BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1988
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609125|ref|NP_216504.1| methyltransferase [Mycobacterium tu... 345 1e-93
gi|254232160|ref|ZP_04925487.1| hypothetical protein TBCG_01938 ... 291 3e-77
gi|26224788|gb|AAN76364.1| putative adenine rRNA methylase [Myco... 280 5e-74
gi|339294915|gb|AEJ47026.1| methyltransferase [Mycobacterium tub... 279 1e-73
gi|121637871|ref|YP_978094.1| putative methyltransferase [Mycoba... 242 2e-62
gi|284033869|ref|YP_003383800.1| ribosomal RNA adenine methylase... 190 9e-47
gi|226876725|gb|ACO89583.1| Erm(41) [Mycobacterium bolletii] 182 2e-44
gi|197112116|gb|ACH43061.1| ribosome methyltransferase [Mycobact... 182 2e-44
gi|226876711|gb|ACO89576.1| Erm(41) [Mycobacterium abscessus] 182 2e-44
gi|197112119|gb|ACH43063.1| ribosome methyltransferase [Mycobact... 182 2e-44
gi|197112113|gb|ACH43059.1| ribosome methyltransferase [Mycobact... 182 2e-44
gi|169629383|ref|YP_001703032.1| methyltransferase [Mycobacteriu... 182 3e-44
gi|226876715|gb|ACO89578.1| Erm(41) [Mycobacterium abscessus] 181 3e-44
gi|226876713|gb|ACO89577.1| Erm(41) [Mycobacterium abscessus] 179 1e-43
gi|196127903|gb|ACG70217.1| Erm(41) [Mycobacterium abscessus] >g... 176 1e-42
gi|157965686|gb|ABW06859.1| Erm(41) methylase [Mycobacterium abs... 141 3e-32
gi|229820415|ref|YP_002881941.1| ribosomal RNA adenine methylase... 125 2e-27
gi|312109334|ref|YP_003987650.1| rRNA (adenine-N(6)-)-methyltran... 102 2e-20
gi|304435942|gb|ADM33800.1| erythromycin ribosome methyltransfer... 92.0 3e-17
gi|284041860|ref|YP_003392200.1| rRNA (adenine-N(6)-)-methyltran... 90.9 7e-17
gi|325104371|ref|YP_004274025.1| rRNA (adenine-N(6)-)-methyltran... 90.5 9e-17
gi|1169553|sp|P45438.1|ERMK_BACLI RecName: Full=rRNA adenine N-6... 90.1 1e-16
gi|282877321|ref|ZP_06286149.1| ribosomal RNA adenine dimethylas... 89.4 2e-16
gi|20094370|ref|NP_614217.1| dimethyladenosine transferase (rRNA... 87.8 6e-16
gi|1169552|sp|Q03986.1|ERMD_BACLI RecName: Full=rRNA adenine N-6... 87.4 8e-16
gi|730032|sp|Q04720.1|ERMJ_BACAN RecName: Full=rRNA adenine N-6-... 87.4 8e-16
gi|304435944|gb|ADM33801.1| erythromycin ribosome methyltransfer... 87.0 1e-15
gi|15612943|ref|NP_241246.1| rRNA adenine N-6-methyltransferase ... 86.7 1e-15
gi|294776564|ref|ZP_06742037.1| ribosomal RNA adenine dimethylas... 85.9 2e-15
gi|15072727|emb|CAC47934.1| rRNA adenine-N6 methyltransferase [B... 85.9 2e-15
gi|400267|sp|Q02607.1|ERMU_BACFR RecName: Full=rRNA adenine N-6-... 85.9 2e-15
gi|299148760|ref|ZP_07041822.1| rRNA adenine N-6-methyltransfera... 85.9 2e-15
gi|57234784|ref|YP_181149.1| dimethyladenosine transferase [Deha... 85.1 3e-15
gi|54024690|ref|YP_118932.1| putative ribosomal RNA adenine N-6-... 85.1 3e-15
gi|134297956|ref|YP_001111452.1| dimethyladenosine transferase [... 85.1 4e-15
gi|307091896|gb|ADN28283.1| putative rRNA methyltransferase [unc... 85.1 4e-15
gi|221633286|ref|YP_002522511.1| dimethyladenosine transferase [... 84.7 5e-15
gi|307091972|gb|ADN28321.1| putative rRNA methyltransferase [unc... 84.7 5e-15
gi|313150007|ref|ZP_07812200.1| conserved hypothetical protein [... 84.7 6e-15
gi|307091998|gb|ADN28334.1| putative rRNA methyltransferase [unc... 84.7 6e-15
gi|7715978|gb|AAF68230.1|AF203972_3 ErmF [Shuttle vector pBA] 84.3 6e-15
gi|127196|sp|P10337.1|ERMF_BACFR RecName: Full=rRNA adenine N-6-... 84.3 6e-15
gi|56965270|ref|YP_177002.1| rRNA adenine N-6-methyltransferase ... 84.3 7e-15
gi|228470626|ref|ZP_04055482.1| rRNA adenine N-6-methyltransfera... 84.0 8e-15
gi|330997743|ref|ZP_08321583.1| ribosomal RNA adenine dimethylas... 84.0 9e-15
gi|265755244|ref|ZP_06090014.1| clindamycin resistance determina... 83.6 1e-14
gi|297735070|emb|CBI17432.3| unnamed protein product [Vitis vini... 83.6 1e-14
gi|225431251|ref|XP_002267827.1| PREDICTED: hypothetical protein... 83.6 1e-14
gi|255636797|gb|ACU18732.1| unknown [Glycine max] 83.2 2e-14
gi|227528872|ref|ZP_03958921.1| dimethyladenosine transferase [L... 83.2 2e-14
>gi|15609125|ref|NP_216504.1| methyltransferase [Mycobacterium tuberculosis H37Rv]
gi|15841466|ref|NP_336503.1| rRNA adenine N-6-methyltransferase, putative [Mycobacterium tuberculosis
CDC1551]
gi|31793167|ref|NP_855660.1| methyltransferase [Mycobacterium bovis AF2122/97]
74 more sequence titles
Length=179
Score = 345 bits (886), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 178/179 (99%), Positives = 179/179 (100%), Gaps = 0/179 (0%)
Query 1 VSALGRSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAV 60
+SALGRSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAV
Sbjct 1 MSALGRSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAV 60
Query 61 ELHPRRVGVLRERFPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLV 120
ELHPRRVGVLRERFPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLV
Sbjct 61 ELHPRRVGVLRERFPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLV 120
Query 121 AADLVLQRALVCKFASRNARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRRKCGDWQGR 179
AADLVLQRALVCKFASRNARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRRKCGDWQGR
Sbjct 121 AADLVLQRALVCKFASRNARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRRKCGDWQGR 179
>gi|254232160|ref|ZP_04925487.1| hypothetical protein TBCG_01938 [Mycobacterium tuberculosis C]
gi|124601219|gb|EAY60229.1| hypothetical protein TBCG_01938 [Mycobacterium tuberculosis C]
Length=150
Score = 291 bits (744), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 149/150 (99%), Positives = 150/150 (100%), Gaps = 0/150 (0%)
Query 30 VRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRL 89
+RPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRL
Sbjct 1 MRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRL 60
Query 90 PGRPFRVVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFASRNARRFTLTVGLM 149
PGRPFRVVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFASRNARRFTLTVGLM
Sbjct 61 PGRPFRVVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFASRNARRFTLTVGLM 120
Query 150 LPRRAFLPPPHVDSAVLVVRRRKCGDWQGR 179
LPRRAFLPPPHVDSAVLVVRRRKCGDWQGR
Sbjct 121 LPRRAFLPPPHVDSAVLVVRRRKCGDWQGR 150
>gi|26224788|gb|AAN76364.1| putative adenine rRNA methylase [Mycobacterium microti]
Length=146
