BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1982c
Length=139
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609119|ref|NP_216498.1| hypothetical protein Rv1982c [Mycob... 283 9e-75
gi|340626995|ref|YP_004745447.1| hypothetical protein MCAN_20021... 280 7e-74
gi|15841458|ref|NP_336495.1| hypothetical protein MT2034 [Mycoba... 280 7e-74
gi|108802462|ref|YP_642658.1| PilT protein-like protein [Mycobac... 199 1e-49
gi|240171116|ref|ZP_04749775.1| PilT domain-containing protein [... 194 3e-48
gi|240170938|ref|ZP_04749597.1| PilT domain-containing protein [... 178 2e-43
gi|302528099|ref|ZP_07280441.1| predicted protein [Streptomyces ... 116 1e-24
gi|318040914|ref|ZP_07972870.1| hypothetical protein SCB01_04369... 103 7e-21
gi|254424570|ref|ZP_05038288.1| hypothetical protein S7335_4730 ... 102 2e-20
gi|337266992|ref|YP_004611047.1| PilT protein domain-containing ... 100 9e-20
gi|92109698|ref|YP_571984.1| PilT protein-like [Nitrobacter hamb... 99.4 2e-19
gi|318040907|ref|ZP_07972863.1| hypothetical protein SCB01_04334... 97.4 7e-19
gi|291294623|ref|YP_003506021.1| PilT domain-containing protein ... 95.1 3e-18
gi|293980661|ref|YP_003543419.1| hypothetical protein SJA_P2-001... 94.4 5e-18
gi|320449624|ref|YP_004201720.1| PilT protein domain-containing ... 93.6 9e-18
gi|334321234|ref|YP_004557774.1| PilT protein domain-containing ... 93.6 1e-17
gi|334315170|ref|YP_004547789.1| PilT protein domain-containing ... 92.4 2e-17
gi|227819246|ref|YP_002823217.1| hypothetical protein NGR_b10110... 92.4 2e-17
gi|270208572|ref|YP_003329343.1| hypothetical protein pSmeSM11ap... 92.4 2e-17
gi|167647416|ref|YP_001685079.1| PilT domain-containing protein ... 92.0 3e-17
gi|150377533|ref|YP_001314128.1| PilT domain-containing protein ... 91.3 5e-17
gi|284041784|ref|YP_003392124.1| PilT protein domain protein [Co... 90.5 7e-17
gi|116254471|ref|YP_770307.1| hypothetical protein pRL100005 [Rh... 89.7 1e-16
gi|154243676|ref|YP_001409249.1| PilT domain-containing protein ... 89.4 2e-16
gi|241554096|ref|YP_002979309.1| PilT protein domain protein [Rh... 89.0 2e-16
gi|15964557|ref|NP_384910.1| hypothetical protein SMc00900 [Sino... 88.6 3e-16
gi|218295220|ref|ZP_03496056.1| PilT protein domain protein [The... 88.2 4e-16
gi|120402183|ref|YP_952012.1| PilT domain-containing protein [My... 88.2 4e-16
gi|339499339|ref|YP_004697374.1| PilT protein domain-containing ... 87.8 5e-16
gi|299138782|ref|ZP_07031960.1| PilT protein domain protein [Aci... 87.8 6e-16
gi|15609896|ref|NP_217275.1| hypothetical protein Rv2759c [Mycob... 87.0 8e-16
gi|192292981|ref|YP_001993586.1| PilT protein domain-containing ... 87.0 9e-16
gi|39937202|ref|NP_949478.1| PilT protein N-terminal [Rhodopseud... 86.7 1e-15
gi|153869463|ref|ZP_01999056.1| conserved hypothetical protein [... 86.7 1e-15
gi|55980470|ref|YP_143767.1| hypothetical protein TTHA0501 [Ther... 85.5 2e-15
gi|336116293|ref|YP_004571059.1| hypothetical protein MLP_06420 ... 85.5 3e-15
gi|220919621|ref|YP_002494924.1| PilT protein domain protein [Me... 85.5 3e-15
gi|222081455|ref|YP_002540818.1| hypothetical protein Arad_7798 ... 85.1 3e-15
gi|153012021|ref|YP_001373233.1| PilT domain-containing protein ... 85.1 3e-15
gi|84495502|ref|ZP_00994621.1| hypothetical protein JNB_11889 [J... 84.3 6e-15
gi|316935649|ref|YP_004110631.1| PilT domain-containing protein ... 82.8 2e-14
gi|298529281|ref|ZP_07016684.1| PilT protein domain protein [Des... 82.8 2e-14
gi|46198433|ref|YP_004100.1| hypothetical protein TTC0125 [Therm... 82.8 2e-14
gi|90422855|ref|YP_531225.1| PilT protein-like protein [Rhodopse... 81.6 4e-14
gi|258650323|ref|YP_003199479.1| PilT protein domain-containing ... 81.6 4e-14
gi|316934115|ref|YP_004109097.1| PilT domain-containing protein ... 81.6 4e-14
gi|153012093|ref|YP_001373304.1| PilT domain-containing protein ... 81.3 5e-14
gi|15607764|ref|NP_215138.1| hypothetical protein Rv0624 [Mycoba... 80.9 7e-14
gi|296444600|ref|ZP_06886564.1| PilT protein domain protein [Met... 80.5 9e-14
gi|118472447|ref|YP_885674.1| PilT domain-containing protein [My... 80.1 1e-13
>gi|15609119|ref|NP_216498.1| hypothetical protein Rv1982c [Mycobacterium tuberculosis H37Rv]
gi|31793161|ref|NP_855654.1| hypothetical protein Mb2004c [Mycobacterium bovis AF2122/97]
gi|148661791|ref|YP_001283314.1| hypothetical protein MRA_1993 [Mycobacterium tuberculosis H37Ra]
71 more sequence titles
Length=139
Score = 283 bits (723), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER
Sbjct 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND
Sbjct 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
Query 121 FPQTDLEFRGVVGYWPGVA 139
FPQTDLEFRGVVGYWPGVA
Sbjct 121 FPQTDLEFRGVVGYWPGVA 139
>gi|340626995|ref|YP_004745447.1| hypothetical protein MCAN_20021 [Mycobacterium canettii CIPT
140010059]
gi|340005185|emb|CCC44334.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=139
Score = 280 bits (715), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 138/139 (99%), Positives = 138/139 (99%), Gaps = 0/139 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
