BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1982c

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609119|ref|NP_216498.1|  hypothetical protein Rv1982c [Mycob...   283    9e-75
gi|340626995|ref|YP_004745447.1|  hypothetical protein MCAN_20021...   280    7e-74
gi|15841458|ref|NP_336495.1|  hypothetical protein MT2034 [Mycoba...   280    7e-74
gi|108802462|ref|YP_642658.1|  PilT protein-like protein [Mycobac...   199    1e-49
gi|240171116|ref|ZP_04749775.1|  PilT domain-containing protein [...   194    3e-48
gi|240170938|ref|ZP_04749597.1|  PilT domain-containing protein [...   178    2e-43
gi|302528099|ref|ZP_07280441.1|  predicted protein [Streptomyces ...   116    1e-24
gi|318040914|ref|ZP_07972870.1|  hypothetical protein SCB01_04369...   103    7e-21
gi|254424570|ref|ZP_05038288.1|  hypothetical protein S7335_4730 ...   102    2e-20
gi|337266992|ref|YP_004611047.1|  PilT protein domain-containing ...   100    9e-20
gi|92109698|ref|YP_571984.1|  PilT protein-like [Nitrobacter hamb...  99.4    2e-19
gi|318040907|ref|ZP_07972863.1|  hypothetical protein SCB01_04334...  97.4    7e-19
gi|291294623|ref|YP_003506021.1|  PilT domain-containing protein ...  95.1    3e-18
gi|293980661|ref|YP_003543419.1|  hypothetical protein SJA_P2-001...  94.4    5e-18
gi|320449624|ref|YP_004201720.1|  PilT protein domain-containing ...  93.6    9e-18
gi|334321234|ref|YP_004557774.1|  PilT protein domain-containing ...  93.6    1e-17
gi|334315170|ref|YP_004547789.1|  PilT protein domain-containing ...  92.4    2e-17
gi|227819246|ref|YP_002823217.1|  hypothetical protein NGR_b10110...  92.4    2e-17
gi|270208572|ref|YP_003329343.1|  hypothetical protein pSmeSM11ap...  92.4    2e-17
gi|167647416|ref|YP_001685079.1|  PilT domain-containing protein ...  92.0    3e-17
gi|150377533|ref|YP_001314128.1|  PilT domain-containing protein ...  91.3    5e-17
gi|284041784|ref|YP_003392124.1|  PilT protein domain protein [Co...  90.5    7e-17
gi|116254471|ref|YP_770307.1|  hypothetical protein pRL100005 [Rh...  89.7    1e-16
gi|154243676|ref|YP_001409249.1|  PilT domain-containing protein ...  89.4    2e-16
gi|241554096|ref|YP_002979309.1|  PilT protein domain protein [Rh...  89.0    2e-16
gi|15964557|ref|NP_384910.1|  hypothetical protein SMc00900 [Sino...  88.6    3e-16
gi|218295220|ref|ZP_03496056.1|  PilT protein domain protein [The...  88.2    4e-16
gi|120402183|ref|YP_952012.1|  PilT domain-containing protein [My...  88.2    4e-16
gi|339499339|ref|YP_004697374.1|  PilT protein domain-containing ...  87.8    5e-16
gi|299138782|ref|ZP_07031960.1|  PilT protein domain protein [Aci...  87.8    6e-16
gi|15609896|ref|NP_217275.1|  hypothetical protein Rv2759c [Mycob...  87.0    8e-16
gi|192292981|ref|YP_001993586.1|  PilT protein domain-containing ...  87.0    9e-16
gi|39937202|ref|NP_949478.1|  PilT protein N-terminal [Rhodopseud...  86.7    1e-15
gi|153869463|ref|ZP_01999056.1|  conserved hypothetical protein [...  86.7    1e-15
gi|55980470|ref|YP_143767.1|  hypothetical protein TTHA0501 [Ther...  85.5    2e-15
gi|336116293|ref|YP_004571059.1|  hypothetical protein MLP_06420 ...  85.5    3e-15
gi|220919621|ref|YP_002494924.1|  PilT protein domain protein [Me...  85.5    3e-15
gi|222081455|ref|YP_002540818.1|  hypothetical protein Arad_7798 ...  85.1    3e-15
gi|153012021|ref|YP_001373233.1|  PilT domain-containing protein ...  85.1    3e-15
gi|84495502|ref|ZP_00994621.1|  hypothetical protein JNB_11889 [J...  84.3    6e-15
gi|316935649|ref|YP_004110631.1|  PilT domain-containing protein ...  82.8    2e-14
gi|298529281|ref|ZP_07016684.1|  PilT protein domain protein [Des...  82.8    2e-14
gi|46198433|ref|YP_004100.1|  hypothetical protein TTC0125 [Therm...  82.8    2e-14
gi|90422855|ref|YP_531225.1|  PilT protein-like protein [Rhodopse...  81.6    4e-14
gi|258650323|ref|YP_003199479.1|  PilT protein domain-containing ...  81.6    4e-14
gi|316934115|ref|YP_004109097.1|  PilT domain-containing protein ...  81.6    4e-14
gi|153012093|ref|YP_001373304.1|  PilT domain-containing protein ...  81.3    5e-14
gi|15607764|ref|NP_215138.1|  hypothetical protein Rv0624 [Mycoba...  80.9    7e-14
gi|296444600|ref|ZP_06886564.1|  PilT protein domain protein [Met...  80.5    9e-14
gi|118472447|ref|YP_885674.1|  PilT domain-containing protein [My...  80.1    1e-13


>gi|15609119|ref|NP_216498.1| hypothetical protein Rv1982c [Mycobacterium tuberculosis H37Rv]
 gi|31793161|ref|NP_855654.1| hypothetical protein Mb2004c [Mycobacterium bovis AF2122/97]
 gi|148661791|ref|YP_001283314.1| hypothetical protein MRA_1993 [Mycobacterium tuberculosis H37Ra]
 71 more sequence titles
 Length=139

 Score =  283 bits (723),  Expect = 9e-75, Method: Compositional matrix adjust.
 Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER
Sbjct  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
            LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND
Sbjct  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120

Query  121  FPQTDLEFRGVVGYWPGVA  139
            FPQTDLEFRGVVGYWPGVA
Sbjct  121  FPQTDLEFRGVVGYWPGVA  139


>gi|340626995|ref|YP_004745447.1| hypothetical protein MCAN_20021 [Mycobacterium canettii CIPT 
140010059]
 gi|340005185|emb|CCC44334.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=139

 Score =  280 bits (715),  Expect = 7e-74, Method: Compositional matrix adjust.
 Identities = 138/139 (99%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            MIVDTSAVVALVQGERPHATLVAAALAGA SPVMSAPTVAECLIVLTARHGPVARTIFER
Sbjct  1    MIVDTSAVVALVQGERPHATLVAAALAGADSPVMSAPTVAECLIVLTARHGPVARTIFER  60

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
            LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND
Sbjct  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120

