BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           21,062,489 sequences; 7,218,481,314 total letters



Query= Rv1979c Rv1979c Possible conserved permease 2221719:2223164 reverse
MW:51084

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|289758091|ref|ZP_06517469.1|  permease [Mycobacterium tubercul...   943    0.0   
gi|15609116|ref|NP_216495.1|  permease [Mycobacterium tuberculosi...   943    0.0   
gi|15841455|ref|NP_336492.1|  amino acid permease [Mycobacterium ...   943    0.0   
gi|253798973|ref|YP_003031974.1|  permease [Mycobacterium tubercu...   941    0.0   
gi|31793158|ref|NP_855651.1|  permease [Mycobacterium bovis AF212...   939    0.0   
gi|340626992|ref|YP_004745444.1|  putative permease [Mycobacteriu...   938    0.0   
gi|289574651|ref|ZP_06454878.1|  permease [Mycobacterium tubercul...   937    0.0   
gi|308231996|ref|ZP_07414548.2|  permease [Mycobacterium tubercul...   903    0.0   
gi|15828069|ref|NP_302332.1|  permease [Mycobacterium leprae TN] ...   704    0.0   
gi|408779234|ref|ZP_11191007.1|  permease [Mycobacterium kansasii...   621    1e-175
gi|383307791|ref|YP_005360602.1|  permease [Mycobacterium tubercu...   367    3e-99 
gi|336055122|ref|YP_004563409.1|  amino acid permease [Lactobacil...   315    1e-83 
gi|385818387|ref|YP_005854777.1|  amino acid permease [Lactobacil...   311    3e-82 
gi|319891363|ref|YP_004148238.1|  amino acid permease [Staphyloco...   310    4e-82 
gi|315039204|ref|YP_004032772.1|  amino acid permease [Lactobacil...   310    4e-82 
gi|406658791|ref|ZP_11066931.1|  APC family amino acid transporte...   306    6e-81 
gi|304438962|ref|ZP_07398885.1|  arginine permease [Peptoniphilus...   303    8e-80 
gi|395244088|ref|ZP_10421064.1|  Amino acid transporter [Lactobac...   303    8e-80 
gi|310658054|ref|YP_003935775.1|  arginine permease [Clostridium ...   302    9e-80 
gi|383845658|gb|EID83058.1|  amino acid permease [Streptococcus i...   301    2e-79 
gi|392428847|ref|YP_006469858.1|  arginine permease [Streptococcu...   301    2e-79 
gi|403515969|ref|YP_006656789.1|  amino acid permease [Lactobacil...   299    1e-78 
gi|169823908|ref|YP_001691519.1|  putative amino acid transporter...   298    2e-78 
gi|58338146|ref|YP_194731.1|  amino acid permease [Lactobacillus ...   297    4e-78 
gi|161508170|ref|YP_001578141.1|  amino acid permease [Lactobacil...   296    8e-78 
gi|227893927|ref|ZP_04011732.1|  APC family amino acid-polyamine-...   295    1e-77 
gi|148543318|ref|YP_001270688.1|  amino acid permease-associated ...   295    2e-77 
gi|309813124|ref|ZP_07706848.1|  amino acid permease [Dermacoccus...   291    2e-76 
gi|295693807|ref|YP_003602417.1|  amino acid permease [Lactobacil...   291    3e-76 
gi|295425933|ref|ZP_06818610.1|  amino acid permease [Lactobacill...   290    5e-76 
gi|229826233|ref|ZP_04452302.1|  hypothetical protein GCWU000182_...   290    6e-76 
gi|238853517|ref|ZP_04643893.1|  amino acid transporter [Lactobac...   288    1e-75 
gi|300362846|ref|ZP_07059016.1|  APC family amino acid-polyamine-...   288    2e-75 
gi|116630341|ref|YP_815611.1|  amino acid transporter [Lactobacil...   288    2e-75 
gi|282852303|ref|ZP_06261648.1|  amino acid permease [Lactobacill...   288    2e-75 
gi|343520981|ref|ZP_08757949.1|  amino acid permease [Parvimonas ...   287    3e-75 
gi|268320179|ref|YP_003293835.1|  hypothetical protein FI9785_171...   286    6e-75 
gi|42519815|ref|NP_965745.1|  hypothetical protein LJ0510 [Lactob...   286    8e-75 
gi|256843919|ref|ZP_05549406.1|  amino acid permease [Lactobacill...   286    9e-75 
gi|227878463|ref|ZP_03996403.1|  APC family amino acid-polyamine-...   285    2e-74 
gi|262046187|ref|ZP_06019150.1|  amino acid permease [Lactobacill...   284    3e-74 
gi|227889248|ref|ZP_04007053.1|  APC family amino acid-polyamine-...   284    3e-74 
gi|385826627|ref|YP_005862969.1|  hypothetical protein [Lactobaci...   284    4e-74 
gi|291458472|ref|ZP_06597862.1|  amino acid permease [Oribacteriu...   284    4e-74 
gi|375091548|ref|ZP_09737837.1|  hypothetical protein HMPREF9709_...   281    2e-73 
gi|366086773|ref|ZP_09453258.1|  amino acid permease [Lactobacill...   281    2e-73 
gi|373106898|ref|ZP_09521198.1|  hypothetical protein HMPREF9623_...   281    3e-73 
gi|377556597|ref|ZP_09786297.1|  Amino acid transport protein [La...   278    1e-72 
gi|238855438|ref|ZP_04645748.1|  amino acid transporter [Lactobac...   278    2e-72 
gi|256851625|ref|ZP_05557013.1|  amino acid permease [Lactobacill...   278    2e-72 


>gi|289758091|ref|ZP_06517469.1| permease [Mycobacterium tuberculosis T85]
 gi|289713655|gb|EFD77667.1| permease [Mycobacterium tuberculosis T85]
Length=481

 Score =  943 bits (2437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 479/481 (99%), Positives = 481/481 (100%), Gaps = 0/481 (0%)

Query  1    VVGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV  60
            +VGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV
Sbjct  1    MVGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV  60

Query  61   VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV  120
            VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV
Sbjct  61   VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV  120

Query  121  AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG  180
            AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG
Sbjct  121  AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG  180

Query  181  GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN  240
            GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN
Sbjct  181  GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN  240

Query  241  AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATF  300
            AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATF
Sbjct  241  AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATF  300

Query  301  RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA  360
            RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA
Sbjct  301  RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA  360

Query  361  LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV  420
            LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV
Sbjct  361  LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV  420

Query  421  AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST  480
            AIVVS+GLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST
Sbjct  421  AIVVSIGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST  480

Query  481  R  481
            R
Sbjct  481  R  481


>gi|15609116|ref|NP_216495.1| permease [Mycobacterium tuberculosis H37Rv]
 gi|6226927|sp|Q10875.2|Y1979_MYCTU RecName: Full=Uncharacterized transporter Rv1979c/MT2031
 gi|3256025|emb|CAA17852.1| POSSIBLE CONSERVED PERMEASE [Mycobacterium tuberculosis H37Rv]
Length=481

 Score =  943 bits (2437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 479/481 (99%), Positives = 481/481 (100%), Gaps = 0/481 (0%)

Query  1    VVGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV  60
            +VGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV
Sbjct  1    MVGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV  60

Query  61   VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV  120
            VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV
Sbjct  61   VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV  120

Query  121  AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG  180
            AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG
Sbjct  121  AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG  180

Query  181  GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN  240
            GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN
Sbjct  181  GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN  240

Query  241  AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATF  300
            AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATF
Sbjct  241  AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATF  300

Query  301  RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA  360
            RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA
Sbjct  301  RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA  360

Query  361  LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV  420
            LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV
Sbjct  361  LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV  420

Query  421  AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST  480
            AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITF+VVPAMAYLHYYRIIRRVGDRPST
Sbjct  421  AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFVVVPAMAYLHYYRIIRRVGDRPST  480

Query  481  R  481
            R
Sbjct  481  R  481


>gi|15841455|ref|NP_336492.1| amino acid permease [Mycobacterium tuberculosis CDC1551]
 gi|148661788|ref|YP_001283311.1| amino acid permease [Mycobacterium tuberculosis H37Ra]
 gi|148823193|ref|YP_001287947.1| permease [Mycobacterium tuberculosis F11]
 29 more sequence titles
 Length=481

 Score =  943 bits (2437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 480/481 (99%), Positives = 481/481 (100%), Gaps = 0/481 (0%)

Query  1    VVGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV  60
            +VGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV
Sbjct  1    MVGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV  60

Query  61   VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV  120
            VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV
Sbjct  61   VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV  120

Query  121  AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG  180
            AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG
Sbjct  121  AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG  180

Query  181  GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN  240
            GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN
Sbjct  181  GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN  240

Query  241  AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATF  300
            AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATF
Sbjct  241  AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATF  300

Query  301  RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA  360
            RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA
Sbjct  301  RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA  360

Query  361  LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV  420
            LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV
Sbjct  361  LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV  420

Query  421  AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST  480
            AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST
Sbjct  421  AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST  480

Query  481  R  481
            R
Sbjct  481  R  481


>gi|253798973|ref|YP_003031974.1| permease [Mycobacterium tuberculosis KZN 1435]
 gi|297634548|ref|ZP_06952328.1| permease [Mycobacterium tuberculosis KZN 4207]
 gi|297731536|ref|ZP_06960654.1| permease [Mycobacterium tuberculosis KZN R506]
 6 more sequence titles
 Length=481

 Score =  941 bits (2433),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 479/481 (99%), Positives = 481/481 (100%), Gaps = 0/481 (0%)

Query  1    VVGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV  60
            +VGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPG+VIGLAGPFAPMAYVLAGIFAGV
Sbjct  1    MVGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGDVIGLAGPFAPMAYVLAGIFAGV  60

Query  61   VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV  120
            VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV
Sbjct  61   VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV  120

Query  121  AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG  180
            AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG
Sbjct  121  AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG  180

Query  181  GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN  240
            GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN
Sbjct  181  GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN  240

Query  241  AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATF  300
            AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATF
Sbjct  241  AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATF  300

Query  301  RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA  360
            RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA
Sbjct  301  RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA  360

Query  361  LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV  420
            LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV
Sbjct  361  LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV  420

Query  421  AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST  480
            AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST
Sbjct  421  AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST  480

Query  481  R  481
            R
Sbjct  481  R  481


>gi|31793158|ref|NP_855651.1| permease [Mycobacterium bovis AF2122/97]
 gi|224990356|ref|YP_002645043.1| permease [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289443468|ref|ZP_06433212.1| permease [Mycobacterium tuberculosis T46]
 15 more sequence titles
 Length=481

 Score =  939 bits (2428),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 479/481 (99%), Positives = 480/481 (99%), Gaps = 0/481 (0%)

Query  1    VVGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV  60
            +VGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV
Sbjct  1    MVGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV  60

Query  61   VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV  120
            VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV
Sbjct  61   VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV  120

Query  121  AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG  180
            AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG
Sbjct  121  AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG  180

Query  181  GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN  240
            GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN
Sbjct  181  GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN  240

Query  241  AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATF  300
            AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAAS DTVKLAAAIGNATF
Sbjct  241  AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASGDTVKLAAAIGNATF  300

Query  301  RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA  360
            RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA
Sbjct  301  RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA  360

Query  361  LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV  420
            LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV
Sbjct  361  LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV  420

Query  421  AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST  480
            AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST
Sbjct  421  AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST  480

Query  481  R  481
            R
Sbjct  481  R  481


>gi|340626992|ref|YP_004745444.1| putative permease [Mycobacterium canettii CIPT 140010059]
 gi|340005182|emb|CCC44331.1| putative conserved permease [Mycobacterium canettii CIPT 140010059]
Length=481

 Score =  938 bits (2424),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 478/481 (99%), Positives = 479/481 (99%), Gaps = 0/481 (0%)

Query  1    VVGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV  60
            +VGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV
Sbjct  1    MVGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV  60

Query  61   VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV  120
            VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV
Sbjct  61   VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV  120

Query  121  AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG  180
            AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG
Sbjct  121  AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG  180

Query  181  GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN  240
            GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN
Sbjct  181  GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN  240

Query  241  AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATF  300
            AAEEMDAPDRNLPRAIPIAIFSVGAIYLL LTVAMLLGSNKIAAS DTVKLAAAIGNATF
Sbjct  241  AAEEMDAPDRNLPRAIPIAIFSVGAIYLLALTVAMLLGSNKIAASGDTVKLAAAIGNATF  300

Query  301  RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA  360
            RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA
Sbjct  301  RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA  360

Query  361  LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV  420
            LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV
Sbjct  361  LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV  420

Query  421  AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST  480
            AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST
Sbjct  421  AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST  480

Query  481  R  481
            R
Sbjct  481  R  481


>gi|289574651|ref|ZP_06454878.1| permease [Mycobacterium tuberculosis K85]
 gi|289539082|gb|EFD43660.1| permease [Mycobacterium tuberculosis K85]
Length=481

 Score =  937 bits (2423),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 478/481 (99%), Positives = 479/481 (99%), Gaps = 0/481 (0%)

Query  1    VVGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV  60
            +VGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV
Sbjct  1    MVGPRTRGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGV  60

Query  61   VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV  120
            VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASI WGVLASFFVSTLLRV
Sbjct  61   VAIVFATAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASITWGVLASFFVSTLLRV  120

Query  121  AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG  180
            AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG
Sbjct  121  AFPDKAWADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVG  180

Query  181  GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN  240
            GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN
Sbjct  181  GLWIITTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIAN  240

Query  241  AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATF  300
            AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAAS DTVKLAAAIGNATF
Sbjct  241  AAEEMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASGDTVKLAAAIGNATF  300

Query  301  RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA  360
            RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA
Sbjct  301  RTIIVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLA  360

Query  361  LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV  420
            LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV
Sbjct  361  LAFPLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLV  420

Query  421  AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST  480
            AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST
Sbjct  421  AIVVSVGLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST  480

Query  481  R  481
            R
Sbjct  481  R  481


>gi|308231996|ref|ZP_07414548.2| permease [Mycobacterium tuberculosis SUMu001]
 gi|308369579|ref|ZP_07418329.2| permease [Mycobacterium tuberculosis SUMu002]
 gi|308370880|ref|ZP_07423064.2| permease [Mycobacterium tuberculosis SUMu003]
 22 more sequence titles
 Length=461

 Score =  903 bits (2333),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 461/461 (100%), Positives = 461/461 (100%), Gaps = 0/461 (0%)

Query  21   MLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARYVRTNGASYA  80
            MLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARYVRTNGASYA
Sbjct  1    MLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARYVRTNGASYA  60

Query  81   YTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAEQLFSVKTLT  140
            YTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAEQLFSVKTLT
Sbjct  61   YTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAEQLFSVKTLT  120

Query  141  FLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVNNYATAWSAY  200
            FLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVNNYATAWSAY
Sbjct  121  FLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVNNYATAWSAY  180

Query  201  SATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRNLPRAIPIAI  260
            SATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRNLPRAIPIAI
Sbjct  181  SATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRNLPRAIPIAI  240

Query  261  FSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALISMFGINVAAS  320
            FSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALISMFGINVAAS
Sbjct  241  FSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALISMFGINVAAS  300

Query  321  FGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDNLHLTGLAVI  380
            FGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDNLHLTGLAVI
Sbjct  301  FGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDNLHLTGLAVI  360

Query  381  ARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLVAIVVSVGLAVSYDYRCIFLV  440
            ARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLVAIVVSVGLAVSYDYRCIFLV
Sbjct  361  ARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLVAIVVSVGLAVSYDYRCIFLV  420

Query  441  RGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPSTR  481
            RGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPSTR
Sbjct  421  RGGPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPSTR  461


>gi|15828069|ref|NP_302332.1| permease [Mycobacterium leprae TN]
 gi|221230546|ref|YP_002503962.1| permease [Mycobacterium leprae Br4923]
 gi|13093623|emb|CAC30929.1| unknown permease [Mycobacterium leprae]
 gi|219933653|emb|CAR72071.1| unknown permease [Mycobacterium leprae Br4923]
Length=572

 Score =  704 bits (1818),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 356/462 (78%), Positives = 399/462 (87%), Gaps = 0/462 (0%)

Query  8    GYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFAT  67
            G AI KLGF SVVMLGINSIIGAGIF+TPGEVI +AGPFAP+AY LAGIFA V+AIVFAT
Sbjct  106  GRAISKLGFWSVVMLGINSIIGAGIFMTPGEVIKIAGPFAPIAYTLAGIFAAVLAIVFAT  165

Query  68   AARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAW  127
            AA+YV+TNG+SYAYTTAAFG RIGIYVGVTHAITASIAWGVLAS FVSTLLRVAFP+K W
Sbjct  166  AAKYVKTNGSSYAYTTAAFGHRIGIYVGVTHAITASIAWGVLASSFVSTLLRVAFPEKIW  225

