BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1988

Length=179
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609125|ref|NP_216504.1|  methyltransferase [Mycobacterium tu...   345    1e-93
gi|254232160|ref|ZP_04925487.1|  hypothetical protein TBCG_01938 ...   291    3e-77
gi|26224788|gb|AAN76364.1|  putative adenine rRNA methylase [Myco...   280    5e-74
gi|339294915|gb|AEJ47026.1|  methyltransferase [Mycobacterium tub...   279    1e-73
gi|121637871|ref|YP_978094.1|  putative methyltransferase [Mycoba...   242    2e-62
gi|284033869|ref|YP_003383800.1|  ribosomal RNA adenine methylase...   190    9e-47
gi|226876725|gb|ACO89583.1|  Erm(41) [Mycobacterium bolletii]          182    2e-44
gi|197112116|gb|ACH43061.1|  ribosome methyltransferase [Mycobact...   182    2e-44
gi|226876711|gb|ACO89576.1|  Erm(41) [Mycobacterium abscessus]         182    2e-44
gi|197112119|gb|ACH43063.1|  ribosome methyltransferase [Mycobact...   182    2e-44
gi|197112113|gb|ACH43059.1|  ribosome methyltransferase [Mycobact...   182    2e-44
gi|169629383|ref|YP_001703032.1|  methyltransferase [Mycobacteriu...   182    3e-44
gi|226876715|gb|ACO89578.1|  Erm(41) [Mycobacterium abscessus]         181    3e-44
gi|226876713|gb|ACO89577.1|  Erm(41) [Mycobacterium abscessus]         179    1e-43
gi|196127903|gb|ACG70217.1|  Erm(41) [Mycobacterium abscessus] >g...   176    1e-42
gi|157965686|gb|ABW06859.1|  Erm(41) methylase [Mycobacterium abs...   141    3e-32
gi|229820415|ref|YP_002881941.1|  ribosomal RNA adenine methylase...   125    2e-27
gi|312109334|ref|YP_003987650.1|  rRNA (adenine-N(6)-)-methyltran...   102    2e-20
gi|304435942|gb|ADM33800.1|  erythromycin ribosome methyltransfer...  92.0    3e-17
gi|284041860|ref|YP_003392200.1|  rRNA (adenine-N(6)-)-methyltran...  90.9    7e-17
gi|325104371|ref|YP_004274025.1|  rRNA (adenine-N(6)-)-methyltran...  90.5    9e-17
gi|1169553|sp|P45438.1|ERMK_BACLI  RecName: Full=rRNA adenine N-6...  90.1    1e-16
gi|282877321|ref|ZP_06286149.1|  ribosomal RNA adenine dimethylas...  89.4    2e-16
gi|20094370|ref|NP_614217.1|  dimethyladenosine transferase (rRNA...  87.8    6e-16
gi|1169552|sp|Q03986.1|ERMD_BACLI  RecName: Full=rRNA adenine N-6...  87.4    8e-16
gi|730032|sp|Q04720.1|ERMJ_BACAN  RecName: Full=rRNA adenine N-6-...  87.4    8e-16
gi|304435944|gb|ADM33801.1|  erythromycin ribosome methyltransfer...  87.0    1e-15
gi|15612943|ref|NP_241246.1|  rRNA adenine N-6-methyltransferase ...  86.7    1e-15
gi|294776564|ref|ZP_06742037.1|  ribosomal RNA adenine dimethylas...  85.9    2e-15
gi|15072727|emb|CAC47934.1|  rRNA adenine-N6 methyltransferase [B...  85.9    2e-15
gi|400267|sp|Q02607.1|ERMU_BACFR  RecName: Full=rRNA adenine N-6-...  85.9    2e-15
gi|299148760|ref|ZP_07041822.1|  rRNA adenine N-6-methyltransfera...  85.9    2e-15
gi|57234784|ref|YP_181149.1|  dimethyladenosine transferase [Deha...  85.1    3e-15
gi|54024690|ref|YP_118932.1|  putative ribosomal RNA adenine N-6-...  85.1    3e-15
gi|134297956|ref|YP_001111452.1|  dimethyladenosine transferase [...  85.1    4e-15
gi|307091896|gb|ADN28283.1|  putative rRNA methyltransferase [unc...  85.1    4e-15
gi|221633286|ref|YP_002522511.1|  dimethyladenosine transferase [...  84.7    5e-15
gi|307091972|gb|ADN28321.1|  putative rRNA methyltransferase [unc...  84.7    5e-15
gi|313150007|ref|ZP_07812200.1|  conserved hypothetical protein [...  84.7    6e-15
gi|307091998|gb|ADN28334.1|  putative rRNA methyltransferase [unc...  84.7    6e-15
gi|7715978|gb|AAF68230.1|AF203972_3  ErmF [Shuttle vector pBA]        84.3    6e-15
gi|127196|sp|P10337.1|ERMF_BACFR  RecName: Full=rRNA adenine N-6-...  84.3    6e-15
gi|56965270|ref|YP_177002.1|  rRNA adenine N-6-methyltransferase ...  84.3    7e-15
gi|228470626|ref|ZP_04055482.1|  rRNA adenine N-6-methyltransfera...  84.0    8e-15
gi|330997743|ref|ZP_08321583.1|  ribosomal RNA adenine dimethylas...  84.0    9e-15
gi|265755244|ref|ZP_06090014.1|  clindamycin resistance determina...  83.6    1e-14
gi|297735070|emb|CBI17432.3|  unnamed protein product [Vitis vini...  83.6    1e-14
gi|225431251|ref|XP_002267827.1|  PREDICTED: hypothetical protein...  83.6    1e-14
gi|255636797|gb|ACU18732.1|  unknown [Glycine max]                    83.2    2e-14
gi|227528872|ref|ZP_03958921.1|  dimethyladenosine transferase [L...  83.2    2e-14