Query  121  FPQTDLEFRGVVGYWPGVA  139
            FPQTDLEFRGVVGYWPGVA
Sbjct  121  FPQTDLEFRGVVGYWPGVA  139


>gi|15841458|ref|NP_336495.1| hypothetical protein MT2034 [Mycobacterium tuberculosis CDC1551]
 gi|254232152|ref|ZP_04925479.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254364799|ref|ZP_04980845.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|13881698|gb|AAK46309.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|124601211|gb|EAY60221.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134150313|gb|EBA42358.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|323719469|gb|EGB28596.1| toxin protein [Mycobacterium tuberculosis CDC1551A]
Length=139

 Score =  280 bits (715),  Expect = 7e-74, Method: Compositional matrix adjust.
 Identities = 138/139 (99%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER
Sbjct  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
            LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND
Sbjct  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120

Query  121  FPQTDLEFRGVVGYWPGVA  139
            FPQTD EFRGVVGYWPGVA
Sbjct  121  FPQTDHEFRGVVGYWPGVA  139


>gi|108802462|ref|YP_642658.1| PilT protein-like protein [Mycobacterium sp. MCS]
 gi|119855289|ref|YP_935892.1| PilT domain-containing protein [Mycobacterium sp. KMS]
 gi|108772881|gb|ABG11602.1| PilT protein-like protein [Mycobacterium sp. MCS]
 gi|119698006|gb|ABL95077.1| PilT protein domain protein [Mycobacterium sp. KMS]
Length=139

 Score =  199 bits (506),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 93/136 (69%), Positives = 112/136 (83%), Gaps = 0/136 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            MI+DTSAV+AL+Q E PHA  VAAALAG  +PVM+AP V ECLIVLT+RHGP+ART+F+R
Sbjct  1    MIIDTSAVLALIQREDPHAEHVAAALAGDRNPVMAAPNVVECLIVLTSRHGPIARTVFDR  60

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
            L SEI L V+ FT EHAAA  RA+ +YG+GRH AAL+FGD M YA A+L H+PL+AVG D
Sbjct  61   LSSEINLGVAQFTTEHAAAAHRAYSQYGRGRHPAALSFGDTMAYAAAKLAHEPLIAVGGD  120

Query  121  FPQTDLEFRGVVGYWP  136
            F +TDLEF GV+GYWP
Sbjct  121  FARTDLEFDGVIGYWP  136


>gi|240171116|ref|ZP_04749775.1| PilT domain-containing protein [Mycobacterium kansasii ATCC 12478]
 gi|296165342|ref|ZP_06847883.1| PilT protein family protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295899233|gb|EFG78698.1| PilT protein family protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=140

 Score =  194 bits (494),  Expect = 3e-48, Method: Compositional matrix adjust.
 Identities = 89/136 (66%), Positives = 106/136 (78%), Gaps = 0/136 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            +I+D+SA+VAL+QGE P+   +AAA+A   SPVMS    AECLIVLT RHG  ART+F+R
Sbjct  3    LIIDSSAIVALIQGEDPYTEQIAAAIAADPSPVMSTANAAECLIVLTNRHGATARTVFDR  62

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
            LRSEI L    FT EHA A  RA+L YGKGRH AALN+GD M YATA+L H+PL+A+GND
Sbjct  63   LRSEINLGFQPFTLEHAIAAHRAYLHYGKGRHPAALNYGDTMAYATAKLAHEPLIAIGND  122

Query  121  FPQTDLEFRGVVGYWP  136
            F QTDLEF GV+GYWP
Sbjct  123  FTQTDLEFNGVIGYWP  138


>gi|240170938|ref|ZP_04749597.1| PilT domain-containing protein [Mycobacterium kansasii ATCC 12478]
Length=140

 Score =  178 bits (452),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 85/136 (63%), Positives = 101/136 (75%), Gaps = 0/136 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            MI+D+SA VAL+QGE P+   +AAAL G  SPVMS    AECLIVLT+RHG +ART+F+R
Sbjct  1    MILDSSAFVALIQGEAPYTEQIAAALTGDRSPVMSTANAAECLIVLTSRHGFIARTVFDR  60

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
            LR EI L    F  E A A   A+LRYG+GRH A LN GD M YATA+L H+PL+A+GND
Sbjct  61   LRFEINLGFQPFNFELAMAAHLAYLRYGRGRHPAGLNCGDTMAYATAKLAHEPLIAIGND  120

Query  121  FPQTDLEFRGVVGYWP  136
            F QTDLE  GV+GYWP
Sbjct  121  FAQTDLESDGVIGYWP  136


>gi|302528099|ref|ZP_07280441.1| predicted protein [Streptomyces sp. AA4]
 gi|302436994|gb|EFL08810.1| predicted protein [Streptomyces sp. AA4]
Length=133

 Score =  116 bits (290),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 60/128 (47%), Positives = 77/128 (61%), Gaps = 1/128 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            MI+D+SA+VA++  E P A  +A A+ GA    + APT+ E  IVL  + G     +   
Sbjct  1    MIIDSSAIVAVLM-EEPLAVPIARAIGGAEECRIGAPTLVETSIVLANKEGERGAALLAS  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
                    V +F   H    Q AFLRYGKGRH AALNFGDC+TYA A +  +PLL +G+D
Sbjct  60   FLQRRRFDVLTFGEAHWRTAQTAFLRYGKGRHSAALNFGDCLTYAAAMVAGEPLLCIGDD  119

Query  121  FPQTDLEF  128
            FPQTDLE 
Sbjct  120  FPQTDLEL  127


>gi|318040914|ref|ZP_07972870.1| hypothetical protein SCB01_04369 [Synechococcus sp. CB0101]
Length=135

 Score =  103 bits (258),  Expect = 7e-21, Method: Compositional matrix adjust.
 Identities = 56/127 (45%), Positives = 76/127 (60%), Gaps = 1/127 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++D SAV+A++Q E P      AA+A A    +SA ++ E  IV+ AR+G   +   + 
Sbjct  1    MVIDPSAVLAILQNE-PERPAFNAAIASADHCALSAASLVELSIVIEARYGSDGQGDLDL  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
              S   +S+ S   E A   + AF RYGKGRHRA+LN GDC +YA AQ   QPLL  G+D
Sbjct  60   FLSTAQISIVSLDREQAEIARAAFARYGKGRHRASLNLGDCFSYALAQWLEQPLLFKGDD  119

Query  121  FPQTDLE  127
            F  TDL+
Sbjct  120  FCHTDLQ  126


>gi|254424570|ref|ZP_05038288.1| hypothetical protein S7335_4730 [Synechococcus sp. PCC 7335]
 gi|196192059|gb|EDX87023.1| hypothetical protein S7335_4730 [Synechococcus sp. PCC 7335]
Length=131

 Score =  102 bits (255),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 54/126 (43%), Positives = 71/126 (57%), Gaps = 1/126 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++DTSA+VA++  E P  T    A+A A + +MSA T+ EC +V+ +R   + RT  E 
Sbjct  1    MVIDTSAIVAVLFDE-PERTDFVYAIAAASTRLMSASTLLECYLVIESRKQALGRTELEL  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
               E    V  F          A+  YGKGRH A LNFGDC  YA A+   +PLL  GND
Sbjct  60   FVYEADFKVVPFDKVQTVLAAAAWREYGKGRHSAGLNFGDCFAYALAKAREEPLLFKGND  119