Query  128  ADAEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITT  187
            AD ++L SVKTLTFL FI VLLAIN+FGN  I+WANG S +GK FALS FI GGLW I T
Sbjct  226  ADNDELISVKTLTFLVFIAVLLAINIFGNLVIRWANGISALGKIFALSVFIAGGLWTIIT  285

Query  188  QHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDA  247
            QHVNNY T+ SAY  T YSLLGV EIGK T +SM LATIVALYAFTGFESIANAAEEM+ 
Sbjct  286  QHVNNYVTSRSAYQPTTYSLLGVTEIGKSTAASMTLATIVALYAFTGFESIANAAEEMNT  345

Query  248  PDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVG  307
            PDR LP+AIP+ I +VG IY+L L VAMLLGS+KI A++ TVKLAAA+GN TFRTIIVVG
Sbjct  346  PDRTLPKAIPLTILTVGVIYILALVVAMLLGSDKIVATNHTVKLAAAVGNNTFRTIIVVG  405

Query  308  ALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLAL  367
            AL+SMFGINVAASFGAPRLWTAL+D  +LPTRLS KN++ VP+V+F ITA L LAFPL+L
Sbjct  406  ALVSMFGINVAASFGAPRLWTALSDGRILPTRLSSKNRFGVPIVAFGITAFLTLAFPLSL  465

Query  368  RFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLVAIVVSVG  427
            RFD+L+LTGLAVIARF+QFIIVPIAL ALARS+      V+RN FTDKVLP+ A+VVS G
Sbjct  466  RFDSLNLTGLAVIARFIQFIIVPIALFALARSRTTNSVYVKRNVFTDKVLPITAVVVSAG  525

Query  428  LAVSYDYRCIFLVRGGPNYFSIALIVITFIVVPAMAYLHYYR  469
            L VS+DYR IFL RGGPNYFSI+LI ITFI +PA+AYLHYYR
Sbjct  526  LMVSFDYRSIFLTRGGPNYFSISLIAITFIGIPAVAYLHYYR  567


>gi|408779234|ref|ZP_11191007.1| permease [Mycobacterium kansasii ATCC 12478]
Length=456

 Score =  621 bits (1601),  Expect = 1e-175, Method: Compositional matrix adjust.
 Identities = 323/456 (71%), Positives = 383/456 (84%), Gaps = 3/456 (0%)

Query  21   MLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARYVRTNGASYA  80
            MLGINSIIGAGIFLTPG VI LAGP+AP+AY+LAG+FAG++A+VFA+AARYV+TNGASYA
Sbjct  1    MLGINSIIGAGIFLTPGTVIKLAGPWAPVAYILAGVFAGIMALVFASAARYVKTNGASYA  60

Query  81   YTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAEQLFSVKTLT  140
            YTTAAFG++IGIYVGVTHAI ASIAWGVLAS FVSTLL+VAFP+K WAD   L SVKTLT
Sbjct  61   YTTAAFGQKIGIYVGVTHAIVASIAWGVLASLFVSTLLKVAFPEKNWADDSGLLSVKTLT  120

Query  141  FLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVNNYATAWSA-  199
            FLGFI VLL IN+FGNRAIKWANGTST+GK  ALS FIVGGLW++ T H ++Y TA ++ 
Sbjct  121  FLGFIVVLLVINIFGNRAIKWANGTSTIGKVSALSVFIVGGLWLLVTHHPSHYGTASASG  180

Query  200  -YSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRNLPRAIPI  258
             Y   PY+L G  ++  G  S + LATI ALYAFTGFESIANAAEEM  P+R LP+AIP+
Sbjct  181  VYQPAPYALFGGIQLAHGAVSGLILATIAALYAFTGFESIANAAEEMYEPERTLPKAIPV  240

Query  259  AIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALISMFGINVA  318
            AI  VGA+Y+L + VAMLLGS+K+  SD TV+LAAAI +   RT +V+GALISMFGINVA
Sbjct  241  AILGVGAVYVLAVAVAMLLGSDKVFESDATVRLAAAIDDGPLRTTVVLGALISMFGINVA  300

Query  319  ASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDNLHLTGLA  378
            ASFGAPR+WTAL+D+ +LP RLS +N++ VPM++FAITASLALAFPLALRFD+++L GLA
Sbjct  301  ASFGAPRVWTALSDTRILPARLSTQNRFGVPMIAFAITASLALAFPLALRFDSVNLIGLA  360

Query  379  VIARFVQFIIVPIALIALARSQAVEHAAVRRNAFTDKVLPLVAIVVSVGLAVSYDYRCIF  438
            VIARF+QFIIVP+AL+ALAR  A  HA  +RN  TDKVLP+ A+ VSV LAVS+DYR IF
Sbjct  361  VIARFIQFIIVPVALVALARDTAGSHATAKRNPLTDKVLPIAAVTVSVALAVSFDYRTIF  420

Query  439  LV-RGGPNYFSIALIVITFIVVPAMAYLHYYRIIRR  473
               +GG NYFSIAL+VITF+VVPA+AYLHYYR   R
Sbjct  421  ATPQGGANYFSIALMVITFLVVPAIAYLHYYRTCDR  456


>gi|383307791|ref|YP_005360602.1| permease [Mycobacterium tuberculosis RGTB327]
 gi|380721744|gb|AFE16853.1| permease [Mycobacterium tuberculosis RGTB327]
Length=508

 Score =  367 bits (942),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 185/185 (100%), Positives = 185/185 (100%), Gaps = 0/185 (0%)

Query  21   MLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARYVRTNGASYA  80
            MLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARYVRTNGASYA
Sbjct  1    MLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARYVRTNGASYA  60

Query  81   YTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAEQLFSVKTLT  140
            YTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAEQLFSVKTLT
Sbjct  61   YTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAEQLFSVKTLT  120

Query  141  FLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVNNYATAWSAY  200
            FLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVNNYATAWSAY
Sbjct  121  FLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVNNYATAWSAY  180

Query  201  SATPY  205
            SATPY
Sbjct  181  SATPY  185


>gi|336055122|ref|YP_004563409.1| amino acid permease [Lactobacillus kefiranofaciens ZW3]
 gi|333958499|gb|AEG41307.1| Amino acid permease [Lactobacillus kefiranofaciens ZW3]
Length=464

 Score =  315 bits (807),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 175/456 (39%), Positives = 282/456 (62%), Gaps = 18/456 (3%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L IN+IIG+GIFLTPG V+  AG  A + Y++A IFA ++AI FA A++Y
Sbjct  7    DKLGFWSIVLLAINAIIGSGIFLTPGSVVQQAGSKALVVYLIAAIFASILAISFAAASKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            V  +GA+YAY+ AAFG+++G Y+GV    +AS+AWGV+A   + + + +        D  
Sbjct  67   VTKSGAAYAYSKAAFGKKVGFYMGVLRYFSASVAWGVMAVGVIKSTISIF-----GGDPN  121

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVN  191
            +  SV T+ FL  + ++  INLFG R +KW    +T+GK  AL   IV G+ ++ T   +
Sbjct  122  KTMSV-TIGFLVLMAIITIINLFGQRVLKWVMNLATIGKLAALVLIIVAGVVLLITTGAS  180

Query  192  NYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRN  251
            ++       +       G   +   T ++  +A + A YAFTGFES+A+ +E+M+ P++N
Sbjct  181  SHMAEVDQITQN-----GQKIVPTLTTTTFVMAIVSAFYAFTGFESVASGSEDMEDPEKN  235

Query  252  LPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALIS  311
            LPRAIP+AI  +  IY+  + VAM+L    +  +   V +AA   N   R II+VGAL+S
Sbjct  236  LPRAIPLAILVIALIYIGVVAVAMVLNPKALMTTKQVVAVAAIFNNEILRDIILVGALVS  295

Query  312  MFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDN  371
            MFGINVA+SF APR+  A+A  G +   L+++ + + P+ +F I+ +LA+  P+A  ++ 
Sbjct  296  MFGINVASSFNAPRILEAMAREGQMSKALTKRTKNNFPIRTFFISVALAILIPMAFEYNM  355

Query  372  LHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSVGLAV  430
            ++L  L+ + RF+ FI+VP+A+I   R +A E      +N  TD V P+++I+V V L +
Sbjct  356  VNLITLSAMVRFLGFIVVPLAVIQFYRGKASEDVLPADKNVVTDVVAPILSIIVVVFLLI  415

Query  431  SYDYRCIFLVRG------GPNYFSIALIVITFIVVP  460
             Y+++  F V        G N+++IA+++  F+++P
Sbjct  416  EYNWKAQFGVMNASGQVIGVNWYAIAMMIFGFVILP  451


>gi|385818387|ref|YP_005854777.1| amino acid permease [Lactobacillus amylovorus GRL1118]
 gi|327184325|gb|AEA32772.1| amino acid permease [Lactobacillus amylovorus GRL1118]
Length=463

 Score =  311 bits (796),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 177/459 (39%), Positives = 283/459 (62%), Gaps = 24/459 (5%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L IN+IIG+GIFLTPG V+  AG  A + Y +A IFA ++A+ FA A++Y
Sbjct  7    DKLGFWSIVLLAINAIIGSGIFLTPGSVVQQAGSKALIVYFIAAIFASILAVSFAAASKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV--AFPDKAWAD  129
            V  +GA+YAY+ AAFG ++G Y+GV    +AS+AWGV+A   + + + +    P+KA   
Sbjct  67   VTKSGAAYAYSKAAFGEKVGFYMGVLRYFSASVAWGVMAVGVIKSTISIFGGDPNKA---  123

Query  130  AEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGG-LWIITTQ  188
                 +V T+ FL  + ++  INLFG R +KW    +T+GK  AL   I+ G + +ITT 
Sbjct  124  ----LNV-TVGFLILMAIITIINLFGQRVLKWVMNLATIGKLAALVLIIIAGVILLITTG  178

Query  189  HVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAP  248
              +N +           +  G   +   T ++  +A + A YAFTGFES+A+ +++M  P
Sbjct  179  ASSNLS------EVDQINQNGQKIVPTLTTTTFVMAIVSAFYAFTGFESVASGSDDMKDP  232

Query  249  DRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGA  308
            ++NLPRAIP+AI  +  +Y+  + VAM+L    +  +   V +AA   N   R +I+VGA
Sbjct  233  EKNLPRAIPLAILIIAVVYIGVVAVAMVLNPKALMTTKQVVAVAAIFKNEILRDVILVGA  292

Query  309  LISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALR  368
            L+SMFGINVA+SF APR+  A+A  G +   L+++ + + P+ +F I+  LA+  P+A  
Sbjct  293  LVSMFGINVASSFNAPRILEAMAREGQMSKALTKRTKNNFPIRTFFISVGLAILIPMAFE  352

Query  369  FDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSVG  427
            ++ ++L  L+ + RF+ FI+VPIA+I   R +  E      +NA+TD V+P+++IV+ V 
Sbjct  353  YNMVNLITLSAMVRFLGFIVVPIAVIQFYRGKTKEEVLKADKNAWTDVVVPILSIVIVVF  412

Query  428  LAVSYDYRCIFLVRG------GPNYFSIALIVITFIVVP  460
            L V Y+++  F V        G N+++IA++V  F+++P
Sbjct  413  LLVEYNWKAQFGVANAAGQIVGVNWYAIAMMVFGFVILP  451


>gi|319891363|ref|YP_004148238.1| amino acid permease [Staphylococcus pseudintermedius HKU10-03]
 gi|386320293|ref|YP_006016456.1| amino acid permease [Staphylococcus pseudintermedius ED99]
 gi|317161059|gb|ADV04602.1| putative amino acid permease [Staphylococcus pseudintermedius 
HKU10-03]
 gi|323465464|gb|ADX77617.1| amino acid permease [Staphylococcus pseudintermedius ED99]
Length=461

 Score =  310 bits (795),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 179/460 (39%), Positives = 283/460 (62%), Gaps = 23/460 (5%)

Query  11   IHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAAR  70
            + KLGF S+V+L INSIIG+GIFLTPG VI ++G + P+ YV+A IFA ++A+ FA+A++
Sbjct  1    MKKLGFWSIVLLSINSIIGSGIFLTPGSVIRISGIYTPLIYVMAAIFASILALTFASASK  60

Query  71   YVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADA  130
            YV  +GA+Y+YT  A G  IG YVG+T  I  SIAWGV+A+  V T++ +   D    DA
Sbjct  61   YVNKSGAAYSYTMVALGPHIGFYVGITRFIAGSIAWGVMATAVVKTVITIFGGDHT--DA  118

Query  131  EQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHV  190
              +    TL F+  +G+LL IN+ G   + W +  ST+GK  AL   I+ GL+++    +
Sbjct  119  RLI----TLGFILLMGILLLINVLGKHLLVWVSNLSTIGKIAALLTVIISGLYLV----I  170

Query  191  NNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDR  250
                T +S  S    +L+  ++I    F    +A I A YAFTGFESIA  A++M +P++
Sbjct  171  QTGDTQFSRIS----TLVDTSQIDSQAF---VMAIIAAFYAFTGFESIATGAQDMKSPEK  223

Query  251  NLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALI  310
            NLPRAIP+AIF +  IY+  +++ M +    +  + + V L A         II+ G+LI
Sbjct  224  NLPRAIPLAIFMIAFIYIGVISITMTINPVALIQTKEVVSLVAVFDTPVIHRIILYGSLI  283

Query  311  SMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFD  370
            SMFGINVAASF  PR+  A+A  G +P    ++  YD P+ +F +T  +A+A PLA +++
Sbjct  284  SMFGINVAASFSTPRIIEAIAHEGQIPKWFKKRTVYDFPLPAFMLTFLIAIAIPLAFQYN  343

Query  371  NLHLTGLAVIARFVQFIIVPIALIAL--ARSQAVEHAAVRRNAFTDKVLPLVAIVVSVGL  428
               +  L+ I+RF+Q++IVPI +I     ++ A     +R+N FTD +LP+ + V+++ L
Sbjct  344  LTSIILLSSISRFIQYLIVPICVILFYYGKTSAPTLNHIRKNFFTDVLLPIFSFVLTLVL  403

Query  429  AVSYDYRCIFLVRGGP----NYFSIALIVITFIVVPAMAY  464
             + ++++  FL+        NY  +A +V+++++ P + Y
Sbjct  404  LIKFNWKGQFLITNDAVTSFNYLGVASLVLSYVIFPIILY  443


>gi|315039204|ref|YP_004032772.1| amino acid permease [Lactobacillus amylovorus GRL 1112]
 gi|325957678|ref|YP_004293090.1| amino acid permease [Lactobacillus acidophilus 30SC]
 gi|312277337|gb|ADQ59977.1| amino acid permease [Lactobacillus amylovorus GRL 1112]
 gi|325334243|gb|ADZ08151.1| amino acid permease [Lactobacillus acidophilus 30SC]
Length=463

 Score =  310 bits (795),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 177/459 (39%), Positives = 283/459 (62%), Gaps = 24/459 (5%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L IN+IIG+GIFLTPG V+  AG  A + Y +A IFA ++A+ FA A++Y
Sbjct  7    DKLGFWSIVLLAINAIIGSGIFLTPGSVVQQAGSKALIVYFIAAIFASILAVSFAAASKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV--AFPDKAWAD  129
            V  +GA+YAY+ AAFG ++G Y+GV    +AS+AWGV+A   + + + +    P+KA   
Sbjct  67   VTKSGAAYAYSKAAFGEKVGFYMGVLRYFSASVAWGVMAVGVIKSTISIFGGDPNKA---  123

Query  130  AEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGG-LWIITTQ  188
                 +V T+ FL  + ++  INLFG R +KW    +T+GK  AL   I+ G + +ITT 
Sbjct  124  ----LNV-TVGFLILMAIITIINLFGQRVLKWVMNLATIGKLAALVLIIIAGVILLITTG  178

Query  189  HVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAP  248
              +N +           +  G   +   T ++  +A + A YAFTGFES+A+ +++M  P
Sbjct  179  ASSNLS------EVDQINQNGQKIVPTLTTTTFVMAIVSAFYAFTGFESVASGSDDMKDP  232

Query  249  DRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGA  308
            ++NLPRAIP+AI  +  +Y+  + VAM+L    +  +   V +AA   N   R +I+VGA
Sbjct  233  EKNLPRAIPLAILIIAVVYIGVVAVAMVLNPRALMTTKQVVAVAAIFKNEILRDVILVGA  292

Query  309  LISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALR  368
            L+SMFGINVA+SF APR+  A+A  G +   L+++ + + P+ +F I+  LA+  P+A  
Sbjct  293  LVSMFGINVASSFNAPRILEAMAREGQMSKALTKRTKNNFPIRTFFISVGLAILIPMAFE  352

Query  369  FDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSVG  427
            ++ ++L  L+ + RF+ FI+VPIA+I   R +  E      +NA+TD V+P+++IV+ V 
Sbjct  353  YNMVNLITLSAMVRFLGFIVVPIAVIQFYRGKTKEEVLKADKNAWTDVVVPILSIVIVVF  412