Score = 280 bits (717), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 143/146 (98%), Positives = 146/146 (100%), Gaps = 0/146 (0%)
Query 31 RPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRLP 90
RPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRLP
Sbjct 1 RPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRLP 60
Query 91 GRPFRVVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFASRNARRFTLTVGLML 150
GRPFRVVANPPYGISSRLLRT++APNSGLVAADLV+QRALVCKFASRNARRFTLTVGLML
Sbjct 61 GRPFRVVANPPYGISSRLLRTVVAPNSGLVAADLVVQRALVCKFASRNARRFTLTVGLML 120
Query 151 PRRAFLPPPHVDSAVLVVRRRKCGDW 176
PRRAFLPPPHVDSAVLVVRRRKCGDW
Sbjct 121 PRRAFLPPPHVDSAVLVVRRRKCGDW 146
>gi|339294915|gb|AEJ47026.1| methyltransferase [Mycobacterium tuberculosis CCDC5079]
gi|339298538|gb|AEJ50648.1| methyltransferase [Mycobacterium tuberculosis CCDC5180]
Length=144
Score = 279 bits (714), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/144 (99%), Positives = 144/144 (100%), Gaps = 0/144 (0%)
Query 36 VFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRLPGRPFR 95
+FDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRLPGRPFR
Sbjct 1 MFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRLPGRPFR 60
Query 96 VVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFASRNARRFTLTVGLMLPRRAF 155
VVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFASRNARRFTLTVGLMLPRRAF
Sbjct 61 VVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFASRNARRFTLTVGLMLPRRAF 120
Query 156 LPPPHVDSAVLVVRRRKCGDWQGR 179
LPPPHVDSAVLVVRRRKCGDWQGR
Sbjct 121 LPPPHVDSAVLVVRRRKCGDWQGR 144
>gi|121637871|ref|YP_978094.1| putative methyltransferase [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|121493518|emb|CAL71992.1| Probable methyltransferase [Mycobacterium bovis BCG str. Pasteur
1173P2]
Length=174
Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/123 (100%), Positives = 123/123 (100%), Gaps = 0/123 (0%)
Query 57 VVAVELHPRRVGVLRERFPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPN 116
VVAVELHPRRVGVLRERFPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPN
Sbjct 52 VVAVELHPRRVGVLRERFPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPN 111
Query 117 SGLVAADLVLQRALVCKFASRNARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRRKCGDW 176
SGLVAADLVLQRALVCKFASRNARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRRKCGDW
Sbjct 112 SGLVAADLVLQRALVCKFASRNARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRRKCGDW 171
Query 177 QGR 179
QGR
Sbjct 172 QGR 174
>gi|284033869|ref|YP_003383800.1| ribosomal RNA adenine methylase transferase [Kribbella flavida
DSM 17836]
gi|283813162|gb|ADB35001.1| ribosomal RNA adenine methylase transferase [Kribbella flavida
DSM 17836]
Length=182
Score = 190 bits (482), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 106/179 (60%), Positives = 130/179 (73%), Gaps = 9/179 (5%)
Query 1 VSALGRSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAV 60
+S G +R AWGWH L WA RVV AA VRPG+LV D+GAG GALTA LVRAGA VVAV
Sbjct 1 MSGSGPARGAWGWHPLDSRWAQRVVDAAGVRPGDLVLDVGAGLGALTAPLVRAGADVVAV 60
Query 61 ELHPRRVGVLRERFPG--ITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSG 118
ELHP R LR RF + VV ADAA +RLP RPFRVV++PPYGIS+ LL+ LL+P S
Sbjct 61 ELHPHRADRLRRRFADAPVRVVRADAADLRLPTRPFRVVSSPPYGISTELLKRLLSPRSR 120
Query 119 LVAADLVLQRALVCKFA-------SRNARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRR 170
LV+ADLVLQR +V ++ +R +R + ++G+ LPR+AF PPPHVDSAVL ++R
Sbjct 121 LVSADLVLQRQVVNRWVDGRAPGRARWSRYYDTSIGIRLPRKAFTPPPHVDSAVLRIQR 179
>gi|226876725|gb|ACO89583.1| Erm(41) [Mycobacterium bolletii]
Length=173
Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/169 (61%), Positives = 122/169 (73%), Gaps = 3/169 (1%)
Query 6 RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR 65
RSRR WGW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP
Sbjct 5 RSRRQWGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG 64
Query 66 RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD 123
R LR RF + V AD + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct 65 RARHLRSRFAEEDVRVAEADLLAFRWPRRPFRVVASPPYHVTSALIRSLLTPESRLLAAD 124
Query 124 LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
LVLQR +V K A R R +TL G+ LPR AF PP VDS+VLV+RRR
Sbjct 125 LVLQRGVVHKHAKRAPVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR 173
>gi|197112116|gb|ACH43061.1| ribosome methyltransferase [Mycobacterium abscessus]
Length=173
Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/169 (61%), Positives = 121/169 (72%), Gaps = 3/169 (1%)
Query 6 RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR 65
RSRR WGW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP
Sbjct 5 RSRRQWGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG 64
Query 66 RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD 123
R LR RF + V AD + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct 65 RARHLRSRFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPQSRLLAAD 124
Query 124 LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
LVLQR V K A R R +TL G+ LPR AF PP VDS+VLV+RRR
Sbjct 125 LVLQRGAVHKHAKRAPVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR 173
>gi|226876711|gb|ACO89576.1| Erm(41) [Mycobacterium abscessus]
Length=173
Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/169 (61%), Positives = 121/169 (72%), Gaps = 3/169 (1%)
Query 6 RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR 65
RSRR WGW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP
Sbjct 5 RSRRQWGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG 64
Query 66 RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD 123
R LR RF + V AD + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct 65 RARHLRSRFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPESRLLAAD 124
Query 124 LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
LVLQR V K A R R +TL G+ LPR AF PP VDS+VLV+RRR
Sbjct 125 LVLQRGAVHKHAKRALVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR 173
>gi|197112119|gb|ACH43063.1| ribosome methyltransferase [Mycobacterium abscessus]
Length=173
Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/169 (61%), Positives = 121/169 (72%), Gaps = 3/169 (1%)
Query 6 RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR 65
RSRR WGW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP
Sbjct 5 RSRRQWGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG 64
Query 66 RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD 123
R LR RF + V AD + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct 65 RARHLRSRFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPESRLLAAD 124
Query 124 LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
LVLQR V K A R R +TL G+ LPR AF PP VDS+VLV+RRR
Sbjct 125 LVLQRGAVHKHAKRAPVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR 173
>gi|197112113|gb|ACH43059.1| ribosome methyltransferase [Mycobacterium abscessus]
Length=173
Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/169 (60%), Positives = 121/169 (72%), Gaps = 3/169 (1%)
Query 6 RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR 65
RSRR WGW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP
Sbjct 5 RSRRQWGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG 64
Query 66 RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD 123
R LR RF + + AD + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct 65 RARHLRSRFAEEDVRIAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPESRLLAAD 124
Query 124 LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
LVLQR V K A R R +TL G+ LPR AF PP VDS+VLV+RRR
Sbjct 125 LVLQRGAVHKHAKRALVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR 173
>gi|169629383|ref|YP_001703032.1| methyltransferase [Mycobacterium abscessus ATCC 19977]
gi|169241350|emb|CAM62378.1| Probable methyltransferase [Mycobacterium abscessus]
gi|196127896|gb|ACG70212.1| Erm(41) [Mycobacterium abscessus]
gi|196127900|gb|ACG70215.1| Erm(41) [Mycobacterium abscessus]
gi|197112122|gb|ACH43065.1| ribosome methyltransferase [Mycobacterium abscessus]
gi|226876709|gb|ACO89575.1| Erm(41) [Mycobacterium abscessus ATCC 19977]
Length=173
Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/169 (60%), Positives = 121/169 (72%), Gaps = 3/169 (1%)
Query 6 RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR 65
RSRR WGW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP
Sbjct 5 RSRRQWGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG 64
Query 66 RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD 123
R LR RF + + AD + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct 65 RARHLRSRFAEEDVRIAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPESRLLAAD 124
Query 124 LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
LVLQR V K A R R +TL G+ LPR AF PP VDS+VLV+RRR
Sbjct 125 LVLQRGAVHKHAKRAPVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR 173
>gi|226876715|gb|ACO89578.1| Erm(41) [Mycobacterium abscessus]
Length=173
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/169 (60%), Positives = 121/169 (72%), Gaps = 3/169 (1%)
Query 6 RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR 65
RSRR WGW+ + D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP
Sbjct 5 RSRRQWGWYPITDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG 64
Query 66 RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD 123
R LR RF + V AD + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct 65 RARHLRSRFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPESRLLAAD 124
Query 124 LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
LVLQR V K A R R +TL G+ LPR AF PP VDS+VLV+RRR
Sbjct 125 LVLQRGAVHKHAKRALVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR 173
>gi|226876713|gb|ACO89577.1| Erm(41) [Mycobacterium abscessus]
Length=173
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/169 (60%), Positives = 120/169 (72%), Gaps = 3/169 (1%)
Query 6 RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR 65
RS R WGW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP
Sbjct 5 RSGRQWGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG 64
Query 66 RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD 123
R LR RF + V AD + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct 65 RARHLRSRFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPESRLLAAD 124
Query 124 LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
LVLQR V K A R R +TL G+ LPR AF PP VDS+VLV+RRR
Sbjct 125 LVLQRGAVHKHAKRALVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR 173
>gi|196127903|gb|ACG70217.1| Erm(41) [Mycobacterium abscessus]
gi|197112128|gb|ACH43069.1| ribosome methyltransferase [Mycobacterium abscessus]
Length=173
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/169 (60%), Positives = 120/169 (72%), Gaps = 3/169 (1%)
Query 6 RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR 65
RSRR GW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP
Sbjct 5 RSRRQRGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG 64
Query 66 RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD 123
R LR RF + V AD + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct 65 RARHLRSRFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPESRLLAAD 124
Query 124 LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
LVLQR V K A R R +TL G+ LPR AF PP VDS+VLV+RRR
Sbjct 125 LVLQRGAVHKHAKRAPVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR 173
>gi|157965686|gb|ABW06859.1| Erm(41) methylase [Mycobacterium abscessus]
Length=138
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/138 (61%), Positives = 97/138 (71%), Gaps = 3/138 (2%)
Query 37 FDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERF--PGITVVHADAASIRLPGRPF 94
D+GAG GALTAHLV AGARV+AVELHP R LR RF + V AD + R P RPF
Sbjct 1 MDLGAGHGALTAHLVAAGARVLAVELHPGRARHLRSRFAEEDVRVAEADLLAFRWPRRPF 60
Query 95 RVVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFASRN-ARRFTLTVGLMLPRR 153
RVVA+PPY ++S L+R+LL P S L+AADLVLQR V K A R R +TL G+ LPR
Sbjct 61 RVVASPPYQVTSALIRSLLTPESRLLAADLVLQRGAVHKHAKRAPVRHWTLRAGITLPRS 120
Query 154 AFLPPPHVDSAVLVVRRR 171
AF PP VDS+VLV+RRR
Sbjct 121 AFHHPPQVDSSVLVIRRR 138
>gi|229820415|ref|YP_002881941.1| ribosomal RNA adenine methylase transferase [Beutenbergia cavernae
DSM 12333]
gi|229566328|gb|ACQ80179.1| ribosomal RNA adenine methylase transferase [Beutenbergia cavernae
DSM 12333]
Length=196
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/172 (48%), Positives = 105/172 (62%), Gaps = 7/172 (4%)
Query 5 GRSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHP 64
GRSR W + RL +WA+ +V A V G+ V D+GAG GALT LV GARV+A+E H