MIVDTSAVVALVQGERPHATLVAAALAGA SPVMSAPTVAECLIVLTARHGPVARTIFER
Sbjct 1 MIVDTSAVVALVQGERPHATLVAAALAGADSPVMSAPTVAECLIVLTARHGPVARTIFER 60
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND
Sbjct 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
Query 121 FPQTDLEFRGVVGYWPGVA 139
FPQTDLEFRGVVGYWPGVA
Sbjct 121 FPQTDLEFRGVVGYWPGVA 139
>gi|15841458|ref|NP_336495.1| hypothetical protein MT2034 [Mycobacterium tuberculosis CDC1551]
gi|254232152|ref|ZP_04925479.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254364799|ref|ZP_04980845.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|13881698|gb|AAK46309.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|124601211|gb|EAY60221.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|134150313|gb|EBA42358.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|323719469|gb|EGB28596.1| toxin protein [Mycobacterium tuberculosis CDC1551A]
Length=139
Score = 280 bits (715), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 138/139 (99%), Positives = 138/139 (99%), Gaps = 0/139 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER
Sbjct 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND
Sbjct 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
Query 121 FPQTDLEFRGVVGYWPGVA 139
FPQTD EFRGVVGYWPGVA
Sbjct 121 FPQTDHEFRGVVGYWPGVA 139
>gi|108802462|ref|YP_642658.1| PilT protein-like protein [Mycobacterium sp. MCS]
gi|119855289|ref|YP_935892.1| PilT domain-containing protein [Mycobacterium sp. KMS]
gi|108772881|gb|ABG11602.1| PilT protein-like protein [Mycobacterium sp. MCS]
gi|119698006|gb|ABL95077.1| PilT protein domain protein [Mycobacterium sp. KMS]
Length=139
Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/136 (69%), Positives = 112/136 (83%), Gaps = 0/136 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
MI+DTSAV+AL+Q E PHA VAAALAG +PVM+AP V ECLIVLT+RHGP+ART+F+R
Sbjct 1 MIIDTSAVLALIQREDPHAEHVAAALAGDRNPVMAAPNVVECLIVLTSRHGPIARTVFDR 60
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
L SEI L V+ FT EHAAA RA+ +YG+GRH AAL+FGD M YA A+L H+PL+AVG D
Sbjct 61 LSSEINLGVAQFTTEHAAAAHRAYSQYGRGRHPAALSFGDTMAYAAAKLAHEPLIAVGGD 120
Query 121 FPQTDLEFRGVVGYWP 136
F +TDLEF GV+GYWP
Sbjct 121 FARTDLEFDGVIGYWP 136
>gi|240171116|ref|ZP_04749775.1| PilT domain-containing protein [Mycobacterium kansasii ATCC 12478]
gi|296165342|ref|ZP_06847883.1| PilT protein family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295899233|gb|EFG78698.1| PilT protein family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=140
Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 89/136 (66%), Positives = 106/136 (78%), Gaps = 0/136 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
+I+D+SA+VAL+QGE P+ +AAA+A SPVMS AECLIVLT RHG ART+F+R
Sbjct 3 LIIDSSAIVALIQGEDPYTEQIAAAIAADPSPVMSTANAAECLIVLTNRHGATARTVFDR 62
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
LRSEI L FT EHA A RA+L YGKGRH AALN+GD M YATA+L H+PL+A+GND
Sbjct 63 LRSEINLGFQPFTLEHAIAAHRAYLHYGKGRHPAALNYGDTMAYATAKLAHEPLIAIGND 122
Query 121 FPQTDLEFRGVVGYWP 136
F QTDLEF GV+GYWP
Sbjct 123 FTQTDLEFNGVIGYWP 138
>gi|240170938|ref|ZP_04749597.1| PilT domain-containing protein [Mycobacterium kansasii ATCC 12478]
Length=140
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/136 (63%), Positives = 101/136 (75%), Gaps = 0/136 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
MI+D+SA VAL+QGE P+ +AAAL G SPVMS AECLIVLT+RHG +ART+F+R
Sbjct 1 MILDSSAFVALIQGEAPYTEQIAAALTGDRSPVMSTANAAECLIVLTSRHGFIARTVFDR 60
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
LR EI L F E A A A+LRYG+GRH A LN GD M YATA+L H+PL+A+GND
Sbjct 61 LRFEINLGFQPFNFELAMAAHLAYLRYGRGRHPAGLNCGDTMAYATAKLAHEPLIAIGND 120
Query 121 FPQTDLEFRGVVGYWP 136
F QTDLE GV+GYWP
Sbjct 121 FAQTDLESDGVIGYWP 136
>gi|302528099|ref|ZP_07280441.1| predicted protein [Streptomyces sp. AA4]
gi|302436994|gb|EFL08810.1| predicted protein [Streptomyces sp. AA4]
Length=133
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/128 (47%), Positives = 77/128 (61%), Gaps = 1/128 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
MI+D+SA+VA++ E P A +A A+ GA + APT+ E IVL + G +
Sbjct 1 MIIDSSAIVAVLM-EEPLAVPIARAIGGAEECRIGAPTLVETSIVLANKEGERGAALLAS 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
V +F H Q AFLRYGKGRH AALNFGDC+TYA A + +PLL +G+D
Sbjct 60 FLQRRRFDVLTFGEAHWRTAQTAFLRYGKGRHSAALNFGDCLTYAAAMVAGEPLLCIGDD 119
Query 121 FPQTDLEF 128
FPQTDLE
Sbjct 120 FPQTDLEL 127
>gi|318040914|ref|ZP_07972870.1| hypothetical protein SCB01_04369 [Synechococcus sp. CB0101]
Length=135
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/127 (45%), Positives = 76/127 (60%), Gaps = 1/127 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++D SAV+A++Q E P AA+A A +SA ++ E IV+ AR+G + +
Sbjct 1 MVIDPSAVLAILQNE-PERPAFNAAIASADHCALSAASLVELSIVIEARYGSDGQGDLDL 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
S +S+ S E A + AF RYGKGRHRA+LN GDC +YA AQ QPLL G+D
Sbjct 60 FLSTAQISIVSLDREQAEIARAAFARYGKGRHRASLNLGDCFSYALAQWLEQPLLFKGDD 119
Query 121 FPQTDLE 127
F TDL+
Sbjct 120 FCHTDLQ 126
>gi|254424570|ref|ZP_05038288.1| hypothetical protein S7335_4730 [Synechococcus sp. PCC 7335]
