVPPHARADVVAYLVNVTVRPGYNFANADAAL Sbjct 1 MQRQSLMPQQTLAAGVFVGALLCGVVTAAVPPHARADVVAYLVNVTVRPGYNFANADAAL 60 Query 61 SYGHGLCEKVSRGRPYAQIIADVKADFDTRDQYQASYLLSQAVNELCPALIWQLRNSAVD 120 SYGHGLCEKVSRGRPYAQIIADVKADFDTRDQYQASYLLSQAVNELCPALIWQLRNSAVD Sbjct 61 SYGHGLCEKVSRGRPYAQIIADVKADFDTRDQYQASYLLSQAVNELCPALIWQLRNSAVD 120 Query 121 NRRSG 125 NRRSG Sbjct 121 NRRSG 125 >gi|298525468|ref|ZP_07012877.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308231995|ref|ZP_07414543.2| conserved membrane protein [Mycobacterium tuberculosis SUMu001] gi|308369577|ref|ZP_07418324.2| conserved membrane protein [Mycobacterium tuberculosis SUMu002] 23 more sequence titles Length=119 Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 119/119 (100%), Positives = 119/119 (100%), Gaps = 0/119 (0%) Query 7 MPQQTLAAGVFVGALLCGVVTAAVPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGL 66 MPQQTLAAGVFVGALLCGVVTAAVPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGL Sbjct 1 MPQQTLAAGVFVGALLCGVVTAAVPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGL 60 Query 67 CEKVSRGRPYAQIIADVKADFDTRDQYQASYLLSQAVNELCPALIWQLRNSAVDNRRSG 125 CEKVSRGRPYAQIIADVKADFDTRDQYQASYLLSQAVNELCPALIWQLRNSAVDNRRSG Sbjct 61 CEKVSRGRPYAQIIADVKADFDTRDQYQASYLLSQAVNELCPALIWQLRNSAVDNRRSG 119 >gi|108798502|ref|YP_638699.1| hypothetical protein Mmcs_1532 [Mycobacterium sp. MCS] gi|108768921|gb|ABG07643.1| conserved hypothetical protein [Mycobacterium sp. MCS] Length=123 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 70/94 (75%), Positives = 79/94 (85%), Gaps = 0/94 (0%) Query 29 AVPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFD 88 A PP A AD VAYLVNVTVRPGYNFANADAALSYG+G+C K++ GR Y +IADVKADF Sbjct 26 AEPPTAHADAVAYLVNVTVRPGYNFANADAALSYGNGVCRKIADGRSYGDLIADVKADFR 85 Query 89 TRDQYQASYLLSQAVNELCPALIWQLRNSAVDNR 122 T D+YQASYL++QA NELCPA+IWQLRNSA R Sbjct 86 TTDEYQASYLITQAANELCPAMIWQLRNSAAGYR 119 >gi|119867602|ref|YP_937554.1| hypothetical protein Mkms_1555 [Mycobacterium sp. KMS] gi|119693691|gb|ABL90764.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=100 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 70/94 (75%), Positives = 79/94 (85%), Gaps = 0/94 (0%) Query 29 AVPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFD 88 A PP A AD VAYLVNVTVRPGYNFANADAALSYG+G+C K++ GR Y +IADVKADF Sbjct 3 AEPPTAHADAVAYLVNVTVRPGYNFANADAALSYGNGVCRKIADGRSYGDLIADVKADFR 62 Query 89 TRDQYQASYLLSQAVNELCPALIWQLRNSAVDNR 122 T D+YQASYL++QA NELCPA+IWQLRNSA R Sbjct 63 TTDEYQASYLITQAANELCPAMIWQLRNSAAGYR 96 >gi|118462871|ref|YP_881089.1| hypothetical protein MAV_1869 [Mycobacterium avium 104] gi|118164158|gb|ABK65055.1| conserved hypothetical protein [Mycobacterium avium 104] Length=126 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 69/101 (69%), Positives = 78/101 (78%), Gaps = 0/101 (0%) Query 18 VGALLCGVVTAAVPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRPYA 77 V ALLCG P A AD VAYL+NVTVRPGYNFANAD ALSYG +C+K+++GRPYA Sbjct 18 VAALLCGAAIVTNTPTASADTVAYLINVTVRPGYNFANADHALSYGRAICDKIAQGRPYA 77 Query 78 QIIADVKADFDTRDQYQASYLLSQAVNELCPALIWQLRNSA 118 Q++ DVK DF T D YQASYL+SQA ELCPA IWQLR SA Sbjct 78 QLVGDVKRDFKTNDGYQASYLISQAAQELCPAQIWQLRRSA 118 >gi|126436678|ref|YP_001072369.1| hypothetical protein Mjls_4105 [Mycobacterium sp. JLS] gi|126236478|gb|ABN99878.1| protein of unknown function DUF732 [Mycobacterium sp. JLS] Length=120 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 69/116 (60%), Positives = 84/116 (73%), Gaps = 0/116 (0%) Query 7 MPQQTLAAGVFVGALLCGVVTAAVPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGL 66 M + L AG+ G + P A AD VAYLVNVTVRPGYNFANAD AL+YG G+ Sbjct 1 MTHRKLLAGLVAAFATMGGMLTVGAPTAAADTVAYLVNVTVRPGYNFANADHALAYGRGV 60 Query 67 CEKVSRGRPYAQIIADVKADFDTRDQYQASYLLSQAVNELCPALIWQLRNSAVDNR 122 C K+++GR YAQ++ D+KADF T D++QASYL+SQA ELCP+LIWQLRNSA R Sbjct 61 CAKIAQGRGYAQLVGDIKADFRTSDEFQASYLISQAAQELCPSLIWQLRNSAAGYR 116 >gi|296171118|ref|ZP_06852571.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894374|gb|EFG74127.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=119 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 68/99 (69%), Positives = 79/99 (80%), Gaps = 0/99 (0%) Query 20 ALLCGVVTAAVPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRPYAQI 79 A + V+ PP ARAD VAYLVNVTVRPGYNFA+ADAAL+YG+G+C+KV G YAQI Sbjct 10 AAVAAVLLCTAPPAARADAVAYLVNVTVRPGYNFADADAALAYGNGICDKVRSGERYAQI 69 Query 80 IADVKADFDTRDQYQASYLLSQAVNELCPALIWQLRNSA 118 + DVK DFD D++QASYL+SQAV ELCPA IWQLR SA Sbjct 70 VTDVKKDFDNTDEHQASYLISQAVGELCPAQIWQLRQSA 108 >gi|120406525|ref|YP_956354.1| hypothetical protein Mvan_5583 [Mycobacterium vanbaalenii PYR-1] gi|119959343|gb|ABM16348.1| protein of unknown function DUF732 [Mycobacterium vanbaalenii PYR-1] Length=114 Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 64/104 (62%), Positives = 74/104 (72%), Gaps = 1/104 (0%) Query 15 GVFVGALLCGVVTAAVPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVSRGR 74 GV LLC A P A ADVVAYLVNV VRPGYNF NADAA+ YG +C++V+ Sbjct 6 GVLSAGLLCSASLIAAPA-ANADVVAYLVNVHVRPGYNFPNADAAIGYGRTICDRVAAKM 64 Query 75 PYAQIIADVKADFDTRDQYQASYLLSQAVNELCPALIWQLRNSA 118 YA+++ VKADF T D YQA YL++QAVNELCPA IWQLR SA Sbjct 65 SYAELVNQVKADFRTTDYYQAGYLINQAVNELCPAQIWQLRQSA 108 >gi|240170710|ref|ZP_04749369.1| hypothetical protein MkanA1_15450 [Mycobacterium kansasii ATCC 12478] Length=101 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 57/78 (74%), Positives = 65/78 (84%), Gaps = 0/78 (0%) Query 41 YLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDTRDQYQASYLLS 100 YLVNVTVRPGYNF +A AL+YG+G+CEKV G Y QII +VK+DFDT D+YQASYL+S Sbjct 15 YLVNVTVRPGYNFPDAATALAYGNGICEKVRAGERYPQIITEVKSDFDTSDEYQASYLIS 74 Query 101 QAVNELCPALIWQLRNSA 118 QAV ELCPA IWQLR SA Sbjct 75 QAVGELCPAQIWQLRQSA 92 >gi|118471627|ref|YP_884767.1| hypothetical protein MSMEG_0354 [Mycobacterium smegmatis str. MC2 155] gi|118172914|gb|ABK73810.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=113 Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 55/85 (65%), Positives = 69/85 (82%), Gaps = 1/85 (1%) Query 41 YLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDTRDQYQASYLLS 100 YL+NVTVRPGYNFA+ DAAL+YG G+C K++ G Y Q++ DV+ DF T D++QASYL+S Sbjct 27 YLLNVTVRPGYNFASPDAALTYGRGVCAKLAEGTAYGQLVDDVRRDFGTADEFQASYLVS 86 Query 101 QAVNELCPALIWQLRNSAVDNRRSG 125 QAVNELCP +IWQLR+SA RSG Sbjct 87 QAVNELCPEMIWQLRSSA-SGYRSG 110 >gi|145221124|ref|YP_001131802.1| hypothetical protein Mflv_0521 [Mycobacterium gilvum PYR-GCK] gi|315441913|ref|YP_004074792.1| hypothetical protein Mspyr1_02380 [Mycobacterium sp. Spyr1] gi|145213610|gb|ABP43014.1| protein of unknown function DUF732 [Mycobacterium gilvum PYR-GCK] gi|315260216|gb|ADT96957.1| hypothetical protein Mspyr1_02380 [Mycobacterium sp. Spyr1] Length=117 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 56/89 (63%), Positives = 68/89 (77%), Gaps = 0/89 (0%) Query 30 VPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDT 89 + P A AD VAYLVNV VRPGYNF NA+AA+ YG +C++V+ YAQ++ VKADF T Sbjct 18 IAPPAGADTVAYLVNVHVRPGYNFPNAEAAIGYGRTICDRVAAKMNYAQLVDQVKADFRT 77 Query 90 RDQYQASYLLSQAVNELCPALIWQLRNSA 118 D YQ +YL++QAVNELCPA IWQLR SA Sbjct 78 SDYYQGAYLINQAVNELCPAQIWQLRQSA 106 >gi|145221817|ref|YP_001132495.1| hypothetical protein Mflv_1225 [Mycobacterium gilvum PYR-GCK] gi|315446446|ref|YP_004079325.1| hypothetical protein Mspyr1_49560 [Mycobacterium sp. Spyr1] gi|145214303|gb|ABP43707.1| protein of unknown function DUF732 [Mycobacterium gilvum PYR-GCK] gi|315264749|gb|ADU01491.1| Protein of unknown function (DUF732) [Mycobacterium sp. Spyr1] Length=114 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 62/105 (60%), Positives = 74/105 (71%), Gaps = 3/105 (2%) Query 17 FVGALLCGVVTAAV---PPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVSRG 73 V ALL V +AV P A AD VAYLVNV VRPGYNF NA+AA+ YG+ +C +V+ Sbjct 4 LVRALLLTAVPSAVLIGAPAANADTVAYLVNVHVRPGYNFPNAEAAIGYGNSVCARVAGH 63 Query 74 RPYAQIIADVKADFDTRDQYQASYLLSQAVNELCPALIWQLRNSA 118 Y +++ VKADF T D YQA YL++QAVNELCPA IWQLR SA Sbjct 64 MSYRELVDQVKADFRTTDYYQAGYLINQAVNELCPAQIWQLRQSA 108 >gi|120401587|ref|YP_951416.1| hypothetical protein Mvan_0569 [Mycobacterium vanbaalenii PYR-1] gi|119954405|gb|ABM11410.1| protein of unknown function DUF732 [Mycobacterium vanbaalenii PYR-1] Length=112 Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 56/89 (63%), Positives = 68/89 (77%), Gaps = 0/89 (0%) Query 30 VPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDT 89 + P A AD VAYLVNV VRPGYNF NA+AA+ YG +C++V+ YAQ++ VKADF T Sbjct 18 IAPPAGADTVAYLVNVHVRPGYNFPNAEAAIGYGRTICDRVAAKMNYAQLVDQVKADFRT 77 Query 90 RDQYQASYLLSQAVNELCPALIWQLRNSA 118 D YQ +YL++QAVNELCPA IWQLR SA Sbjct 78 SDYYQGAYLINQAVNELCPAQIWQLRQSA 106 >gi|108798675|ref|YP_638872.1| hypothetical protein Mmcs_1707 [Mycobacterium sp. MCS] gi|119867775|ref|YP_937727.1| hypothetical protein Mkms_1735 [Mycobacterium sp. KMS] gi|119867791|ref|YP_937743.1| hypothetical protein Mkms_1751 [Mycobacterium sp. KMS] gi|126434275|ref|YP_001069966.1| hypothetical protein Mjls_1685 [Mycobacterium sp. JLS] gi|108769094|gb|ABG07816.1| protein of unknown function DUF732 [Mycobacterium sp. MCS] gi|119693864|gb|ABL90937.1| protein of unknown function DUF732 [Mycobacterium sp. KMS] gi|119693880|gb|ABL90953.1| protein of unknown function DUF732 [Mycobacterium sp. KMS] gi|126234075|gb|ABN97475.1| protein of unknown function DUF732 [Mycobacterium sp. JLS] Length=117 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 54/83 (66%), Positives = 65/83 (79%), Gaps = 0/83 (0%) Query 36 ADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDTRDQYQA 95 AD VAYLVNV VRPGYNF NA+AA+ YG +C++V+ YAQ++ VKADF T D YQ Sbjct 24 ADTVAYLVNVHVRPGYNFPNAEAAIGYGRTICDRVAAEMNYAQLVDQVKADFRTADYYQG 83 Query 96 SYLLSQAVNELCPALIWQLRNSA 118 +YL++QAVNELCPA IWQLR SA Sbjct 84 AYLINQAVNELCPAQIWQLRQSA 106 >gi|183982895|ref|YP_001851186.1| hypothetical protein MMAR_2891 [Mycobacterium marinum M] gi|183176221|gb|ACC41331.1| conserved hypothetical secreted protein [Mycobacterium marinum M] Length=122 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 57/115 (50%), Positives = 73/115 (64%), Gaps = 3/115 (2%) Query 8 PQQTLAAGVFVGALLCGVVTAAVPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLC 67 P AA V +GA+ G+ T A A A V Y+ NV VR Y+F N DA + YGHG+C Sbjct 7 PIALAAATVALGAIPMGMATRAYA--APAPEVEYVYNVMVRRHYDFPNNDA-IGYGHGIC 63 Query 68 EKVSRGRPYAQIIADVKADFDTRDQYQASYLLSQAVNELCPALIWQLRNSAVDNR 122 KVS G+ YAQ++ DVK D D++ A+YL+S AVN LCP +WQLRNSA + R Sbjct 64 GKVSGGQSYAQVMGDVKNDVTPNDEFAANYLVSYAVNLLCPEQVWQLRNSAANYR 118 >gi|342857619|ref|ZP_08714275.1| hypothetical protein MCOL_02045 [Mycobacterium colombiense CECT 3035] gi|342134952|gb|EGT88118.1| hypothetical protein MCOL_02045 [Mycobacterium colombiense CECT 3035] Length=87 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 49/80 (62%), Positives = 58/80 (73%), Gaps = 1/80 (1%) Query 39 VAYLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDTRDQYQASYL 98 + YL +VTVR YNF N DA LSYG G+C+ V+RG Y QI+ DVK D D+Y A+YL Sbjct 1 MEYLYDVTVRRHYNFPNNDA-LSYGRGICDSVTRGESYGQIMGDVKRDVTPSDEYAANYL 59 Query 99 LSQAVNELCPALIWQLRNSA 118 +S AVN LCPA IWQLRNSA Sbjct 60 VSYAVNILCPAEIWQLRNSA 79 >gi|118466692|ref|YP_881864.1| hypothetical protein MAV_2673 [Mycobacterium avium 104] gi|118167979|gb|ABK68876.1| conserved hypothetical protein [Mycobacterium avium 104] Length=121 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 40/75 (54%), Positives = 52/75 (70%), Gaps = 1/75 (1%) Query 51 YNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDTRDQYQASYLLSQAVNELCPAL 110 Y F + DA L YGHG+C+KV RG Y Q++ +VK+D D++ A+YL+S AVN LCP L Sbjct 39 YGFPDNDA-LGYGHGICDKVGRGEGYGQVMGEVKSDVTPNDEFAANYLVSYAVNLLCPEL 97 Query 111 IWQLRNSAVDNRRSG 125 IWQLRNSA + G Sbjct 98 IWQLRNSAAGYQPPG 112 >gi|240171347|ref|ZP_04750006.1| hypothetical protein MkanA1_18691 [Mycobacterium kansasii ATCC 12478] Length=118 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/96 (36%), Positives = 50/96 (53%), Gaps = 5/96 (5%) Query 15 GVFVGALLCGVVTAAVPPHARADVV--AYLVNVTVRPGYNFANADAALSYGHGLCEKVSR 72 G+ V L G+ A+P A+AD + A+L N G NFA+ AA+ GH +C+++ Sbjct 19 GLVVITGLLGLAVVAIPT-AKADGIDDAFL-NAVKAKGINFASPQAAILVGHQVCDELDL 76 Query 73 GRPYAQIIADVKADFDTRDQYQASYLLSQAVNELCP 108 GR A I D+ A D Y+A Y + +V CP Sbjct 77 GRHKADIANDL-AKGGNLDGYRAGYFVGLSVAAYCP 111 >gi|336459617|gb|EGO38552.1| Protein of unknown function (DUF732) [Mycobacterium avium subsp. paratuberculosis S397] Length=117 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/79 (30%), Positives = 41/79 (52%), Gaps = 2/79 (2%) Query 30 VPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDT 89 P HA + A+L + + G N+ + DAA++ GH +C ++ G+ Q+ +V + T Sbjct 32 TPAHATSADDAFLAALKAK-GINYESPDAAVNSGHTVCHELDMGQTPEQVANNVLSS-ST 89 Query 90 RDQYQASYLLSQAVNELCP 108 D Y A Y + ++ CP Sbjct 90 LDSYHAGYFVGVSIKAYCP 108 >gi|41409516|ref|NP_962352.1| hypothetical protein MAP3418 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398347|gb|AAS05968.1| hypothetical protein MAP_3418 [Mycobacterium avium subsp. paratuberculosis K-10] Length=149 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/79 (30%), Positives = 41/79 (52%), Gaps = 2/79 (2%) Query 30 VPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDT 89 P HA + A+L + + G N+ + DAA++ GH +C ++ G+ Q+ +V + T Sbjct 64 TPAHATSADDAFLAALKAK-GINYESPDAAVNSGHTVCHELDMGQTPEQVANNVLSS-ST 121 Query 90 RDQYQASYLLSQAVNELCP 108 D Y A Y + ++ CP Sbjct 122 LDSYHAGYFVGVSIKAYCP 140 >gi|254820682|ref|ZP_05225683.1| hypothetical protein MintA_12176 [Mycobacterium intracellulare ATCC 13950] Length=119 Score = 41.6 bits (96), Expect = 0.044, Method: Compositional matrix adjust. Identities = 27/97 (28%), Positives = 47/97 (49%), Gaps = 2/97 (2%) Query 12 LAAGVFVGALLCGVVTAAVPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVS 71 LA G A L +TA HA + A+L + + G NF + +A ++ GH +C ++ Sbjct 16 LAIGAVPVAGLLSAMTAPASAHATSADDAFLAALKAK-GINFESPEAVVNSGHTVCHELD 74 Query 72 RGRPYAQIIADVKADFDTRDQYQASYLLSQAVNELCP 108 G+ Q+ +V + + D Y A Y + ++ CP Sbjct 75 SGQTPEQVANNVLSS-SSLDSYHAGYFVGVSIKAYCP 110 >gi|183981255|ref|YP_001849546.1| hypothetical protein MMAR_1233 [Mycobacterium marinum M] gi|183174581|gb|ACC39691.1| conserved hypothetical secreted protein [Mycobacterium marinum M] Length=106 Score = 41.2 bits (95), Expect = 0.055, Method: Compositional matrix adjust. Identities = 27/81 (34%), Positives = 39/81 (49%), Gaps = 2/81 (2%) Query 28 AAVPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADF 87 A HA A A+L N G NFA+ AA+ GH +C + GR + + DV A Sbjct 22 ATATAHADAVDDAFL-NAVRSHGINFASPQAAIMAGHQVCNALDSGRQKSDVAGDVAAS- 79 Query 88 DTRDQYQASYLLSQAVNELCP 108 + D Y+A Y + ++ CP Sbjct 80 SSLDGYRAGYFVGVSIAAYCP 100 >gi|118618122|ref|YP_906454.1| hypothetical protein MUL_2657 [Mycobacterium ulcerans Agy99] gi|118570232|gb|ABL04983.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=167 Score = 40.8 bits (94), Expect = 0.072, Method: Compositional matrix adjust. Identities = 27/77 (36%), Positives = 39/77 (51%), Gaps = 4/77 (5%) Query 34 ARADVV--AYLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDTRD 91 A AD V A+L N G NFA+ AA+ GH +C + GR + + DV A + D Sbjct 87 AHADAVDDAFL-NAVRSHGINFASPQAAIMAGHQVCNALDSGRQKSDVAGDVAAS-SSLD 144 Query 92 QYQASYLLSQAVNELCP 108 Y+A Y + ++ CP Sbjct 145 GYRAGYFVGVSIAAYCP 161 >gi|342861513|ref|ZP_08718160.1| hypothetical protein MCOL_21611 [Mycobacterium colombiense CECT 3035] gi|342131002|gb|EGT84291.1| hypothetical protein MCOL_21611 [Mycobacterium colombiense CECT 3035] Length=120 Score = 40.4 bits (93), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/59 (33%), Positives = 32/59 (55%), Gaps = 1/59 (1%) Query 50 GYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDTRDQYQASYLLSQAVNELCP 108 G N+ +ADAA++ GH +C ++ G+ Q+ V + T D Y A Y + ++ CP Sbjct 52 GINYESADAAVNSGHTVCHELDMGQTPEQVANSVLSS-STLDSYHAGYFVGVSIKAYCP 109 >gi|118466072|ref|YP_883411.1| hypothetical protein MAV_4271 [Mycobacterium avium 104] gi|254776706|ref|ZP_05218222.1| hypothetical protein MaviaA2_18846 [Mycobacterium avium subsp. avium ATCC 25291] gi|118167359|gb|ABK68256.1| conserved hypothetical protein [Mycobacterium avium 104] Length=117 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/79 (28%), Positives = 41/79 (52%), Gaps = 2/79 (2%) Query 30 VPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDT 89 P +A + A+L + + G N+ + DAA++ GH +C ++ G+ Q+ +V + T Sbjct 32 TPAYATSADDAFLAALKAK-GINYESPDAAVNSGHTVCHELDMGQTPEQVANNVLSS-ST 89 Query 90 RDQYQASYLLSQAVNELCP 108 D Y A Y + ++ CP Sbjct 90 LDSYHAGYFVGVSIKAYCP 108 >gi|296168904|ref|ZP_06850573.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896373|gb|EFG76026.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=153 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 29/97 (30%), Positives = 45/97 (47%), Gaps = 2/97 (2%) Query 12 LAAGVFVGALLCGVVTAAVPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVS 71 LA GV A L GV+ A A A+L +T + G N+ + + A+ GH +C ++ Sbjct 53 LAVGVVPAAGLLGVLGTTPAARATATDDAFLAALTAK-GINYESPETAIRSGHLVCAQLD 111 Query 72 RGRPYAQIIADVKADFDTRDQYQASYLLSQAVNELCP 108 G Q+ DV + D Y A Y + ++ CP Sbjct 112 SGIAPQQVANDVMTN-SHLDGYHAGYFVGVSIRAYCP 147 >gi|145222236|ref|YP_001132914.1| hypothetical protein Mflv_1644 [Mycobacterium gilvum PYR-GCK] gi|315442675|ref|YP_004075554.1| hypothetical protein Mspyr1_10300 [Mycobacterium sp. Spyr1] gi|145214722|gb|ABP44126.1| protein of unknown function DUF732 [Mycobacterium gilvum PYR-GCK] gi|315260978|gb|ADT97719.1| Protein of unknown function (DUF732) [Mycobacterium sp. Spyr1] Length=72 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 16/53 (31%), Positives = 25/53 (48%), Gaps = 1/53 (1%) Query 63 GHGLCEKVSRGRPYAQIIADVKADFDTRDQYQASYLLSQAVNELCPALIWQLR 115 GH +C+ G + Q +AD+ + D YQA Y + A CP W++ Sbjct 21 GHAVCQDWDNGASFEQEVADLTSVTSWSD-YQAGYFIGAATGAFCPEYEWKVS 72 >gi|120406051|ref|YP_955880.1| hypothetical protein Mvan_5103 [Mycobacterium vanbaalenii PYR-1] gi|119958869|gb|ABM15874.1| protein of unknown function DUF732 [Mycobacterium vanbaalenii PYR-1] Length=106 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 22/86 (26%), Positives = 36/86 (42%), Gaps = 3/86 (3%) Query 32 PHARADVVAYLVNVTVRPGYNFAN--ADAALSYGHGLCEKVSRGRPYAQIIADVKADFDT 89 P A AD + V G + + + G+ +C+ G + Q +AD+ + D Sbjct 22 PAALADPEGDFLTVIGNGGITWPSDKTQQVIETGYAVCQDWDNGASFEQEVADLTSVTDW 81 Query 90 RDQYQASYLLSQAVNELCPALIWQLR 115 D YQA Y + A CP W++ Sbjct 82 SD-YQAGYFIGAATGAFCPQYEWKVS 106 >gi|339755806|gb|AEJ95809.1| gp40 [Mycobacterium phage Adephagia] Length=100 Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust. Identities = 27/96 (29%), Positives = 45/96 (47%), Gaps = 6/96 (6%) Query 16 VFVGALLCGVVTAAVPPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRP 75 + V A + P A A YL ++V G + + AL+ G+ +C+++ G+P Sbjct 4 ILVAATIGAASVVLAPGAAHAGEAGYLARISVDYGLDILDEREALALGYAVCDELRTGKP 63 Query 76 YAQIIAD---VKADFDTRDQYQASYLLSQAVNELCP 108 +++AD +K TRD A + A ELCP Sbjct 64 R-EVVADRMFLKVLDMTRD--HADGIAYSAQRELCP 96 >gi|296164252|ref|ZP_06846842.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900391|gb|EFG79807.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=105 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/61 (33%), Positives = 30/61 (50%), Gaps = 1/61 (1%) Query 48 RPGYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDTRDQYQASYLLSQAVNELC 107 + G FAN DAA++ GH +C + + A ++ + D D + A Y AVN C Sbjct 39 KHGIVFANRDAAIATGHRVCTGLDADQTPANLVLSLVKDTDLS-AHVAGYFFGAAVNSYC 97 Query 108 P 108 P Sbjct 98 P 98 >gi|118462859|ref|YP_883960.1| hypothetical protein MAV_4836 [Mycobacterium avium 104] gi|118164146|gb|ABK65043.1| conserved hypothetical protein [Mycobacterium avium 104] Length=112 Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/107 (32%), Positives = 50/107 (47%), Gaps = 9/107 (8%) Query 12 LAAGVFVGALLCGVVTAAV--PPHARADVVAYLVNVTVRPGYNFANADAAL-SYGHGLCE 68 LA G+ ALL G + AAV A+AD +L ++ + DAAL G +C+ Sbjct 6 LAGGLIGSALLGGPLLAAVVWAGPAQADAAGFLNDMHRDGIHAVTGGDAALLQAGLNICQ 65 Query 69 KVSRGRPYAQIIADVKADFDTRD------QYQASYLLSQAVNELCPA 109 ++S G P AQ+ D R QA L+ A+ +LCP+ Sbjct 66 QISWGAPPAQLEGLALQRSDDRQGPGGLTPQQADDLVGYAMRDLCPS 112 >gi|296164250|ref|ZP_06846841.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900406|gb|EFG79821.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=96 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/61 (33%), Positives = 29/61 (48%), Gaps = 1/61 (1%) Query 48 RPGYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDTRDQYQASYLLSQAVNELC 107 + G F N DAA++ GH +C + + A +I + D D + A Y AVN C Sbjct 30 KHGIVFTNRDAAIATGHRVCTGLDADQTPANLILSLVKDTDLS-AHVAGYFFGAAVNSYC 88 Query 108 P 108 P Sbjct 89 P 89 >gi|339782277|gb|AEK08001.1| gp42 [Mycobacterium phage Anaya] Length=92 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/78 (29%), Positives = 33/78 (43%), Gaps = 0/78 (0%) Query 31 PPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDTR 90 P A A YL + V + N AL G+ +C K+ RG P + + + + Sbjct 11 PGAAHASEAGYLARIGVDYDFPVVNESEALRAGYEICGKLRRGIPREHVAEALFWNMEEL 70 Query 91 DQYQASYLLSQAVNELCP 108 + QA + A ELCP Sbjct 71 TREQADGIPYAAQRELCP 88 >gi|108801494|ref|YP_641691.1| hypothetical protein Mmcs_4531 [Mycobacterium sp. MCS] gi|119870647|ref|YP_940599.1| hypothetical protein Mkms_4618 [Mycobacterium sp. KMS] gi|126437479|ref|YP_001073170.1| hypothetical protein Mjls_4914 [Mycobacterium sp. JLS] gi|108771913|gb|ABG10635.1| protein of unknown function DUF732 [Mycobacterium sp. MCS] gi|119696736|gb|ABL93809.1| protein of unknown function DUF732 [Mycobacterium sp. KMS] gi|126237279|gb|ABO00680.1| protein of unknown function DUF732 [Mycobacterium sp. JLS] Length=106 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/64 (29%), Positives = 30/64 (47%), Gaps = 1/64 (1%) Query 51 YNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDTRDQYQASYLLSQAVNELCPAL 110 + A+ A + GH +C S G +A +AD+ + D D YQA + A CP Sbjct 43 WEAADTPAVIDTGHAVCSDWSNGATFADEVADLLSVTDWTD-YQAGVFIGAATGAFCPQF 101 Query 111 IWQL 114 +++ Sbjct 102 EYKI 105 >gi|254820154|ref|ZP_05225155.1| hypothetical protein MintA_09516 [Mycobacterium intracellulare ATCC 13950] Length=112 Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust. Identities = 31/105 (30%), Positives = 51/105 (49%), Gaps = 10/105 (9%) Query 12 LAAGVFVGALLCGVVTAAVPPHARADVVAYLVNVTVRPGYNFANADAAL-SYGHGLCEKV 70 +A+ +F LL G+V A+ A+AD ++L +V + DAAL G +C+++ Sbjct 11 IASALFGAPLLAGLVWAS---PAQADAASFLNDVHKDGIHAVTGGDAALLQAGLNICQQI 67 Query 71 SRGRPYAQIIADVKADFDTR------DQYQASYLLSQAVNELCPA 109 S G P AQ+ D R QA ++ A+ +LCP+ Sbjct 68 SWGAPPAQLEGLALQRSDERQGAGGLSPQQAGDIVVFAMRDLCPS 112 >gi|148251174|gb|ABQ53573.1| porin [Neisseria meningitidis] Length=383 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 17/75 (22%) Query 51 YNFANADAALSYGHG--LCEKVSRGR--PYAQIIADVKADFDTRDQYQASYLLSQAVNEL 106 Y F NA +SY HG E+ +G Y QIIA V DF R S +LS A Sbjct 307 YRFGNAVPRISYAHGFDFIERGKKGENTSYDQIIAGVDYDFSKR----TSAILSGA---- 358 Query 107 CPALIWQLRNSAVDN 121 W RN+ + N Sbjct 359 -----WLKRNTGIGN 368 >gi|118619212|ref|YP_907544.1| hypothetical protein MUL_4013 [Mycobacterium ulcerans Agy99] gi|183984121|ref|YP_001852412.1| hypothetical protein MMAR_4150 [Mycobacterium marinum M] gi|118571322|gb|ABL06073.1| conserved hypothetical secreted rotein [Mycobacterium ulcerans Agy99] gi|183177447|gb|ACC42557.1| conserved hypothetical secreted rotein [Mycobacterium marinum M] Length=110 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 18/65 (28%), Positives = 33/65 (51%), Gaps = 1/65 (1%) Query 50 GYNFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDTRDQYQASYLLSQAVNELCPA 109 G F++ AA GH +C++++ G+ I ++ + D + QA+Y + A + CP Sbjct 46 GVTFSSPQAADREGHQVCQELASGKTGTDIAEEILSQTDLTSK-QAAYFVVYATKDYCPQ 104 Query 110 LIWQL 114 QL Sbjct 105 YASQL 109 >gi|304360892|ref|YP_003857012.1| gp40 [Mycobacterium phage CrimD] gi|302858641|gb|ADL71386.1| gp40 [Mycobacterium phage CrimD] Length=92 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 25/81 (31%), Positives = 41/81 (51%), Gaps = 6/81 (7%) Query 31 PPHARADVVAYLVNVTVRPGYNFANADAALSYGHGLCEKVSRGRPYAQIIAD---VKADF 87 P A A YL ++V G + + AL+ G+ +C+++ G+P ++IAD +K Sbjct 11 PGAAHAGDAGYLARISVDYGLDILDEREALALGYAVCDELRAGKPR-EVIADRLFLKVLD 69 Query 88 DTRDQYQASYLLSQAVNELCP 108 TR+ A + A ELCP Sbjct 70 MTRE--HADGIAFSAQRELCP 88 >gi|298242679|ref|ZP_06966486.1| hypothetical protein Krac_11162 [Ktedonobacter racemifer DSM 44963] gi|297555733|gb|EFH89597.1| hypothetical protein Krac_11162 [Ktedonobacter racemifer DSM 44963] Length=584 Score = 34.3 bits (77), Expect = 6.8, Method: Composition-based stats. Identities = 16/37 (44%), Positives = 25/37 (68%), Gaps = 0/37 (0%) Query 6 LMPQQTLAAGVFVGALLCGVVTAAVPPHARADVVAYL 42 ++PQ+T VFVGALL G++ A +P AD+ +Y+ Sbjct 130 ILPQRTRLRVVFVGALLLGLIWAFMPIVTSADLFSYI 166 >gi|109392349|ref|YP_655579.1| gp62 [Mycobacterium phage Halo] gi|189043147|ref|YP_001936088.1| hypothetical protein BPs1_60 [Mycobacterium phage BPs] gi|239590067|ref|YP_002941916.1| gp58 [Mycobacterium phage Angel] gi|91980599|gb|ABE67319.1| hypothetical protein Halo61 [Mycobacterium phage Halo] gi|171909262|gb|ACB58219.1| hypothetical protein BPs1_60 [Mycobacterium phage BPs] gi|238890599|gb|ACR77588.1| gp58 [Mycobacterium phage Angel] gi|255927904|gb|ACU41524.1| gp60 [Mycobacterium phage Hope] Length=107 Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust. Identities = 24/71 (34%), Positives = 33/71 (47%), Gaps = 2/71 (2%) Query 40 AYLVNVTVRPGY--NFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDTRDQYQASY 97 YL + V GY N + AAL G LC+++ G P ++ A V Q QA Sbjct 28 GYLARLGVDYGYQLNAESIPAALEAGRVLCDEMRAGTPRDKLTASVFQAIPGVTQDQAGG 87 Query 98 LLSQAVNELCP 108 ++ A ELCP Sbjct 88 MVFAAHTELCP 98 >gi|343171724|gb|AEL98529.1| gp57 [Mycobacterium phage Liefie] Length=107 Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust. Identities = 24/70 (35%), Positives = 33/70 (48%), Gaps = 2/70 (2%) Query 41 YLVNVTVRPGY--NFANADAALSYGHGLCEKVSRGRPYAQIIADVKADFDTRDQYQASYL 98 YL + V GY N + AAL G LC+++ G P ++ A V Q QA + Sbjct 29 YLARLGVDYGYQLNAESIPAALEAGRVLCDEMRAGTPRDKLTASVFQAIPGVTQDQAGGM 88 Query 99 LSQAVNELCP 108 + A ELCP Sbjct 89 VFAAHTELCP 98 >gi|344173705|emb|CCA88877.1| endodeoxyribonuclease, subunit C of RuvABC Holliday junction resolvasome [Ralstonia syzygii R24] Length=181 Score = 33.9 bits (76), Expect = 8.8, Method: Compositional matrix adjust. Identities = 26/79 (33%), Positives = 38/79 (49%), Gaps = 21/79 (26%) Query 8 PQQTLAAGVFVGALLCGVVTAAVP--------------PHARA------DVVAYLVNVTV 47 PQ TL G GA +CG+V+ A+P + RA D+V L+N+ Sbjct 75 PQSTLLLGQARGAAICGLVSGALPVFEYTALQLKLAVVGYGRANKEQVQDMVVRLLNLEG 134 Query 48 RPGYNFANA-DAALSYGHG 65 RPG + A+A A+ + HG Sbjct 135 RPGSDAADALGVAICHAHG 153 Lambda K H 0.321 0.134 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130354689300 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40