Query  121  FPQTDL  126
            F QTD+
Sbjct  120  FSQTDI  125


>gi|337266992|ref|YP_004611047.1| PilT protein domain-containing protein [Mesorhizobium opportunistum 
WSM2075]
 gi|336027302|gb|AEH86953.1| PilT protein domain protein [Mesorhizobium opportunistum WSM2075]
Length=129

 Score =  100 bits (248),  Expect = 9e-20, Method: Compositional matrix adjust.
 Identities = 59/130 (46%), Positives = 81/130 (63%), Gaps = 7/130 (5%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            MI+D+S +VA+++ E  +   V A +  A+  ++ APT  E  +VL    G     I +R
Sbjct  1    MIIDSSVLVAILRLEPAYERFVLA-ITQANRRLLPAPTFLETTMVLA---GGRQDEILDR  56

Query  61   LRSEI---GLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAV  117
            L S +    +    FTA+HAA  ++AFLRYGKGRH AALNFGDC+ YATA+L   PLL  
Sbjct  57   LDSFLHTASIETVPFTADHAAVARQAFLRYGKGRHPAALNFGDCIAYATARLEAMPLLFK  116

Query  118  GNDFPQTDLE  127
            G+DF  TD+E
Sbjct  117  GDDFRLTDIE  126


>gi|92109698|ref|YP_571984.1| PilT protein-like [Nitrobacter hamburgensis X14]
 gi|91802780|gb|ABE65152.1| PilT protein-like [Nitrobacter hamburgensis X14]
Length=128

 Score = 99.4 bits (246),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 55/127 (44%), Positives = 74/127 (59%), Gaps = 1/127 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++DTS +VA+   E P A      +A     ++SA TV E  +V+ AR G    T  + 
Sbjct  1    MVIDTSPIVAIFFNE-PDAARFRERIADDPVRLISAATVLEAAMVIEARLGEAGGTELDL  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
               +  + +   TAEHA   +RA+ RYGKGRH A LNFGDC +YA A L  +PLL  GND
Sbjct  60   WLHKADVEIVPVTAEHADQARRAWRRYGKGRHPAGLNFGDCFSYALAALSGEPLLYKGND  119

Query  121  FPQTDLE  127
            F QTD++
Sbjct  120  FSQTDIK  126


>gi|318040907|ref|ZP_07972863.1| hypothetical protein SCB01_04334 [Synechococcus sp. CB0101]
Length=132

 Score = 97.4 bits (241),  Expect = 7e-19, Method: Compositional matrix adjust.
 Identities = 54/127 (43%), Positives = 74/127 (59%), Gaps = 1/127 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++D SAV+A++Q E P      AA+A A    +SA  + E  IV+ AR+G   +   + 
Sbjct  1    MVIDPSAVLAILQNE-PERQAFNAAIASADHCALSAALLVELSIVIEARYGSDGQGDLDL  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
              +   +S+ S     A   + AF RYGKGRHRA+LN GDC +YA AQ   QPLL  G+D
Sbjct  60   FLNTAQISIVSLDRGQAEIARAAFARYGKGRHRASLNLGDCFSYARAQWLEQPLLFKGHD  119

Query  121  FPQTDLE  127
            F  TDL+
Sbjct  120  FCHTDLQ  126


>gi|291294623|ref|YP_003506021.1| PilT domain-containing protein [Meiothermus ruber DSM 1279]
 gi|290469582|gb|ADD27001.1| PilT protein domain protein [Meiothermus ruber DSM 1279]
Length=126

 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 55/126 (44%), Positives = 73/126 (58%), Gaps = 1/126 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++D+S +V L+  E  H   +   L  A   V+ APT+ E  +VLT+R GP    + + 
Sbjct  1    MVLDSSVLVQLIFAEPGHRETLEHILE-AEVRVVGAPTLVEVGMVLTSRLGPDNLYLLDE  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
            L   +   V  F A HA     AF R GKGRH AALNFGDC++YA A++   PL  VG+D
Sbjct  60   LLMRLEARVVPFEASHAHQALSAFRRCGKGRHPAALNFGDCLSYAVAKVAGMPLAYVGDD  119

Query  121  FPQTDL  126
            F QTDL
Sbjct  120  FAQTDL  125


>gi|293980661|ref|YP_003543419.1| hypothetical protein SJA_P2-00170 [Sphingobium japonicum UT26S]
 gi|292677678|dbj|BAI99193.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length=129

 Score = 94.4 bits (233),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 51/127 (41%), Positives = 74/127 (59%), Gaps = 1/127 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            MI+DTSA+VA++  E P A   A A+  A +  +S  +  E  +V+  + GP      E 
Sbjct  1    MILDTSALVAILYRE-PEAATFAQAIHDADACRISVASYVELSMVIERQLGPEGMRQTEA  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
                 G+++   T +H    ++AFL +GKGRH+A LNFGDC +YA A+   +PLL  GND
Sbjct  60   FFRRAGITIEPVTLDHGELARQAFLDFGKGRHKAGLNFGDCFSYALAKATDEPLLFKGND  119

Query  121  FPQTDLE  127
            F  TD+E
Sbjct  120  FALTDIE  126


>gi|320449624|ref|YP_004201720.1| PilT protein domain-containing protein [Thermus scotoductus SA-01]
 gi|320149793|gb|ADW21171.1| PilT protein domain protein [Thermus scotoductus SA-01]
Length=128

 Score = 93.6 bits (231),  Expect = 9e-18, Method: Compositional matrix adjust.
 Identities = 54/126 (43%), Positives = 77/126 (62%), Gaps = 1/126 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++DTSAV+A++  E  + TL+   + G   P + APT+AE  IV+ AR G     +   
Sbjct  1    MVLDTSAVLAILLREPGYETLLQRIVRG-EPPKIGAPTLAEAGIVVVARLGFSYLHLLYE  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
            L   +G  V  FT +HA    RA+  +G+ +H A LNFGDC++YATA++   PLL  G+D
Sbjct  60   LLEALGAEVIPFTEKHAREAIRAYKEFGRAQHPAGLNFGDCLSYATARVEGMPLLYKGDD  119

Query  121  FPQTDL  126
            F QTDL
Sbjct  120  FAQTDL  125


>gi|334321234|ref|YP_004557774.1| PilT protein domain-containing protein [Sinorhizobium meliloti 
AK83]
 gi|334100022|gb|AEG58030.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
Length=128

 Score = 93.6 bits (231),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 52/126 (42%), Positives = 71/126 (57%), Gaps = 1/126 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            MIVDTSA+VA++  E P A      +  A +  +S  +  E  +V+ ++ GP      E 
Sbjct  1    MIVDTSALVAILYRE-PQAARFVNYIHDAETTRISVASYIELSMVVESQLGPDGMRQAEA  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
                 G+ V   T EH    ++AFL +GKGRH+A LNFGDC  YA A+   +PLL  GND
Sbjct  60   FFRRAGIIVEPVTLEHGELARQAFLDFGKGRHKAGLNFGDCFAYALAKASGEPLLFKGND  119

Query  121  FPQTDL  126
            F QTD+
Sbjct  120  FSQTDV  125


>gi|334315170|ref|YP_004547789.1| PilT protein domain-containing protein [Sinorhizobium meliloti 
AK83]
 gi|334094164|gb|AEG52175.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
Length=131

 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 57/128 (45%), Positives = 72/128 (57%), Gaps = 2/128 (1%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M+VD+SAVVA+ Q E   A  +A A+A A   VMSA    E  ++L AR GP +   F R
Sbjct  2    MVVDSSAVVAIFQAE-DDALPLADAMASADQLVMSAVNAHETAMILRARGGPESAEDFWR  60

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRH-RAALNFGDCMTYATAQLGHQPLLAVGN  119
              S  G+ V+ F  E A     AF R+GKG H +A LN  DC  YA A+    PLL  G+
Sbjct  61   FLSVNGIEVAPFNEEQAREASEAFGRFGKGIHSKARLNLADCAAYALAKSLSAPLLFKGD  120

Query  120  DFPQTDLE  127
            DF  TD+E
Sbjct  121  DFIHTDIE  128


>gi|227819246|ref|YP_002823217.1| hypothetical protein NGR_b10110 [Sinorhizobium fredii NGR234]
 gi|227338245|gb|ACP22464.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
Length=128

 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 50/127 (40%), Positives = 73/127 (58%), Gaps = 1/127 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++DTSA++A+   E P A      +  A    +SA TV E  IV+ AR G       + 
Sbjct  1    MVIDTSAILAIAFNE-PEAETYEQKVVDAPRRFISAATVLELAIVIEARLGEAGAAELDL  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
               + G+ V +  AE  A  +RA+  YGKGRH A LN+GDC +YA A+  ++PLL  G+D
Sbjct  60   WLYKAGVEVVAVDAEQIAVARRAWRSYGKGRHPAGLNYGDCFSYALARTRNEPLLYKGDD  119

Query  121  FPQTDLE  127
            F +TD++
Sbjct  120  FSRTDIQ  126


>gi|270208572|ref|YP_003329343.1| hypothetical protein pSmeSM11ap045 [Sinorhizobium meliloti]
 gi|76880846|gb|ABA56016.1| conserved hypothetical protein [Sinorhizobium meliloti]
Length=128

 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 51/127 (41%), Positives = 74/127 (59%), Gaps = 1/127 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++DTSA+VA+++ E P A  +  AL      ++ A  V E  +VL +R G  A    + 
Sbjct  1    MVIDTSAIVAILRNE-PEAAKLERALVANPVRLVPATCVLEARMVLVSRRGEHALAEIDL  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
              S+I   + S  ++      +A+L YGKGRH AALNF DC +YA A+   +PLL +G D
Sbjct  60   WLSKIEADIISVDSDLVDLATQAWLIYGKGRHPAALNFADCFSYALAKRADEPLLFIGKD  119

Query  121  FPQTDLE  127
            F QTD+E
Sbjct  120  FLQTDIE  126


>gi|167647416|ref|YP_001685079.1| PilT domain-containing protein [Caulobacter sp. K31]
 gi|167349846|gb|ABZ72581.1| PilT protein domain protein [Caulobacter sp. K31]
Length=132

 Score = 92.0 bits (227),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 54/129 (42%), Positives = 75/129 (59%), Gaps = 4/129 (3%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGP--VARTIF  58
            ++VDTSA++A+V  E     +   A+      +MSA TV E   V     GP   A  ++
Sbjct  2    IVVDTSALMAIVLNEVDR-DVFTEAMVRQPRKLMSAATVVEAAQVYAMAFGPEIAAGKLY  60

Query  59   ERLRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVG  118
            + LR  + + V + T EHA     A +R+G+GRHRA LNFGDC +YA A++   PLL  G
Sbjct  61   DDLRM-LRIEVINLTDEHARIAVEAAMRFGRGRHRAKLNFGDCFSYALAKVSGLPLLFKG  119

Query  119  NDFPQTDLE  127
            NDF QTD+E
Sbjct  120  NDFTQTDIE  128


>gi|150377533|ref|YP_001314128.1| PilT domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150032080|gb|ABR64195.1| PilT protein domain protein [Sinorhizobium medicae WSM419]
Length=133

 Score = 91.3 bits (225),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 52/125 (42%), Positives = 71/125 (57%), Gaps = 2/125 (1%)

Query  3    VDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFERLR  62
            VDTS ++A+   E P A    A L G  S  +  PT+ E  +VLT +  P +  I ++L 
Sbjct  4    VDTSVILAMALAE-PEAERFTA-LVGRESIAIGWPTLLEVRMVLTGKGFPNSSDIVDQLV  61

Query  63   SEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGNDFP  122
                ++  +F   H    +RAF R+GKGRH A LN GDC +YA A++   PLL  GNDF 
Sbjct  62   QLPNVAAIAFDEAHYREAERAFDRFGKGRHPATLNMGDCFSYAVARIAKAPLLFKGNDFG  121

Query  123  QTDLE  127
            QTDL+
Sbjct  122  QTDLK  126


>gi|284041784|ref|YP_003392124.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
 gi|283946005|gb|ADB48749.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=129

 Score = 90.5 bits (223),  Expect = 7e-17, Method: Compositional matrix adjust.
 Identities = 50/126 (40%), Positives = 72/126 (58%), Gaps = 1/126 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M+VD+SAVVA++  E   AT ++A L     P++SA ++ EC IV+    G V     + 
Sbjct  1    MVVDSSAVVAILLDEE-DATELSATLTDVDDPLLSAASLLECSIVMHKNSGVVGLRDLDD  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
            L  E  +         A A +RA++R+GKG   A LNFGDC +YA A+   +PLL  G D
Sbjct  60   LLQETRIRCVPVDLTQALAARRAWVRFGKGNSPAGLNFGDCFSYALARTMDRPLLFKGGD  119

Query  121  FPQTDL  126
            F +TD+
Sbjct  120  FTRTDV  125


>gi|116254471|ref|YP_770307.1| hypothetical protein pRL100005 [Rhizobium leguminosarum bv. viciae 
3841]
 gi|115259119|emb|CAK10230.1| conserved hypothetical PIN domain protein [Rhizobium leguminosarum 
bv. viciae 3841]
Length=128

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 49/126 (39%), Positives = 68/126 (54%), Gaps = 1/126 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            MI+DTSA+VA++  E P A      +  A    +S     E  +V+  + GP      + 
Sbjct  1    MIIDTSALVAILYRE-PEAASFVKIIHDAELTRISVANYVELSMVVEGQLGPDGMRQADA  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
                 G+ +   T EH    ++AFL +GKGRH+A LNFGDC  YA A+   +PLL  GND
Sbjct  60   FFRRAGIIIEPVTLEHGELARQAFLDFGKGRHKAGLNFGDCFAYALAKASGEPLLFKGND  119

Query  121  FPQTDL  126
            F QTD+
Sbjct  120  FAQTDV  125


>gi|154243676|ref|YP_001409249.1| PilT domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|154162798|gb|ABS70013.1| PilT protein domain protein [Xanthobacter autotrophicus Py2]
Length=128

 Score = 89.4 bits (220),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 49/126 (39%), Positives = 76/126 (61%), Gaps = 1/126 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++DTSA+VA+++ E P A  +   + GA   ++ A  V E  +VL +R G  A    + 
Sbjct  1    MVIDTSAIVAILRNE-PEADALERLIVGAPVRLVPATCVFEARMVLVSRRGEHALAEIDL  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
              ++IG  +    AE A    +A+L +GKGRH AALNF DC +YA ++  ++ LL +GND
Sbjct  60   WLTKIGADIIPVDAELADLATQAWLAHGKGRHPAALNFADCFSYALSKRSNERLLFIGND  119

Query  121  FPQTDL  126
            F +TD+
Sbjct  120  FSKTDI  125


>gi|241554096|ref|YP_002979309.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii 
WSM1325]
 gi|240863402|gb|ACS61064.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii 
WSM1325]
Length=128

 Score = 89.0 bits (219),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 49/126 (39%), Positives = 68/126 (54%), Gaps = 1/126 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            MI+DTSA+VA++  E P A      +  A    +S     E  +V+  + GP      E 
Sbjct  1    MIIDTSALVAILYRE-PEAASFVKIIHDAELTRISVANYVELSMVVEGQLGPDGMRQAEA  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
                 G+ +   T EH    ++AFL +G+GRH+A LNFGDC  YA A+   +PLL  GND
Sbjct  60   FFRRAGIIIEPVTLEHCELARQAFLDFGQGRHKAGLNFGDCFAYALAKASGEPLLFKGND  119

Query  121  FPQTDL  126
            F QTD+
Sbjct  120  FAQTDV  125


>gi|15964557|ref|NP_384910.1| hypothetical protein SMc00900 [Sinorhizobium meliloti 1021]
 gi|334315270|ref|YP_004547889.1| PilT protein domain-containing protein [Sinorhizobium meliloti 
AK83]
 gi|15073735|emb|CAC45376.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|333810691|gb|AEG03360.1| PilT protein domain protein [Sinorhizobium meliloti BL225C]
 gi|334094264|gb|AEG52275.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
 gi|336031808|gb|AEH77740.1| hypothetical protein SM11_chr0459 [Sinorhizobium meliloti SM11]
Length=128

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 50/128 (40%), Positives = 72/128 (57%), Gaps = 5/128 (3%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPV--MSAPTVAECLIVLTARHGPVARTIF  58
            M++DTSA+ A+   E+   +        A  PV  +SA T  E  +V+  R G  A    
Sbjct  1    MVIDTSAIAAIAFNEQEAGSFREKI---ADDPVRLISAATALEAAMVIETRLGEAAGAEL  57

Query  59   ERLRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVG  118
            +    +  + + + TAEH    +RA+ R+GKGRH A LNFGDC +YA A L ++PLL  G
Sbjct  58   DLWLYKANVEIVAVTAEHMDQARRAWRRFGKGRHPAGLNFGDCFSYALAFLTNEPLLFKG  117

Query  119  NDFPQTDL  126
            +DF QTD+
Sbjct  118  SDFSQTDI  125


>gi|218295220|ref|ZP_03496056.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
 gi|218244423|gb|EED10948.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
Length=130

 Score = 88.2 bits (217),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 55/135 (41%), Positives = 80/135 (60%), Gaps = 13/135 (9%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++DTSA++A++  E  +  L+   +  AH   ++APT+AE  IVL AR G      FER
Sbjct  1    MVLDTSALLAILFREEGYEDLLEE-IRRAHPRKVAAPTLAEAGIVLGARLG------FER  53

Query  61   LRSEIGL------SVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPL  114
            +   + L       V  F+  HA     A+ RYG+GRH A LNFGDC++YA A++  +PL
Sbjct  54   VYLLLALLSELQAEVIPFSEAHAREAISAYRRYGRGRHPAGLNFGDCLSYALAKVEGEPL  113

Query  115  LAVGNDFPQTDLEFR  129
            L  G DF +TDL ++
Sbjct  114  LYKGEDFDRTDLAWK  128


>gi|120402183|ref|YP_952012.1| PilT domain-containing protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955001|gb|ABM12006.1| PilT protein domain protein [Mycobacterium vanbaalenii PYR-1]
Length=131

 Score = 88.2 bits (217),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 51/125 (41%), Positives = 70/125 (56%), Gaps = 2/125 (1%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            MI D+SA++A+++ E   A   A ALA A    +SA +  EC IVL A+  PV     + 
Sbjct  1    MIADSSAIIAILRDE-DDAVDYARALAAADVRRLSAASYLECGIVLDAQRDPVVSRALDE  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGR-HRAALNFGDCMTYATAQLGHQPLLAVGN  119
            L  E  +++   T   A   +RA+  +GKG  H A LNFGDC++YA A    +PLL  GN
Sbjct  60   LIDEAAMTIEPVTERQAKLARRAYADFGKGSGHPAGLNFGDCLSYALALDRREPLLWKGN  119

Query  120  DFPQT  124
            DF  T
Sbjct  120  DFGHT  124


>gi|339499339|ref|YP_004697374.1| PilT protein domain-containing protein [Spirochaeta caldaria 
DSM 7334]
 gi|338833688|gb|AEJ18866.1| PilT protein domain protein [Spirochaeta caldaria DSM 7334]
Length=131

 Score = 87.8 bits (216),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 51/126 (41%), Positives = 69/126 (55%), Gaps = 1/126 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M+VD+SA++A++ GE   A L   AL      ++SA    E  IV+ AR G +       
Sbjct  1    MVVDSSAILAILLGE-SDADLYIDALCSGERLLISAVNHLEVAIVIEARKGAIGGESLHS  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
            L +  G+ V    A  A     A+  YGKGRH AALN GDC  YA A+  +QPLL  G+D
Sbjct  60   LMTHSGIEVLPLDASQAEIALAAWRTYGKGRHPAALNLGDCAAYALAKTLNQPLLYKGDD  119

Query  121  FPQTDL  126
            F +TD+
Sbjct  120  FSKTDI  125


>gi|299138782|ref|ZP_07031960.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298599418|gb|EFI55578.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
Length=128

 Score = 87.8 bits (216),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 48/126 (39%), Positives = 75/126 (60%), Gaps = 1/126 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++D+SA+VA++  E P A++  +A+    + ++SA T+ E  IV+  R  P A    + 
Sbjct  1    MVIDSSALVAILLAE-PDASIYISAILNDVTRLISAATLVETSIVMIRRREPDAIAALDA  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
            + + + L+V     E A   ++ F R+GKG  RA LNFGDC +YA A   ++PLL  GND
Sbjct  60   VVARLQLTVIPVDREQALLARQGFRRFGKGLDRAGLNFGDCFSYALAMHLNEPLLFKGND  119

Query  121  FPQTDL  126
            F  TD+
Sbjct  120  FTFTDV  125


>gi|15609896|ref|NP_217275.1| hypothetical protein Rv2759c [Mycobacterium tuberculosis H37Rv]
 gi|15842297|ref|NP_337334.1| hypothetical protein MT2829 [Mycobacterium tuberculosis CDC1551]
 gi|31793933|ref|NP_856426.1| hypothetical protein Mb2780c [Mycobacterium bovis AF2122/97]
 82 more sequence titles
 Length=131

 Score = 87.0 bits (214),  Expect = 8e-16, Method: Compositional matrix adjust.
 Identities = 50/127 (40%), Positives = 72/127 (57%), Gaps = 2/127 (1%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            MIVDTSA+VA+V GE   A ++  AL  + +  MSAP   E   ++  R  P    + +R
Sbjct  1    MIVDTSAIVAIVSGE-SGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDR  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGR-HRAALNFGDCMTYATAQLGHQPLLAVGN  119
            L  + G+ V +  A+ A    +A+  YG+G  H A LN GD  +YA AQ+  +PLL  G+
Sbjct  60   LLDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGD  119

Query  120  DFPQTDL  126
            DF  TD+
Sbjct  120  DFTHTDI  126


>gi|192292981|ref|YP_001993586.1| PilT protein domain-containing protein [Rhodopseudomonas palustris 
TIE-1]
 gi|192286730|gb|ACF03111.1| PilT protein domain protein [Rhodopseudomonas palustris TIE-1]
Length=134

 Score = 87.0 bits (214),  Expect = 9e-16, Method: Compositional matrix adjust.
 Identities = 50/130 (39%), Positives = 72/130 (56%), Gaps = 5/130 (3%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHG---PVARTI  57
            +++DTSA++A+ + E P A   A  +A    PV+S+  + E  IVL          A   
Sbjct  2    IVIDTSAIIAIFR-EEPEAAQFARLIASDDQPVLSSGNLLETAIVLRGLKDIQPAKAERW  60

Query  58   FERLRSEIGLSVSSFTAEHAAATQRAFLRYGKGR-HRAALNFGDCMTYATAQLGHQPLLA  116
             +   +E G+ +   T E A   + A LR+GKG  H+AALN+GDC  YA A+  + PLL 
Sbjct  61   LDDFIAEAGIRIEPVTTEQAGYARSAHLRFGKGTGHKAALNYGDCFAYALAKAVNAPLLC  120

Query  117  VGNDFPQTDL  126
             GNDFP TD+
Sbjct  121  KGNDFPLTDI  130


>gi|39937202|ref|NP_949478.1| PilT protein N-terminal [Rhodopseudomonas palustris CGA009]
 gi|39651060|emb|CAE29583.1| PilT protein, N-terminal [Rhodopseudomonas palustris CGA009]
Length=134

 Score = 86.7 bits (213),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 50/130 (39%), Positives = 72/130 (56%), Gaps = 5/130 (3%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHG---PVARTI  57
            +++DTSA++A+ + E P A   A  +A    PV+S+  + E  IVL          A   
Sbjct  2    IVIDTSAIIAIFR-EEPEAAQFARLIASDDQPVLSSGNLLETAIVLRGLKDIQPAKAERW  60

Query  58   FERLRSEIGLSVSSFTAEHAAATQRAFLRYGKGR-HRAALNFGDCMTYATAQLGHQPLLA  116
             +   +E G+ +   T E A   + A LR+GKG  H+AALN+GDC  YA A+  + PLL 
Sbjct  61   LDDFIAEAGIRIEPVTTEQAGYARSAHLRFGKGTGHKAALNYGDCFAYALAKALNAPLLC  120

Query  117  VGNDFPQTDL  126
             GNDFP TD+
Sbjct  121  KGNDFPLTDI  130


>gi|153869463|ref|ZP_01999056.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152074054|gb|EDN70954.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length=131

 Score = 86.7 bits (213),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 45/127 (36%), Positives = 70/127 (56%), Gaps = 1/127 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++DTSA++A++  E P A   A A+      ++SA +  E  +V+ AR G   +   + 
Sbjct  1    MVIDTSALIAILLRE-PEAEKFAKAIISNRKRLLSAFSALETGVVIEARKGNPGKQELDL  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
            L S   + + +   E       A+ ++GKG H A LN GDC +YA A+   +PLL  GND
Sbjct  60   LLSYTKIDIVALNDEQVQMAMEAWRKFGKGHHPAKLNLGDCCSYALAKYFDEPLLFKGND  119

Query  121  FPQTDLE  127
            F QTD++
Sbjct  120  FNQTDIK  126


>gi|55980470|ref|YP_143767.1| hypothetical protein TTHA0501 [Thermus thermophilus HB8]
 gi|55771883|dbj|BAD70324.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length=130

 Score = 85.5 bits (210),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 49/129 (38%), Positives = 75/129 (59%), Gaps = 1/129 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++DTSA++ ++  E  +  L+   L       ++APT+AE  IVL AR G     +   
Sbjct  1    MVLDTSALLGILFREEGYEELLEQ-LRRTRPHKVAAPTLAEAGIVLGARLGFERVHLLFE  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
            L +E+   +  FT  HA     A+ RYG+G+H A LNFGDC++YA A++  +PLL  G  
Sbjct  60   LLTELQAEIVPFTERHAREAISAYRRYGRGKHPAGLNFGDCLSYALARVEGEPLLYKGQG  119

Query  121  FPQTDLEFR  129
            F +TDL ++
Sbjct  120  FDRTDLAWK  128


>gi|336116293|ref|YP_004571059.1| hypothetical protein MLP_06420 [Microlunatus phosphovorus NM-1]
 gi|334684071|dbj|BAK33656.1| hypothetical protein MLP_06420 [Microlunatus phosphovorus NM-1]
Length=133

 Score = 85.5 bits (210),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 53/127 (42%), Positives = 75/127 (60%), Gaps = 2/127 (1%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPV-MSAPTVAECLIVLTARHGPVARTIFE  59
            ++VDTSAV+A++ GE P A+  A AL+     + MSA ++ E  IVL +R GP A    E
Sbjct  3    VVVDTSAVLAVLLGE-PDASRYADALSRNIGDLHMSAVSLVETRIVLESRKGPDAAADLE  61

Query  60   RLRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGN  119
             L + + + V + TA+ A     A+ R+GKG H A LN GDC +YA  +     LL  G+
Sbjct  62   TLIARVSIRVEAVTADQADRAWGAWRRFGKGCHPARLNLGDCFSYALVRALRGNLLYKGD  121

Query  120  DFPQTDL  126
            DF QTD+
Sbjct  122  DFSQTDV  128


>gi|220919621|ref|YP_002494924.1| PilT protein domain protein [Methylobacterium nodulans ORS 2060]
 gi|219952041|gb|ACL62432.1| PilT protein domain protein [Methylobacterium nodulans ORS 2060]
Length=128

 Score = 85.5 bits (210),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 53/126 (43%), Positives = 72/126 (58%), Gaps = 1/126 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++DTSA+VA+   E P A      +A     ++SA TV E  +VL  R G    +  + 
Sbjct  1    MVIDTSAIVAIALDE-PEAAGFERKIADDPVRLISAATVLEAAMVLETRLGEAGGSELDL  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
               +  + + +   EHA   +RA+ RYGKGRH A LNFGDC +YA A L  +PLL  GND
Sbjct  60   WLHKAEVEIVAVEPEHADRARRAWRRYGKGRHSAGLNFGDCFSYALAALTGEPLLFKGND  119

Query  121  FPQTDL  126
            F QTD+
Sbjct  120  FSQTDV  125


>gi|222081455|ref|YP_002540818.1| hypothetical protein Arad_7798 [Agrobacterium radiobacter K84]
 gi|221726134|gb|ACM29223.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length=134

 Score = 85.1 bits (209),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 47/125 (38%), Positives = 70/125 (56%), Gaps = 2/125 (1%)

Query  3    VDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFERLR  62
            VDTS ++A+  GE      ++  L G  +  +  PT+ E  +VLT R  P A  I ++  
Sbjct  4    VDTSVILAMALGEPEAERFIS--LVGREALAIGWPTLLEARMVLTGRGFPNASDIVDQFL  61

Query  63   SEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGNDFP  122
                ++  +F  +H    +RAF R+GKGRH AALN G+C +YA A +   PLL  G DF 
Sbjct  62   RLPNVTAIAFDEKHYREAERAFDRFGKGRHPAALNMGECFSYAVAAVARAPLLFKGQDFG  121

Query  123  QTDLE  127
            +TD++
Sbjct  122  RTDVK  126


>gi|153012021|ref|YP_001373233.1| PilT domain-containing protein [Ochrobactrum anthropi ATCC 49188]
 gi|151563909|gb|ABS17404.1| PilT protein domain protein [Ochrobactrum anthropi ATCC 49188]
Length=128

 Score = 85.1 bits (209),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 47/127 (38%), Positives = 69/127 (55%), Gaps = 1/127 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++DTSA+V +++ E P A  +  A+      ++ A  V E  +V+ +R G  A    + 
Sbjct  1    MVIDTSAIVTILRNE-PQAERLERAIVADPIRLVPATCVFEARMVMVSRRGEHALAEIDL  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
              S+I   +    AE      +A+L YG GRHRA LNF DC +YA A+     LL +G D
Sbjct  60   WLSKIAAEIIPVDAELVDLATQAWLTYGMGRHRAGLNFADCFSYALAKRADDALLFIGED  119

Query  121  FPQTDLE  127
            F QTD+E
Sbjct  120  FKQTDIE  126


>gi|84495502|ref|ZP_00994621.1| hypothetical protein JNB_11889 [Janibacter sp. HTCC2649]
 gi|84384995|gb|EAQ00875.1| hypothetical protein JNB_11889 [Janibacter sp. HTCC2649]
Length=132

 Score = 84.3 bits (207),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 54/128 (43%), Positives = 72/128 (57%), Gaps = 3/128 (2%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAH--SPVMSAPTVAECLIVLTARHGPVARTIF  58
            M+VDTSA+VA+V GE P A     AL  A   S VMS  T  E  +V+ AR GP A    
Sbjct  1    MVVDTSALVAIVLGE-PDAESFKDALRAAPPGSLVMSPVTAVEAAMVVEARQGPDAAREL  59

Query  59   ERLRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVG  118
            E L + + L +     + +AA    + R+GKGRH A+LN GD   YA A+   + LL  G
Sbjct  60   EGLIATLFLRIEPLDGDQSAAAIEGWRRFGKGRHPASLNLGDLFPYALARTTGEALLFKG  119

Query  119  NDFPQTDL  126
            +DF +TD+
Sbjct  120  DDFARTDV  127


>gi|316935649|ref|YP_004110631.1| PilT domain-containing protein [Rhodopseudomonas palustris DX-1]
 gi|315603363|gb|ADU45898.1| PilT protein domain protein [Rhodopseudomonas palustris DX-1]
Length=134

 Score = 82.8 bits (203),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 48/130 (37%), Positives = 71/130 (55%), Gaps = 5/130 (3%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHG---PVARTI  57
            +++DTSA++A+ + E+  A   A  +A    PV+S+  + E  IVL          A   
Sbjct  2    IVIDTSAIIAIFRKEQEAAQF-ARLIASDDQPVLSSGNLLETAIVLRGLKDVQPAKAERW  60

Query  58   FERLRSEIGLSVSSFTAEHAAATQRAFLRYGKGR-HRAALNFGDCMTYATAQLGHQPLLA  116
             +   +E G+ +   T E A   + A LR+GKG  H+AALN+GDC  Y  A+  + PLL 
Sbjct  61   LDDFIAEAGIRIEPVTTEQAGYARSAHLRFGKGTGHKAALNYGDCFAYVLAKALNAPLLC  120

Query  117  VGNDFPQTDL  126
             GNDFP TD+
Sbjct  121  KGNDFPLTDI  130


>gi|298529281|ref|ZP_07016684.1| PilT protein domain protein [Desulfonatronospira thiodismutans 
ASO3-1]
 gi|298510717|gb|EFI34620.1| PilT protein domain protein [Desulfonatronospira thiodismutans 
ASO3-1]
Length=130

 Score = 82.8 bits (203),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 47/126 (38%), Positives = 69/126 (55%), Gaps = 1/126 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M+ DTSA++A++ GE P A ++   +A +   +MS+ +V E  IVL AR G       + 
Sbjct  1    MVSDTSAIIAILTGE-PEADVLTRVIAESPDVMMSSFSVLETGIVLEARKGEAGGRELDL  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
                  + V    +E     + A+ R+GKGRH A LN GDC  YA A+    PLL  G+D
Sbjct  60   FLQRARVRVMPLDSEQVRIAREAWRRFGKGRHPAGLNIGDCCAYALAKSTGAPLLFKGHD  119

Query  121  FPQTDL  126
            F +TD+
Sbjct  120  FSKTDI  125


>gi|46198433|ref|YP_004100.1| hypothetical protein TTC0125 [Thermus thermophilus HB27]
 gi|46196055|gb|AAS80473.1| hypothetical conserved protein [Thermus thermophilus HB27]
Length=130

 Score = 82.8 bits (203),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 43/96 (45%), Positives = 60/96 (63%), Gaps = 0/96 (0%)

Query  34   MSAPTVAECLIVLTARHGPVARTIFERLRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHR  93
            ++APT+AE  IVL AR G     +   L +E+   +  FT  HA     A+ RYG+GRH 
Sbjct  33   VAAPTLAEAGIVLGARLGFERVHLLFELLTELQAEIVPFTERHAREAISAYRRYGRGRHP  92

Query  94   AALNFGDCMTYATAQLGHQPLLAVGNDFPQTDLEFR  129
            A LNFGDC++YA A++  +PLL  G DF +TDL ++
Sbjct  93   AGLNFGDCLSYALARVEGEPLLYKGQDFDRTDLAWK  128


>gi|90422855|ref|YP_531225.1| PilT protein-like protein [Rhodopseudomonas palustris BisB18]
 gi|90104869|gb|ABD86906.1| PilT protein-like [Rhodopseudomonas palustris BisB18]
Length=132

 Score = 81.6 bits (200),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 54/129 (42%), Positives = 74/129 (58%), Gaps = 1/129 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++DTSA+VA+   E   A+ +   +A     ++SA TV E  +VL  R G      F+ 
Sbjct  1    MVIDTSAIVAIALNE-ADASDIEIRIADDPVRLISAATVVEATMVLETRLGETGGREFDL  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
               +IG  + +  AE A A +RA+ RYGKG H AALN+GDC +YA A    +PLL  G D
Sbjct  60   RLLKIGAEIVAGDAEQADAARRAWRRYGKGHHAAALNYGDCFSYALAVTRGEPLLFKGED  119

Query  121  FPQTDLEFR  129
            F QTD+  R
Sbjct  120  FAQTDINRR  128


>gi|258650323|ref|YP_003199479.1| PilT protein domain-containing protein [Nakamurella multipartita 
DSM 44233]
 gi|258553548|gb|ACV76490.1| PilT protein domain protein [Nakamurella multipartita DSM 44233]
Length=133

 Score = 81.6 bits (200),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 56/127 (45%), Positives = 72/127 (57%), Gaps = 2/127 (1%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPV-MSAPTVAECLIVLTARHGPVARTIFE  59
            +++DTSAV A++ GE P A   AAAL      + +SA T  E  IVL AR G  A +  E
Sbjct  4    VVLDTSAVAAVIFGE-PDAEAFAAALTRHGGELSISAVTRVELEIVLEARQGSEAVSDAE  62

Query  60   RLRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGN  119
             +   +G+      A  A A   A+ R+GKGRH A LN GDC +YA A+    PLL  GN
Sbjct  63   AMFDRLGVITEPVDAAQAGAAFAAWRRFGKGRHPAGLNLGDCFSYALARAAGAPLLFKGN  122

Query  120  DFPQTDL  126
            DF QTD+
Sbjct  123  DFAQTDI  129


>gi|316934115|ref|YP_004109097.1| PilT domain-containing protein [Rhodopseudomonas palustris DX-1]
 gi|315601829|gb|ADU44364.1| PilT protein domain protein [Rhodopseudomonas palustris DX-1]
Length=126

 Score = 81.6 bits (200),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 48/126 (39%), Positives = 68/126 (54%), Gaps = 1/126 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++DTS +VA+   E P A  + A +A     ++SA TV E  IVL  + G      F+ 
Sbjct  1    MVIDTSVIVAIALDE-PDAAALEARIADDPVRLISAATVLEATIVLETKLGDAGGREFDL  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
               +IG  +    AE   A +RA+ R GKGRH A LN+GDC  +A A    +PLL  G D
Sbjct  60   WLLKIGAEIVPVDAEQMEAARRAWRRTGKGRHAADLNYGDCFAHALAITRGEPLLYKGED  119

Query  121  FPQTDL  126
            F + ++
Sbjct  120  FAKMEI  125


>gi|153012093|ref|YP_001373304.1| PilT domain-containing protein [Ochrobactrum anthropi ATCC 49188]
 gi|151563981|gb|ABS17475.1| PilT protein domain protein [Ochrobactrum anthropi ATCC 49188]
Length=127

 Score = 81.3 bits (199),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 53/124 (43%), Positives = 70/124 (57%), Gaps = 4/124 (3%)

Query  3    VDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFERLR  62
            VDTSA++A+V  E P       A+  A   ++SA TV E LIV   R+  V   + + L 
Sbjct  4    VDTSALMAIVLNE-PKGEACMTAIERADELLISAGTVTEALIVAARRN--VGEEV-DALI  59

Query  63   SEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGNDFP  122
            S +G  + S TA  A     A+ R+GKG H A+LN+GDC +Y  A     PLL VG+DF 
Sbjct  60   SGLGFEIVSVTAASARRVANAYARWGKGIHPASLNYGDCFSYEVAHEHGCPLLYVGDDFV  119

Query  123  QTDL  126
            QTDL
Sbjct  120  QTDL  123


>gi|15607764|ref|NP_215138.1| hypothetical protein Rv0624 [Mycobacterium tuberculosis H37Rv]
 gi|15840025|ref|NP_335062.1| hypothetical protein MT0652 [Mycobacterium tuberculosis CDC1551]
 gi|31791806|ref|NP_854299.1| hypothetical protein Mb0640 [Mycobacterium bovis AF2122/97]
 80 more sequence titles
 Length=131

 Score = 80.9 bits (198),  Expect = 7e-14, Method: Compositional matrix adjust.
 Identities = 48/126 (39%), Positives = 70/126 (56%), Gaps = 1/126 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++DTSA+VA++  E P A    AA+   H  +MS  +  E  +V+ AR G       + 
Sbjct  1    MVIDTSALVAMLSDE-PDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDL  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
                  + + +  A+ A A + A+  YGKGRHRA LN+GDC +Y  A++  QPLL  G D
Sbjct  60   WLHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGED  119

Query  121  FPQTDL  126
            F  TD+
Sbjct  120  FQHTDI  125


>gi|296444600|ref|ZP_06886564.1| PilT protein domain protein [Methylosinus trichosporium OB3b]
 gi|296257868|gb|EFH04931.1| PilT protein domain protein [Methylosinus trichosporium OB3b]
Length=127

 Score = 80.5 bits (197),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 53/125 (43%), Positives = 70/125 (56%), Gaps = 4/125 (3%)

Query  3    VDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFERLR  62
            VDTSA++A+V GE   A    AAL+   + V+SA T+AE LIV   R+         RL 
Sbjct  4    VDTSALMAIVLGE-AEADACIAALSTKDALVISAGTLAEALIVAGRRN---VGDEMARLI  59

Query  63   SEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGNDFP  122
             E+G  V   T   A     A+ ++GKG H A+LNFGDC  Y  AQ     LL +G+DF 
Sbjct  60   DELGFEVVPVTTASARRVALAYRKWGKGVHPASLNFGDCFAYVAAQERGCGLLYIGDDFR  119

Query  123  QTDLE  127
            +TD+E
Sbjct  120  RTDVE  124


>gi|118472447|ref|YP_885674.1| PilT domain-containing protein [Mycobacterium smegmatis str. 
MC2 155]
 gi|118173734|gb|ABK74630.1| PIN domain protein [Mycobacterium smegmatis str. MC2 155]
Length=129

 Score = 80.1 bits (196),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 49/126 (39%), Positives = 72/126 (58%), Gaps = 1/126 (0%)

Query  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60
            M++DTSA+VA++  E P A L+  A+A      MS  +  E  IV+ +R G       + 
Sbjct  1    MVIDTSALVAILTDE-PDAELLEGAVADDPVRTMSTASYLETAIVIESRFGEPGGRELDL  59

Query  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND  120
                  +++ +  A+ A A + A+ RYGKGRHRA LN+GDC +YA A++  QPLL  G  
Sbjct  60   WLHRASVALVAVDADQADAARLAYRRYGKGRHRAGLNYGDCFSYALAKVSGQPLLFKGEA  119

Query  121  FPQTDL  126
            F  TD+
Sbjct  120  FRLTDV  125



Lambda     K      H
   0.323    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131443546824


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40