gi|196192059|gb|EDX87023.1| hypothetical protein S7335_4730 [Synechococcus sp. PCC 7335]
Length=131
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/126 (43%), Positives = 71/126 (57%), Gaps = 1/126 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++DTSA+VA++ E P T A+A A + +MSA T+ EC +V+ +R + RT E
Sbjct 1 MVIDTSAIVAVLFDE-PERTDFVYAIAAASTRLMSASTLLECYLVIESRKQALGRTELEL 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
E V F A+ YGKGRH A LNFGDC YA A+ +PLL GND
Sbjct 60 FVYEADFKVVPFDKVQTVLAAAAWREYGKGRHSAGLNFGDCFAYALAKAREEPLLFKGND 119
Query 121 FPQTDL 126
F QTD+
Sbjct 120 FSQTDI 125
>gi|337266992|ref|YP_004611047.1| PilT protein domain-containing protein [Mesorhizobium opportunistum
WSM2075]
gi|336027302|gb|AEH86953.1| PilT protein domain protein [Mesorhizobium opportunistum WSM2075]
Length=129
Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/130 (46%), Positives = 81/130 (63%), Gaps = 7/130 (5%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
MI+D+S +VA+++ E + V A + A+ ++ APT E +VL G I +R
Sbjct 1 MIIDSSVLVAILRLEPAYERFVLA-ITQANRRLLPAPTFLETTMVLA---GGRQDEILDR 56
Query 61 LRSEI---GLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAV 117
L S + + FTA+HAA ++AFLRYGKGRH AALNFGDC+ YATA+L PLL
Sbjct 57 LDSFLHTASIETVPFTADHAAVARQAFLRYGKGRHPAALNFGDCIAYATARLEAMPLLFK 116
Query 118 GNDFPQTDLE 127
G+DF TD+E
Sbjct 117 GDDFRLTDIE 126
>gi|92109698|ref|YP_571984.1| PilT protein-like [Nitrobacter hamburgensis X14]
gi|91802780|gb|ABE65152.1| PilT protein-like [Nitrobacter hamburgensis X14]
Length=128
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/127 (44%), Positives = 74/127 (59%), Gaps = 1/127 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++DTS +VA+ E P A +A ++SA TV E +V+ AR G T +
Sbjct 1 MVIDTSPIVAIFFNE-PDAARFRERIADDPVRLISAATVLEAAMVIEARLGEAGGTELDL 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
+ + + TAEHA +RA+ RYGKGRH A LNFGDC +YA A L +PLL GND
Sbjct 60 WLHKADVEIVPVTAEHADQARRAWRRYGKGRHPAGLNFGDCFSYALAALSGEPLLYKGND 119
Query 121 FPQTDLE 127
F QTD++
Sbjct 120 FSQTDIK 126
>gi|318040907|ref|ZP_07972863.1| hypothetical protein SCB01_04334 [Synechococcus sp. CB0101]
Length=132
Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/127 (43%), Positives = 74/127 (59%), Gaps = 1/127 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++D SAV+A++Q E P AA+A A +SA + E IV+ AR+G + +
Sbjct 1 MVIDPSAVLAILQNE-PERQAFNAAIASADHCALSAALLVELSIVIEARYGSDGQGDLDL 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
+ +S+ S A + AF RYGKGRHRA+LN GDC +YA AQ QPLL G+D
Sbjct 60 FLNTAQISIVSLDRGQAEIARAAFARYGKGRHRASLNLGDCFSYARAQWLEQPLLFKGHD 119
Query 121 FPQTDLE 127
F TDL+
Sbjct 120 FCHTDLQ 126
>gi|291294623|ref|YP_003506021.1| PilT domain-containing protein [Meiothermus ruber DSM 1279]
gi|290469582|gb|ADD27001.1| PilT protein domain protein [Meiothermus ruber DSM 1279]
Length=126
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/126 (44%), Positives = 73/126 (58%), Gaps = 1/126 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++D+S +V L+ E H + L A V+ APT+ E +VLT+R GP + +
Sbjct 1 MVLDSSVLVQLIFAEPGHRETLEHILE-AEVRVVGAPTLVEVGMVLTSRLGPDNLYLLDE 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
L + V F A HA AF R GKGRH AALNFGDC++YA A++ PL VG+D
Sbjct 60 LLMRLEARVVPFEASHAHQALSAFRRCGKGRHPAALNFGDCLSYAVAKVAGMPLAYVGDD 119
Query 121 FPQTDL 126
F QTDL
Sbjct 120 FAQTDL 125
>gi|293980661|ref|YP_003543419.1| hypothetical protein SJA_P2-00170 [Sphingobium japonicum UT26S]
gi|292677678|dbj|BAI99193.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length=129
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/127 (41%), Positives = 74/127 (59%), Gaps = 1/127 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
MI+DTSA+VA++ E P A A A+ A + +S + E +V+ + GP E
Sbjct 1 MILDTSALVAILYRE-PEAATFAQAIHDADACRISVASYVELSMVIERQLGPEGMRQTEA 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
G+++ T +H ++AFL +GKGRH+A LNFGDC +YA A+ +PLL GND
Sbjct 60 FFRRAGITIEPVTLDHGELARQAFLDFGKGRHKAGLNFGDCFSYALAKATDEPLLFKGND 119
Query 121 FPQTDLE 127
F TD+E
Sbjct 120 FALTDIE 126
>gi|320449624|ref|YP_004201720.1| PilT protein domain-containing protein [Thermus scotoductus SA-01]
gi|320149793|gb|ADW21171.1| PilT protein domain protein [Thermus scotoductus SA-01]
Length=128
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/126 (43%), Positives = 77/126 (62%), Gaps = 1/126 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++DTSAV+A++ E + TL+ + G P + APT+AE IV+ AR G +
Sbjct 1 MVLDTSAVLAILLREPGYETLLQRIVRG-EPPKIGAPTLAEAGIVVVARLGFSYLHLLYE 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
L +G V FT +HA RA+ +G+ +H A LNFGDC++YATA++ PLL G+D
Sbjct 60 LLEALGAEVIPFTEKHAREAIRAYKEFGRAQHPAGLNFGDCLSYATARVEGMPLLYKGDD 119
Query 121 FPQTDL 126
F QTDL
Sbjct 120 FAQTDL 125
>gi|334321234|ref|YP_004557774.1| PilT protein domain-containing protein [Sinorhizobium meliloti
AK83]
gi|334100022|gb|AEG58030.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
Length=128
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/126 (42%), Positives = 71/126 (57%), Gaps = 1/126 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
MIVDTSA+VA++ E P A + A + +S + E +V+ ++ GP E