>gi|15609125|ref|NP_216504.1| methyltransferase [Mycobacterium tuberculosis H37Rv]
 gi|15841466|ref|NP_336503.1| rRNA adenine N-6-methyltransferase, putative [Mycobacterium tuberculosis 
CDC1551]
 gi|31793167|ref|NP_855660.1| methyltransferase [Mycobacterium bovis AF2122/97]
 74 more sequence titles
 Length=179

 Score =  345 bits (886),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 178/179 (99%), Positives = 179/179 (100%), Gaps = 0/179 (0%)

Query  1    VSALGRSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAV  60
            +SALGRSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAV
Sbjct  1    MSALGRSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAV  60

Query  61   ELHPRRVGVLRERFPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLV  120
            ELHPRRVGVLRERFPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLV
Sbjct  61   ELHPRRVGVLRERFPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLV  120

Query  121  AADLVLQRALVCKFASRNARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRRKCGDWQGR  179
            AADLVLQRALVCKFASRNARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRRKCGDWQGR
Sbjct  121  AADLVLQRALVCKFASRNARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRRKCGDWQGR  179


>gi|254232160|ref|ZP_04925487.1| hypothetical protein TBCG_01938 [Mycobacterium tuberculosis C]
 gi|124601219|gb|EAY60229.1| hypothetical protein TBCG_01938 [Mycobacterium tuberculosis C]
Length=150

 Score =  291 bits (744),  Expect = 3e-77, Method: Compositional matrix adjust.
 Identities = 149/150 (99%), Positives = 150/150 (100%), Gaps = 0/150 (0%)

Query  30   VRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRL  89
            +RPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRL
Sbjct  1    MRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRL  60

Query  90   PGRPFRVVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFASRNARRFTLTVGLM  149
            PGRPFRVVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFASRNARRFTLTVGLM
Sbjct  61   PGRPFRVVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFASRNARRFTLTVGLM  120

Query  150  LPRRAFLPPPHVDSAVLVVRRRKCGDWQGR  179
            LPRRAFLPPPHVDSAVLVVRRRKCGDWQGR
Sbjct  121  LPRRAFLPPPHVDSAVLVVRRRKCGDWQGR  150


>gi|26224788|gb|AAN76364.1| putative adenine rRNA methylase [Mycobacterium microti]
Length=146

 Score =  280 bits (717),  Expect = 5e-74, Method: Compositional matrix adjust.
 Identities = 143/146 (98%), Positives = 146/146 (100%), Gaps = 0/146 (0%)

Query  31   RPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRLP  90
            RPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRLP
Sbjct  1    RPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRLP  60