Sbjct 6 GRSR--WSYFRLSPDWASTLVDRAGVEHGDTVLDLGAGAGALTGPLVDRGARVIALERHA 63
Query 65 RRVGVLRERFPG--ITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAA 122
RV LRERF G ++VV AD +RLP RPFRVVANPP+ ++ ++ LL LV A
Sbjct 64 GRVQRLRERFDGRSVSVVEADIRDLRLPARPFRVVANPPFHLARPIVADLLGARL-LVRA 122
Query 123 DLVLQRALVCKFASRNAR--RFTLTVGLMLPRRAFLPPPHVDSAVLVVRRRK 172
DLVL+ A +A R+ + L +PR AF P P VD+ VL +RRR
Sbjct 123 DLVLRHDTARNLARAHADDPRWVVETTLAIPRTAFEPSPSVDALVLTLRRRS 174
>gi|312109334|ref|YP_003987650.1| rRNA (adenine-N(6)-)-methyltransferase [Geobacillus sp. Y4.1MC1]
gi|311214435|gb|ADP73039.1| rRNA (adenine-N(6)-)-methyltransferase [Geobacillus sp. Y4.1MC1]
Length=284
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/175 (35%), Positives = 94/175 (54%), Gaps = 14/175 (8%)
Query 12 GWHRLHDE-WAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVL 70
G H LH++ ++ A + + V D+GAG+GALT + +V+AVE PR V +L
Sbjct 22 GQHLLHNKRIINDLIQIANLTSNDTVLDLGAGKGALTFPVAEKAGKVIAVEYDPRFVEIL 81
Query 71 RER---FPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLL-APNSGLVAADLVL 126
+++ +P I V+ D +RLP PF VVA PY I++ +++ LL P + L A LV+
Sbjct 82 KKKAEAYPNIKVIQQDILKLRLPKEPFIVVAGIPYAITTPIMKMLLHQPANSLQRAVLVM 141
Query 127 QRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRRK 172
++ +F S F L + R F PPP VDSA+L++RR+K
Sbjct 142 EKGAAKRFTSYPITNPLILKWRMWFDLGYVREISRENFSPPPKVDSAILIIRRKK 196
>gi|304435942|gb|ADM33800.1| erythromycin ribosome methyltransferase Erm41 [Mycobacterium
abscessus ATCC 19977]
gi|304435946|gb|ADM33802.1| erythromycin ribosome methyltransferase Erm41 [Mycobacterium
bolletii]
Length=78
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/69 (69%), Positives = 54/69 (79%), Gaps = 0/69 (0%)
Query 6 RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR 65
RSRR WGW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP
Sbjct 5 RSRRQWGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG 64
Query 66 RVGVLRERF 74
R LR RF
Sbjct 65 RARHLRSRF 73
>gi|284041860|ref|YP_003392200.1| rRNA (adenine-N(6)-)-methyltransferase [Conexibacter woesei DSM
14684]
gi|283946081|gb|ADB48825.1| rRNA (adenine-N(6)-)-methyltransferase [Conexibacter woesei DSM
14684]
Length=256
Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/149 (43%), Positives = 82/149 (56%), Gaps = 10/149 (6%)
Query 34 ELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRER----FPGITVVHADAASIRL 89
++V D+GAG GA+TA L ARV+AVE P LR R + + VV DA ++
Sbjct 38 DVVVDLGAGRGAVTAQLAPRAARVLAVERDPAWAHELRTRAAREWRNVEVVEGDARAVAF 97
Query 90 PGRPFRVVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALV------CKFASRNARRFT 143
P PF+VVAN P+ + L+R LLA GL A +VLQ +F + A F
Sbjct 98 PSAPFKVVANLPFNAGTGLVRRLLADGHGLAGAAVVLQLEAARRLAGGGRFGATWAPWFE 157
Query 144 LTVGLMLPRRAFLPPPHVDSAVLVVRRRK 172
L VG +P RAF P P VD+AVL VR R+
Sbjct 158 LAVGARIPARAFRPVPRVDAAVLTVRARQ 186
>gi|325104371|ref|YP_004274025.1| rRNA (adenine-N(6)-)-methyltransferase [Pedobacter saltans DSM
12145]
gi|324973219|gb|ADY52203.1| rRNA (adenine-N(6)-)-methyltransferase [Pedobacter saltans DSM
12145]
Length=270
Score = 90.5 bits (223), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/169 (31%), Positives = 86/169 (51%), Gaps = 23/169 (13%)
Query 28 AAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERF---PGITVVHADA 84
A ++ G++V DIGAG G LT HLV+ V+A+E R V LR +F +T++ D
Sbjct 29 AEIQKGDVVLDIGAGSGFLTVHLVKHSTNVIAIENDNRLVSELRSKFRVNKNVTIIGLDY 88
Query 85 ASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFAS-------R 137
+P + F+VV+N P+ ++S +L++L+ N + Q L+ +F S +
Sbjct 89 RKFSVPQKNFKVVSNIPFALTSEILKSLMYTN-----IEFFKQGCLIMQFESAKKLVRKK 143
Query 138 NARRFTLTVGLMLPRR--------AFLPPPHVDSAVLVVRRRKCGDWQG 178
+T+ R +F+PPP V SA++ + ++KC D G
Sbjct 144 YFNPYTVFYHTFFEVRFIYEINPESFMPPPTVKSALVKIGKKKCTDNIG 192
>gi|1169553|sp|P45438.1|ERMK_BACLI RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin
resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin
B resistance protein
gi|143195|gb|AAA22595.1| erythromycin-inducible 23S ribosomal RNA methylase [Bacillus
licheniformis]
Length=287
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/175 (31%), Positives = 92/175 (53%), Gaps = 14/175 (8%)
Query 12 GWHRLHDE-WAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVL 70
G H +H++ +V A + + V ++GAG+GALT L + +V+AVE + V +L
Sbjct 23 GQHLMHNKKLIEEIVDRANISIDDTVLELGAGKGALTTMLSQKAGKVLAVENDSKFVAIL 82
Query 71 RER---FPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLL-APNSGLVAADLVL 126
+ P ++H D I LP F VV+N PY I++ +++ LL P SG +V+
Sbjct 83 TRKTAQHPNTKIIHQDIMKIHLPKEKFVVVSNIPYAITTPIMKMLLNNPASGFQKGIIVM 142
Query 127 QRALVCKFASRNAR-------RFTLTVGLM--LPRRAFLPPPHVDSAVLVVRRRK 172
++ +F S+ + R +G++ + + F PPP VDSA++ + R+K
Sbjct 143 EKGAAKRFTSKFIKNSYVLAWRMWFDIGIVREISKEHFSPPPKVDSAMVRITRKK 197
>gi|282877321|ref|ZP_06286149.1| ribosomal RNA adenine dimethylase family protein [Prevotella
buccalis ATCC 35310]
gi|288926425|ref|ZP_06420346.1| rRNA adenine N-6-methyltransferase [Prevotella buccae D17]
gi|281300560|gb|EFA92901.1| ribosomal RNA adenine dimethylase family protein [Prevotella
buccalis ATCC 35310]
gi|288336798|gb|EFC75163.1| rRNA adenine N-6-methyltransferase [Prevotella buccae D17]
Length=266
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/178 (30%), Positives = 86/178 (49%), Gaps = 14/178 (7%)
Query 9 RAWGWHRLHDE-WAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV 67
R G H D+ + A + + V DIGAG+G LT HLVR ++A+E +
Sbjct 9 RYTGQHFTIDKVLIDDAIKIAKINESDTVIDIGAGKGFLTVHLVRQCTNIIAIENDKSLL 68
Query 68 GVLRERFPGIT---VVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPN-SGLVAAD 123
+L+ +F T ++ D +P R F+VV+N P+ I+S +L++L+ + +
Sbjct 69 SILKNKFSNNTNVKIIDCDFRCYTIPKRNFKVVSNIPFRITSEILKSLMFDSVEHFMGGS 128
Query 124 LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRRK 172
L++Q K S+ F L + + +FLPPP V SA+L + R+K
Sbjct 129 LIMQLEPAQKLFSKKVFNPYIVFYHTFFDLKLMYEISHESFLPPPKVKSALLKIERKK 186
>gi|20094370|ref|NP_614217.1| dimethyladenosine transferase (rRNA methylase) [Methanopyrus
kandleri AV19]
gi|27151577|sp|Q8TWU7.1|RSMA_METKA RecName: Full=Probable ribosomal RNA small subunit methyltransferase
A; AltName: Full=16S rRNA dimethyladenosine transferase;
AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
dimethyltransferase
gi|19887438|gb|AAM02147.1| Dimethyladenosine transferase (rRNA methylase) [Methanopyrus
kandleri AV19]
Length=278
Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/177 (37%), Positives = 92/177 (52%), Gaps = 18/177 (10%)
Query 6 RSRRAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHP 64
R RR G H + D+ +V AA VR ++V +IG G G LT +L+ +V+AVEL
Sbjct 17 RPRRRLGQHFMVDDNILEFMVEAAEVREDDIVLEIGPGPGLLTRYLMTRAGQVIAVELDG 76
Query 65 RRVGVLRERF---PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVA 121
R V +L+ P + +V AD +P +VVAN PY ISS + LL + +
Sbjct 77 RMVEILKRELGEAPNLEIVRADFLEYDVPDDVNKVVANIPYNISSPITFKLLELD--IDV 134
Query 122 ADLVLQRA----LVCKFASRNARRFTLTVGLM--------LPRRAFLPPPHVDSAVL 166
A L QR +V + S+ R T+ V L+ +PRRAF+PPP V S+V+
Sbjct 135 AVLTYQREFAERMVAEPGSKKYSRLTVMVNLLADVELLRGVPRRAFIPPPRVGSSVV 191
>gi|1169552|sp|Q03986.1|ERMD_BACLI RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin
resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin
B resistance protein
gi|143201|gb|AAA22599.1| macrolide-lincosamide-streptogramin B resistance methylase [Bacillus
licheniformis]
Length=287
Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/182 (30%), Positives = 93/182 (52%), Gaps = 14/182 (7%)
Query 5 GRSRRAWGWHRLHDE-WAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELH 63
G S G H +H++ +V A + + V ++GAG+GALT L + +V+AVE
Sbjct 16 GESPNFSGQHLMHNKKLIEEIVDRANISIDDTVLELGAGKGALTTVLSQKAGKVLAVEND 75
Query 64 PRRVGVLRER---FPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLL-APNSGL 119
+ V +L + ++H D I LP F VV+N PY I++ +++ LL P SG
Sbjct 76 SKFVDILTRKTAQHSNTKIIHQDIMKIHLPKEKFVVVSNIPYAITTPIMKMLLNNPASGF 135
Query 120 VAADLVLQRALVCKFASRNAR-------RFTLTVGLM--LPRRAFLPPPHVDSAVLVVRR 170
+V+++ +F S+ + R +G++ + + F PPP VDSA++ + R
Sbjct 136 QKGIIVMEKGAAKRFTSKFIKNSYVLAWRMWFDIGIVREISKEHFSPPPKVDSAMVRITR 195
Query 171 RK 172
+K
Sbjct 196 KK 197
>gi|730032|sp|Q04720.1|ERMJ_BACAN RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin
resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin
B resistance protein
gi|143198|gb|AAA22597.1| rRNA methyltransferase [Bacillus anthracis]
Length=287
Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/182 (30%), Positives = 93/182 (52%), Gaps = 14/182 (7%)
Query 5 GRSRRAWGWHRLHDE-WAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELH 63
G S G H +H++ +V A + + V ++GAG+GALT L + +V+AVE
Sbjct 16 GESPNFSGQHLMHNKKLIEEIVDRANISIDDTVLELGAGKGALTTVLSQKAGKVLAVEND 75
Query 64 PRRVGVLRER---FPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLL-APNSGL 119
+ V +L + ++H D I LP F VV+N PY I++ +++ LL P SG
Sbjct 76 SKFVDILTRKTAQHSNTKIIHQDIMKIHLPKEKFVVVSNIPYAITTPIMKMLLNNPASGF 135
Query 120 VAADLVLQRALVCKFASRNAR-------RFTLTVGLM--LPRRAFLPPPHVDSAVLVVRR 170
+V+++ +F S+ + R +G++ + + F PPP VDSA++ + R
Sbjct 136 QKGIIVMEKGAAKRFTSKFIKNSYVLAWRMWFDIGIVREISKEHFSPPPKVDSAMVRITR 195
Query 171 RK 172
+K
Sbjct 196 KK 197
>gi|304435944|gb|ADM33801.1| erythromycin ribosome methyltransferase Erm41 [Mycobacterium
abscessus]
Length=78
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/69 (67%), Positives = 53/69 (77%), Gaps = 0/69 (0%)
Query 6 RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR 65
RSRR GW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP
Sbjct 5 RSRRQRGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG 64
Query 66 RVGVLRERF 74
R LR RF
Sbjct 65 RARHLRSRF 73
>gi|15612943|ref|NP_241246.1| rRNA adenine N-6-methyltransferase [Bacillus halodurans C-125]
gi|5822819|dbj|BAA83962.1| ERMK [Bacillus halodurans]
gi|10172993|dbj|BAB04099.1| rRNA adenine N-6-methyltransferase [Bacillus halodurans C-125]
Length=284
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/174 (33%), Positives = 88/174 (51%), Gaps = 14/174 (8%)
Query 12 GWHRLHDE-WAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVL 70
G H +H++ +V A V + V ++GAG+GALT L RV+AVE + VL
Sbjct 23 GQHLMHNKKLLQEIVDQAKVSKKDTVLELGAGKGALTTFLSERAKRVLAVEYDQTFIQVL 82
Query 71 RERF---PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLA-PNSGLVAADLVL 126
+ T++H D I LP F VV+N PY I++ +++ LL+ P SG +V+
Sbjct 83 NRKMAHAANTTIIHEDIMRIHLPKGEFVVVSNIPYSITTPIMKKLLSNPVSGFQRGVIVM 142
Query 127 QRALVCKFAS---RNARR------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
++ +F S +NA F L + R F PPP VDSA++ + R+
Sbjct 143 EKGAAKRFTSPFIKNAYVLAWRMWFDLEYVKGISRECFSPPPKVDSAMVFISRK 196
>gi|294776564|ref|ZP_06742037.1| ribosomal RNA adenine dimethylase family protein [Bacteroides
vulgatus PC510]
gi|294449620|gb|EFG18147.1| ribosomal RNA adenine dimethylase family protein [Bacteroides
vulgatus PC510]
Length=261
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/177 (34%), Positives = 87/177 (50%), Gaps = 14/177 (7%)
Query 9 RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV 67
R G H D+ + + A + + V DIGAG+G LT HL+R VVA+E V
Sbjct 4 RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLRIANNVVAIENDTALV 63
Query 68 GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSG-LVAAD 123
LR+ F + VV D + +P PF+VV+N PYGI+S + + L+ + G +
Sbjct 64 EHLRKLFSDARNVQVVGCDFRNFEVPKFPFKVVSNIPYGITSDIFKILMFESLGNFLGGS 123
Query 124 LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
+VLQ K SR F L + + +FLPPP V SA+L ++R+
Sbjct 124 IVLQLEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFLPPPTVKSALLNIKRK 180
>gi|15072727|emb|CAC47934.1| rRNA adenine-N6 methyltransferase [Bacteroides thetaiotaomicron]
Length=266
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/177 (33%), Positives = 86/177 (49%), Gaps = 14/177 (7%)
Query 9 RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV 67
R G H D+ + + A + + V DIGAG+G LT HL++ VVA+E V
Sbjct 9 RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV 68
Query 68 GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPN-SGLVAAD 123
LR+ F + VV D + +P PF+VV+N PYGI+S + + L+ N +
Sbjct 69 EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFENLENFLGGS 128
Query 124 LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
+VLQ K SR F L + + +FLPPP V SA+L ++R+
Sbjct 129 IVLQFEPTQKLFSRKLYNPYTVFCHTFFDLKLVYEVGPESFLPPPTVKSALLNIKRK 185
>gi|400267|sp|Q02607.1|ERMU_BACFR RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin
resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin
B resistance protein
gi|143943|gb|AAA63165.1| methyltransferase [Bacteroides fragilis]
Length=266
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/177 (33%), Positives = 86/177 (49%), Gaps = 14/177 (7%)
Query 9 RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV 67
R G H D+ + + A + + V DIGAG+G LT HL++ VVA+E V
Sbjct 9 RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV 68
Query 68 GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPN-SGLVAAD 123
LR+ F + VV D + +P PF+VV+N PYGI+S + + L+ N +
Sbjct 69 EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFENLENFLGGS 128
Query 124 LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
+VLQ K SR F L + + +FLPPP V SA+L ++R+
Sbjct 129 IVLQFEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFLPPPTVKSALLNIKRK 185
>gi|299148760|ref|ZP_07041822.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_23]
gi|301311645|ref|ZP_07217571.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 20_3]
gi|313886992|ref|ZP_07820692.1| ribosomal RNA adenine dimethylase family protein [Porphyromonas
asaccharolytica PR426713P-I]
gi|298513521|gb|EFI37408.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_23]
gi|300830386|gb|EFK61030.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 20_3]
gi|312923518|gb|EFR34327.1| ribosomal RNA adenine dimethylase family protein [Porphyromonas
asaccharolytica PR426713P-I]
Length=266
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/177 (33%), Positives = 86/177 (49%), Gaps = 14/177 (7%)
Query 9 RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV 67
R G H D+ + + A + + V DIGAG+G LT HL++ VVA+E V
Sbjct 9 RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV 68
Query 68 GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPN-SGLVAAD 123
LR+ F + VV D + +P PF+VV+N PYGI+S + + L+ N +
Sbjct 69 EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFENLENFLGGS 128
Query 124 LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
+VLQ K SR F L + + +FLPPP V SA+L ++R+
Sbjct 129 IVLQFEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFLPPPTVKSALLNIKRK 185
>gi|57234784|ref|YP_181149.1| dimethyladenosine transferase [Dehalococcoides ethenogenes 195]
gi|119365020|sp|Q3Z9F0.1|RSMA_DEHE1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase;
AltName: Full=16S rRNA dimethyladenosine
transferase; AltName: Full=16S rRNA dimethylase; AltName:
Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase
gi|57225232|gb|AAW40289.1| dimethyladenosine transferase [Dehalococcoides ethenogenes 195]
Length=291
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/192 (30%), Positives = 96/192 (50%), Gaps = 19/192 (9%)
Query 6 RSRRAWGWHRLHDEWA-ARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHP 64
R+R+ G H L + +++ AA ++P + V ++G G G LT L++ +V+AVEL
Sbjct 29 RARKGLGQHFLISQGVLNKILLAADLKPTDTVIEVGPGLGVLTEELIKRAGQVIAVELDD 88
Query 65 RRVGVLRERF---PGITVVHADA-----ASIRLPGRPFRVVANPPYGISSRLLRTLLAPN 116
+ V L E+F P ++H+D A I P+++VAN PY I+S +LR L
Sbjct 89 KLVTALTEKFKAYPNFRIIHSDILKTSPAEILGQNIPYKLVANLPYYITSAVLRQFLEAE 148
Query 117 SGLVAADLVLQRALVCKFASRNARRFTLTVGL----------MLPRRAFLPPPHVDSAVL 166
+ +++Q+ + ++ LT+ + ++P AF PPP VDSA++
Sbjct 149 AKPELMVVMVQKEVAKNMVAQTGDMGLLTLSVRFYGNPSLVSVVPGGAFYPPPEVDSAIV 208
Query 167 VVRRRKCGDWQG 178
V + QG
Sbjct 209 KVAIPQAAIMQG 220
>gi|54024690|ref|YP_118932.1| putative ribosomal RNA adenine N-6-methyltransferase [Nocardia
farcinica IFM 10152]
gi|54016198|dbj|BAD57568.1| putative ribosomal RNA adenine N-6-methyltransferase [Nocardia
farcinica IFM 10152]
Length=269
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/166 (38%), Positives = 84/166 (51%), Gaps = 14/166 (8%)
Query 19 EWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERF---P 75
+ A R+V +A V G+LV +IG G+G LTA L+ RV+A E+ R L+ R+ P
Sbjct 26 DIARRIVRSAGVGAGDLVLEIGPGDGMLTAQLLGVAGRVLAYEIDARYAARLQARYAHDP 85
Query 76 GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFA 135
I H D LP PF VVAN P+G ++ ++R LA L +A L+ QR K
Sbjct 86 RIHCYHKDFRDAPLPDEPFGVVANVPFGSTTDIVRWCLAARQ-LTSATLLTQREFARKHT 144
Query 136 SRNARRFTLTV----------GLMLPRRAFLPPPHVDSAVLVVRRR 171
R LTV G + RR F P P VD A+L +RRR
Sbjct 145 GDYGRWSKLTVTHWPTTTMHLGARIDRRHFRPVPRVDGALLHLRRR 190
>gi|134297956|ref|YP_001111452.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1]
gi|134050656|gb|ABO48627.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1]
Length=293
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/197 (31%), Positives = 98/197 (50%), Gaps = 30/197 (15%)
Query 6 RSRRAWGWHRLHD-EWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHP 64
R R+A G + L D ++V+AA + PG+LVF+IG G G LT L R+ +V+AVE+
Sbjct 20 RVRKALGQNFLMDANIIDKIVNAAELTPGDLVFEIGPGLGVLTQRLARSAGKVIAVEIDK 79
Query 65 RRVGVLRER---FPGITVVHADAASIRLP--------------GRPFRVVANPPYGISSR 107
+ +L E F VVHADA + + F++VAN PY I++
Sbjct 80 NLLPILTETLTDFDNAQVVHADALKVDFDRLAAEHTEGGFGKGAKSFKLVANLPYYITTP 139
Query 108 LLRTLLAPNSGLVAADLVLQRALVCKF-ASRNARRF-TLTVGLM----------LPRRAF 155
+L LL +++Q+ + + AS + + +L++ + +P+ F
Sbjct 140 ILMHLLTSGFNFDCLVVMMQKEVAERLQASPGGKDYGSLSIAVQYYTVPEIVTRVPKTVF 199
Query 156 LPPPHVDSAVLVVRRRK 172
P P V+SAV+ + RRK
Sbjct 200 FPAPDVESAVIQLTRRK 216
>gi|307091896|gb|ADN28283.1| putative rRNA methyltransferase [uncultured bacterium]
Length=116
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/107 (52%), Positives = 65/107 (61%), Gaps = 7/107 (6%)
Query 27 AAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPG------ITVV 80
AA V GELVFD+GAG GALT L RAGARVV+VE P L R G + +V
Sbjct 10 AATVGAGELVFDLGAGTGALTIPLARAGARVVSVEADPTWADRLLGRLVGAGLSGNVELV 69
Query 81 HADAASIRLPGRPFRVVANPPYGISSRLLRTLLA-PNSGLVAADLVL 126
D + LP P+RVV+NPPYGI++ LLR LL P G ADL+L
Sbjct 70 VGDILDVPLPSEPYRVVSNPPYGITTALLRRLLERPERGPYRADLLL 116
>gi|221633286|ref|YP_002522511.1| dimethyladenosine transferase [Thermomicrobium roseum DSM 5159]
gi|221155685|gb|ACM04812.1| dimethyladenosine transferase [Thermomicrobium roseum DSM 5159]
Length=297
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/183 (39%), Positives = 92/183 (51%), Gaps = 17/183 (9%)
Query 6 RSRRAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHP 64
R R+A G H LHD R +V A + P LV +IG G G LT L R V+AVEL
Sbjct 37 RPRKALGQHFLHDRAIVRRIVETAQLPPDALVVEIGPGLGILTEELARWARSVIAVELDA 96
Query 65 RRVGVLRERFPGITV--VHADAASIRLPGR----PFRVVANPPYGISSRLLRTLLAPNSG 118
R L ERF G V VH DA + L P+ VVAN PY +++ +L LL +
Sbjct 97 RLAEQLAERFHGTNVRIVHGDALEVDLAALTGQCPYFVVANLPYNVATPILERLLTSDHP 156
Query 119 LVAADLVLQRALVCKFASRNARRFTLTVGLM---LPRR-------AFLPPPHVDSAVLVV 168
+++QR + + A+R L V + LPR AF PPP V+SAV+V+
Sbjct 157 PERLVVMVQREVAERMAARPPAMSYLGVLVQFFALPRVAFRIGPGAFTPPPKVESAVVVL 216
Query 169 RRR 171
RR
Sbjct 217 DRR 219
>gi|307091972|gb|ADN28321.1| putative rRNA methyltransferase [uncultured bacterium]
Length=114
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/105 (52%), Positives = 63/105 (60%), Gaps = 5/105 (4%)
Query 27 AAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPG----ITVVHA 82
AA V GELV D+GAG GALT L AGARVVAVE P L R G + VV
Sbjct 10 AATVTAGELVLDLGAGTGALTIPLAEAGARVVAVEADPVWAEKLAGRLAGSSLTVEVVAG 69
Query 83 DAASIRLPGRPFRVVANPPYGISSRLLRTLL-APNSGLVAADLVL 126
D ++ LP PFRV ANPP+G+++ LLR LL P G ADL+L
Sbjct 70 DILAVPLPSEPFRVAANPPFGVTTALLRRLLDQPERGPYQADLLL 114
>gi|313150007|ref|ZP_07812200.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|336410311|ref|ZP_08590791.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 2_1_56FAA]
gi|154893|gb|AAA27431.1| clindamycin resistance determinant (ermFS) [Bacteroides fragilis]
gi|6979874|gb|AAF34636.1| ErmF [Shuttle vector pHS17]
gi|313138774|gb|EFR56134.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|335945367|gb|EGN07180.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 2_1_56FAA]
Length=266
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/177 (33%), Positives = 87/177 (50%), Gaps = 14/177 (7%)
Query 9 RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV 67
R G H D+ + + A + + V DIGAG+G LT HL++ VVA+E V
Sbjct 9 RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV 68
Query 68 GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSG-LVAAD 123
LR+ F + VV D + +P PF+VV+N PYGI+S + + L+ + G +
Sbjct 69 EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFESLGNFLGGS 128
Query 124 LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
+VLQ K SR F L + + +FLPPP V SA+L ++R+
Sbjct 129 IVLQLEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFLPPPTVKSALLNIKRK 185
>gi|307091998|gb|ADN28334.1| putative rRNA methyltransferase [uncultured bacterium]
Length=114
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/105 (50%), Positives = 65/105 (62%), Gaps = 5/105 (4%)
Query 27 AAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHP----RRVGVLRERFPGITVVHA 82
AA V GELV D+GAG GALT + AGARVVAVE P + G L + + VV
Sbjct 10 AATVTAGELVLDLGAGTGALTVPMAEAGARVVAVEADPVWAEKLAGRLAKSGLTVEVVAG 69
Query 83 DAASIRLPGRPFRVVANPPYGISSRLLRTLL-APNSGLVAADLVL 126
D ++ LP P+RVVANPP+G+++ LLR LL P G ADL+L
Sbjct 70 DILAVPLPSEPYRVVANPPFGVTTALLRRLLDQPERGPYQADLLL 114
>gi|7715978|gb|AAF68230.1|AF203972_3 ErmF [Shuttle vector pBA]
Length=266
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/177 (33%), Positives = 87/177 (50%), Gaps = 14/177 (7%)
Query 9 RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV 67
R G H D+ + + A + + V DIGAG+G LT HL++ VVA+E V
Sbjct 9 RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV 68
Query 68 GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSG-LVAAD 123
LR+ F + VV D + +P PF+VV+N PYGI+S + + L+ + G +
Sbjct 69 EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFESLGNFLGGS 128
Query 124 LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
+VLQ K SR F L + + +FLPPP V SA+L ++R+
Sbjct 129 IVLQLEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFLPPPTVKSALLNIKRK 185
>gi|127196|sp|P10337.1|ERMF_BACFR RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin
resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin
B resistance protein
gi|150541|gb|AAA98217.1| macrolide-lincosamide-streptogramin B-resistance protein [Bacteroides
fragilis]
gi|154890|gb|AAA88675.1| macrolide-lincosamide-streptogramin-resistance protein [Bacteroides
fragilis]
gi|853782|emb|CAA60706.1| ermF [Bacteroides sp.]
gi|1016682|gb|AAB39962.1| rRNA methyltransferase [Cloning vector pFD288]
Length=266
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/177 (33%), Positives = 87/177 (50%), Gaps = 14/177 (7%)
Query 9 RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV 67
R G H D+ + + A + + V DIGAG+G LT HL++ VVA+E V
Sbjct 9 RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV 68
Query 68 GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSG-LVAAD 123
LR+ F + VV D + +P PF+VV+N PYGI+S + + L+ + G +
Sbjct 69 EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFESLGNFLGGS 128
Query 124 LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
+VLQ K SR F L + + +FLPPP V SA+L ++R+
Sbjct 129 IVLQLEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFLPPPTVKSALLNIKRK 185
>gi|56965270|ref|YP_177002.1| rRNA adenine N-6-methyltransferase [Bacillus clausii KSM-K16]
gi|56911514|dbj|BAD66041.1| rRNA adenine N-6-methyltransferase [Bacillus clausii KSM-K16]
Length=281
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/175 (31%), Positives = 92/175 (53%), Gaps = 14/175 (8%)
Query 12 GWHRLHDE-WAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVL 70
G H +H++ +V A V + V ++GAG+GALT L RV+AVE + V L
Sbjct 23 GQHFMHNKRLLKEIVDKADVSVRDTVLELGAGKGALTTILSERADRVLAVEFDQKCVEAL 82
Query 71 RERFPG---ITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLL-APNSGLVAADLVL 126
+ + G ++++H D + LP PF VV+N PY I++ +++ LL P + L +V+
Sbjct 83 QWKLVGSKNVSILHQDIMKVTLPTEPFVVVSNIPYAITTAIMKMLLNNPKNKLQRGAIVM 142
Query 127 QRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRRK 172
++ +F S + + F + + R AF PPP VDSA++ + R++
Sbjct 143 EKGAAKRFTSVSPKDAYVMAWHMWFDIHYERGISRSAFSPPPKVDSALVRIVRKQ 197
>gi|228470626|ref|ZP_04055482.1| rRNA adenine N-6-methyltransferase [Porphyromonas uenonis 60-3]
gi|288801882|ref|ZP_06407324.1| rRNA adenine N-6-methyltransferase [Prevotella melaninogenica
D18]
gi|299143035|ref|ZP_07036156.1| rRNA adenine N-6-methyltransferase [Prevotella oris C735]
gi|319641873|ref|ZP_07996549.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_40A]
gi|228307634|gb|EEK16613.1| rRNA adenine N-6-methyltransferase [Porphyromonas uenonis 60-3]
gi|288335924|gb|EFC74357.1| rRNA adenine N-6-methyltransferase [Prevotella melaninogenica
D18]
gi|298575486|gb|EFI47371.1| rRNA adenine N-6-methyltransferase [Prevotella oris C735]