Sbjct 1 MIVDTSALVAILYRE-PQAARFVNYIHDAETTRISVASYIELSMVVESQLGPDGMRQAEA 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
G+ V T EH ++AFL +GKGRH+A LNFGDC YA A+ +PLL GND
Sbjct 60 FFRRAGIIVEPVTLEHGELARQAFLDFGKGRHKAGLNFGDCFAYALAKASGEPLLFKGND 119
Query 121 FPQTDL 126
F QTD+
Sbjct 120 FSQTDV 125
>gi|334315170|ref|YP_004547789.1| PilT protein domain-containing protein [Sinorhizobium meliloti
AK83]
gi|334094164|gb|AEG52175.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
Length=131
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/128 (45%), Positives = 72/128 (57%), Gaps = 2/128 (1%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M+VD+SAVVA+ Q E A +A A+A A VMSA E ++L AR GP + F R
Sbjct 2 MVVDSSAVVAIFQAE-DDALPLADAMASADQLVMSAVNAHETAMILRARGGPESAEDFWR 60
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRH-RAALNFGDCMTYATAQLGHQPLLAVGN 119
S G+ V+ F E A AF R+GKG H +A LN DC YA A+ PLL G+
Sbjct 61 FLSVNGIEVAPFNEEQAREASEAFGRFGKGIHSKARLNLADCAAYALAKSLSAPLLFKGD 120
Query 120 DFPQTDLE 127
DF TD+E
Sbjct 121 DFIHTDIE 128
>gi|227819246|ref|YP_002823217.1| hypothetical protein NGR_b10110 [Sinorhizobium fredii NGR234]
gi|227338245|gb|ACP22464.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
Length=128
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/127 (40%), Positives = 73/127 (58%), Gaps = 1/127 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++DTSA++A+ E P A + A +SA TV E IV+ AR G +
Sbjct 1 MVIDTSAILAIAFNE-PEAETYEQKVVDAPRRFISAATVLELAIVIEARLGEAGAAELDL 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
+ G+ V + AE A +RA+ YGKGRH A LN+GDC +YA A+ ++PLL G+D
Sbjct 60 WLYKAGVEVVAVDAEQIAVARRAWRSYGKGRHPAGLNYGDCFSYALARTRNEPLLYKGDD 119
Query 121 FPQTDLE 127
F +TD++
Sbjct 120 FSRTDIQ 126
>gi|270208572|ref|YP_003329343.1| hypothetical protein pSmeSM11ap045 [Sinorhizobium meliloti]
gi|76880846|gb|ABA56016.1| conserved hypothetical protein [Sinorhizobium meliloti]
Length=128
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/127 (41%), Positives = 74/127 (59%), Gaps = 1/127 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++DTSA+VA+++ E P A + AL ++ A V E +VL +R G A +
Sbjct 1 MVIDTSAIVAILRNE-PEAAKLERALVANPVRLVPATCVLEARMVLVSRRGEHALAEIDL 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
S+I + S ++ +A+L YGKGRH AALNF DC +YA A+ +PLL +G D
Sbjct 60 WLSKIEADIISVDSDLVDLATQAWLIYGKGRHPAALNFADCFSYALAKRADEPLLFIGKD 119
Query 121 FPQTDLE 127
F QTD+E
Sbjct 120 FLQTDIE 126
>gi|167647416|ref|YP_001685079.1| PilT domain-containing protein [Caulobacter sp. K31]
gi|167349846|gb|ABZ72581.1| PilT protein domain protein [Caulobacter sp. K31]
Length=132
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/129 (42%), Positives = 75/129 (59%), Gaps = 4/129 (3%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGP--VARTIF 58
++VDTSA++A+V E + A+ +MSA TV E V GP A ++
Sbjct 2 IVVDTSALMAIVLNEVDR-DVFTEAMVRQPRKLMSAATVVEAAQVYAMAFGPEIAAGKLY 60
Query 59 ERLRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVG 118
+ LR + + V + T EHA A +R+G+GRHRA LNFGDC +YA A++ PLL G
Sbjct 61 DDLRM-LRIEVINLTDEHARIAVEAAMRFGRGRHRAKLNFGDCFSYALAKVSGLPLLFKG 119
Query 119 NDFPQTDLE 127
NDF QTD+E
Sbjct 120 NDFTQTDIE 128
>gi|150377533|ref|YP_001314128.1| PilT domain-containing protein [Sinorhizobium medicae WSM419]
gi|150032080|gb|ABR64195.1| PilT protein domain protein [Sinorhizobium medicae WSM419]
Length=133
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/125 (42%), Positives = 71/125 (57%), Gaps = 2/125 (1%)
Query 3 VDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFERLR 62
VDTS ++A+ E P A A L G S + PT+ E +VLT + P + I ++L
Sbjct 4 VDTSVILAMALAE-PEAERFTA-LVGRESIAIGWPTLLEVRMVLTGKGFPNSSDIVDQLV 61
Query 63 SEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGNDFP 122
++ +F H +RAF R+GKGRH A LN GDC +YA A++ PLL GNDF
Sbjct 62 QLPNVAAIAFDEAHYREAERAFDRFGKGRHPATLNMGDCFSYAVARIAKAPLLFKGNDFG 121
Query 123 QTDLE 127
QTDL+
Sbjct 122 QTDLK 126
>gi|284041784|ref|YP_003392124.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
gi|283946005|gb|ADB48749.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=129
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/126 (40%), Positives = 72/126 (58%), Gaps = 1/126 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M+VD+SAVVA++ E AT ++A L P++SA ++ EC IV+ G V +
Sbjct 1 MVVDSSAVVAILLDEE-DATELSATLTDVDDPLLSAASLLECSIVMHKNSGVVGLRDLDD 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
L E + A A +RA++R+GKG A LNFGDC +YA A+ +PLL G D
Sbjct 60 LLQETRIRCVPVDLTQALAARRAWVRFGKGNSPAGLNFGDCFSYALARTMDRPLLFKGGD 119
Query 121 FPQTDL 126
F +TD+
Sbjct 120 FTRTDV 125
>gi|116254471|ref|YP_770307.1| hypothetical protein pRL100005 [Rhizobium leguminosarum bv. viciae
3841]
gi|115259119|emb|CAK10230.1| conserved hypothetical PIN domain protein [Rhizobium leguminosarum
bv. viciae 3841]
Length=128
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/126 (39%), Positives = 68/126 (54%), Gaps = 1/126 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
MI+DTSA+VA++ E P A + A +S E +V+ + GP +
Sbjct 1 MIIDTSALVAILYRE-PEAASFVKIIHDAELTRISVANYVELSMVVEGQLGPDGMRQADA 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