Query  91   GRPFRVVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFASRNARRFTLTVGLML  150
            GRPFRVVANPPYGISSRLLRT++APNSGLVAADLV+QRALVCKFASRNARRFTLTVGLML
Sbjct  61   GRPFRVVANPPYGISSRLLRTVVAPNSGLVAADLVVQRALVCKFASRNARRFTLTVGLML  120

Query  151  PRRAFLPPPHVDSAVLVVRRRKCGDW  176
            PRRAFLPPPHVDSAVLVVRRRKCGDW
Sbjct  121  PRRAFLPPPHVDSAVLVVRRRKCGDW  146


>gi|339294915|gb|AEJ47026.1| methyltransferase [Mycobacterium tuberculosis CCDC5079]
 gi|339298538|gb|AEJ50648.1| methyltransferase [Mycobacterium tuberculosis CCDC5180]
Length=144

 Score =  279 bits (714),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 143/144 (99%), Positives = 144/144 (100%), Gaps = 0/144 (0%)

Query  36   VFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRLPGRPFR  95
            +FDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRLPGRPFR
Sbjct  1    MFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPGITVVHADAASIRLPGRPFR  60

Query  96   VVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFASRNARRFTLTVGLMLPRRAF  155
            VVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFASRNARRFTLTVGLMLPRRAF
Sbjct  61   VVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFASRNARRFTLTVGLMLPRRAF  120

Query  156  LPPPHVDSAVLVVRRRKCGDWQGR  179
            LPPPHVDSAVLVVRRRKCGDWQGR
Sbjct  121  LPPPHVDSAVLVVRRRKCGDWQGR  144


>gi|121637871|ref|YP_978094.1| putative methyltransferase [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|121493518|emb|CAL71992.1| Probable methyltransferase [Mycobacterium bovis BCG str. Pasteur 
1173P2]
Length=174

 Score =  242 bits (618),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 123/123 (100%), Positives = 123/123 (100%), Gaps = 0/123 (0%)

Query  57   VVAVELHPRRVGVLRERFPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPN  116
            VVAVELHPRRVGVLRERFPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPN
Sbjct  52   VVAVELHPRRVGVLRERFPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPN  111

Query  117  SGLVAADLVLQRALVCKFASRNARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRRKCGDW  176
            SGLVAADLVLQRALVCKFASRNARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRRKCGDW
Sbjct  112  SGLVAADLVLQRALVCKFASRNARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRRKCGDW  171

Query  177  QGR  179
            QGR
Sbjct  172  QGR  174


>gi|284033869|ref|YP_003383800.1| ribosomal RNA adenine methylase transferase [Kribbella flavida 
DSM 17836]
 gi|283813162|gb|ADB35001.1| ribosomal RNA adenine methylase transferase [Kribbella flavida 
DSM 17836]
Length=182

 Score =  190 bits (482),  Expect = 9e-47, Method: Compositional matrix adjust.
 Identities = 106/179 (60%), Positives = 130/179 (73%), Gaps = 9/179 (5%)

Query  1    VSALGRSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAV  60
            +S  G +R AWGWH L   WA RVV AA VRPG+LV D+GAG GALTA LVRAGA VVAV
Sbjct  1    MSGSGPARGAWGWHPLDSRWAQRVVDAAGVRPGDLVLDVGAGLGALTAPLVRAGADVVAV  60

Query  61   ELHPRRVGVLRERFPG--ITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSG  118
            ELHP R   LR RF    + VV ADAA +RLP RPFRVV++PPYGIS+ LL+ LL+P S 
Sbjct  61   ELHPHRADRLRRRFADAPVRVVRADAADLRLPTRPFRVVSSPPYGISTELLKRLLSPRSR  120

Query  119  LVAADLVLQRALVCKFA-------SRNARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRR  170
            LV+ADLVLQR +V ++        +R +R +  ++G+ LPR+AF PPPHVDSAVL ++R
Sbjct  121  LVSADLVLQRQVVNRWVDGRAPGRARWSRYYDTSIGIRLPRKAFTPPPHVDSAVLRIQR  179


>gi|226876725|gb|ACO89583.1| Erm(41) [Mycobacterium bolletii]
Length=173

 Score =  182 bits (462),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 102/169 (61%), Positives = 122/169 (73%), