BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1982A Length=86 Score E Sequences producing significant alignments: (Bits) Value gi|332321847|sp|P0CW35.1|VPB36_MYCTU RecName: Full=Putative anti... 170 6e-41 gi|15841459|ref|NP_336496.1| hypothetical protein MT2035 [Mycoba... 169 2e-40 gi|240171115|ref|ZP_04749774.1| hypothetical protein MkanA1_1752... 108 3e-22 gi|240170937|ref|ZP_04749596.1| hypothetical protein MkanA1_1661... 107 7e-22 gi|108802461|ref|YP_642657.1| hypothetical protein Mmcs_5501 [My... 104 6e-21 gi|315446724|ref|YP_004079603.1| hypothetical protein Mspyr1_524... 73.9 8e-12 gi|145221512|ref|YP_001132190.1| hypothetical protein Mflv_0918 ... 72.4 2e-11 gi|302528100|ref|ZP_07280442.1| conserved hypothetical protein [... 65.5 2e-09 gi|291294622|ref|YP_003506020.1| Rv0623 family protein transcrip... 51.6 4e-05 gi|218295219|ref|ZP_03496055.1| conserved hypothetical protein [... 51.2 5e-05 gi|46198434|ref|YP_004101.1| hypothetical protein TTC0126 [Therm... 50.4 9e-05 gi|333966164|gb|AEG32929.1| Rv0623 family protein transcription ... 48.9 2e-04 gi|55980471|ref|YP_143768.1| hypothetical protein TTHA0502 [Ther... 47.8 6e-04 gi|92109699|ref|YP_571985.1| Rv0623-like transcription factor [N... 45.4 0.003 gi|320449625|ref|YP_004201721.1| hypothetical protein TSC_c05400... 45.1 0.004 gi|258650322|ref|YP_003199478.1| Rv0623 family protein transcrip... 43.9 0.007 gi|336116292|ref|YP_004571058.1| hypothetical protein MLP_06410 ... 43.5 0.010 gi|220919622|ref|YP_002494925.1| Rv0623 family protein transcrip... 43.1 0.014 gi|254558182|ref|YP_003065707.1| hypothetical protein p1METDI009... 42.0 0.029 gi|90422854|ref|YP_531224.1| transcription factor [Rhodopseudomo... 40.4 0.085 gi|87123253|ref|ZP_01079104.1| hypothetical protein RS9917_05320... 40.4 0.088 gi|298529280|ref|ZP_07016683.1| Rv0623 family protein transcript... 39.3 0.18 gi|46205000|ref|ZP_00209659.1| COG4423: Uncharacterized protein ... 39.3 0.20 gi|84495503|ref|ZP_00994622.1| hypothetical protein JNB_11894 [J... 39.3 0.20 gi|118468950|ref|YP_885673.1| ribbon-helix-helix transcription f... 38.5 0.38 gi|270208573|ref|YP_003329344.1| hypothetical protein pSmeSM11ap... 38.1 0.43 gi|296448612|ref|ZP_06890482.1| Rv0623 family protein transcript... 37.7 0.55 gi|297565155|ref|YP_003684127.1| Rv0623 family protein transcrip... 37.7 0.61 gi|318040913|ref|ZP_07972869.1| ribbon-helix-helix transcription... 37.4 0.69 gi|154243677|ref|YP_001409250.1| transcription factor [Xanthobac... 37.0 0.95 gi|170748288|ref|YP_001754548.1| transcription factor [Methyloba... 37.0 1.1 gi|163849462|ref|YP_001637505.1| transcription factor [Methyloba... 36.6 1.1 gi|15966633|ref|NP_386986.1| hypothetical protein SMc02988 [Sino... 36.2 1.9 gi|15966131|ref|NP_386484.1| hypothetical protein SMc02716 [Sino... 35.8 2.4 gi|170747561|ref|YP_001753821.1| transcription factor [Methyloba... 35.0 3.3 gi|254430858|ref|ZP_05044561.1| probable ribbon-helix-helix tran... 35.0 3.6 gi|115526059|ref|YP_782970.1| transcription factor [Rhodopseudom... 34.3 6.4 gi|153007975|ref|YP_001369190.1| transcription factor [Ochrobact... 33.9 7.4 gi|91975925|ref|YP_568584.1| Rv0623-like transcription factor [R... 33.9 7.8 gi|298294066|ref|YP_003696005.1| protein transcription factor [S... 33.9 8.1 >gi|332321847|sp|P0CW35.1|VPB36_MYCTU RecName: Full=Putative antitoxin VapB36 Length=87 Score = 170 bits (431), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEIW 60 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEIW Sbjct 2 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEIW 61 Query 61 PLLADRSPITKLEREQILGYDPATGV 86 PLLADRSPITKLEREQILGYDPATGV Sbjct 62 PLLADRSPITKLEREQILGYDPATGV 87 >gi|15841459|ref|NP_336496.1| hypothetical protein MT2035 [Mycobacterium tuberculosis CDC1551] gi|148661792|ref|YP_001283315.1| hypothetical protein MRA_1994 [Mycobacterium tuberculosis H37Ra] gi|167970494|ref|ZP_02552771.1| hypothetical protein MtubH3_21673 [Mycobacterium tuberculosis H37Ra] 59 more sequence titles Length=86 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 85/86 (99%), Positives = 86/86 (100%), Gaps = 0/86 (0%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEIW 60 +ALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEIW Sbjct 1 MALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEIW 60 Query 61 PLLADRSPITKLEREQILGYDPATGV 86 PLLADRSPITKLEREQILGYDPATGV Sbjct 61 PLLADRSPITKLEREQILGYDPATGV 86 >gi|240171115|ref|ZP_04749774.1| hypothetical protein MkanA1_17521 [Mycobacterium kansasii ATCC 12478] gi|296165341|ref|ZP_06847882.1| toxin-antitoxin system [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899232|gb|EFG78697.1| toxin-antitoxin system [Mycobacterium parascrofulaceum ATCC BAA-614] Length=87 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 56/87 (65%), Positives = 66/87 (76%), Gaps = 1/87 (1%) Query 1 VALNIKDPEVDRLAAELADRLH-TSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEI 59 +A N+KD EV R A ELA RLH S+ AIR+AL AQ+ +SR +R A+LLD+L+TEI Sbjct 1 MAFNVKDEEVIRFADELAARLHLPSRIDAIRYALRAQIEVTQSRTANRSAELLDVLKTEI 60 Query 60 WPLLADRSPITKLEREQILGYDPATGV 86 WPLL DRSPITK EREQ LGYD ATGV Sbjct 61 WPLLDDRSPITKTEREQALGYDTATGV 87 >gi|240170937|ref|ZP_04749596.1| hypothetical protein MkanA1_16619 [Mycobacterium kansasii ATCC 12478] Length=121 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 58/87 (67%), Positives = 66/87 (76%), Gaps = 1/87 (1%) Query 1 VALNIKDPEVDRLAAELADRLH-TSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEI 59 VA N+KD EV RLA ELA RLH S+ AIR+AL AQ+ +SR +R +LLD+LRTEI Sbjct 35 VAFNVKDEEVIRLADELAARLHHPSRIDAIRYALRAQIEITQSRTANRADELLDVLRTEI 94 Query 60 WPLLADRSPITKLEREQILGYDPATGV 86 WPLL DRSPITK EREQ LGYD ATGV Sbjct 95 WPLLHDRSPITKSEREQALGYDAATGV 121 >gi|108802461|ref|YP_642657.1| hypothetical protein Mmcs_5501 [Mycobacterium sp. MCS] gi|119855288|ref|YP_935891.1| hypothetical protein Mkms_5902 [Mycobacterium sp. KMS] gi|108772880|gb|ABG11601.1| hypothetical protein Mmcs_5501 [Mycobacterium sp. MCS] gi|119698005|gb|ABL95076.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=87 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 53/87 (61%), Positives = 65/87 (75%), Gaps = 1/87 (1%) Query 1 VALNIKDPEVDRLAAELADRLH-TSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEI 59 +A NIKD +V LA EL RLH S+ AIRHAL AQ+ ++R G+R +LLD+LR EI Sbjct 1 MAFNIKDEQVIALADELQRRLHLPSRIDAIRHALKAQIEVTQTRTGNRTDELLDVLRNEI 60 Query 60 WPLLADRSPITKLEREQILGYDPATGV 86 WPLL D +PITK +REQ+LGYDPATGV Sbjct 61 WPLLHDGTPITKAQREQMLGYDPATGV 87 >gi|315446724|ref|YP_004079603.1| hypothetical protein Mspyr1_52430 [Mycobacterium sp. Spyr1] gi|315265027|gb|ADU01769.1| hypothetical protein Mspyr1_52430 [Mycobacterium sp. Spyr1] Length=82 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 41/80 (52%), Positives = 55/80 (69%), Gaps = 1/80 (1%) Query 7 DPEVDRLAAELADRLH-TSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEIWPLLAD 65 D +VD LA ELA RLH ++ AI AL A LA + + +R +LL+++ +EIWPLL D Sbjct 2 DDDVDALADELARRLHLDGRSEAILFALRASLAAAGAESLNRRDRLLEVMNSEIWPLLDD 61 Query 66 RSPITKLEREQILGYDPATG 85 R PI+K ERE ILG +P+TG Sbjct 62 REPISKNERENILGLNPSTG 81 >gi|145221512|ref|YP_001132190.1| hypothetical protein Mflv_0918 [Mycobacterium gilvum PYR-GCK] gi|145213998|gb|ABP43402.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=86 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/81 (51%), Positives = 54/81 (67%), Gaps = 1/81 (1%) Query 7 DPEVDRLAAELADRLH-TSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEIWPLLAD 65 D +VD LA ELA+RLH ++ AI AL A LA + R +LL+++ +EIWPLL D Sbjct 6 DDDVDALADELANRLHLGGRSEAILFALRASLAAAGDDSLIRRDRLLEVMNSEIWPLLQD 65 Query 66 RSPITKLEREQILGYDPATGV 86 PI+K ERE ILG +P+TGV Sbjct 66 GEPISKAERENILGLNPSTGV 86 >gi|302528100|ref|ZP_07280442.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302436995|gb|EFL08811.1| conserved hypothetical protein [Streptomyces sp. AA4] Length=90 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/88 (43%), Positives = 54/88 (62%), Gaps = 5/88 (5%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFL--ESRAGDREAQLLDILRTE 58 +A+NIKDPE +RLAAE+A+ T+KT A+R +L L + RA + + LR E Sbjct 1 MAMNIKDPETERLAAEVAELTGTTKTGAVRDSLRIMRDRLVAQRRAEHNADEFVRFLREE 60 Query 59 IWPLLADRS---PITKLEREQILGYDPA 83 +WP ++ + I+K ERE+ILGY P Sbjct 61 VWPQVSPENRGKAISKAEREEILGYGPG 88 >gi|291294622|ref|YP_003506020.1| Rv0623 family protein transcription factor [Meiothermus ruber DSM 1279] gi|290469581|gb|ADD27000.1| Rv0623 family protein transcription factor [Meiothermus ruber DSM 1279] Length=88 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 48/85 (57%), Gaps = 3/85 (3%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEIW 60 +AL +K+PEV+RLA E+A +KT AIR AL + A L + +L+ L E+W Sbjct 1 MALTVKNPEVERLAEEVARLTGETKTEAIRKALLERKARLLYPQRPSKESVLEFLEREVW 60 Query 61 PLLADRS---PITKLEREQILGYDP 82 L S TK E+E+ILG+ P Sbjct 61 AKLPPESLGKAPTKAEQEEILGFGP 85 >gi|218295219|ref|ZP_03496055.1| conserved hypothetical protein [Thermus aquaticus Y51MC23] gi|218244422|gb|EED10947.1| conserved hypothetical protein [Thermus aquaticus Y51MC23] Length=86 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/84 (41%), Positives = 48/84 (58%), Gaps = 7/84 (8%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAG-DREAQLLDILRTEI 59 +AL +++ EV+RLA E+A +KT AIR AL +L L+ + G DR +L L E+ Sbjct 1 MALTVRNKEVERLAEEVARLAGETKTEAIRKALEMRLKLLKGKRGFDR---VLRFLEEEV 57 Query 60 WPLLADR---SPITKLEREQILGY 80 WP + I+K E E ILGY Sbjct 58 WPQIPPELLGKGISKEEEEAILGY 81 >gi|46198434|ref|YP_004101.1| hypothetical protein TTC0126 [Thermus thermophilus HB27] gi|46196056|gb|AAS80474.1| hypothetical protein TT_C0126 [Thermus thermophilus HB27] Length=86 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/84 (40%), Positives = 49/84 (59%), Gaps = 7/84 (8%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAG-DREAQLLDILRTEI 59 +AL I++ EV+RLA E+A +KT A+R AL +L L+ + G DR ++ L E+ Sbjct 1 MALTIRNKEVERLAEEVARLAGETKTEAVRKALEMRLRELQRKQGFDR---VIRFLEEEV 57 Query 60 WPLLADR---SPITKLEREQILGY 80 WP + I+K E E+ILGY Sbjct 58 WPQIPPELLGKGISKEEEEEILGY 81 >gi|333966164|gb|AEG32929.1| Rv0623 family protein transcription factor [Thermus thermophilus SG0.5JP17-16] Length=86 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/84 (40%), Positives = 49/84 (59%), Gaps = 7/84 (8%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLE-SRAGDREAQLLDILRTEI 59 +AL I++ EV+RLA E+A +KT A+R AL +L L+ R+ DR ++ L E+ Sbjct 1 MALTIRNKEVERLAEEVARLAGETKTEAVRKALEMRLRELQRKRSFDR---VIRFLEEEV 57 Query 60 WPLLADR---SPITKLEREQILGY 80 WP + I+K E E+ILGY Sbjct 58 WPQIPPELLGKGISKEEEEEILGY 81 >gi|55980471|ref|YP_143768.1| hypothetical protein TTHA0502 [Thermus thermophilus HB8] gi|55771884|dbj|BAD70325.1| conserved hypothetical protein [Thermus thermophilus HB8] Length=86 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/84 (39%), Positives = 49/84 (59%), Gaps = 7/84 (8%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLE-SRAGDREAQLLDILRTEI 59 +AL I++ EV+RLA E+A +KT A+R AL +L L+ R+ DR ++ L E+ Sbjct 1 MALTIRNKEVERLAEEVARLAGETKTEAVRKALEMRLRELQRKRSFDR---VIRFLEEEV 57 Query 60 WPLLADR---SPITKLEREQILGY 80 WP + ++K E E+ILGY Sbjct 58 WPQIPPELLGKGLSKEEEEEILGY 81 >gi|92109699|ref|YP_571985.1| Rv0623-like transcription factor [Nitrobacter hamburgensis X14] gi|91802781|gb|ABE65153.1| Rv0623-like transcription factor [Nitrobacter hamburgensis X14] Length=84 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/86 (40%), Positives = 48/86 (56%), Gaps = 13/86 (15%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDIL----- 55 +AL+IKDPE ++LA LA R + T A R A+ +L ES+A R+A LL+ + Sbjct 1 MALSIKDPETEKLARALAQRTGETITVATRRAIEERLKRTESQA--RKAALLEDMEAMQR 58 Query 56 RTEIWPLLADRSPITKLEREQILGYD 81 R P+L RSP + I+GYD Sbjct 59 RLNALPILDPRSP------DDIIGYD 78 >gi|320449625|ref|YP_004201721.1| hypothetical protein TSC_c05400 [Thermus scotoductus SA-01] gi|320149794|gb|ADW21172.1| conserved hypothetical protein [Thermus scotoductus SA-01] Length=86 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/86 (37%), Positives = 48/86 (56%), Gaps = 7/86 (8%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEIW 60 +A I+D +V+RL E+ S+ A+R AL +LA L+ R G + LL L +IW Sbjct 1 MAFTIRDKDVERLVEEVTRLTGESRAEAVRKALEMRLAELKPRQGLQ--NLLRTLEDKIW 58 Query 61 ----PLLADRSPITKLEREQILGYDP 82 P D+ P+++ E E++LGY P Sbjct 59 SKIPPEYLDK-PLSQEETERLLGYGP 83 >gi|258650322|ref|YP_003199478.1| Rv0623 family protein transcription factor [Nakamurella multipartita DSM 44233] gi|258553547|gb|ACV76489.1| Rv0623 family protein transcription factor [Nakamurella multipartita DSM 44233] Length=84 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/84 (42%), Positives = 45/84 (54%), Gaps = 9/84 (10%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQL-LD--ILRT 57 + LNIKDPE DRLA ELA S T A R A+ +L+ L +R + L LD I R Sbjct 1 MVLNIKDPETDRLARELAAEAGESLTVATRRAIEERLSRLRARKRANDPDLGLDEFIRRG 60 Query 58 EIWPLLADRSPITKLEREQILGYD 81 +L +RSP + I+GYD Sbjct 61 RERAVLDERSP------DDIIGYD 78 >gi|336116292|ref|YP_004571058.1| hypothetical protein MLP_06410 [Microlunatus phosphovorus NM-1] gi|334684070|dbj|BAK33655.1| hypothetical protein MLP_06410 [Microlunatus phosphovorus NM-1] Length=84 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 36/83 (44%), Positives = 44/83 (54%), Gaps = 9/83 (10%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESR--AGDREAQLLDIL-RT 57 +ALNIKDPE DRLA ELA S T A R A+ +L + +R AG L D++ R Sbjct 1 MALNIKDPETDRLARELAAATGESITVAARRAIEERLERVRARADAGSASVDLGDLIERA 60 Query 58 EIWPLLADRSPITKLEREQILGY 80 P L RS E+ILGY Sbjct 61 RSRPDLDVRSA------EEILGY 77 >gi|220919622|ref|YP_002494925.1| Rv0623 family protein transcription factor [Methylobacterium nodulans ORS 2060] gi|219952042|gb|ACL62433.1| Rv0623 family protein transcription factor [Methylobacterium nodulans ORS 2060] Length=84 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 36/86 (42%), Positives = 48/86 (56%), Gaps = 13/86 (15%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDIL----- 55 +AL+IKDPE +RLA LA+R + T A R AL +L + S A R+A LL+ L Sbjct 1 MALSIKDPETERLARTLAERTGETITVATRKALEERLRRVGSDA--RKAALLEDLAACRR 58 Query 56 RTEIWPLLADRSPITKLEREQILGYD 81 R P+L RS ++ILGYD Sbjct 59 RWSTLPVLDPRSA------DEILGYD 78 >gi|254558182|ref|YP_003065707.1| hypothetical protein p1METDI0099 [Methylobacterium extorquens DM4] gi|254265725|emb|CAX17088.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length=80 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 26/59 (45%), Positives = 35/59 (60%), Gaps = 8/59 (13%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEI 59 +AL +KDPEVD LA ELA HT+KT A+R AL ++ +RE LD++ I Sbjct 1 MALYVKDPEVDALAEELASLKHTTKTEAVRLALRGEI--------EREKDRLDLVAQSI 51 >gi|90422854|ref|YP_531224.1| transcription factor [Rhodopseudomonas palustris BisB18] gi|90104868|gb|ABD86905.1| Rv0623-like transcription factor [Rhodopseudomonas palustris BisB18] Length=84 Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust. Identities = 33/86 (39%), Positives = 47/86 (55%), Gaps = 13/86 (15%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFL--ESRAGDREAQLLDILRTE 58 +AL+IKDPE +RLA LA + T A + A+ +L+ L SR ++ DI R Sbjct 1 MALSIKDPETERLARTLARLTGENITTATKRAIEQRLSRLAGPSRKSALLQEMADIRRR- 59 Query 59 IW---PLLADRSPITKLEREQILGYD 81 W P++ DR+P E+ILGYD Sbjct 60 -WSELPVVDDRTP------EEILGYD 78 >gi|87123253|ref|ZP_01079104.1| hypothetical protein RS9917_05320 [Synechococcus sp. RS9917] gi|86168973|gb|EAQ70229.1| hypothetical protein RS9917_05320 [Synechococcus sp. RS9917] Length=87 Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust. Identities = 29/67 (44%), Positives = 38/67 (57%), Gaps = 8/67 (11%) Query 3 LNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLES-----RAGDREAQLLDIL-- 55 +NIKDP V +A ELA T+ T A+R AL A+LA + S A RE QL+++L Sbjct 1 MNIKDPAVHAMARELAAHKGTTVTDAVRQALKAELARVGSASTSQAAEQREQQLMELLPR 60 Query 56 -RTEIWP 61 R WP Sbjct 61 FRHLPWP 67 >gi|298529280|ref|ZP_07016683.1| Rv0623 family protein transcription factor [Desulfonatronospira thiodismutans ASO3-1] gi|298510716|gb|EFI34619.1| Rv0623 family protein transcription factor [Desulfonatronospira thiodismutans ASO3-1] Length=83 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 33/84 (40%), Positives = 47/84 (56%), Gaps = 9/84 (10%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFL--ESRAGDREAQLLDIL-RT 57 +AL+I++PE +RLA E+A R + T AI H+L +L L + +A R +L I R Sbjct 1 MALSIRNPEAERLAREVAARSGENITQAIIHSLEERLQRLGHQQQAAARLEELQAIAGRC 60 Query 58 EIWPLLADRSPITKLEREQILGYD 81 + P L RS E+ILGYD Sbjct 61 QALPDLDQRSE------EEILGYD 78 >gi|46205000|ref|ZP_00209659.1| COG4423: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length=79 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/43 (52%), Positives = 28/43 (66%), Gaps = 0/43 (0%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESR 43 + LNI+ EV+RLA +LA R SKT A+R AL +L ESR Sbjct 1 MPLNIRSEEVNRLAEKLASRTRVSKTEAVRIALVNELERQESR 43 >gi|84495503|ref|ZP_00994622.1| hypothetical protein JNB_11894 [Janibacter sp. HTCC2649] gi|84384996|gb|EAQ00876.1| hypothetical protein JNB_11894 [Janibacter sp. HTCC2649] Length=86 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 36/87 (42%), Positives = 46/87 (53%), Gaps = 13/87 (14%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFL--ESRA----GDREAQLLDI 54 +ALNIKDPE DRLA ELA S T A R A+ +L + + RA GD + I Sbjct 1 MALNIKDPETDRLARELAAATGESITVAARRAIEERLERIHHQQRAIRPVGDDAIDGI-I 59 Query 55 LRTEIWPLLADRSPITKLEREQILGYD 81 R P+L D P+ ++ILGYD Sbjct 60 ARGRARPVL-DARPV-----DEILGYD 80 >gi|118468950|ref|YP_885673.1| ribbon-helix-helix transcription factor, family protein [Mycobacterium smegmatis str. MC2 155] gi|118170237|gb|ABK71133.1| probable ribbon-helix-helix transcription factor, family protein [Mycobacterium smegmatis str. MC2 155] Length=84 Score = 38.5 bits (88), Expect = 0.38, Method: Compositional matrix adjust. Identities = 34/84 (41%), Positives = 41/84 (49%), Gaps = 9/84 (10%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGD---REAQLLDILRT 57 +AL+IK PE DRLA ELA R + T A+ AL +LA R RE R Sbjct 1 MALSIKHPEADRLARELAARTGETLTEAVVMALRERLARTVGRTQVVPLREELAAIRRRC 60 Query 58 EIWPLLADRSPITKLEREQILGYD 81 P+L DR+ E ILGYD Sbjct 61 AALPVLDDRTA------ESILGYD 78 >gi|270208573|ref|YP_003329344.1| hypothetical protein pSmeSM11ap046 [Sinorhizobium meliloti] gi|76880847|gb|ABA56017.1| conserved hypothetical protein [Sinorhizobium meliloti] Length=85 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 35/84 (42%), Positives = 44/84 (53%), Gaps = 8/84 (9%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREA---QLLDILRT 57 ++LNIK+P LA ELA R SKTAAI ALS +L R G E +LL LR Sbjct 1 MSLNIKNPATVALADELARRQGISKTAAIHQALSERL----HRMGHGEVSQDRLLGELRA 56 Query 58 EIWPLLADRSPITKLEREQILGYD 81 I +A + E+I+GYD Sbjct 57 -IRQRIARLPELDSRSDEEIIGYD 79 >gi|296448612|ref|ZP_06890482.1| Rv0623 family protein transcription factor [Methylosinus trichosporium OB3b] gi|296253884|gb|EFH01041.1| Rv0623 family protein transcription factor [Methylosinus trichosporium OB3b] Length=81 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 20/42 (48%), Positives = 30/42 (72%), Gaps = 0/42 (0%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLES 42 ++L+I+D EVDRLAA+LA ++KT A+R AL +L + S Sbjct 1 MSLDIRDDEVDRLAAQLAALTRSTKTEAVRDALRRELTRVRS 42 >gi|297565155|ref|YP_003684127.1| Rv0623 family protein transcription factor [Meiothermus silvanus DSM 9946] gi|296849604|gb|ADH62619.1| Rv0623 family protein transcription factor [Meiothermus silvanus DSM 9946] Length=84 Score = 37.7 bits (86), Expect = 0.61, Method: Compositional matrix adjust. Identities = 32/82 (40%), Positives = 43/82 (53%), Gaps = 1/82 (1%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEIW 60 +AL +K+ EV+ LA E+A +KT AIR AL + A L R + + LR Sbjct 1 MALTVKNLEVECLAEEVACLAGETKTEAIRKALLERKARLARPERPRSEVIEEFLRDMQD 60 Query 61 PLLADRSPITKLEREQILGYDP 82 L R P TK E E+ILG+ P Sbjct 61 LLPKGRRP-TKGEEEEILGFGP 81 >gi|318040913|ref|ZP_07972869.1| ribbon-helix-helix transcription factor, family protein [Synechococcus sp. CB0101] Length=89 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 34/89 (39%), Positives = 52/89 (59%), Gaps = 5/89 (5%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESR--AGD-REAQLLDILRT 57 +ALNI++PE DRLAA++A +KT A+ AL +L L+S+ AG R+ L+ L Sbjct 1 MALNIRNPEADRLAAQVACLSGETKTDAVILALKERLQRLQSQPEAGKVRQRSLIHRL-D 59 Query 58 EIWPLLADRSPITKLEREQILGYDPATGV 86 +I A R + ++I GYD A+G+ Sbjct 60 QIALRCAARPILDSSSADEICGYD-ASGL 87 >gi|154243677|ref|YP_001409250.1| transcription factor [Xanthobacter autotrophicus Py2] gi|154162799|gb|ABS70014.1| Rv0623 family protein transcription factor [Xanthobacter autotrophicus Py2] Length=85 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 33/82 (41%), Positives = 46/82 (57%), Gaps = 4/82 (4%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDR-EAQLLDILRTEI 59 ++LNIK+P LA ELA R +KTAAI ALS +L + GD +A+LL LR I Sbjct 1 MSLNIKNPATVALADELARRQGVTKTAAIHQALSERLHRMGY--GDTAQARLLGELRA-I 57 Query 60 WPLLADRSPITKLEREQILGYD 81 +A + E+I+G+D Sbjct 58 RERVARLPELDTRSDEEIVGFD 79 >gi|170748288|ref|YP_001754548.1| transcription factor [Methylobacterium radiotolerans JCM 2831] gi|170654810|gb|ACB23865.1| Rv0623 family protein transcription factor [Methylobacterium radiotolerans JCM 2831] Length=80 Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/54 (45%), Positives = 33/54 (62%), Gaps = 1/54 (1%) Query 3 LNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDILR 56 L +KDP+VD LA +L L TSKT A+R AL ++A +R D A+ D +R Sbjct 3 LYVKDPQVDALATQLMALLGTSKTDAVRRALQNEIARQTNRP-DLVARTADFVR 55 >gi|163849462|ref|YP_001637505.1| transcription factor [Methylobacterium extorquens PA1] gi|254558658|ref|YP_003065753.1| hypothetical protein METDI0005 [Methylobacterium extorquens DM4] gi|163661067|gb|ABY28434.1| Rv0623 family protein transcription factor [Methylobacterium extorquens PA1] gi|254265936|emb|CAX21685.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length=79 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/42 (48%), Positives = 28/42 (67%), Gaps = 0/42 (0%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLES 42 + LNI+ EV+RLA +LA + SKT A+R AL+ +L ES Sbjct 1 MPLNIRSEEVNRLAEKLASQARVSKTEAVRMALANELQRRES 42 >gi|15966633|ref|NP_386986.1| hypothetical protein SMc02988 [Sinorhizobium meliloti 1021] gi|334317636|ref|YP_004550255.1| protein transcription factor [Sinorhizobium meliloti AK83] gi|15075905|emb|CAC47459.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|333812937|gb|AEG05606.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti BL225C] gi|334096630|gb|AEG54641.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti AK83] gi|336034361|gb|AEH80293.1| hypothetical protein SM11_chr3049 [Sinorhizobium meliloti SM11] Length=79 Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 25/38 (66%), Gaps = 0/38 (0%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLA 38 + L IKDPEVDRLA EL +SK A++ AL ++A Sbjct 1 MPLYIKDPEVDRLAEELISLTKSSKVDAVKDALKHEIA 38 >gi|15966131|ref|NP_386484.1| hypothetical protein SMc02716 [Sinorhizobium meliloti 1021] gi|334317136|ref|YP_004549755.1| protein transcription factor [Sinorhizobium meliloti AK83] gi|7388541|sp|Q9X7L3.1|Y2378_RHIME RecName: Full=Uncharacterized protein R02378 gi|4539551|emb|CAB39978.1| hypothetical protein [Sinorhizobium meliloti] gi|15075401|emb|CAC46957.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|333812440|gb|AEG05109.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti BL225C] gi|334096130|gb|AEG54141.1| Rv0623 family protein transcription factor [Sinorhizobium meliloti AK83] gi|336032147|gb|AEH78079.1| conserved hypothetical protein [Sinorhizobium meliloti SM11] Length=83 Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust. Identities = 23/49 (47%), Positives = 31/49 (64%), Gaps = 1/49 (2%) Query 1 VALNIKDPEVDRLAAELADRLHT-SKTAAIRHALSAQLAFLESRAGDRE 48 +AL IKDP VDR+A +L +RL +KT A+R AL +L +E RE Sbjct 1 MALYIKDPTVDRMAEKLQERLGVRTKTDAVRIALQHELDRVEDEIPLRE 49 >gi|170747561|ref|YP_001753821.1| transcription factor [Methylobacterium radiotolerans JCM 2831] gi|170654083|gb|ACB23138.1| Rv0623 family protein transcription factor [Methylobacterium radiotolerans JCM 2831] Length=78 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 27/40 (68%), Gaps = 0/40 (0%) Query 3 LNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLES 42 LNI+ EV++LA +LA R SKT A+R AL+ +L ES Sbjct 3 LNIRSEEVNQLAEKLASRAGVSKTEAVRLALANELERRES 42 >gi|254430858|ref|ZP_05044561.1| probable ribbon-helix-helix transcription factor, Rv0623 family [Cyanobium sp. PCC 7001] gi|197625311|gb|EDY37870.1| probable ribbon-helix-helix transcription factor, Rv0623 family [Cyanobium sp. PCC 7001] Length=89 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/46 (46%), Positives = 29/46 (64%), Gaps = 0/46 (0%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGD 46 +ALNI+ PE +RLAAELA +KT A+ AL +L L+ + D Sbjct 1 MALNIRHPEANRLAAELAALSGQTKTDAVIQALKERLETLKRQQED 46 >gi|115526059|ref|YP_782970.1| transcription factor [Rhodopseudomonas palustris BisA53] gi|115520006|gb|ABJ07990.1| Rv0623 family protein transcription factor [Rhodopseudomonas palustris BisA53] Length=86 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 31/80 (39%), Positives = 38/80 (48%), Gaps = 6/80 (7%) Query 3 LNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAF-LESRAGDREAQLLDILRTEIWP 61 LNIK+ E RLA ELA S T A+ AL QLA R D+ A+ L + Sbjct 6 LNIKNDEAHRLATELAQLTGESLTGAVTAALREQLARERRRRQSDKVAERLMKIGNHYAS 65 Query 62 LLADRSPITKLEREQILGYD 81 L P T ++ILGYD Sbjct 66 L-----PDTGRSPDEILGYD 80 >gi|153007975|ref|YP_001369190.1| transcription factor [Ochrobactrum anthropi ATCC 49188] gi|151559863|gb|ABS13361.1| Rv0623 family protein transcription factor [Ochrobactrum anthropi ATCC 49188] Length=90 Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust. Identities = 29/83 (35%), Positives = 44/83 (54%), Gaps = 7/83 (8%) Query 1 VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEIW 60 +AL+IK E DRLA EL+ + T AI A+ +L L + +REAQ + R + + Sbjct 1 MALSIKTDEADRLARELSRLTGETMTDAITQAMRERLDRLRA---EREAQRDYVARMKAF 57 Query 61 ----PLLADRSPITKLEREQILG 79 DR P+TK E ++ +G Sbjct 58 VRERASRYDRRPVTKQEWDEAVG 80 >gi|91975925|ref|YP_568584.1| Rv0623-like transcription factor [Rhodopseudomonas palustris BisB5] gi|91682381|gb|ABE38683.1| Rv0623-like transcription factor [Rhodopseudomonas palustris BisB5] Length=83 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 29/67 (44%), Positives = 33/67 (50%), Gaps = 12/67 (17%) Query 3 LNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESR------------AGDREAQ 50 LNIK+ E RLA+ELA+ S TAA+ AL QLA R GDR A Sbjct 3 LNIKNDEAHRLASELAELTGESLTAAVTAALREQLARERRRRQTDKIAERLLKIGDRYAA 62 Query 51 LLDILRT 57 L D RT Sbjct 63 LPDTGRT 69 >gi|298294066|ref|YP_003696005.1| protein transcription factor [Starkeya novella DSM 506] gi|296930577|gb|ADH91386.1| Rv0623 family protein transcription factor [Starkeya novella DSM 506] Length=81 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 23/40 (58%), Positives = 28/40 (70%), Gaps = 3/40 (7%) Query 1 VALNIKDPEVDRLAAELADRLHT--SKTAAIRHALSAQLA 38 +AL I+DPEVD LA E+ RL +KT A+R AL AQLA Sbjct 1 MALFIRDPEVDALAEEVR-RLTKARTKTEAVRSALKAQLA 39 Lambda K H 0.318 0.134 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131009627400 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40