G+ + T EH ++AFL +GKGRH+A LNFGDC YA A+ +PLL GND
Sbjct 60 FFRRAGIIIEPVTLEHGELARQAFLDFGKGRHKAGLNFGDCFAYALAKASGEPLLFKGND 119
Query 121 FPQTDL 126
F QTD+
Sbjct 120 FAQTDV 125
>gi|154243676|ref|YP_001409249.1| PilT domain-containing protein [Xanthobacter autotrophicus Py2]
gi|154162798|gb|ABS70013.1| PilT protein domain protein [Xanthobacter autotrophicus Py2]
Length=128
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/126 (39%), Positives = 76/126 (61%), Gaps = 1/126 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++DTSA+VA+++ E P A + + GA ++ A V E +VL +R G A +
Sbjct 1 MVIDTSAIVAILRNE-PEADALERLIVGAPVRLVPATCVFEARMVLVSRRGEHALAEIDL 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
++IG + AE A +A+L +GKGRH AALNF DC +YA ++ ++ LL +GND
Sbjct 60 WLTKIGADIIPVDAELADLATQAWLAHGKGRHPAALNFADCFSYALSKRSNERLLFIGND 119
Query 121 FPQTDL 126
F +TD+
Sbjct 120 FSKTDI 125
>gi|241554096|ref|YP_002979309.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240863402|gb|ACS61064.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length=128
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/126 (39%), Positives = 68/126 (54%), Gaps = 1/126 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
MI+DTSA+VA++ E P A + A +S E +V+ + GP E
Sbjct 1 MIIDTSALVAILYRE-PEAASFVKIIHDAELTRISVANYVELSMVVEGQLGPDGMRQAEA 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
G+ + T EH ++AFL +G+GRH+A LNFGDC YA A+ +PLL GND
Sbjct 60 FFRRAGIIIEPVTLEHCELARQAFLDFGQGRHKAGLNFGDCFAYALAKASGEPLLFKGND 119
Query 121 FPQTDL 126
F QTD+
Sbjct 120 FAQTDV 125
>gi|15964557|ref|NP_384910.1| hypothetical protein SMc00900 [Sinorhizobium meliloti 1021]
gi|334315270|ref|YP_004547889.1| PilT protein domain-containing protein [Sinorhizobium meliloti
AK83]
gi|15073735|emb|CAC45376.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|333810691|gb|AEG03360.1| PilT protein domain protein [Sinorhizobium meliloti BL225C]
gi|334094264|gb|AEG52275.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
gi|336031808|gb|AEH77740.1| hypothetical protein SM11_chr0459 [Sinorhizobium meliloti SM11]
Length=128
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/128 (40%), Positives = 72/128 (57%), Gaps = 5/128 (3%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPV--MSAPTVAECLIVLTARHGPVARTIF 58
M++DTSA+ A+ E+ + A PV +SA T E +V+ R G A
Sbjct 1 MVIDTSAIAAIAFNEQEAGSFREKI---ADDPVRLISAATALEAAMVIETRLGEAAGAEL 57
Query 59 ERLRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVG 118
+ + + + + TAEH +RA+ R+GKGRH A LNFGDC +YA A L ++PLL G
Sbjct 58 DLWLYKANVEIVAVTAEHMDQARRAWRRFGKGRHPAGLNFGDCFSYALAFLTNEPLLFKG 117
Query 119 NDFPQTDL 126
+DF QTD+
Sbjct 118 SDFSQTDI 125
>gi|218295220|ref|ZP_03496056.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
gi|218244423|gb|EED10948.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
Length=130
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/135 (41%), Positives = 80/135 (60%), Gaps = 13/135 (9%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++DTSA++A++ E + L+ + AH ++APT+AE IVL AR G FER
Sbjct 1 MVLDTSALLAILFREEGYEDLLEE-IRRAHPRKVAAPTLAEAGIVLGARLG------FER 53
Query 61 LRSEIGL------SVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPL 114
+ + L V F+ HA A+ RYG+GRH A LNFGDC++YA A++ +PL
Sbjct 54 VYLLLALLSELQAEVIPFSEAHAREAISAYRRYGRGRHPAGLNFGDCLSYALAKVEGEPL 113
Query 115 LAVGNDFPQTDLEFR 129
L G DF +TDL ++
Sbjct 114 LYKGEDFDRTDLAWK 128
>gi|120402183|ref|YP_952012.1| PilT domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119955001|gb|ABM12006.1| PilT protein domain protein [Mycobacterium vanbaalenii PYR-1]
Length=131
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/125 (41%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
MI D+SA++A+++ E A A ALA A +SA + EC IVL A+ PV +
Sbjct 1 MIADSSAIIAILRDE-DDAVDYARALAAADVRRLSAASYLECGIVLDAQRDPVVSRALDE 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGR-HRAALNFGDCMTYATAQLGHQPLLAVGN 119
L E +++ T A +RA+ +GKG H A LNFGDC++YA A +PLL GN
Sbjct 60 LIDEAAMTIEPVTERQAKLARRAYADFGKGSGHPAGLNFGDCLSYALALDRREPLLWKGN 119
Query 120 DFPQT 124
DF T
Sbjct 120 DFGHT 124
>gi|339499339|ref|YP_004697374.1| PilT protein domain-containing protein [Spirochaeta caldaria
DSM 7334]
gi|338833688|gb|AEJ18866.1| PilT protein domain protein [Spirochaeta caldaria DSM 7334]
Length=131
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/126 (41%), Positives = 69/126 (55%), Gaps = 1/126 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M+VD+SA++A++ GE A L AL ++SA E IV+ AR G +
Sbjct 1 MVVDSSAILAILLGE-SDADLYIDALCSGERLLISAVNHLEVAIVIEARKGAIGGESLHS 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
L + G+ V A A A+ YGKGRH AALN GDC YA A+ +QPLL G+D
Sbjct 60 LMTHSGIEVLPLDASQAEIALAAWRTYGKGRHPAALNLGDCAAYALAKTLNQPLLYKGDD 119
Query 121 FPQTDL 126
F +TD+
Sbjct 120 FSKTDI 125
>gi|299138782|ref|ZP_07031960.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
gi|298599418|gb|EFI55578.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
Length=128
Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/126 (39%), Positives = 75/126 (60%), Gaps = 1/126 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++D+SA+VA++ E P A++ +A+ + ++SA T+ E IV+ R P A +
Sbjct 1 MVIDSSALVAILLAE-PDASIYISAILNDVTRLISAATLVETSIVMIRRREPDAIAALDA 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
+ + + L+V E A ++ F R+GKG RA LNFGDC +YA A ++PLL GND
Sbjct 60 VVARLQLTVIPVDREQALLARQGFRRFGKGLDRAGLNFGDCFSYALAMHLNEPLLFKGND 119
Query 121 FPQTDL 126
F TD+
Sbjct 120 FTFTDV 125
>gi|15609896|ref|NP_217275.1| hypothetical protein Rv2759c [Mycobacterium tuberculosis H37Rv]
gi|15842297|ref|NP_337334.1| hypothetical protein MT2829 [Mycobacterium tuberculosis CDC1551]
gi|31793933|ref|NP_856426.1| hypothetical protein Mb2780c [Mycobacterium bovis AF2122/97]
82 more sequence titles
Length=131
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/127 (40%), Positives = 72/127 (57%), Gaps = 2/127 (1%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
MIVDTSA+VA+V GE A ++ AL + + MSAP E ++ R P + +R
Sbjct 1 MIVDTSAIVAIVSGE-SGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDR 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGR-HRAALNFGDCMTYATAQLGHQPLLAVGN 119
L + G+ V + A+ A +A+ YG+G H A LN GD +YA AQ+ +PLL G+
Sbjct 60 LLDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGD 119
Query 120 DFPQTDL 126
DF TD+
Sbjct 120 DFTHTDI 126
>gi|192292981|ref|YP_001993586.1| PilT protein domain-containing protein [Rhodopseudomonas palustris
TIE-1]
gi|192286730|gb|ACF03111.1| PilT protein domain protein [Rhodopseudomonas palustris TIE-1]
Length=134
Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/130 (39%), Positives = 72/130 (56%), Gaps = 5/130 (3%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHG---PVARTI 57
+++DTSA++A+ + E P A A +A PV+S+ + E IVL A
Sbjct 2 IVIDTSAIIAIFR-EEPEAAQFARLIASDDQPVLSSGNLLETAIVLRGLKDIQPAKAERW 60
Query 58 FERLRSEIGLSVSSFTAEHAAATQRAFLRYGKGR-HRAALNFGDCMTYATAQLGHQPLLA 116
+ +E G+ + T E A + A LR+GKG H+AALN+GDC YA A+ + PLL
Sbjct 61 LDDFIAEAGIRIEPVTTEQAGYARSAHLRFGKGTGHKAALNYGDCFAYALAKAVNAPLLC 120
Query 117 VGNDFPQTDL 126
GNDFP TD+
Sbjct 121 KGNDFPLTDI 130
>gi|39937202|ref|NP_949478.1| PilT protein N-terminal [Rhodopseudomonas palustris CGA009]
gi|39651060|emb|CAE29583.1| PilT protein, N-terminal [Rhodopseudomonas palustris CGA009]
Length=134
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/130 (39%), Positives = 72/130 (56%), Gaps = 5/130 (3%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHG---PVARTI 57
+++DTSA++A+ + E P A A +A PV+S+ + E IVL A
Sbjct 2 IVIDTSAIIAIFR-EEPEAAQFARLIASDDQPVLSSGNLLETAIVLRGLKDIQPAKAERW 60
Query 58 FERLRSEIGLSVSSFTAEHAAATQRAFLRYGKGR-HRAALNFGDCMTYATAQLGHQPLLA 116
+ +E G+ + T E A + A LR+GKG H+AALN+GDC YA A+ + PLL
Sbjct 61 LDDFIAEAGIRIEPVTTEQAGYARSAHLRFGKGTGHKAALNYGDCFAYALAKALNAPLLC 120
Query 117 VGNDFPQTDL 126
GNDFP TD+
Sbjct 121 KGNDFPLTDI 130
>gi|153869463|ref|ZP_01999056.1| conserved hypothetical protein [Beggiatoa sp. PS]
gi|152074054|gb|EDN70954.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length=131
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/127 (36%), Positives = 70/127 (56%), Gaps = 1/127 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++DTSA++A++ E P A A A+ ++SA + E +V+ AR G + +
Sbjct 1 MVIDTSALIAILLRE-PEAEKFAKAIISNRKRLLSAFSALETGVVIEARKGNPGKQELDL 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
L S + + + E A+ ++GKG H A LN GDC +YA A+ +PLL GND
Sbjct 60 LLSYTKIDIVALNDEQVQMAMEAWRKFGKGHHPAKLNLGDCCSYALAKYFDEPLLFKGND 119
Query 121 FPQTDLE 127
F QTD++
Sbjct 120 FNQTDIK 126
>gi|55980470|ref|YP_143767.1| hypothetical protein TTHA0501 [Thermus thermophilus HB8]
gi|55771883|dbj|BAD70324.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length=130
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/129 (38%), Positives = 75/129 (59%), Gaps = 1/129 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++DTSA++ ++ E + L+ L ++APT+AE IVL AR G +
Sbjct 1 MVLDTSALLGILFREEGYEELLEQ-LRRTRPHKVAAPTLAEAGIVLGARLGFERVHLLFE 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
L +E+ + FT HA A+ RYG+G+H A LNFGDC++YA A++ +PLL G
Sbjct 60 LLTELQAEIVPFTERHAREAISAYRRYGRGKHPAGLNFGDCLSYALARVEGEPLLYKGQG 119
Query 121 FPQTDLEFR 129
F +TDL ++
Sbjct 120 FDRTDLAWK 128
>gi|336116293|ref|YP_004571059.1| hypothetical protein MLP_06420 [Microlunatus phosphovorus NM-1]
gi|334684071|dbj|BAK33656.1| hypothetical protein MLP_06420 [Microlunatus phosphovorus NM-1]
Length=133
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/127 (42%), Positives = 75/127 (60%), Gaps = 2/127 (1%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPV-MSAPTVAECLIVLTARHGPVARTIFE 59
++VDTSAV+A++ GE P A+ A AL+ + MSA ++ E IVL +R GP A E
Sbjct 3 VVVDTSAVLAVLLGE-PDASRYADALSRNIGDLHMSAVSLVETRIVLESRKGPDAAADLE 61
Query 60 RLRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGN 119
L + + + V + TA+ A A+ R+GKG H A LN GDC +YA + LL G+
Sbjct 62 TLIARVSIRVEAVTADQADRAWGAWRRFGKGCHPARLNLGDCFSYALVRALRGNLLYKGD 121
Query 120 DFPQTDL 126
DF QTD+
Sbjct 122 DFSQTDV 128
>gi|220919621|ref|YP_002494924.1| PilT protein domain protein [Methylobacterium nodulans ORS 2060]
gi|219952041|gb|ACL62432.1| PilT protein domain protein [Methylobacterium nodulans ORS 2060]
Length=128
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/126 (43%), Positives = 72/126 (58%), Gaps = 1/126 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++DTSA+VA+ E P A +A ++SA TV E +VL R G + +
Sbjct 1 MVIDTSAIVAIALDE-PEAAGFERKIADDPVRLISAATVLEAAMVLETRLGEAGGSELDL 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
+ + + + EHA +RA+ RYGKGRH A LNFGDC +YA A L +PLL GND
Sbjct 60 WLHKAEVEIVAVEPEHADRARRAWRRYGKGRHSAGLNFGDCFSYALAALTGEPLLFKGND 119
Query 121 FPQTDL 126
F QTD+
Sbjct 120 FSQTDV 125
>gi|222081455|ref|YP_002540818.1| hypothetical protein Arad_7798 [Agrobacterium radiobacter K84]
gi|221726134|gb|ACM29223.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length=134
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/125 (38%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query 3 VDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFERLR 62
VDTS ++A+ GE ++ L G + + PT+ E +VLT R P A I ++
Sbjct 4 VDTSVILAMALGEPEAERFIS--LVGREALAIGWPTLLEARMVLTGRGFPNASDIVDQFL 61
Query 63 SEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGNDFP 122
++ +F +H +RAF R+GKGRH AALN G+C +YA A + PLL G DF
Sbjct 62 RLPNVTAIAFDEKHYREAERAFDRFGKGRHPAALNMGECFSYAVAAVARAPLLFKGQDFG 121
Query 123 QTDLE 127
+TD++
Sbjct 122 RTDVK 126
>gi|153012021|ref|YP_001373233.1| PilT domain-containing protein [Ochrobactrum anthropi ATCC 49188]
gi|151563909|gb|ABS17404.1| PilT protein domain protein [Ochrobactrum anthropi ATCC 49188]
Length=128
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/127 (38%), Positives = 69/127 (55%), Gaps = 1/127 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++DTSA+V +++ E P A + A+ ++ A V E +V+ +R G A +
Sbjct 1 MVIDTSAIVTILRNE-PQAERLERAIVADPIRLVPATCVFEARMVMVSRRGEHALAEIDL 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
S+I + AE +A+L YG GRHRA LNF DC +YA A+ LL +G D
Sbjct 60 WLSKIAAEIIPVDAELVDLATQAWLTYGMGRHRAGLNFADCFSYALAKRADDALLFIGED 119
Query 121 FPQTDLE 127
F QTD+E
Sbjct 120 FKQTDIE 126
>gi|84495502|ref|ZP_00994621.1| hypothetical protein JNB_11889 [Janibacter sp. HTCC2649]
gi|84384995|gb|EAQ00875.1| hypothetical protein JNB_11889 [Janibacter sp. HTCC2649]
Length=132
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/128 (43%), Positives = 72/128 (57%), Gaps = 3/128 (2%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAH--SPVMSAPTVAECLIVLTARHGPVARTIF 58
M+VDTSA+VA+V GE P A AL A S VMS T E +V+ AR GP A
Sbjct 1 MVVDTSALVAIVLGE-PDAESFKDALRAAPPGSLVMSPVTAVEAAMVVEARQGPDAAREL 59
Query 59 ERLRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVG 118
E L + + L + + +AA + R+GKGRH A+LN GD YA A+ + LL G
Sbjct 60 EGLIATLFLRIEPLDGDQSAAAIEGWRRFGKGRHPASLNLGDLFPYALARTTGEALLFKG 119
Query 119 NDFPQTDL 126
+DF +TD+
Sbjct 120 DDFARTDV 127
>gi|316935649|ref|YP_004110631.1| PilT domain-containing protein [Rhodopseudomonas palustris DX-1]
gi|315603363|gb|ADU45898.1| PilT protein domain protein [Rhodopseudomonas palustris DX-1]
Length=134
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/130 (37%), Positives = 71/130 (55%), Gaps = 5/130 (3%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHG---PVARTI 57
+++DTSA++A+ + E+ A A +A PV+S+ + E IVL A
Sbjct 2 IVIDTSAIIAIFRKEQEAAQF-ARLIASDDQPVLSSGNLLETAIVLRGLKDVQPAKAERW 60
Query 58 FERLRSEIGLSVSSFTAEHAAATQRAFLRYGKGR-HRAALNFGDCMTYATAQLGHQPLLA 116
+ +E G+ + T E A + A LR+GKG H+AALN+GDC Y A+ + PLL
Sbjct 61 LDDFIAEAGIRIEPVTTEQAGYARSAHLRFGKGTGHKAALNYGDCFAYVLAKALNAPLLC 120
Query 117 VGNDFPQTDL 126
GNDFP TD+
Sbjct 121 KGNDFPLTDI 130
>gi|298529281|ref|ZP_07016684.1| PilT protein domain protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298510717|gb|EFI34620.1| PilT protein domain protein [Desulfonatronospira thiodismutans
ASO3-1]
Length=130
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/126 (38%), Positives = 69/126 (55%), Gaps = 1/126 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M+ DTSA++A++ GE P A ++ +A + +MS+ +V E IVL AR G +
Sbjct 1 MVSDTSAIIAILTGE-PEADVLTRVIAESPDVMMSSFSVLETGIVLEARKGEAGGRELDL 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
+ V +E + A+ R+GKGRH A LN GDC YA A+ PLL G+D
Sbjct 60 FLQRARVRVMPLDSEQVRIAREAWRRFGKGRHPAGLNIGDCCAYALAKSTGAPLLFKGHD 119
Query 121 FPQTDL 126
F +TD+
Sbjct 120 FSKTDI 125
>gi|46198433|ref|YP_004100.1| hypothetical protein TTC0125 [Thermus thermophilus HB27]
gi|46196055|gb|AAS80473.1| hypothetical conserved protein [Thermus thermophilus HB27]
Length=130
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/96 (45%), Positives = 60/96 (63%), Gaps = 0/96 (0%)
Query 34 MSAPTVAECLIVLTARHGPVARTIFERLRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHR 93
++APT+AE IVL AR G + L +E+ + FT HA A+ RYG+GRH
Sbjct 33 VAAPTLAEAGIVLGARLGFERVHLLFELLTELQAEIVPFTERHAREAISAYRRYGRGRHP 92
Query 94 AALNFGDCMTYATAQLGHQPLLAVGNDFPQTDLEFR 129
A LNFGDC++YA A++ +PLL G DF +TDL ++
Sbjct 93 AGLNFGDCLSYALARVEGEPLLYKGQDFDRTDLAWK 128
>gi|90422855|ref|YP_531225.1| PilT protein-like protein [Rhodopseudomonas palustris BisB18]
gi|90104869|gb|ABD86906.1| PilT protein-like [Rhodopseudomonas palustris BisB18]
Length=132
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/129 (42%), Positives = 74/129 (58%), Gaps = 1/129 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++DTSA+VA+ E A+ + +A ++SA TV E +VL R G F+
Sbjct 1 MVIDTSAIVAIALNE-ADASDIEIRIADDPVRLISAATVVEATMVLETRLGETGGREFDL 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
+IG + + AE A A +RA+ RYGKG H AALN+GDC +YA A +PLL G D
Sbjct 60 RLLKIGAEIVAGDAEQADAARRAWRRYGKGHHAAALNYGDCFSYALAVTRGEPLLFKGED 119
Query 121 FPQTDLEFR 129
F QTD+ R
Sbjct 120 FAQTDINRR 128
>gi|258650323|ref|YP_003199479.1| PilT protein domain-containing protein [Nakamurella multipartita
DSM 44233]
gi|258553548|gb|ACV76490.1| PilT protein domain protein [Nakamurella multipartita DSM 44233]
Length=133
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/127 (45%), Positives = 72/127 (57%), Gaps = 2/127 (1%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPV-MSAPTVAECLIVLTARHGPVARTIFE 59
+++DTSAV A++ GE P A AAAL + +SA T E IVL AR G A + E
Sbjct 4 VVLDTSAVAAVIFGE-PDAEAFAAALTRHGGELSISAVTRVELEIVLEARQGSEAVSDAE 62
Query 60 RLRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGN 119
+ +G+ A A A A+ R+GKGRH A LN GDC +YA A+ PLL GN
Sbjct 63 AMFDRLGVITEPVDAAQAGAAFAAWRRFGKGRHPAGLNLGDCFSYALARAAGAPLLFKGN 122
Query 120 DFPQTDL 126
DF QTD+
Sbjct 123 DFAQTDI 129
>gi|316934115|ref|YP_004109097.1| PilT domain-containing protein [Rhodopseudomonas palustris DX-1]
gi|315601829|gb|ADU44364.1| PilT protein domain protein [Rhodopseudomonas palustris DX-1]
Length=126
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/126 (39%), Positives = 68/126 (54%), Gaps = 1/126 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++DTS +VA+ E P A + A +A ++SA TV E IVL + G F+
Sbjct 1 MVIDTSVIVAIALDE-PDAAALEARIADDPVRLISAATVLEATIVLETKLGDAGGREFDL 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
+IG + AE A +RA+ R GKGRH A LN+GDC +A A +PLL G D
Sbjct 60 WLLKIGAEIVPVDAEQMEAARRAWRRTGKGRHAADLNYGDCFAHALAITRGEPLLYKGED 119
Query 121 FPQTDL 126
F + ++
Sbjct 120 FAKMEI 125
>gi|153012093|ref|YP_001373304.1| PilT domain-containing protein [Ochrobactrum anthropi ATCC 49188]
gi|151563981|gb|ABS17475.1| PilT protein domain protein [Ochrobactrum anthropi ATCC 49188]
Length=127
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/124 (43%), Positives = 70/124 (57%), Gaps = 4/124 (3%)
Query 3 VDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFERLR 62
VDTSA++A+V E P A+ A ++SA TV E LIV R+ V + + L
Sbjct 4 VDTSALMAIVLNE-PKGEACMTAIERADELLISAGTVTEALIVAARRN--VGEEV-DALI 59
Query 63 SEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGNDFP 122
S +G + S TA A A+ R+GKG H A+LN+GDC +Y A PLL VG+DF
Sbjct 60 SGLGFEIVSVTAASARRVANAYARWGKGIHPASLNYGDCFSYEVAHEHGCPLLYVGDDFV 119
Query 123 QTDL 126
QTDL
Sbjct 120 QTDL 123
>gi|15607764|ref|NP_215138.1| hypothetical protein Rv0624 [Mycobacterium tuberculosis H37Rv]
gi|15840025|ref|NP_335062.1| hypothetical protein MT0652 [Mycobacterium tuberculosis CDC1551]
gi|31791806|ref|NP_854299.1| hypothetical protein Mb0640 [Mycobacterium bovis AF2122/97]
80 more sequence titles
Length=131
Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/126 (39%), Positives = 70/126 (56%), Gaps = 1/126 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++DTSA+VA++ E P A AA+ H +MS + E +V+ AR G +
Sbjct 1 MVIDTSALVAMLSDE-PDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDL 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
+ + + A+ A A + A+ YGKGRHRA LN+GDC +Y A++ QPLL G D
Sbjct 60 WLHRAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGED 119
Query 121 FPQTDL 126
F TD+
Sbjct 120 FQHTDI 125
>gi|296444600|ref|ZP_06886564.1| PilT protein domain protein [Methylosinus trichosporium OB3b]
gi|296257868|gb|EFH04931.1| PilT protein domain protein [Methylosinus trichosporium OB3b]
Length=127
Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/125 (43%), Positives = 70/125 (56%), Gaps = 4/125 (3%)
Query 3 VDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFERLR 62
VDTSA++A+V GE A AAL+ + V+SA T+AE LIV R+ RL
Sbjct 4 VDTSALMAIVLGE-AEADACIAALSTKDALVISAGTLAEALIVAGRRN---VGDEMARLI 59
Query 63 SEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGNDFP 122
E+G V T A A+ ++GKG H A+LNFGDC Y AQ LL +G+DF
Sbjct 60 DELGFEVVPVTTASARRVALAYRKWGKGVHPASLNFGDCFAYVAAQERGCGLLYIGDDFR 119
Query 123 QTDLE 127
+TD+E
Sbjct 120 RTDVE 124
>gi|118472447|ref|YP_885674.1| PilT domain-containing protein [Mycobacterium smegmatis str.
MC2 155]
gi|118173734|gb|ABK74630.1| PIN domain protein [Mycobacterium smegmatis str. MC2 155]
Length=129
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/126 (39%), Positives = 72/126 (58%), Gaps = 1/126 (0%)
Query 1 MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER 60
M++DTSA+VA++ E P A L+ A+A MS + E IV+ +R G +
Sbjct 1 MVIDTSALVAILTDE-PDAELLEGAVADDPVRTMSTASYLETAIVIESRFGEPGGRELDL 59
Query 61 LRSEIGLSVSSFTAEHAAATQRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGND 120
+++ + A+ A A + A+ RYGKGRHRA LN+GDC +YA A++ QPLL G
Sbjct 60 WLHRASVALVAVDADQADAARLAYRRYGKGRHRAGLNYGDCFSYALAKVSGQPLLFKGEA 119
Query 121 FPQTDL 126
F TD+
Sbjct 120 FRLTDV 125
Lambda K H
0.323 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131443546824
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40