gi|317386505|gb|EFV67408.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_40A]
Length=266
Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/177 (33%), Positives = 87/177 (50%), Gaps = 14/177 (7%)
Query 9 RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV 67
R G H D+ + + A + + V DIGAG+G LT HL++ VVA+E V
Sbjct 9 RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV 68
Query 68 GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSG-LVAAD 123
LR+ F + VV D + +P PF+VV+N PYGI+S + + L+ + G +
Sbjct 69 EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFESLGNFLGGS 128
Query 124 LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR 171
++LQ K SR F L + + +FLPPP V SA+L ++R+
Sbjct 129 IILQLEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFLPPPTVKSALLNIKRK 185
>gi|330997743|ref|ZP_08321583.1| ribosomal RNA adenine dimethylase family protein [Paraprevotella
xylaniphila YIT 11841]
gi|329569940|gb|EGG51696.1| ribosomal RNA adenine dimethylase family protein [Paraprevotella
xylaniphila YIT 11841]
Length=285
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/178 (33%), Positives = 87/178 (49%), Gaps = 14/178 (7%)
Query 9 RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV 67
R G H D+ + + A + + V DIGAG+G LT HL++ VVA+E V
Sbjct 28 RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV 87
Query 68 GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSG-LVAAD 123
LR+ F + VV D + +P PF+VV+N PYGI+S + + L+ + G +
Sbjct 88 EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFESLGNFLGGS 147
Query 124 LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRRK 172
+VLQ K SR F L + + +F PPP V SA+L ++R++
Sbjct 148 IVLQLEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFFPPPTVKSALLNIKRKQ 205
>gi|265755244|ref|ZP_06090014.1| clindamycin resistance determinant [Bacteroides sp. 3_1_33FAA]
gi|298482352|ref|ZP_07000538.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. D22]
gi|315919274|ref|ZP_07915514.1| clindamycin resistance determinant [Bacteroides sp. D2]
9 more sequence titles
Length=266
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/178 (33%), Positives = 87/178 (49%), Gaps = 14/178 (7%)
Query 9 RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV 67
R G H D+ + + A + + V DIGAG+G LT HL++ VVA+E V
Sbjct 9 RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV 68
Query 68 GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSG-LVAAD 123
LR+ F + VV D + +P PF+VV+N PYGI+S + + L+ + G +
Sbjct 69 EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFESLGNFLGGS 128
Query 124 LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRRK 172
+VLQ K SR F L + + +F PPP V SA+L ++R++
Sbjct 129 IVLQLEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFFPPPTVKSALLNIKRKQ 186
>gi|297735070|emb|CBI17432.3| unnamed protein product [Vitis vinifera]
Length=383
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 91/180 (51%), Gaps = 20/180 (11%)
Query 9 RAWGWHRLHD-EWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV 67
++WG H L + +V + ++P + V +IG G G LT L++A RVVAVEL R V
Sbjct 50 KSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQAAQRVVAVELDARMV 109
Query 68 GVLRERF------PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVA 121
+LR+R +TV+ DA P VVAN PYGISS L+ L+ + +
Sbjct 110 EILRKRVAEHGLEDQLTVICKDALKTDFPQFDL-VVANIPYGISSPLVAKLVFGANPFRS 168
Query 122 ADLVLQ----RALVCKFASRNARRFTLTVGLM--------LPRRAFLPPPHVDSAVLVVR 169
A L+LQ R L+ R + V L+ + +R FLP P VDS+V+ +R
Sbjct 169 ATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPKVDSSVVTIR 228
>gi|225431251|ref|XP_002267827.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length=383
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 91/180 (51%), Gaps = 20/180 (11%)
Query 9 RAWGWHRLHD-EWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV 67
++WG H L + +V + ++P + V +IG G G LT L++A RVVAVEL R V
Sbjct 50 KSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQAAQRVVAVELDARMV 109
Query 68 GVLRERF------PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVA 121
+LR+R +TV+ DA P VVAN PYGISS L+ L+ + +
Sbjct 110 EILRKRVAEHGLEDQLTVICKDALKTDFPQFDL-VVANIPYGISSPLVAKLVFGANPFRS 168
Query 122 ADLVLQ----RALVCKFASRNARRFTLTVGLM--------LPRRAFLPPPHVDSAVLVVR 169
A L+LQ R L+ R + V L+ + +R FLP P VDS+V+ +R
Sbjct 169 ATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPKVDSSVVTIR 228
>gi|255636797|gb|ACU18732.1| unknown [Glycine max]
Length=308
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/184 (34%), Positives = 89/184 (49%), Gaps = 22/184 (11%)
Query 9 RAWGWHRLHDEW-AARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV 67
++ G H L + +V A V+ +++ +IG G G LT L+ AG +V+A+E+ PR V
Sbjct 30 KSKGQHILKNPLLVDSIVEKAGVKSTDVILEIGPGTGNLTKKLLEAGKKVIAIEIDPRMV 89
Query 68 GVLRERFPG------ITVVHADAASIRLPGRPFRV-VANPPYGISSRLLRTLLAPNSGLV 120
L+ RF G +TV+ D LP F + VAN PY ISS L LL
Sbjct 90 LELQRRFQGTPHSNRLTVIQGDVLKTELPY--FDICVANIPYQISSPLTFKLLKHEPAFR 147
Query 121 AADLVLQRALVCKFASRNARRFT--LTVG----------LMLPRRAFLPPPHVDSAVLVV 168
AA ++ QR + ++ + LTV L + R F PPP VDS+V+ +
Sbjct 148 AAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLHARVFHLLKVGRNNFRPPPKVDSSVVRI 207
Query 169 RRRK 172
RK
Sbjct 208 EPRK 211
>gi|227528872|ref|ZP_03958921.1| dimethyladenosine transferase [Lactobacillus vaginalis ATCC 49540]
gi|227351195|gb|EEJ41486.1| dimethyladenosine transferase [Lactobacillus vaginalis ATCC 49540]
Length=297
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/192 (31%), Positives = 97/192 (51%), Gaps = 26/192 (13%)
Query 7 SRRAWGWHRLHD-EWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR 65
+++ +G + L D R+V AA V + V +IG G GALT L +A +VVAVE+
Sbjct 24 AKKGFGQNFLTDPAILQRIVEAAEVTDADNVIEIGPGIGALTEKLAQAAGQVVAVEIDQD 83
Query 66 RVGVLRER---FPGITVVHADAASIRL----------PGRPFRVVANPPYGISSRLLRTL 112
+ VL + + +TV++ D L P +P +VVAN PY I+S +L L
Sbjct 84 LIPVLEKTLAAYDNVTVINQDILRANLPELIQQQFTDPTKPIKVVANLPYYITSPILMNL 143
Query 113 LAPNSGLVAADLVLQRA----LVCKFASRNARRFTL--------TVGLMLPRRAFLPPPH 160
LA + +++Q+ L K ++ TL V + R +F+P P+
Sbjct 144 LASPVEWSSITVMMQKEVAQRLTAKPGTKQYGALTLAIEYQMDAEVAFNVSRHSFIPAPN 203
Query 161 VDSAVLVVRRRK 172
VDSA++V+++R+
Sbjct 204 VDSAIVVLKQRQ 215
Lambda K H
0.327 0.140 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 158760884352
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40