Query  428  LAVSYDYRCIFLVRG------GPNYFSIALIVITFIVVP  460
            L V Y+++  F V        G N+++IA++V  F+++P
Sbjct  413  LLVEYNWKAQFGVANAAGQIVGVNWYAIAMMVFGFVILP  451


>gi|406658791|ref|ZP_11066931.1| APC family amino acid transporter [Streptococcus iniae 9117]
 gi|405579006|gb|EKB53120.1| APC family amino acid transporter [Streptococcus iniae 9117]
Length=463

 Score =  306 bits (785),  Expect = 6e-81, Method: Compositional matrix adjust.
 Identities = 193/458 (43%), Positives = 276/458 (61%), Gaps = 22/458 (4%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L INSIIG GIFL+PG V+ ++G  A + Y  A IFA V+AI FA AA+Y
Sbjct  3    KKLGFYSIVLLTINSIIGTGIFLSPGSVVAMSGDKALLVYAFAAIFAAVLAITFAAAAKY  62

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            V   GA+YAYT AAFG  +G YVG+T  I ASIAWGV+ +  V T+L +   D       
Sbjct  63   VSKGGAAYAYTKAAFGDNLGFYVGITRYIAASIAWGVMGTGVVKTVLNIMHLDSTK----  118

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVN  191
               S  T+ F+  +G+LL INL G R  +  N  ST+GK  AL   IV G  I+   HVN
Sbjct  119  --ISNITIGFMCLMGILLVINLMGTRLFELINNLSTLGKLGALIMTIVVGCGIVIFGHVN  176

Query  192  NYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRN  251
             ++T  +   A     +G         S+  +A I A YAFTGFES+A+ +E+M+ P++N
Sbjct  177  QFSTIHTLKDA-----MGNPVGSNLDMSAWVMAVIAAFYAFTGFESVASGSEDMEEPEKN  231

Query  252  LPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALIS  311
            LPRAIP+AI  + AIY+  + +AM++    I AS   V LA    N     +I++GALIS
Sbjct  232  LPRAIPLAIAIIAAIYIGIVGIAMMINPGAIVASSQVVALADVFTNPIISNLIILGALIS  291

Query  312  MFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDN  371
            MFGINVAASF  PR+  A+A  G +P   +++     PMV+F  T  +A+  P+A RF+ 
Sbjct  292  MFGINVAASFHTPRVLEAMALQGQIPEYFAKRTDKGFPMVAFFTTIGIAILLPMAFRFNM  351

Query  372  LHLTGLAVIARFVQFIIVPIALIAL----ARSQAVEHAAVRRNAFTDKVLPLVAIVVSVG  427
              +  L+ I+RF+QFIIVP+A++       + +A+++  VR+N F D V+P +A+V++V 
Sbjct  352  TSIIVLSSISRFIQFIIVPLAVMTFYFGKEKGEALQN--VRKNVFVDVVIPSIALVLTVV  409

Query  428  LAVSYDYRCIF---LVRGG--PNYFSIALIVITFIVVP  460
            L   + +   F   L  G   PN F+I  +VI ++++P
Sbjct  410  LLYKFSWAQQFTLTLDNGQVVPNTFAIVAMVIGYVILP  447


>gi|304438962|ref|ZP_07398885.1| arginine permease [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372628|gb|EFM26211.1| arginine permease [Peptoniphilus duerdenii ATCC BAA-1640]
Length=459

 Score =  303 bits (775),  Expect = 8e-80, Method: Compositional matrix adjust.
 Identities = 181/469 (39%), Positives = 283/469 (61%), Gaps = 19/469 (4%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L INSIIG GIFL+PG V+  +G  A M Y LA IF+ V+A+ FA AA+Y
Sbjct  3    KKLGFYSIVLLTINSIIGTGIFLSPGSVVAKSGNKALMVYALAAIFSAVLAVTFAAAAKY  62

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            V   GA+YAYT AAFG  +G YVG+T  + A IAWGV+ +  V T+L++        + E
Sbjct  63   VSKGGAAYAYTKAAFGDDLGYYVGITRYVAAGIAWGVMGTAVVKTVLKIF-----GLNYE  117

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVN  191
             L +V T+ F+  +G+L+ INL G R  +  N  ST+GK  AL   I+ GL ++     N
Sbjct  118  SLTTV-TIGFMVLMGILMIINLLGTRVFEIINNLSTIGKVGALVTTIIVGLVMVLFLGEN  176

Query  192  NYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRN  251
            NY +A +  +     +LG         +    A I A YAFTGFES+A+A+E+M+ P++N
Sbjct  177  NY-SAINNLTDDAGQVLG----SNLDITGWVTAVIAAFYAFTGFESVASASEDMEEPEKN  231

Query  252  LPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALIS  311
            LPRAIP+AI  +  IY+  + +AM +    +  S + V LA    N   R +I+ GAL+S
Sbjct  232  LPRAIPLAIGIIAVIYMGIVGIAMAINPEALVTSKEVVALADVFSNRIIRNLIIGGALVS  291

Query  312  MFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDN  371
            MFGINVAASFG PR+  ++++ G +P   S++ +   P+ SF  T ++A+  PLA +F+ 
Sbjct  292  MFGINVAASFGTPRILESMSNQGQVPKIFSKRTENGFPIASFLTTITIAVVIPLAFKFNM  351

Query  372  LHLTGLAVIARFVQFIIVPIALIALARSQAVEHAA--VRRNAFTDKVLPLVAIVVSVGLA  429
              +  ++ I+RF+QF+IVPI++I     +  E     V+RN  TD ++P++A+ +++ L 
Sbjct  352  ASIMIISSISRFIQFVIVPISIIMFYYGKQKEEVMPNVKRNFATDVIIPIIALGLTLVLL  411

Query  430  VSYDYRCIFLV-----RGGPNYFSIALIVITFIVVPAMAYLHYYRIIRR  473
              +++   F       +   N F+I  +++ ++V+PA+  + + +I R+
Sbjct  412  YKFNWVGQFTTVDDSGQTHANMFAIISMIVGYVVLPAV-LMTWSKIKRK  459


>gi|395244088|ref|ZP_10421064.1| Amino acid transporter [Lactobacillus hominis CRBIP 24.179]
 gi|394483696|emb|CCI82072.1| Amino acid transporter [Lactobacillus hominis CRBIP 24.179]
Length=466

 Score =  303 bits (775),  Expect = 8e-80, Method: Compositional matrix adjust.
 Identities = 172/463 (38%), Positives = 277/463 (60%), Gaps = 22/463 (4%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L IN+IIG+GIFLTPG V+  AG  A + Y++A + A V+AI FA AA+Y
Sbjct  7    DKLGFWSIVLLAINAIIGSGIFLTPGSVVQQAGSKALIVYLIAALIASVLAISFAAAAKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV--AFPDKAWAD  129
            V  +GA+YAY+ AAFG  +G Y+G+    +AS+AWGV+A   + + + +    P+  W  
Sbjct  67   VTKSGAAYAYSKAAFGNNVGFYMGILRYFSASVAWGVMAVGVIKSTISIFGGNPNNNWN-  125

Query  130  AEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQH  189
                    T  FL  + V+  INLFG + +K+    +T+GK  AL   IV G+ ++ T  
Sbjct  126  -------VTWGFLILMAVITIINLFGQKVLKYVMNMATIGKLAALVLIIVAGVILLITTG  178

Query  190  VNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPD  249
             ++        +       G   +   T +   +A + A YAFTGFES+A+ +++M  P+
Sbjct  179  ASSNLNEVDQLTQN-----GQKIVPALTTTGFVMAVVSAFYAFTGFESVASGSDDMQDPE  233

Query  250  RNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGAL  309
            +NLPRAIP+AI  +  +Y+  + VAM+L    +  +   V +AA   N   R +I+VGAL
Sbjct  234  KNLPRAIPLAILVIAIVYIGVVAVAMILNPRALMTTKQVVAIAAIFQNEILRDVILVGAL  293

Query  310  ISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRF  369
            +SMFGINVA+SF APR+  A+A    L   L+++ + + P+ +F I+  LA+  P+A  +
Sbjct  294  VSMFGINVASSFNAPRILEAMARENQLSKALTKRTKNNFPIRTFFISVGLAILIPMAFEY  353

Query  370  DNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSVGL  428
            + ++L  L+ + RF+ FI+VP+A+I   R ++ E      RN +TD V P+V+I++ + L
Sbjct  354  NMVNLITLSAMVRFLGFIVVPLAVIQFFRGKSKEQVLDAPRNIWTDVVAPVVSIILVIFL  413

Query  429  AVSYDYRCIFLVRG------GPNYFSIALIVITFIVVPAMAYL  465
             V Y++R  F +        G N+++IA+++  FI++PA+ +L
Sbjct  414  LVEYNWRAQFGIMNAKGEFVGLNWYAIAMMIFGFIILPAIMFL  456


>gi|310658054|ref|YP_003935775.1| arginine permease [Clostridium sticklandii DSM 519]
 gi|308824832|emb|CBH20870.1| Arginine permease [[Clostridium] sticklandii]
Length=474

 Score =  302 bits (774),  Expect = 9e-80, Method: Compositional matrix adjust.
 Identities = 181/463 (40%), Positives = 280/463 (61%), Gaps = 17/463 (3%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             K GF S+V+L IN IIG GIFL+P  V+ +AG + P+ Y+LAG+FA ++AI FA+AA+Y
Sbjct  3    KKFGFWSIVLLTINGIIGTGIFLSPAGVVKVAGTYTPLVYILAGLFAIILAITFASAAKY  62

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            +  NG+ YAY+ AAFG  +G YVG+T     SIAWGV+A+  V T L +        DA+
Sbjct  63   ISKNGSGYAYSKAAFGNEVGYYVGITRFAAGSIAWGVMATAVVRTTLGIF----GGPDAQ  118

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVN  191
               ++ TL FL  +G+LLAI   G+   K A+  ST+GK  AL   +  GL I      N
Sbjct  119  TQGNI-TLGFLILMGILLAIVFSGSYITKIASNISTIGKITALLVAVFAGLAIFLKTGQN  177

Query  192  NYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRN  251
            N+ +   A        L V  +    F    LA   A YA+TGFES+A+AA EM+ P++N
Sbjct  178  NFMSINQAVDTA--GELIVKPMDASIFVGAILA---AFYAYTGFESVASAASEMEEPEKN  232

Query  252  LPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALIS  311
            LP+AIP+AI  V  IY+  +++AM++    I  S + V LA+A  N   + II+ GA+IS
Sbjct  233  LPKAIPLAIGIVALIYVSVVSIAMIINPEGILNSTEPVILASAFLNPLIKNIIIYGAVIS  292

Query  312  MFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDN  371
            MFGIN+AA+F  PR++ A+AD G LP  LS+K +  VP+ +F +TAS+A+A P+A +++ 
Sbjct  293  MFGINIAAAFSTPRIFEAMADEGQLPIFLSKKTKQGVPLFAFLVTASMAIAVPMAFQYNM  352

Query  372  LHLTGLAVIARFVQFIIVPIALIAL--ARSQAVEHAAVRRNAFTDKVLPLVAIVVSVGLA  429
              +  ++ ++RF+QF++VP+A+I     +++  +    ++  FTD V+P++A V S  L 
Sbjct  353  RGIMIISSVSRFIQFLVVPMAVIMFYYDKNKEPKIETAQKMFFTDVVIPILAFVTSAFLL  412

Query  430  VSYDYRCIFLVRGGP-----NYFSIALIVITFIVVPAMAYLHY  467
              + +   F +         N ++I  ++I ++++P   Y+ Y
Sbjct  413  YKFSWADQFSMVNDNGETVVNTYAICAMIIGYVILPIGVYIPY  455


>gi|383845658|gb|EID83058.1| amino acid permease [Streptococcus intermedius SK54]
Length=457

 Score =  301 bits (771),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 185/458 (41%), Positives = 275/458 (61%), Gaps = 22/458 (4%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L INSIIG GIFL+PG V+  AG  A   Y++A +FA V+A+ FA+AA+Y
Sbjct  3    KKLGFYSIVLLTINSIIGTGIFLSPGSVVATAGDKALSIYLMAAVFASVLAVTFASAAKY  62

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            V   GASYAY  AAFG  IG YVG+T  I ASIAWGVL +  V T+L +        D+ 
Sbjct  63   VAQGGASYAYAKAAFGENIGFYVGITRFIAASIAWGVLGTAVVKTVLNIF-----RLDSS  117

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVN  191
             L  + T+ F+  +G+L+ INL G +  +  N  ST+GK  AL   I+ G+ II    VN
Sbjct  118  NLVLI-TIGFVFLMGILMGINLLGTQIFELINNLSTIGKVGALLTTILVGVGIILLTGVN  176

Query  192  NYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRN  251
             + T  +   A    L    ++     S    A I A YAFTGFES+A+ A++M+AP++N
Sbjct  177  EFNTIKNLTDAAGTKLGANLDL-----SGYVTAVIAAFYAFTGFESVASGAQDMEAPEKN  231

Query  252  LPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALIS  311
            LP+AIP+AI  +  IY+  + +AM++    I A+ + V LAA   N   RTII+VGALIS
Sbjct  232  LPKAIPLAIGIIAVIYIGIVGIAMMINPAAIVATKEVVALAAVFTNPIIRTIILVGALIS  291

Query  312  MFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDN  371
            MFGINVAASF  PR+  A+A  G +P    ++ +   P  +F +T  +A+  P+A R++ 
Sbjct  292  MFGINVAASFHTPRILEAMALQGQVPEWFKKRTENGFPTRAFFVTIGIAILLPMAFRYNM  351

Query  372  LHLTGLAVIARFVQFIIVPIALIAL----ARSQAVEHAAVRRNAFTDKVLPLVAIVVSVG  427
              +  L+ I+RF+QF++VP+A+I       +   VE A  +++  TD ++P +  +++  
Sbjct  352  TSIIVLSSISRFIQFLVVPVAVIIFYFGKQKESIVETA--KKSFTTDVIIPFLGAILTAV  409

Query  428  LAVSYDYRCIFLV--RGGP---NYFSIALIVITFIVVP  460
            L   +++   F V  + G    N F+I+ +VI ++V+P
Sbjct  410  LLYKFNWSGQFTVVSKTGATSLNIFAISAMVIGYVVLP  447


>gi|392428847|ref|YP_006469858.1| arginine permease [Streptococcus intermedius JTH08]
 gi|355366578|gb|EHG14296.1| hypothetical protein HMPREF9177_00350 [Streptococcus intermedius 
F0413]
 gi|391757993|dbj|BAM23610.1| arginine permease homolog [Streptococcus intermedius JTH08]
Length=459

 Score =  301 bits (771),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 185/458 (41%), Positives = 275/458 (61%), Gaps = 22/458 (4%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L INSIIG GIFL+PG V+  AG  A   Y++A +FA V+A+ FA+AA+Y
Sbjct  5    KKLGFYSIVLLTINSIIGTGIFLSPGSVVATAGDKALSIYLMAAVFASVLAVTFASAAKY  64

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            V   GASYAY  AAFG  IG YVG+T  I ASIAWGVL +  V T+L +        D+ 
Sbjct  65   VAQGGASYAYAKAAFGENIGFYVGITRFIAASIAWGVLGTAVVKTVLNIF-----RLDSS  119

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVN  191
             L  + T+ F+  +G+L+ INL G +  +  N  ST+GK  AL   I+ G+ II    VN
Sbjct  120  NLVLI-TIGFVFLMGILMGINLLGTQIFELINNLSTIGKVGALLTTILVGVGIILLTGVN  178

Query  192  NYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRN  251
             + T  +   A    L    ++     S    A I A YAFTGFES+A+ A++M+AP++N
Sbjct  179  EFNTIKNLTDAAGTKLGANLDL-----SGYVTAVIAAFYAFTGFESVASGAQDMEAPEKN  233

Query  252  LPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALIS  311
            LP+AIP+AI  +  IY+  + +AM++    I A+ + V LAA   N   RTII+VGALIS
Sbjct  234  LPKAIPLAIGIIAVIYIGIVGIAMMINPAAIVATKEVVALAAVFTNPIIRTIILVGALIS  293

Query  312  MFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDN  371
            MFGINVAASF  PR+  A+A  G +P    ++ +   P  +F +T  +A+  P+A R++ 
Sbjct  294  MFGINVAASFHTPRILEAMALQGQVPEWFKKRTENGFPTRAFFVTIGIAILLPMAFRYNM  353

Query  372  LHLTGLAVIARFVQFIIVPIALIAL----ARSQAVEHAAVRRNAFTDKVLPLVAIVVSVG  427
              +  L+ I+RF+QF++VP+A+I       +   VE A  +++  TD ++P +  +++  
Sbjct  354  TSIIVLSSISRFIQFLVVPVAVIIFYFGKQKESIVETA--KKSFTTDVIIPFLGAILTAV  411

Query  428  LAVSYDYRCIFLV--RGGP---NYFSIALIVITFIVVP  460
            L   +++   F V  + G    N F+I+ +VI ++V+P
Sbjct  412  LLYKFNWSGQFTVVSKTGATSLNIFAISAMVIGYVVLP  449


>gi|403515969|ref|YP_006656789.1| amino acid permease [Lactobacillus helveticus R0052]
 gi|403081407|gb|AFR22985.1| amino acid permease [Lactobacillus helveticus R0052]
Length=463

 Score =  299 bits (765),  Expect = 1e-78, Method: Compositional matrix adjust.
 Identities = 177/458 (39%), Positives = 282/458 (62%), Gaps = 22/458 (4%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L IN+IIG+GIFLTPG V+  AG  A + Y  A IFA ++AI FA A++Y
Sbjct  7    DKLGFWSIVLLAINAIIGSGIFLTPGNVVQQAGSKALVVYFSAAIFAAILAISFAAASKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV--AFPDKAWAD  129
            V  +GA+YAY+ AAFG +IG Y+GV    +AS+AWGV+A   + + + +    P+KA   
Sbjct  67   VTKSGAAYAYSKAAFGDKIGFYMGVLRYFSASVAWGVMAVGVIKSTISIFGGDPNKA---  123

Query  130  AEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQH  189
                 SV T+ FL  + ++  INLFG R +KW    +T+GK  AL   IV G+ ++ T  
Sbjct  124  ----LSV-TVGFLVLMAIITIINLFGQRVLKWVMNLATIGKLAALILIIVAGVVLLITTG  178

Query  190  VNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPD  249
             +N+ +     +       G   +   T ++  +A + A YAFTGFES+A+ +E+M  P+
Sbjct  179  ASNHLSEVDQITQN-----GQKIVPTLTTTTFVMAIVSAFYAFTGFESVASGSEDMKDPE  233

Query  250  RNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGAL  309
            +NLPRAIP+AI  +  +Y+  + VAM++    +  +   V +AA   N   R +I+VGAL
Sbjct  234  KNLPRAIPLAILIIAVVYIGVVAVAMVMNPKALMTTKQVVAVAAIFNNEILRDVILVGAL  293

Query  310  ISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRF  369
            +SMFGINVA+SF APR+  A+A  G +   L+++ + + P+ +F I+ +LA+  P+A  +
Sbjct  294  VSMFGINVASSFNAPRILEAMAREGQMSKALTKRTKNNFPIRTFFISVALAVLIPMAFEY  353

Query  370  DNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSVGL  428
            + ++L  L+ + RF+ FI+VPIA+I   R +A E      +N  TD V+P+++IV+ V L
Sbjct  354  NMVNLITLSAMVRFLGFIVVPIAVIQFYRGKAKEDVLNADKNVLTDVVVPILSIVIVVFL  413

Query  429  AVSYDYRCIFLVRG------GPNYFSIALIVITFIVVP  460
             + Y+++  F V        G N+++IA+++  F+++P
Sbjct  414  LIEYNWKAQFGVANSAGQIVGVNWYAIAMMIFGFVLLP  451


>gi|169823908|ref|YP_001691519.1| putative amino acid transporter [Finegoldia magna ATCC 29328]
 gi|167830713|dbj|BAG07629.1| putative amino acid transporter [Finegoldia magna ATCC 29328]
Length=456

 Score =  298 bits (763),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 176/463 (39%), Positives = 280/463 (61%), Gaps = 21/463 (4%)

Query  10   AIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAA  69
            A  KLGF S+V+L INSIIG+GIFL+PG V+ ++G +AP  Y+ A  FA V+AI FA++A
Sbjct  4    ATKKLGFWSIVLLTINSIIGSGIFLSPGSVVKMSGKYAPFIYLAAAAFAAVLAITFASSA  63

Query  70   RYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWAD  129
            +YV   GASYAYT AAFG   G+Y+G+T   +A+IAWGV+A+  V T+L +       AD
Sbjct  64   KYVSKGGASYAYTKAAFGDNWGLYIGITRFFSAAIAWGVMATGVVKTMLNIF-----GAD  118

Query  130  AEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQH  189
            +   F+  T  F+  + +L  IN+ G R ++  +  ST+GK  AL   IV GL ++ T  
Sbjct  119  STN-FNYITAGFIILMTILFIINVCGTRILELVSNISTIGKLLALVTAIVAGLILVITTG  177

Query  190  VNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPD  249
             NN++   +  +    ++    ++G     ++ +A I A YAFTGFES+A+ +E+M+ P+
Sbjct  178  QNNFSQIETVTADVANNM----DLG-----TIVMAVIAAFYAFTGFESVASGSEDMEQPE  228

Query  250  RNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGAL  309
            +NLP+AIP+ I  +  IY   + V+M++    +  + + V L A   N   R+II+ G+L
Sbjct  229  KNLPKAIPLGIVIIAVIYFGIVLVSMMIDPVAMVNTKEVVALVAIFKNHIVRSIILYGSL  288

Query  310  ISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRF  369
            ISMFGINVAASF  PR+  ++A+   +P   +++     P+ S  ITA LA+  P+A ++
Sbjct  289  ISMFGINVAASFHTPRIIESMANENQVPKIFAKRTDKGFPLFSMVITAVLAIILPIAFKY  348

Query  370  DNLHLTGLAVIARFVQFIIVPIALIALARSQAVEH--AAVRRNAFTDKVLPLVAIVVSVG  427
                +  ++ IARF QFI+VP+ALI     +  +   + V++N FTD ++P+VA+++++ 
Sbjct  349  HMGSIMIISAIARFAQFIVVPLALIWFYYGKNKQEVVSGVKKNFFTDVIIPVVALLLTIV  408

Query  428  LAVSYDYRCIFLVRGG----PNYFSIALIVITFIVVPAMAYLH  466
            L   + +   F V       PNY +I  + I +++VP   Y +
Sbjct  409  LLAKFSWVKQFTVDNNGVLAPNYLAIVSMFIGYVLVPLFVYFY  451


>gi|58338146|ref|YP_194731.1| amino acid permease [Lactobacillus acidophilus NCFM]
 gi|227902673|ref|ZP_04020478.1| APC family amino acid-polyamine-organocation transporter [Lactobacillus 
acidophilus ATCC 4796]
 gi|58255463|gb|AAV43700.1| amino acid permease [Lactobacillus acidophilus NCFM]
 gi|227869579|gb|EEJ77000.1| APC family amino acid-polyamine-organocation transporter [Lactobacillus 
acidophilus ATCC 4796]
Length=463

 Score =  297 bits (760),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 176/459 (39%), Positives = 284/459 (62%), Gaps = 24/459 (5%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L IN+IIG+GIFLTPG V+  AG  A + Y +A IFA ++AI FA A++Y
Sbjct  7    DKLGFWSIVLLAINAIIGSGIFLTPGSVVQQAGSKALIVYFIAAIFAAILAISFAAASKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV--AFPDKAWAD  129
            V  +GA+YAY+ AAFG+++G Y+GV    +AS+AWGV+A   + + + +    P+KA   
Sbjct  67   VTKSGAAYAYSKAAFGKKVGFYMGVLRYFSASVAWGVMAVGVIKSTISIFGGDPNKA---  123

Query  130  AEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGG-LWIITTQ  188
                 +V T+ FL  + ++  INLFG R +KW    +T+GK  AL   I+ G + +ITT 
Sbjct  124  ----LNV-TVGFLILMAIITIINLFGQRVLKWVMNLATIGKLAALVLIIIAGVILLITTG  178

Query  189  HVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAP  248
              +N A           +  G   +   T ++  +A + A YAFTGFES+A+ +++M  P
Sbjct  179  ASSNLA------EVDQITQNGQKIVPTLTTTTFVMAIVSAFYAFTGFESVASGSDDMKNP  232

Query  249  DRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGA  308
            ++NLPRAIP+AI  +  +Y+  + VAM+L    +  +   V +AA   N   R II+VGA
Sbjct  233  EKNLPRAIPLAILIIAVVYIGVVAVAMVLNPKALMTTKQVVAIAAIFNNEILRDIILVGA  292

Query  309  LISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALR  368
            L+SMFGINVA+SF APR+  A+A  G +   L+++ + + P+ +F I+  LA+  P+A  
Sbjct  293  LVSMFGINVASSFNAPRILEAMAREGQMSKALTKRTKNNFPIRTFFISVGLAILIPMAFE  352

Query  369  FDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSVG  427
            ++ ++L  L+ + RF+ FI+VPIA+I   R +  E      +NA+TD V+P+++I++ V 
Sbjct  353  YNMVNLITLSAMVRFLGFIVVPIAVIQFYRGKTKEEVLKADKNAWTDVVVPILSIIIVVF  412

Query  428  LAVSYDYRCIFLVRG------GPNYFSIALIVITFIVVP  460
            L + Y+++  F +        G N+++IA+++  F+++P
Sbjct  413  LLIEYNWQAQFGITNAAGQVVGVNWYAIAMMIFGFVLLP  451


>gi|161508170|ref|YP_001578141.1| amino acid permease [Lactobacillus helveticus DPC 4571]
 gi|160349159|gb|ABX27833.1| amino acid permease [Lactobacillus helveticus DPC 4571]
Length=463

 Score =  296 bits (758),  Expect = 8e-78, Method: Compositional matrix adjust.
 Identities = 175/458 (39%), Positives = 282/458 (62%), Gaps = 22/458 (4%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L IN+IIG+GIFLTPG V+  AG  A + Y +A IFA ++AI FA A++Y
Sbjct  7    DKLGFWSIVLLAINAIIGSGIFLTPGSVVQQAGSKALVVYFIAAIFAAILAISFAAASKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV--AFPDKAWAD  129
            V  +GA+YAY+ AAFG +IG Y+GV    +AS+AWGV+A   + + + +    P+KA   
Sbjct  67   VTKSGAAYAYSKAAFGDKIGFYMGVLRYFSASVAWGVMAVGVIKSTISIFGGDPNKA---  123

Query  130  AEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQH  189
                 SV T+ FL  + ++  INLFG R +KW    +T+GK  AL   IV G+ ++ T  
Sbjct  124  ----LSV-TVGFLVLMAIITIINLFGQRVLKWVMNLATIGKLAALILIIVAGVVLLITTG  178

Query  190  VNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPD  249
             +++ +     +       G   +   T ++  +A + A YAFTGFES+A+ +E+M  P+
Sbjct  179  ASSHLSEVDQITQN-----GQKIVPTLTTTTFVMAIVSAFYAFTGFESVASGSEDMKDPE  233

Query  250  RNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGAL  309
            +NLPRAIP+AI  +  +Y+  + V M++    +  +   V +AA   N   R +I+VGAL
Sbjct  234  KNLPRAIPLAILIIAVVYIGIVAVTMVMNPKALMTTKQVVAVAAIFNNEILRDVILVGAL  293

Query  310  ISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRF  369
            +SMFGINVA+SF APR+  A+A  G +   L+++ + + P+ +F I+ +L++  P+A  +
Sbjct  294  VSMFGINVASSFNAPRILEAMAREGQMSKALTKRTKNNFPIRTFFISVALSVLIPMAFEY  353

Query  370  DNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSVGL  428
            + ++L  L+ + RF+ FI+VPIA+I   R +A E      +N  TD V+P+++IV+ V L
Sbjct  354  NMVNLITLSAMVRFLGFIVVPIAVIQFYRGKAKEDVLNADKNVLTDVVVPILSIVIVVFL  413

Query  429  AVSYDYRCIFLVRGGP------NYFSIALIVITFIVVP  460
             + Y+++  F V  G       N+++IA++V  F+++P
Sbjct  414  LIEYNWKAQFGVANGAGQIVGVNWYAIAMMVFGFVLLP  451


>gi|227893927|ref|ZP_04011732.1| APC family amino acid-polyamine-organocation transporter [Lactobacillus 
ultunensis DSM 16047]
 gi|227864231|gb|EEJ71652.1| APC family amino acid-polyamine-organocation transporter [Lactobacillus 
ultunensis DSM 16047]
Length=472

 Score =  295 bits (756),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 176/464 (38%), Positives = 286/464 (62%), Gaps = 34/464 (7%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L IN+IIG+GIFLTPG V+  AG  A + Y +A IFA ++AI FA A++Y
Sbjct  15   DKLGFWSIVLLAINAIIGSGIFLTPGSVVQQAGSKALIVYFIAAIFAAILAISFAAASKY  74

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            V  +GA+YAY+ AAFG+++G Y+GV    +AS+AWGV+A   + +++ +        D  
Sbjct  75   VTKSGAAYAYSKAAFGKKVGFYMGVLRYFSASVAWGVMAVGVIKSMISIF-----GGDPN  129

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVN  191
            +  +V T+ FL  + ++  INLFG R +KW    +T+GK  AL   IV G+ ++      
Sbjct  130  KTLNV-TVGFLVLMAIITIINLFGQRVLKWVMNLATIGKLAALVLIIVAGVVLLI-----  183

Query  192  NYATAWSAYSATPYSLLGVAEIGKG--------TFSSMALATIVALYAFTGFESIANAAE  243
              AT  S+      +L  V +I +G        T ++  +A + A YAFTGFES+A+ +E
Sbjct  184  --ATGASS------NLSEVDQITQGGQKIVPTLTTTTFVMAIVSAFYAFTGFESVASGSE  235

Query  244  EMDAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTI  303
            +M  P++NLPRAIP+AI  +  +Y+  + VAM+L    +  +   V +AA   N   R +
Sbjct  236  DMKDPEKNLPRAIPLAILVIAIVYIGVVAVAMVLNPKALMTTKQVVAIAAIFDNKILRDV  295

Query  304  IVVGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAF  363
            I+VGAL+SMFGINVA+SF APR+  A+A  G +   L+++ + + P+ +F I+ +LA+  
Sbjct  296  ILVGALVSMFGINVASSFNAPRILEAMAREGQMSKALTKRTKNNFPIRTFFISVALAILI  355

Query  364  PLALRFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAI  422
            P+A  ++ ++L  L+ + RF+ FI+VP+A+I   R +A E+     +N  TD V+P+++I
Sbjct  356  PMAFEYNMVNLITLSAMVRFLGFIVVPLAVIQFYRDKAKENVLKADKNVVTDVVVPILSI  415

Query  423  VVSVGLAVSYDYRCIFLVRG------GPNYFSIALIVITFIVVP  460
            V+ V L + Y+++  F V        G N+++I +++  F+++P
Sbjct  416  VIVVFLLIEYNWQAQFGVANAAGKIVGVNWYAIVMMIFGFVILP  459


>gi|148543318|ref|YP_001270688.1| amino acid permease-associated protein [Lactobacillus reuteri 
DSM 20016]
 gi|184152727|ref|YP_001841068.1| amino acid transport protein [Lactobacillus reuteri JCM 1112]
 gi|227364386|ref|ZP_03848478.1| APC family amino acid-polyamine-organocation transporter [Lactobacillus 
reuteri MM2-3]
 gi|325683585|ref|ZP_08163101.1| APC family amino acid transporter [Lactobacillus reuteri MM4-1A]
 gi|148530352|gb|ABQ82351.1| amino acid/polyamine/organocation transporter, APC superfamily 
[Lactobacillus reuteri DSM 20016]
 gi|183224071|dbj|BAG24588.1| amino acid transport protein [Lactobacillus reuteri JCM 1112]
 gi|227070572|gb|EEI08903.1| APC family amino acid-polyamine-organocation transporter [Lactobacillus 
reuteri MM2-3]
 gi|324977935|gb|EGC14886.1| APC family amino acid transporter [Lactobacillus reuteri MM4-1A]
Length=464

 Score =  295 bits (755),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 177/457 (39%), Positives = 274/457 (60%), Gaps = 17/457 (3%)

Query  13   KLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARYV  72
            KLGF S+V+L INSIIG+GIFLTPG V+ + G  AP+AY  A IFA ++AI FA AA+YV
Sbjct  5    KLGFWSIVLLAINSIIGSGIFLTPGSVVSMVGTKAPLAYFFAAIFASILAITFAAAAKYV  64

Query  73   RTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAEQ  132
              +GA+Y+Y  AA+G  +G Y+GV    +AS+AWGV+A      ++R  F    W    Q
Sbjct  65   NKSGAAYSYAKAAYGENMGFYMGVVRFFSASVAWGVMAV----GVIRTTFSIFGW---NQ  117

Query  133  LFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVNN  192
             F   TL F+  + +++ IN+ G R     N  STVGK  AL+  I+ G+ I+     N+
Sbjct  118  SFGNITLGFVVLMLIIMVINMMGRRIFTIINDLSTVGKLGALALIIIAGVIILLKTGENH  177

Query  193  YATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRNL  252
            +        +T  SL     I   T S   +A I A YAFTGFE++A  +E+M  P++NL
Sbjct  178  FNELNHLTDSTGKSL-----IPAFTTSGFVMAVISAFYAFTGFEAVATGSEDMKDPEKNL  232

Query  253  PRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALISM  312
            PRAIP+AI  +  +Y+ T+ VAM++    +  +   V L A   N   + +I+VGA+ISM
Sbjct  233  PRAIPLAILVIAIVYICTIAVAMMVNPAAMVTTKQVVALVAIFHNKVLQDVILVGAIISM  292

Query  313  FGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDNL  372
            FGINVA+SF  PR+  A+A+   +P  ++R+ + + P+VSF IT  LA+  P+A +++  
Sbjct  293  FGINVASSFHTPRVLEAMANENQVPQFIARRTKRNFPLVSFIITLVLAVGIPMAFQYNLP  352

Query  373  HLTGLAVIARFVQFIIVPIALIALARSQAVEH-AAVRRNAFTDKVLPLVAIVVSVGLAVS  431
             +  ++   RF +FI++P+ +I   R    E      +N FTD +LP++++V+++ L + 
Sbjct  353  TIIVISATVRFFEFIVIPLGVIRFYRGTNREKILPAHKNFFTDVILPILSVVITLFLLMR  412

Query  432  YDYRCIFLV-RGG---PNYFSIALIVITFIVVPAMAY  464
            YD+   F + R G   PN+F+I  +V  F+++P + +
Sbjct  413  YDWISEFSINRAGHLMPNWFAIFGMVFGFVILPLILF  449


>gi|309813124|ref|ZP_07706848.1| amino acid permease [Dermacoccus sp. Ellin185]
 gi|308432928|gb|EFP56836.1| amino acid permease [Dermacoccus sp. Ellin185]
Length=523

 Score =  291 bits (746),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 192/465 (42%), Positives = 284/465 (62%), Gaps = 16/465 (3%)

Query  7    RGYAIHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFA  66
            R  +  K G  S+V+L IN IIG+GIFL+PG V+ +AG + P+ YV+AG+FA V+A+ FA
Sbjct  55   RKTSRAKFGLASIVLLTINGIIGSGIFLSPGAVMKVAGTWTPLVYVIAGVFAAVLAVTFA  114

Query  67   TAARYVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKA  126
             AAR+   NGA++AYT  AFG  +G YVG+T  + A+IAWGV+A+  V+T+L        
Sbjct  115  AAARWTSENGAAFAYTRVAFGDDVGFYVGLTRFVGAAIAWGVMATAVVTTVL------TV  168

Query  127  WADAEQLFSVK-TLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWII  185
            +   E + +   T+ F+  + VLLAINL G R  K  N  ST+GK  AL   IV GL ++
Sbjct  169  FGGHEAVTTTNITIGFVLLMVVLLAINLAGTRITKVVNNISTIGKVAALVLTIVAGLVVL  228

Query  186  TTQHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEM  245
                 N+++    A+   P     V  +    F    LA   A YAFTGFE   +AA EM
Sbjct  229  AMTGDNHFSDL--AHLKGPDGSPLVPSMDTTAFVGAMLA---AFYAFTGFEGAGSAASEM  283

Query  246  DAPDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIV  305
            + P RNLPRAIPI +  V  +Y+  ++VAM++    +  S D V LA+A  N+  R +IV
Sbjct  284  EDPARNLPRAIPIGVAVVIVVYVAVVSVAMMINPTGVLESKDAVVLASAFDNSIVRDLIV  343

Query  306  VGALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPL  365
            +GAL+SMFGINVAASF  PR++ A++   +LP   SR +Q  VP+V+F +TA LA+  P+
Sbjct  344  LGALVSMFGINVAASFNTPRIFDAMSRRRMLPAAASRTSQRGVPVVAFVVTAVLAIVVPM  403

Query  366  ALRFDNLHLTGLAVIARFVQFIIVPIALIA--LARSQAVEHAAVRRNAFTDKVLPLVAIV  423
            A  +    +  ++ + RFVQF++VP+ALI   L R++   +  V+R+   D V P+++I 
Sbjct  404  AFGYSMRGIMVISSVTRFVQFVMVPLALILCFLGRTRHRPN-DVKRSVLLDVVFPILSIA  462

Query  424  VSVGLAVSYDYRCIFLVRGGP-NYFSIALIVITFIVVPAMAYLHY  467
             SV L V +D+R  F   GG  N +++A +++ ++V+PA  YL +
Sbjct  463  ASVLLMVEFDWRGQFSNPGGGLNLWAVAAMIVGYVVLPAALYLPW  507


>gi|295693807|ref|YP_003602417.1| amino acid permease [Lactobacillus crispatus ST1]
 gi|295031913|emb|CBL51392.1| Amino acid permease [Lactobacillus crispatus ST1]
Length=465

 Score =  291 bits (744),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 174/461 (38%), Positives = 284/461 (62%), Gaps = 26/461 (5%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L IN+IIG+GIFLTPG V+  AG  A + Y++A IFA ++AI FA A++Y
Sbjct  7    DKLGFWSIVLLAINAIIGSGIFLTPGSVVQQAGSKALVVYLIAAIFAAILAISFAAASKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV--AFPDKAWAD  129
            V  +GA+YAY+ AAFG++IG Y+GV    +AS+AWGV+A   + + + +    P+KA   
Sbjct  67   VTKSGAAYAYSKAAFGKKIGFYMGVLRYFSASVAWGVMAVGVIKSTISIFGGNPNKA---  123

Query  130  AEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGL-WIITTQ  188
                 +V T+ FL  + ++  INLFG + +K+    +T+GK  AL   I+ G+  +ITT 
Sbjct  124  ----INV-TIGFLILMAIITVINLFGQKVVKYVMNLATIGKLAALVLIIIAGVVLLITTG  178

Query  189  HVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAP  248
              +N             +  G   +   T ++  +A + A YAFTGFES+A+ +E+M  P
Sbjct  179  ASSNLG------QVDQLTQNGQKIVPTLTTTTFVMAIVSAFYAFTGFESVASGSEDMKNP  232

Query  249  DRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGA  308
            ++NLPRAIP+AI  +  +Y+  + VAM+L    +  +   V +AA   N   R +I+VGA
Sbjct  233  EKNLPRAIPLAILIIAVVYIGVVAVAMVLNPRALMTTKQVVAIAAIFNNEILRDVILVGA  292

Query  309  LISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALR  368
            L+SMFGINVA+SF APR+  A+A  G +   L+++ + + P+ +F I+  LA+  P+A  
Sbjct  293  LVSMFGINVASSFNAPRILEAMAREGQMSQALTKRTKNNFPIRTFFISVGLAILIPMAFE  352

Query  369  FDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAV---RRNAFTDKVLPLVAIVVS  425
            ++ ++L  L+ + RF+ FI+VPIA+I   R +  E   +    +N +TD V+P+++I++ 
Sbjct  353  YNMVNLITLSAMVRFLGFIVVPIAVIQFYRGKGTEKQDILNADKNVWTDVVVPILSIILV  412

Query  426  VGLAVSYDYRCIFLVRG------GPNYFSIALIVITFIVVP  460
            + L V Y+++  F V        G N+++IA+++  F+++P
Sbjct  413  IFLLVEYNWKAQFGVANNAGQVIGVNWYAIAMMIFGFVLLP  453


>gi|295425933|ref|ZP_06818610.1| amino acid permease [Lactobacillus amylolyticus DSM 11664]
 gi|295064363|gb|EFG55294.1| amino acid permease [Lactobacillus amylolyticus DSM 11664]
Length=466

 Score =  290 bits (743),  Expect = 5e-76, Method: Compositional matrix adjust.
 Identities = 170/460 (37%), Positives = 281/460 (62%), Gaps = 20/460 (4%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V L IN+IIG+GIFLTPG V+  AG  A +AY +A IFA ++A+ FA AA+Y
Sbjct  7    DKLGFWSIVFLAINAIIGSGIFLTPGSVVQQAGSKALIAYFIAAIFAAILAVTFAAAAKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            V  +GA+YAY+ AAFG +IG Y+GV    +AS+AWGV+A   V + + +      +    
Sbjct  67   VTKSGAAYAYSKAAFGDKIGFYMGVLRYFSASVAWGVMAVGVVRSTISI------FGGNS  120

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVN  191
            + F   T+ F+  + ++  INLFG R +KW    +T+GK  AL   IV G+ ++ +   +
Sbjct  121  EDFGTVTIGFIVLMALITIINLFGQRVVKWVMNLATIGKLAALILIIVAGVVLLISTGAS  180

Query  192  NYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRN  251
            ++       +       G   +   T +S  +A + A YAFTGFES+A+ +E+M  P++N
Sbjct  181  SHLNEVDQITQN-----GQKIVPTLTTTSFVMAIVSAFYAFTGFESVASGSEDMKDPEKN  235

Query  252  LPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALIS  311
            LPRAIP+AI  +  +Y+  + VAM+L    +  +   V +AA   N   R +I+VGAL+S
Sbjct  236  LPRAIPLAILVIALVYIGVVAVAMVLDPKALMTTKQVVAVAAIFKNEILRDVILVGALVS  295

Query  312  MFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDN  371
            MFGINV +SF APR+  A+A    +   L+++ + + P+ +F I+  LA+  P+A +++ 
Sbjct  296  MFGINVGSSFNAPRILEAMARENQMSKALTKRTKNNFPIRTFFISVVLAILIPMAFQYNM  355

Query  372  LHLTGLAVIARFVQFIIVPIALIALARSQAVEHAAV---RRNAFTDKVLPLVAIVVSVGL  428
            ++L  L+ + RF+ FI+VP+A+I   R + ++   +    +N  TD V+P+++I + V L
Sbjct  356  VNLITLSAMVRFLGFIVVPLAVIRFYRGKGIDKENILDADKNVLTDIVMPVLSIALVVFL  415

Query  429  AVSYDYRCIFLV---RG---GPNYFSIALIVITFIVVPAM  462
             + YD++  F++   +G   G N+++IA+++  FI++P +
Sbjct  416  LIEYDWKTQFVIINTQGQFVGINWYAIAMMIFGFIILPLL  455


>gi|229826233|ref|ZP_04452302.1| hypothetical protein GCWU000182_01605 [Abiotrophia defectiva 
ATCC 49176]
 gi|229789103|gb|EEP25217.1| hypothetical protein GCWU000182_01605 [Abiotrophia defectiva 
ATCC 49176]
Length=458

 Score =  290 bits (741),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 186/461 (41%), Positives = 277/461 (61%), Gaps = 17/461 (3%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             K+ F S+V L INSIIG GIFL+PG V   AG  AP  Y+ A +FA V+A+ FA A++Y
Sbjct  3    KKMKFWSIVFLTINSIIGTGIFLSPGGVTKQAGSMAPFIYLCAAVFAAVLAVTFAAASKY  62

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            V  NGA+Y+Y  AAFG   G+++GVT  ++ASIAWGV+A+  V   L +        D++
Sbjct  63   VVKNGAAYSYAKAAFGANTGMFIGVTRYVSASIAWGVMATGVVKNALSIL-----GMDSK  117

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVN  191
             L +V T+ FL  + +L  IN+ G   +   +  ST GK  AL+  IV G+ II     N
Sbjct  118  NLVNV-TIGFLVLMLILFIINVKGTAFLTLISDLSTAGKVAALAITIVAGIVIIIMTGEN  176

Query  192  NYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRN  251
            +        +A   SL+   +      +    A I A YAFTGFES+A+ A +M+ P++N
Sbjct  177  HITDVDMLKNAEGGSLIPTMDA-----TMFVTAVISAFYAFTGFESVASGASDMENPEKN  231

Query  252  LPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALIS  311
            LPRAIP+AI  +  IY   + VAM++    +  SD+ V LAA  GN   R II++GALIS
Sbjct  232  LPRAIPLAIGIIAVIYFGIVLVAMMINPVALVQSDEVVILAAVFGNKIIRGIIIIGALIS  291

Query  312  MFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDN  371
            MFGINVA+SF APR+  A+A  G+LP  L ++N  D+PM +F +TA+LA+  P++  +D 
Sbjct  292  MFGINVASSFHAPRVCEAMAKDGILPAFLGKRNSKDIPMNAFILTAALAIVVPMSFMYDM  351

Query  372  LHLTGLAVIARFVQFIIVPIALIA-LARSQAVEHAAVRRNAFTDKVLPLVAIVVSVGLAV  430
              +  ++ IARF QFIIVP+ +I      Q  E    ++N  TD VLP++++ ++V L  
Sbjct  352  QGIMIISSIARFAQFIIVPLGVIVFFMGKQKEEIIDAKKNVITDVVLPIISVALTVLLLY  411

Query  431  SYDYRCIFLVRGGP-----NYFSIALIVITFIVVPAMAYLH  466
             ++++  F V G       N+++I  ++I ++++P +AY H
Sbjct  412  KFNWKGQFSVTGEDGVAHLNWYAITAMIIGYVILPIVAYFH  452


>gi|238853517|ref|ZP_04643893.1| amino acid transporter [Lactobacillus gasseri 202-4]
 gi|238833875|gb|EEQ26136.1| amino acid transporter [Lactobacillus gasseri 202-4]
Length=466

 Score =  288 bits (738),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 176/479 (37%), Positives = 283/479 (60%), Gaps = 28/479 (5%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L INSIIG+GIFLTPG V+  AG  A + Y +A IFA ++A+ FA AA+Y
Sbjct  7    SKLGFWSIVLLAINSIIGSGIFLTPGSVVQQAGSKALIVYFIAAIFASILAVSFAAAAKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV--AFPDKAWAD  129
            V  +GA+YAY+ AAFG  +G Y+G+    +AS+AWGV+A   + + + +    P+K  + 
Sbjct  67   VTKSGAAYAYSKAAFGNNVGFYMGILRYFSASVAWGVMAVGVIKSTISIFGGNPNKTMS-  125

Query  130  AEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQH  189
                    T+ FL  + V+  INLFG + +K+    +T+GK  AL   IV G+ ++    
Sbjct  126  -------VTIGFLILMAVITIINLFGQKVVKYVMNLATLGKLAALVLIIVAGVVLLIMTG  178

Query  190  VNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPD  249
             ++        +       G   +   T +   +A + A YAFTGFES+A+ +E+M  P 
Sbjct  179  ASSNLNEVDQITQN-----GQKIVPTLTTTGFVMAIVSAFYAFTGFESVASGSEDMKNPA  233

Query  250  RNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGAL  309
            +NLPRAIP+AI  +  +Y+  + VAM+L    +  +   V +AA   N   R +I+VGAL
Sbjct  234  KNLPRAIPLAIIVIAIVYIGVVAVAMVLDPKALMTTKQVVAIAAIFKNEILRDVILVGAL  293

Query  310  ISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRF  369
            ISMFGINVA+SF APR+  A+A        L+++ + + P+ +F I+  LA+  P+A  +
Sbjct  294  ISMFGINVASSFNAPRILEAMARENQFSKSLTKRTKNNFPIRTFFISVLLAILIPMAFEY  353

Query  370  DNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSVGL  428
            + ++L  L+ + RF+ FI+VP+A+I   R +  E     ++N +TD V+P+++IV+ + L
Sbjct  354  NMVNLITLSAMVRFLGFIVVPLAVIQFYRGKTAESVLDAQKNIWTDIVVPILSIVLVIFL  413

Query  429  AVSYDYRCIFLVRG------GPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPSTR  481
             V Y+++  F V        G N+++IA+++  FIV+P + +     II R  DR +++
Sbjct  414  LVEYNWKAQFGVVNASGQVTGINWYAIAMMIFGFIVLPLIMF-----IISR-KDRKASK  466


>gi|300362846|ref|ZP_07059016.1| APC family amino acid-polyamine-organocation transporter [Lactobacillus 
gasseri JV-V03]
 gi|300352896|gb|EFJ68774.1| APC family amino acid-polyamine-organocation transporter [Lactobacillus 
gasseri JV-V03]
Length=466

 Score =  288 bits (738),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 180/481 (38%), Positives = 283/481 (59%), Gaps = 32/481 (6%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L INSIIG+GIFLTPG V+  AG  A + Y +A IFA ++A+ FA AA+Y
Sbjct  7    SKLGFWSIVLLAINSIIGSGIFLTPGSVVQQAGSKALIVYFIAAIFASILAVSFAAAAKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV--AFPDKAWAD  129
            V  +GA+YAY+ AAFG  +G Y+G+    +AS+AWGV+A   + + + +    P+K  + 
Sbjct  67   VTKSGAAYAYSKAAFGNNVGFYMGILRYFSASVAWGVMAVGVIKSTISIFGGNPNKTMS-  125

Query  130  AEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGG--LWIITT  187
                    T+ FL  + V+  INLFG + +K+    +T+GK  AL   IV G  L I+T 
Sbjct  126  -------VTIGFLILMAVITIINLFGQKVVKYVMNLATLGKLAALVLIIVAGVVLLIVTG  178

Query  188  QHVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDA  247
               N              +  G   +   T +   +A + A YAFTGFES+A+ +E+M  
Sbjct  179  ASSN-------LNEVDQITQNGQKIVPTLTTTGFVMAIVSAFYAFTGFESVASGSEDMKN  231

Query  248  PDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVG  307
            P +NLPRAIP+AI  +  +Y+  + VAM+L    +  +   V +AA   N   R +I+VG
Sbjct  232  PAKNLPRAIPLAIIVIAIVYIGVVAVAMVLDPKALMTTKQVVAIAAIFKNEILRDVILVG  291

Query  308  ALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLAL  367
            ALISMFGINVA+SF APR+  A+A        L+++ + + P+ +F I+  LA+  P+A 
Sbjct  292  ALISMFGINVASSFNAPRILEAMARENQFSKSLTKRTKNNFPIRTFFISVLLAILIPMAF  351

Query  368  RFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSV  426
             ++ ++L  L+ + RF+ FI+VP+A+I   R +  E     ++N +TD V+P+++IV+ +
Sbjct  352  EYNMVNLITLSAMVRFLGFIVVPLAVIQFYRGKTAEPVLDAQKNIWTDIVVPILSIVLVI  411

Query  427  GLAVSYDYRCIFLVRG------GPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPST  480
             L V Y+++  F V        G N+++IA+++  FIV+P + +     II R  DR ++
Sbjct  412  FLLVEYNWKAQFGVVNASGQVTGINWYAIAMMIFGFIVLPLIMF-----IISR-KDRKAS  465

Query  481  R  481
            +
Sbjct  466  K  466


>gi|116630341|ref|YP_815611.1| amino acid transporter [Lactobacillus gasseri ATCC 33323]
 gi|116095923|gb|ABJ61075.1| amino acid/polyamine/organocation transporter, APC superfamily 
[Lactobacillus gasseri ATCC 33323]
Length=466

 Score =  288 bits (737),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 176/479 (37%), Positives = 283/479 (60%), Gaps = 28/479 (5%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L INSIIG+GIFLTPG V+  AG  A + Y +A IFA ++AI FA AA+Y
Sbjct  7    SKLGFWSIVLLAINSIIGSGIFLTPGSVVQQAGSKALIVYFIAAIFASILAISFAAAAKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV--AFPDKAWAD  129
            V  +GA+YAY+ AAFG  +G Y+G+    +AS+AWGV+A   + + + +    P+K  + 
Sbjct  67   VTKSGAAYAYSKAAFGNNVGFYMGILRYFSASVAWGVMAVGVIKSTISIFGGNPNKTMS-  125

Query  130  AEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQH  189
                    T+ FL  + V+  INLFG + +K+    +T+GK  AL   IV G+ ++    
Sbjct  126  -------VTIGFLILMAVITIINLFGQKVVKYVMNLATIGKLAALVLIIVAGVVLLIMTG  178

Query  190  VNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPD  249
             ++        +       G   +   T +   +A + A YAFTGFES+A+ +++M  P 
Sbjct  179  ASSNLNEVDQITQN-----GQKIVPTLTTTGFVMAIVSAFYAFTGFESVASGSDDMKNPA  233

Query  250  RNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGAL  309
            +NLPRAIP+AI  +  +Y+  + VAM+L    +  +   V +AA   N   R +I+VGAL
Sbjct  234  KNLPRAIPLAIIVIAIVYIGVVAVAMMLDPKSLMTTKQVVAIAAIFKNEILRDVILVGAL  293

Query  310  ISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRF  369
            ISMFGINVA+SF APR+  A+A        L+++ + + P+ +F I+  LA+  P+A  +
Sbjct  294  ISMFGINVASSFNAPRILEAMARENQFSKSLTKRTKNNFPIRTFFISVLLAILIPMAFEY  353

Query  370  DNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSVGL  428
            + ++L  L+ + RF+ FI+VP+A+I   R +  E     ++N +TD V+P+++IV+ + L
Sbjct  354  NMVNLITLSAMVRFLGFIVVPLAVIQFYRGKTAETVLNAQKNIWTDIVVPILSIVLVIFL  413

Query  429  AVSYDYRCIFLVRG------GPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPSTR  481
             V Y+++  F V        G N+++IA+++  FIV+P    L  + I R+  DR +++
Sbjct  414  LVEYNWKAQFGVVNASGQVTGINWYAIAMMIFGFIVLP----LIMFFISRK--DRKASK  466


>gi|282852303|ref|ZP_06261648.1| amino acid permease [Lactobacillus gasseri 224-1]
 gi|282556582|gb|EFB62199.1| amino acid permease [Lactobacillus gasseri 224-1]
 gi|398399792|gb|EJN53410.1| APC family amino acid-polyamine-organocation transporter [Lactobacillus 
gasseri CECT 5714]
Length=466

 Score =  288 bits (737),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 176/479 (37%), Positives = 283/479 (60%), Gaps = 28/479 (5%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L INSIIG+GIFLTPG V+  AG  A + Y +A IFA ++AI FA AA+Y
Sbjct  7    SKLGFWSIVLLAINSIIGSGIFLTPGSVVQQAGSKALIVYFIAAIFASILAISFAAAAKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV--AFPDKAWAD  129
            V  +GA+YAY+ AAFG  +G Y+G+    +AS+AWGV+A   + + + +    P+K  + 
Sbjct  67   VTKSGAAYAYSKAAFGNNVGFYMGILRYFSASVAWGVMAVGVIKSTISIFGGNPNKTMS-  125

Query  130  AEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQH  189
                    T+ FL  + V+  INLFG + +K+    +T+GK  AL   IV G+ ++    
Sbjct  126  -------VTIGFLILMAVITIINLFGQKVVKYVMNLATIGKLAALVLIIVAGVVLLIMTG  178

Query  190  VNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPD  249
             ++        +       G   +   T +   +A + A YAFTGFES+A+ +++M  P 
Sbjct  179  ASSNLNEVDQITQN-----GQKIVPTLTTTGFVMAIVSAFYAFTGFESVASGSDDMKNPA  233

Query  250  RNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGAL  309
            +NLPRAIP+AI  +  +Y+  + VAM+L    +  +   V +AA   N   R +I+VGAL
Sbjct  234  KNLPRAIPLAIIVIAIVYIGVVAVAMMLDPKSLMTTKQVVAIAAIFKNEILRDVILVGAL  293

Query  310  ISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRF  369
            ISMFGINVA+SF APR+  A+A        L+++ + + P+ +F I+  LA+  P+A  +
Sbjct  294  ISMFGINVASSFNAPRILEAMARENQFSKSLTKRTKNNFPIRTFFISVLLAILIPMAFEY  353

Query  370  DNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSVGL  428
            + ++L  L+ + RF+ FI+VP+A+I   R +  E     ++N +TD V+P+++IV+ + L
Sbjct  354  NMVNLITLSAMVRFLGFIVVPLAVIQFYRGKTAEPVLNAQKNIWTDIVVPILSIVLVIFL  413

Query  429  AVSYDYRCIFLVRG------GPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPSTR  481
             V Y+++  F V        G N+++IA+++  FIV+P    L  + I R+  DR +++
Sbjct  414  LVEYNWKAQFGVVNASGQVTGINWYAIAMMIFGFIVLP----LIMFFISRK--DRKASK  466


>gi|343520981|ref|ZP_08757949.1| amino acid permease [Parvimonas sp. oral taxon 393 str. F0440]
 gi|343396187|gb|EGV08724.1| amino acid permease [Parvimonas sp. oral taxon 393 str. F0440]
Length=463

 Score =  287 bits (735),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 178/474 (38%), Positives = 286/474 (61%), Gaps = 24/474 (5%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             K+GF S+V+L INSIIG GIFL+PG V   AG  APM Y++A +F  ++AI FA+AA+Y
Sbjct  4    KKMGFWSIVLLTINSIIGTGIFLSPGSVAKSAGTQAPMIYLVAAVFTSMLAITFASAAKY  63

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            V  +GA+YAY+ AAFG  IG YVGVT  I ASIAWG + +F V T L++   D A     
Sbjct  64   VSKSGAAYAYSKAAFGNTIGQYVGVTRVIAASIAWGTMGTFVVRTTLKIFGLDSAN----  119

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIIT---TQ  188
               +  T+ FL  + +LL IN+FG + +   +  ST+GK  AL   I+ G+ I+      
Sbjct  120  --LTYVTIGFLVLMSILLLINIFGTKLLTLISDISTIGKVLALVVTIIAGVAILIYTGES  177

Query  189  HVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAP  248
            H++   +   A   TP     + E+   TF +   A I A YAFTGFES+A+ +++M+ P
Sbjct  178  HLSEL-SLLKAKDGTPL----IKEMTTTTFVT---AVIAAFYAFTGFESVASGSQDMEEP  229

Query  249  DRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGA  308
            ++NLP+AIP+AI  + AIY   + V M +    +  S + V LA+   N     ++V+GA
Sbjct  230  EKNLPKAIPLAIGIIAAIYFGIVLVGMHVNPVALVQSKEVVVLASIFTNPILEKVVVLGA  289

Query  309  LISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALR  368
            L+SMFGINVAASF  PR+  A+A    +P   +++   D+P+ +F  TA  A+  PL+ R
Sbjct  290  LVSMFGINVAASFHTPRVLEAMAKEKQVPEIFAKRLSNDLPLPAFLFTAIFAIIIPLSFR  349

Query  369  FDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSVG  427
            +D+  +  ++ I+RFVQF+IVP+A++     ++ E     +++  TD ++PL+A+++S+ 
Sbjct  350  YDSTGIAIISSISRFVQFLIVPLAVVIFYFGKSKETVLDTKKSMVTDVIIPLIALLLSIL  409

Query  428  LAVSYDYRCIFLVRGG-----PNYFSIALIVITFIVVPAMAYLHYYRIIRRVGD  476
            L V ++++  F V+        N  +I  +V+ ++V+P + ++ Y +  +++ +
Sbjct  410  LLVKFNWKGQFSVKDSTGELVTNVKAIISMVVGYVVLPIIMFI-YTKTKKKLSN  462


>gi|268320179|ref|YP_003293835.1| hypothetical protein FI9785_1716 [Lactobacillus johnsonii FI9785]
 gi|262398554|emb|CAX67568.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus 
johnsonii FI9785]
Length=466

 Score =  286 bits (733),  Expect = 6e-75, Method: Compositional matrix adjust.
 Identities = 175/477 (37%), Positives = 284/477 (60%), Gaps = 24/477 (5%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L INSIIG+GIFLTPG V+  AG  A + Y +A IFA ++AI FA AA+Y
Sbjct  7    SKLGFWSIVLLAINSIIGSGIFLTPGNVVQQAGSKALIVYFIAAIFASILAISFAAAAKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            V  +GA+YAY+ AAFG  +G Y+G+    +AS+AWGV+A   + + + +        +  
Sbjct  67   VTKSGAAYAYSKAAFGNNVGFYMGILRYFSASVAWGVMAVGVIKSTISIF-----GGNPN  121

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVN  191
            +  SV T+ FL  + V+  INLFG + +K+    +T+GK  AL   IV G+ ++     +
Sbjct  122  ETMSV-TIGFLILMAVITIINLFGQKVVKYVMNLATIGKLAALVLIIVAGVVLLIVSGAS  180

Query  192  NYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRN  251
            +  +     +       G   +   T +   +A + A YAFTGFES+A+ +++M  P +N
Sbjct  181  SNLSQVDQITQN-----GQKIVPTLTTTGFVMAIVSAFYAFTGFESVASGSDDMKNPAKN  235

Query  252  LPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALIS  311
            LPRAIP+AI  +  IY+  + VAM+L    + A+   V +AA   N   R +I+VGAL+S
Sbjct  236  LPRAIPLAIIVIAVIYIGVVAVAMMLDPKALMATKQVVAIAAIFKNEILRDVILVGALVS  295

Query  312  MFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDN  371
            MFGINVA+SF APR+  A+A        L+++ + + P+ +F I+  LA+  P+A  ++ 
Sbjct  296  MFGINVASSFNAPRILEAMARENQFSKALTKRTKNNFPIRTFFISVLLAILIPMAFEYNM  355

Query  372  LHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSVGLAV  430
            ++L  L+ + RF+ FI+VP+A+I   R +  E     ++N +TD V+P+++I + + L V
Sbjct  356  VNLITLSAMVRFLGFIVVPLAVIQFYRGKTAEPVLNAQKNVWTDIVVPILSIALVIFLLV  415

Query  431  SYDYRCIFLVRG------GPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPSTR  481
             Y+++  F V        G N+++IA+++  FI++P + +     II R  DR +++
Sbjct  416  EYNWKAQFGVVNAQGQVTGINWYAIAMMIFGFILLPLIMF-----IISR-KDRKASK  466


>gi|42519815|ref|NP_965745.1| hypothetical protein LJ0510 [Lactobacillus johnsonii NCC 533]
 gi|41584105|gb|AAS09711.1| hypothetical protein LJ_0510 [Lactobacillus johnsonii NCC 533]
Length=466

 Score =  286 bits (732),  Expect = 8e-75, Method: Compositional matrix adjust.
 Identities = 174/477 (37%), Positives = 283/477 (60%), Gaps = 24/477 (5%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L INSIIG+GIFLTPG V+  AG  A + Y +A IFA ++AI FA AA+Y
Sbjct  7    SKLGFWSIVLLAINSIIGSGIFLTPGSVVQQAGSKALIVYFIAAIFASILAISFAAAAKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            V  +GA+YAY+ AAFG  +G Y+G+    +AS+AWG++A   + + + +        +  
Sbjct  67   VTKSGAAYAYSKAAFGNNVGFYMGILRYFSASVAWGIMAVGVIKSTISIF-----GGNPN  121

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVN  191
            +  SV T+ FL  + V+  INLFG + +K+    +T+GK  AL   IV G+ ++     +
Sbjct  122  ETMSV-TIGFLILMAVITVINLFGQKVVKYVMNLATIGKLAALVLIIVAGVVLLIVSGAS  180

Query  192  NYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRN  251
            +  +     +       G   +   T +   +A + A YAFTGFES+A+ +++M  P +N
Sbjct  181  SNLSQVDQITQN-----GQKIVPTLTTTGFVMAIVSAFYAFTGFESVASGSDDMKNPAKN  235

Query  252  LPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALIS  311
            LPRAIP+AI  +  IY+  + VAM+L    +  +   V +AA   N   R +I+VGAL+S
Sbjct  236  LPRAIPLAIIVIAVIYIGVVAVAMMLDPKALMTTKQVVAIAAIFKNEILRDVILVGALVS  295

Query  312  MFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDN  371
            MFGINVA+SF APR+  A+A        L+++ + + P+ +F I+   A+  P+A  ++ 
Sbjct  296  MFGINVASSFNAPRILEAMARENQFSKALTKRTKNNFPIRTFFISVLFAILIPMAFEYNM  355

Query  372  LHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSVGLAV  430
            ++L  L+ + RF+ FI+VP+A+I   R +  E     +RN +TD V+P+++IV+ + L V
Sbjct  356  VNLITLSAMVRFLGFIVVPLAVIQFYRGKTAEPVLDAQRNVWTDIVVPILSIVLVIFLLV  415

Query  431  SYDYRCIFLVRG------GPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPSTR  481
             Y+++  F V        G N+++IA+++  FI++P + +     II R  DR +++
Sbjct  416  EYNWKAQFGVVNAQGQVTGINWYAIAMMIFGFILLPLIMF-----IISR-KDRKASK  466


>gi|256843919|ref|ZP_05549406.1| amino acid permease [Lactobacillus crispatus 125-2-CHN]
 gi|256613824|gb|EEU19026.1| amino acid permease [Lactobacillus crispatus 125-2-CHN]
Length=463

 Score =  286 bits (731),  Expect = 9e-75, Method: Compositional matrix adjust.
 Identities = 172/459 (38%), Positives = 280/459 (62%), Gaps = 24/459 (5%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L IN+IIG+GIFLTPG V+  AG  A + Y++A IFA ++AI FA A++Y
Sbjct  7    DKLGFWSIVLLAINAIIGSGIFLTPGSVVQQAGSKALVVYLIAAIFAAILAISFAAASKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV--AFPDKAWAD  129
            V  +GA+YAY+ AAFG++IG Y+GV    +AS+AWGV+A   + + + +    P+KA   
Sbjct  67   VTKSGAAYAYSKAAFGKKIGFYMGVLRYFSASVAWGVMAVGVIKSTISIFGGNPNKAIN-  125

Query  130  AEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGL-WIITTQ  188
                    T+ FL  + ++  INLFG + +K+    +T+GK  AL   I+ G+  +ITT 
Sbjct  126  -------VTIGFLILMAIITVINLFGQKVVKYVMNLATIGKLAALVLIIIAGVVLLITTG  178

Query  189  HVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAP  248
              +N             +  G   +   T ++  +A + A YAFTGFES+A+ +E+M  P
Sbjct  179  ASSNLG------QVDQLTQNGQKIVPTLTTTTFVMAIVSAFYAFTGFESVASGSEDMKNP  232

Query  249  DRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGA  308
            ++NLPRAIP+AI  +  +Y+  + VAM+L    +  +   V +AA   N   R +I+VGA
Sbjct  233  EKNLPRAIPLAILIIAVVYIGVVAVAMVLNPRALMTTKQVVAIAAIFNNEILRDVILVGA  292

Query  309  LISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALR  368
            L+SMFGINVA+SF APR+  A+A  G +   L+++ + + P+ +F I+  LA+  P+A  
Sbjct  293  LVSMFGINVASSFNAPRILEAMAREGQMSQALTKRTKNNFPIRTFFISVGLAILIPMAFE  352

Query  369  FDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEH-AAVRRNAFTDKVLPLVAIVVSVG  427
            ++ ++L  L+ + RF+ FI+VP+A+I   R +A E      ++  TD ++P+++ V+ + 
Sbjct  353  YNMVNLITLSAMVRFLGFIVVPLAVIQFYRGKAKEDILKANKSVMTDVIVPILSGVIVIF  412

Query  428  LAVSYDYRCIFLVRG------GPNYFSIALIVITFIVVP  460
            L V Y+++  F V        G N+++IA++V  F+++P
Sbjct  413  LLVEYNWKAQFGVVNAAGQVIGVNWYAIAMMVFGFVLLP  451


>gi|227878463|ref|ZP_03996403.1| APC family amino acid-polyamine-organocation transporter [Lactobacillus 
crispatus JV-V01]
 gi|256849518|ref|ZP_05554950.1| amino acid permease [Lactobacillus crispatus MV-1A-US]
 gi|293381380|ref|ZP_06627381.1| amino acid permease [Lactobacillus crispatus 214-1]
 7 more sequence titles
 Length=463

 Score =  285 bits (729),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 171/459 (38%), Positives = 280/459 (62%), Gaps = 24/459 (5%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L IN+IIG+GIFLTPG V+  AG  A + Y++A IFA ++AI FA A++Y
Sbjct  7    DKLGFWSIVLLAINAIIGSGIFLTPGSVVQQAGSKALVVYLIAAIFAAILAISFAAASKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV--AFPDKAWAD  129
            V  +GA+YAY+ AAFG++IG Y+GV    +AS+AWGV+A   + + + +    P+KA   
Sbjct  67   VTKSGAAYAYSKAAFGKKIGFYMGVLRYFSASVAWGVMAVGVIKSTISIFGGNPNKAIN-  125

Query  130  AEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGL-WIITTQ  188
                    T+ FL  + ++  INLFG + +K+    +T+GK  AL   I+ G+  +ITT 
Sbjct  126  -------VTIGFLILMAIITVINLFGQKVVKYVMNLATIGKLAALVLIIIAGVVLLITTG  178

Query  189  HVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAP  248
              +N             +  G   +   T ++  ++ + A YAFTGFES+A+ +E+M  P
Sbjct  179  ASSNLG------QVDQLTQNGQKIVPTLTTTTFVMSIVSAFYAFTGFESVASGSEDMKNP  232

Query  249  DRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGA  308
            ++NLPRAIP+AI  +  +Y+  + VAM+L    +  +   V +AA   N   R +I+VGA
Sbjct  233  EKNLPRAIPLAILIIAVVYIGVVAVAMVLNPRALMTTKQVVAIAAIFNNEILRDVILVGA  292

Query  309  LISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALR  368
            L+SMFGINVA+SF APR+  A+A  G +   L+++ + + P+ +F I+  LA+  P+A  
Sbjct  293  LVSMFGINVASSFNAPRILEAMAREGQMSQALTKRTKNNFPIRTFFISVGLAILIPMAFE  352

Query  369  FDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEH-AAVRRNAFTDKVLPLVAIVVSVG  427
            ++ ++L  L+ + RF+ FI+VP+A+I   R +A E      ++  TD ++P+++ V+ + 
Sbjct  353  YNMVNLITLSAMVRFLGFIVVPLAVIQFYRGKAKEDILKANKSVMTDVIVPILSGVIVIF  412

Query  428  LAVSYDYRCIFLVRG------GPNYFSIALIVITFIVVP  460
            L V Y+++  F V        G N+++IA++V  F+++P
Sbjct  413  LLVEYNWKAQFGVVNAAGQVIGVNWYAIAMMVFGFVLLP  451


>gi|262046187|ref|ZP_06019150.1| amino acid permease [Lactobacillus crispatus MV-3A-US]
 gi|260573517|gb|EEX30074.1| amino acid permease [Lactobacillus crispatus MV-3A-US]
Length=463

 Score =  284 bits (727),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 170/459 (38%), Positives = 280/459 (62%), Gaps = 24/459 (5%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L IN+IIG+GIFLTPG V+  AG  A + Y++A IFA ++AI FA A++Y
Sbjct  7    DKLGFWSIVLLAINAIIGSGIFLTPGSVVQQAGSKALVVYLIAAIFAAILAISFAAASKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV--AFPDKAWAD  129
            V  +GA+YAY+ AAFG++IG Y+GV    +AS+AWGV+A   + + + +    P+KA   
Sbjct  67   VTKSGAAYAYSKAAFGKKIGFYMGVLRYFSASVAWGVMAVGVIKSTISIFGGNPNKAIN-  125

Query  130  AEQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGL-WIITTQ  188
                    T+ FL  + ++  INLFG + +K+    +T+GK  AL   I+ G+  +ITT 
Sbjct  126  -------VTIGFLILMAIITVINLFGQKVVKYVMNLATIGKLAALVLIIIAGVVLLITTG  178

Query  189  HVNNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAP  248
              +N             +  G   +   T ++  ++ + A YAFTGFES+A+ +E+M  P
Sbjct  179  ASSNLG------QVDQLTQNGQKIVPTLTTTTFVMSIVSAFYAFTGFESVASGSEDMKNP  232

Query  249  DRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGA  308
            ++NLPRAIP+AI  +  +Y+  + VAM+L    +  +   V +AA   N   R +I+VGA
Sbjct  233  EKNLPRAIPLAILIIAVVYIGVVAVAMVLNPRALMTTKQVVAIAAIFNNEILRDVILVGA  292

Query  309  LISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALR  368
            L+SMFGINVA+SF APR+  A+A  G +   L+++ + + P+ +F I+  LA+  P+A  
Sbjct  293  LVSMFGINVASSFNAPRILEAMAREGQMSQALTKRTKNNFPIRTFFISVGLAILIPMAFE  352

Query  369  FDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEH-AAVRRNAFTDKVLPLVAIVVSVG  427
            ++ ++L  L+ + RF+ FI+VP+A+I   R +A E      ++  TD ++P+++ V+ + 
Sbjct  353  YNMVNLITLSAMVRFLGFIVVPLAVIQFYRGKAKEDILKANKSVMTDVIVPILSGVIVIF  412

Query  428  LAVSYDYRCIFLVRG------GPNYFSIALIVITFIVVP  460
            L V Y+++  F +        G N+++IA++V  F+++P
Sbjct  413  LLVEYNWKAQFGIVNAAGQVIGVNWYAIAMMVFGFVLLP  451


>gi|227889248|ref|ZP_04007053.1| APC family amino acid-polyamine-organocation transporter [Lactobacillus 
johnsonii ATCC 33200]
 gi|227850050|gb|EEJ60136.1| APC family amino acid-polyamine-organocation transporter [Lactobacillus 
johnsonii ATCC 33200]
Length=466

 Score =  284 bits (726),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 174/477 (37%), Positives = 283/477 (60%), Gaps = 24/477 (5%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L INSIIG+GIFLTPG V+  AG  A + Y +A IFA ++AI FA AA+Y
Sbjct  7    SKLGFWSIVLLAINSIIGSGIFLTPGNVVQQAGSKALIVYFIAAIFASILAISFAAAAKY  66

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            V  +GA+YAY+ AAFG  +G Y+G+    +AS+AWGV+A   + + + +        +  
Sbjct  67   VTKSGAAYAYSKAAFGNNVGFYMGILRYFSASVAWGVMAVGVIKSTISIF-----GGNPN  121

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVN  191
            +  SV T+ FL  + V+  INLFG + +K+    +T+GK  AL   IV G+ ++     +
Sbjct  122  ETTSV-TIGFLILMAVITIINLFGQKVVKYVMNLATIGKLAALVLIIVAGVVLLIVSGAS  180

Query  192  NYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRN  251
            +  +     +       G   +   T +   +A + A YAFTGFES+A+ +++M  P +N
Sbjct  181  SNLSQVDQITQN-----GQKIVPTLTTTGFVMAIVSAFYAFTGFESVASGSDDMKNPAKN  235

Query  252  LPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALIS  311
            LPRAIP+AI  +  IY+  + VAM+L    +  +   V +AA   N   R +I+VGAL+S
Sbjct  236  LPRAIPLAIIVIAVIYIGVVAVAMMLDPKALMTTKQVVAIAAIFKNEILRDVILVGALVS  295

Query  312  MFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDN  371
            MFGINVA+SF APR+  A+A        L+++ + + P+ +F I+  LA+  P+A  ++ 
Sbjct  296  MFGINVASSFNAPRILEAMARENQFSKALTKRTKNNFPIRTFFISVLLAILIPMAFEYNM  355

Query  372  LHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSVGLAV  430
            ++L  L+ + RF+ FI+VP+A+I   R +  E     ++N +TD V+P+++I + + L V
Sbjct  356  VNLITLSAMVRFLGFIVVPLAVIQFYRGKTAEPVLNAQKNVWTDIVVPILSIALVIFLLV  415

Query  431  SYDYRCIFLVRG------GPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPSTR  481
             Y+++  F V        G N+++IA+++  FI++P + +     II R  DR +++
Sbjct  416  EYNWKAQFGVVNAQGQVTGINWYAIAMMIFGFILLPLIMF-----IISR-KDRKASK  466


>gi|385826627|ref|YP_005862969.1| hypothetical protein [Lactobacillus johnsonii DPC 6026]
 gi|329668071|gb|AEB94019.1| hypothetical protein LJP_1703c [Lactobacillus johnsonii DPC 6026]
 gi|338761848|gb|EGP13117.1| amino acid permease domain containing protein [Lactobacillus 
johnsonii pf01]
Length=466

 Score =  284 bits (726),  Expect = 4e-74, Method: Compositional matrix adjust.
 Identities = 175/479 (37%), Positives = 282/479 (59%), Gaps = 33/479 (6%)

Query  13   KLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARYV  72
            KLGF S+V+L INSIIG+GIFLTPG V+  AG  A + Y +A IFA ++AI FA AA+YV
Sbjct  8    KLGFWSIVLLAINSIIGSGIFLTPGSVVQQAGSKALIVYFIAAIFASILAISFAAAAKYV  67

Query  73   RTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAEQ  132
              +GA+YAY+ AAFG  +G Y+G+    +AS+AWGV+A   + + + +        +  +
Sbjct  68   TKSGAAYAYSKAAFGNNVGFYMGILRYFSASVAWGVMAVGVIKSTISIF-----GGNPNE  122

Query  133  LFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVNN  192
              SV T+ FL  + V+  INLFG + +K+    +T+GK  AL   IV G+ ++       
Sbjct  123  TMSV-TIGFLILMAVITVINLFGQKVVKYVMNLATIGKLAALVLIIVAGVVLLIV-----  176

Query  193  YATAWSAYSATPYSLLGVAEIGKG-----TFSSMALATIVALYAFTGFESIANAAEEMDA  247
                 S  S+    +  + + G+      T +   +A + A YAFTGFES+A+ +++M  
Sbjct  177  -----SGASSNLSQVDQITQHGQKIVPTLTTTGFVMAIVSAFYAFTGFESVASGSDDMKN  231

Query  248  PDRNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVG  307
            P +NLPRAIP+AI  +  IY+  + VAM+L    +  +   V +AA   N   R +I+VG
Sbjct  232  PAKNLPRAIPLAIIVIAVIYIGVVAVAMMLDPKALMTTKQVVAIAAIFKNEILRDVILVG  291

Query  308  ALISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLAL  367
            AL+SMFGINVA+SF APR+  A+A        L+++ + + P+ +F I+  LA+  P+A 
Sbjct  292  ALVSMFGINVASSFNAPRILEAMARENQFSKALTKRTKNNFPIRTFFISVLLAILIPMAF  351

Query  368  RFDNLHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSV  426
             ++ ++L  L+ + RF+ FI+VP+A+I   R +  E     ++N +TD V+P+++I + +
Sbjct  352  EYNMVNLITLSAMVRFLGFIVVPLAVIQFYRGKTAEPVLDAQKNVWTDIVVPILSIALVI  411

Query  427  GLAVSYDYRCIFLVRG------GPNYFSIALIVITFIVVPAMAYLHYYRIIRRVGDRPS  479
             L V Y+++  F V        G N+++IA+++  FI++P + +     II R   + S
Sbjct  412  FLLVEYNWKAQFGVVNAQGQVTGINWYAIAMMIFGFILLPLIMF-----IISRKDHKAS  465


>gi|291458472|ref|ZP_06597862.1| amino acid permease [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419005|gb|EFE92724.1| amino acid permease [Oribacterium sp. oral taxon 078 str. F0262]
Length=463

 Score =  284 bits (726),  Expect = 4e-74, Method: Compositional matrix adjust.
 Identities = 180/463 (39%), Positives = 281/463 (61%), Gaps = 21/463 (4%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             K+GF S+V+L IN+IIG GIFL+PG V  L+G  AP  Y+ A +FA V+A+ FA+A+RY
Sbjct  6    KKIGFWSIVLLTINAIIGTGIFLSPGGVAKLSGSLAPFIYICAAVFAAVLALSFASASRY  65

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            V  NGA+YAY  AAFG   G+YVG+T  + ASIAWGV+A+  V T L++   D +  D  
Sbjct  66   VVKNGAAYAYCEAAFGENAGLYVGITRFVAASIAWGVMATGVVKTALQILGQDSS--DKG  123

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVN  191
            ++    TL FL  + +LL INL G R + + +  ST+GK  AL+  I+ G +I+ T HVN
Sbjct  124  KI----TLGFLLLMTILLVINLVGTRVLTFVSNLSTIGKLSALAITILAGFYILFTTHVN  179

Query  192  NYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRN  251
                     +     L  V  +  G F +   A I A YAFTGFES+A+ A +M+ P++N
Sbjct  180  RILEVDQLLNDAGEKL--VPPLTSGGFVT---AVIAAFYAFTGFESVASGASDMEEPEKN  234

Query  252  LPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALIS  311
            LP+A+P+AI  +  IY   + V+M++    + +S D V LAA   N   + II++GAL+S
Sbjct  235  LPKALPLAISIIALIYFGIVFVSMMIDPVAMVSSKDVVVLAAVFQNPLIKNIIILGALVS  294

Query  312  MFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDN  371
            MFGINVAASF  PR+  A+A+ G +P   +++   D+P+ +F +T  LA+  P+A  +D 
Sbjct  295  MFGINVAASFLTPRVIEAMANDGQVPKLFAKRTGRDLPLPAFLLTVLLAIVIPMAFNYDM  354

Query  372  LHLTGLAVIARFVQFIIVPIALIAL----ARSQAVEHAAVRRNAFTDKVLPLVAIVVSVG  427
              +  ++ I+RFVQF++VP+A+I       R   +++   ++N   D  + L+++V+++ 
Sbjct  355  RGIMIISSISRFVQFVLVPLAVITFYYGKNRKPIIDNP--KKNFILDVPVSLLSLVLTLL  412

Query  428  LAVSYDYRCIFLVR----GGPNYFSIALIVITFIVVPAMAYLH  466
            L   + +   F V       PN ++I  +++ +IV+P + YL+
Sbjct  413  LLAKFKWAAQFSVTVDGVTKPNLYAIFAMILGYIVLPILVYLY  455


>gi|375091548|ref|ZP_09737837.1| hypothetical protein HMPREF9709_00699 [Helcococcus kunzii ATCC 
51366]
 gi|374563070|gb|EHR34392.1| hypothetical protein HMPREF9709_00699 [Helcococcus kunzii ATCC 
51366]
Length=459

 Score =  281 bits (720),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 182/455 (40%), Positives = 272/455 (60%), Gaps = 17/455 (3%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+++L INSIIG GIFL+PG V+  AG  A + YVLA IFA V+A+ FA AA+Y
Sbjct  3    KKLGFYSIILLTINSIIGTGIFLSPGSVVAKAGDKALIVYVLAAIFAAVLAVTFAAAAKY  62

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            V + GA+YAYT  AFG   G YVG+T    ASIAWGV+ +  + T+L + F      D+ 
Sbjct  63   VSSGGAAYAYTKEAFGNDAGFYVGITRYFAASIAWGVMGTAVIKTVLNI-FK----MDSS  117

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVN  191
               ++ ++ FL  + VLL INL G +  +  N  ST+GK  AL   I+ G  II    VN
Sbjct  118  NTVNI-SIGFLVLMAVLLIINLLGTKVFEAINNLSTIGKVAALITTILVGFGIIIFSGVN  176

Query  192  NYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRN  251
            N  +  +    +  +L    +I     S+  +A I A YAFTGFES+A+ +E+M+ P++N
Sbjct  177  NIDSIKNLVDDSGKALGSNMDI-----STWVMAVIAAFYAFTGFESVASGSEDMEEPEKN  231

Query  252  LPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALIS  311
            LPRAIPIAI  +  IY+  + VA+++    I  S + V LA    N     II+VGALIS
Sbjct  232  LPRAIPIAIGIIAIIYIGIVGVAIMIDPKAIVESKEVVALADVFQNPIINRIIIVGALIS  291

Query  312  MFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDN  371
            MFGINVAASF  PR+  A++    +P+  +++     P+VSF +T ++A+  PLA +FD 
Sbjct  292  MFGINVAASFHTPRILEAMSRQKQIPSVFAKRTDKGFPIVSFLVTITIAIIIPLAFKFDM  351

Query  372  LHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSVGLAV  430
              +  ++ I+RFVQF+IVP+ALI     +       V+++   D ++P++A V ++ L  
Sbjct  352  TSIMIISSISRFVQFLIVPLALITFYYGKEKGKVNKVKKSTIVDLIIPIIAFVFTLLLLY  411

Query  431  SYDYRCIF--LVRGGP---NYFSIALIVITFIVVP  460
             ++++  F  L   G    N F+I  ++I ++++P
Sbjct  412  KFNWKGQFTTLNESGESVTNTFAIVSMIIGYVIMP  446


>gi|366086773|ref|ZP_09453258.1| amino acid permease [Lactobacillus zeae KCTC 3804]
Length=460

 Score =  281 bits (719),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 179/470 (39%), Positives = 277/470 (59%), Gaps = 25/470 (5%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             K+GF S+V+L INSIIG+GIFL+PG V+  +G  A + Y +A  FA ++A+ FA AA+Y
Sbjct  3    KKIGFWSIVLLAINSIIGSGIFLSPGAVVQSSGSKALILYGIAAFFAAILAVTFAAAAKY  62

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRV-AFPDKAWADA  130
            V  +GA+Y Y  AAFG  +G YVG+T  I   IAWGV+A+  V T+LR+  F      D 
Sbjct  63   VAHSGAAYIYAKAAFGEHVGFYVGITRYIATCIAWGVMATAVVKTVLRIFGF------DQ  116

Query  131  EQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHV  190
              L  V T++ +  +  LL IN FG +  +  N  ST+GK  AL  FI+ G+ +I T  V
Sbjct  117  NDLMLV-TISLILLMLSLLVINCFGPKFFELVNNLSTIGKLAALLVFIIFGIGVIATTGV  175

Query  191  NNYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDR  250
            N++A      SA              T S++ +  I A YAFTGFES+A+ A++MD P++
Sbjct  176  NHFAQIDRLTSAGT----------NATLSTLVMGVIAAFYAFTGFESVASGADDMDKPEK  225

Query  251  NLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALI  310
            NLP AIP+AI  +  +Y+  + +AM++    + A+ + V L A   N   + I++ GALI
Sbjct  226  NLPIAIPLAISVIAVVYIGVVWIAMMVNPQAMMATKEVVALVAVFNNPLIQNIVLYGALI  285

Query  311  SMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFD  370
            SM GINVAASF +PR+  A+A  G LP+ L+ +   + P+ +F +T +LA+  P+A R+D
Sbjct  286  SMLGINVAASFHSPRVLEAIAKQGQLPSWLAGRTAKNFPLPAFLLTIALAVLLPMAFRYD  345

Query  371  NLHLTGLAVIARFVQFIIVPIALIALARSQAVEH--AAVRRNAFTDKVLPLVAIVVSVGL  428
               +  L+ I+RFVQF+I+P+ ++   R +         R N  TD V P V+++++V L
Sbjct  346  MTSIIILSSISRFVQFLIIPLCVMKFFRGRGDRRLINPARPNVLTDMVCPAVSLILTVLL  405

Query  429  AVSYDYRCIFLV-----RGGPNYFSIALIVITFIVVPAMAYLHYYRIIRR  473
             + +D+   F +     +  PNYF+I  +++ +IV+     L  Y+  ++
Sbjct  406  LIKFDWIGQFTILDANNQHAPNYFAIVAMILGYIVILFGMMLFNYQTKKK  455


>gi|373106898|ref|ZP_09521198.1| hypothetical protein HMPREF9623_00862 [Stomatobaculum longum]
 gi|371651837|gb|EHO17263.1| hypothetical protein HMPREF9623_00862 [Stomatobaculum longum]
Length=461

 Score =  281 bits (718),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 182/466 (40%), Positives = 274/466 (59%), Gaps = 21/466 (4%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L IN++IG GIFL+PG V    G  AP  Y  A +FA  +A+ FA+A+RY
Sbjct  6    QKLGFWSIVLLTINAVIGTGIFLSPGSVAKQVGSIAPEIYFCAALFAACLAVTFASASRY  65

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            V  +GA+YAYT AAFG   G+YVG T  + ASIAWGV+A+  V T L++        D  
Sbjct  66   VVKSGAAYAYTEAAFGENAGLYVGATRFVAASIAWGVMATGVVKTALQIL-----RLDTS  120

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVN  191
            ++ +V TL FL  + +LL IN  G R  ++ +  STVGK  AL   +V GL++I T  VN
Sbjct  121  KISNV-TLGFLCLMVILLIINFCGMRVFRFVSNLSTVGKLGALVLTVVAGLFLILTTGVN  179

Query  192  NYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRN  251
              A      +     L  +  +  G F +   A I A YAFTGFES+A+ + +M+ P++N
Sbjct  180  RLAEVELLTNDAGEKL--IPALTTGGFVT---AVISAFYAFTGFESVASGSGDMENPEKN  234

Query  252  LPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALIS  311
            LPRA+P+AI  +  IY   + VAM +    +  S D V LAA   N   + +IV GAL+S
Sbjct  235  LPRALPLAIGIIALIYCGIVFVAMRIDPVSLVTSKDVVVLAAVFPNPLLKGLIVGGALVS  294

Query  312  MFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDN  371
            MFGINVAASF  PR+  A+A  G++P   +++ +  VP+ +F +T +LA+  P+A R+D 
Sbjct  295  MFGINVAASFLTPRVLEAMASDGLVPPIFAKRTESGVPIYAFLLTVALAIIIPMAFRYDM  354

Query  372  LHLTGLAVIARFVQFIIVPIALIAL----ARSQAVEHAAVRRNAFTDKVLPLVAIVVSVG  427
              +  ++ I+RFVQF++VP+A+I       R + + +   +RN   D    L+++ ++V 
Sbjct  355  RGIMIISSISRFVQFVLVPLAVITFYYGKNRGEVIPNP--KRNFVLDVPFSLLSLGLTVF  412

Query  428  LAVSYDYRCIFLVRGG----PNYFSIALIVITFIVVPAMAYLHYYR  469
            L   + +   F ++      PNY++I  + I ++V+P   YL+  R
Sbjct  413  LLAKFKWAAQFSLQVDGKTVPNYYAIVAMFIGYVVLPVGVYLYRAR  458


>gi|377556597|ref|ZP_09786297.1| Amino acid transport protein [Lactobacillus gastricus PS3]
 gi|376168301|gb|EHS87089.1| Amino acid transport protein [Lactobacillus gastricus PS3]
Length=455

 Score =  278 bits (712),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 167/454 (37%), Positives = 275/454 (61%), Gaps = 20/454 (4%)

Query  11   IHKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAAR  70
            I KLGF S+V+  INSIIG+GIFLTPG V+ + G  AP+AY+ A + A V+AI FA+AA+
Sbjct  6    IKKLGFWSIVLFAINSIIGSGIFLTPGSVVSMVGAKAPLAYLGAAVIAIVLAISFASAAK  65

Query  71   YVRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADA  130
            YV  +G +YAY  A+FG R G Y+GV    +AS+AWGV+A   + + L +      +   
Sbjct  66   YVSKSGGAYAYAKASFGDRFGFYMGVVRYFSASVAWGVMAVSVIKSTLSI------FGGN  119

Query  131  EQLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHV  190
               F   ++ F+  + ++  +N  G     W N  ST+GK  +L   I+ G+ I+     
Sbjct  120  PNDFRSVSIGFVILMIIITIVNFLGEEFFTWVNNLSTIGKLTSLVILIIAGVSILLVTGQ  179

Query  191  NNYATAWSAYSATPYSLLGVAE-IGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPD  249
            NN++            L G    I   T SS  +A + A YAFTGFES+++ +E+M  P+
Sbjct  180  NNFSQI--------NRLTGNGGLIPSVTTSSFVMAMVAAFYAFTGFESVSSGSEDMIKPE  231

Query  250  RNLPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGAL  309
            +NLPRAIP+AI  +  IY+ T++VAM++    I  ++  V LAA   N   +TII++GAL
Sbjct  232  KNLPRAIPLAIIIISIIYIGTISVAMMINPVAIVKTNQVVALAAVFSNRILQTIILLGAL  291

Query  310  ISMFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRF  369
            +SMFGINVAASF +PR+  A+A+ G +P  ++++N+  +P+V++ IT +LA+  P++  +
Sbjct  292  VSMFGINVAASFNSPRILEAMANEGQMPHWIAKRNRKGIPIVAYIITVALAILIPMSFLY  351

Query  370  DNLHLTGLAVIARFVQFIIVPIALIAL---ARSQAVEHAAVRRNAFTDKVLPLVAIVVSV  426
            +   +  ++ + RF +FI++PI ++        Q + +A   +N +TD ++PL+ ++++ 
Sbjct  352  ETTLVILMSAMVRFFEFIVIPIGVVGYYYDKHQQPILNAP--KNWWTDVLIPLLGVLLTA  409

Query  427  GLAVSYDYRCIFLVRGGPNYFSIALIVITFIVVP  460
             L   YD+   F + G  N+++I+ ++  F+V+P
Sbjct  410  FLLFEYDWVGEFSIHGHLNWYAISGMIGGFVVLP  443


>gi|238855438|ref|ZP_04645748.1| amino acid transporter [Lactobacillus jensenii 269-3]
 gi|313472726|ref|ZP_07813214.1| amino acid permease [Lactobacillus jensenii 1153]
 gi|238831928|gb|EEQ24255.1| amino acid transporter [Lactobacillus jensenii 269-3]
 gi|313448848|gb|EEQ68304.2| amino acid permease [Lactobacillus jensenii 1153]
Length=469

 Score =  278 bits (712),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 165/459 (36%), Positives = 263/459 (58%), Gaps = 17/459 (3%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L INSIIG+GIFLTPG V+   G  A + Y++A  FA ++AI FA AA+Y
Sbjct  8    DKLGFWSIVLLAINSIIGSGIFLTPGSVVSRVGSKALLVYLIAASFAAILAITFAAAAKY  67

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            V  +GA+YAY+ AAFG  +G Y+GV    +AS+AWGV+A   + + + +   D       
Sbjct  68   VTKSGAAYAYSKAAFGENVGFYMGVLRYFSASVAWGVMAVAVIKSTISIFGGD------P  121

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVN  191
              F   ++ F+  + ++  INLFG   +K+    ST+GK  AL   I+ G +++ +   N
Sbjct  122  NSFQNVSIGFVVLMLLIWVINLFGQSTVKYIMNLSTIGKLLALGLVILAGAFLLLSTGEN  181

Query  192  NYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRN  251
            ++             + G   +   T SS  +A + A YAFTGFE+IA+ +E+M  P +N
Sbjct  182  HFG------EIDTLQVAGKNVVPAVTTSSFVMAIVSAFYAFTGFEAIASGSEDMKEPSKN  235

Query  252  LPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALIS  311
            LPRAIP+AI  +  +Y+  + VAM+L   ++  +   V +AA   +   R II+VGAL+S
Sbjct  236  LPRAIPLAILIIALVYIGVVAVAMVLNPRELLETKQVVAVAAIFSSPILRAIILVGALVS  295

Query  312  MFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDN  371
            MFGIN+A+SF APR+  A+A     P  L+++ + + P  +F IT  LA+  P+A  +  
Sbjct  296  MFGINIASSFHAPRILEAMARENQFPKWLAKRTKRNFPARTFLITLILAVLVPMAFHYST  355

Query  372  LHLTGLAVIARFVQFIIVPIALIALARSQAVEHA-AVRRNAFTDKVLPLVAIVVSVGLAV  430
             +L  L+   RF+ FI+VP+ +I     +  E      RN  TD + P+ +I++++ L  
Sbjct  356  DNLIILSATVRFLGFIVVPLGVIKFYLGRNGEPVLTTNRNKITDLIFPIFSILITLFLLY  415

Query  431  SYDYRCIFLVR----GGPNYFSIALIVITFIVVPAMAYL  465
             YD+   F V        N+F+I  ++   +++PA+ ++
Sbjct  416  KYDWAAEFSVTINGVTSLNWFAIGALIFGAVILPAILFV  454


>gi|256851625|ref|ZP_05557013.1| amino acid permease [Lactobacillus jensenii 27-2-CHN]
 gi|260661658|ref|ZP_05862570.1| amino acid permease [Lactobacillus jensenii 115-3-CHN]
 gi|297205232|ref|ZP_06922628.1| amino acid permease [Lactobacillus jensenii JV-V16]
 gi|256615583|gb|EEU20772.1| amino acid permease [Lactobacillus jensenii 27-2-CHN]
 gi|260547715|gb|EEX23693.1| amino acid permease [Lactobacillus jensenii 115-3-CHN]
 gi|297149810|gb|EFH30107.1| amino acid permease [Lactobacillus jensenii JV-V16]
Length=469

 Score =  278 bits (711),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 167/459 (37%), Positives = 263/459 (58%), Gaps = 17/459 (3%)

Query  12   HKLGFCSVVMLGINSIIGAGIFLTPGEVIGLAGPFAPMAYVLAGIFAGVVAIVFATAARY  71
             KLGF S+V+L INSIIG+GIFLTPG V+   G  A + Y++A  FA ++AI FA AA+Y
Sbjct  8    DKLGFWSIVLLAINSIIGSGIFLTPGSVVSRVGSKALLVYLIAASFAAILAITFAAAAKY  67

Query  72   VRTNGASYAYTTAAFGRRIGIYVGVTHAITASIAWGVLASFFVSTLLRVAFPDKAWADAE  131
            V  +GA+YAY+ AAFG  +G Y+GV    +AS+AWGV+A   + + + +   D       
Sbjct  68   VTKSGAAYAYSKAAFGENVGFYMGVLRYFSASVAWGVMAVAVIKSTISIFGGD------P  121

Query  132  QLFSVKTLTFLGFIGVLLAINLFGNRAIKWANGTSTVGKAFALSAFIVGGLWIITTQHVN  191
              F   ++ F+  + ++  INLFG   +K+    ST+GK  AL   I  G +++ +   N
Sbjct  122  NSFQNVSIGFVVLMLLIWIINLFGQSVVKYIMNLSTIGKLLALGLVIFVGAFLLLSTGEN  181

Query  192  NYATAWSAYSATPYSLLGVAEIGKGTFSSMALATIVALYAFTGFESIANAAEEMDAPDRN  251
            +++            + G   I   T SS  +A + A YAFTGFESIA+ +E+M  P +N
Sbjct  182  HFS------EIDTLQIAGKNVIPAVTTSSFVMAIVSAFYAFTGFESIASGSEDMKNPAKN  235

Query  252  LPRAIPIAIFSVGAIYLLTLTVAMLLGSNKIAASDDTVKLAAAIGNATFRTIIVVGALIS  311
            LPRAIP+AI  +  +Y+  + VAM+L   ++  +   V +AA   +   R II+VGAL+S
Sbjct  236  LPRAIPLAILIIALVYIGVVAVAMVLNPRELLETKQVVAVAAIFSSPVLRAIILVGALVS  295

Query  312  MFGINVAASFGAPRLWTALADSGVLPTRLSRKNQYDVPMVSFAITASLALAFPLALRFDN  371
            MFGIN+A+SF APR+  A+A     P  L+++ + + P  +F IT  LA+  P+A  +  
Sbjct  296  MFGINIASSFHAPRILEAMARENQFPKWLAKRTKRNFPARTFLITLILAVLVPMAFHYST  355

Query  372  LHLTGLAVIARFVQFIIVPIALIALARSQAVEH-AAVRRNAFTDKVLPLVAIVVSVGLAV  430
             +L  L+   RF+ FI+VP+ +I     + VE      +N  TD + P+ +I++++ L  
Sbjct  356  DNLIILSATVRFLGFIVVPLGVIRFYLGKNVEPILTANKNKITDLIFPIFSILITLFLLY  415

Query  431  SYDYRCIFLVR----GGPNYFSIALIVITFIVVPAMAYL  465
             YD+   F V        N+F+I  +    +++PA+ ++
Sbjct  416  KYDWAAEFSVTVNGVTSLNWFAIGALAFGAVILPAILFI  454



Lambda     K      H
   0.328    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 1388024903200




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Oct 14, 2012  4:13 PM
  Number of letters in database: 7,218,481,314
  Number of sequences in database:  21,062,489



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40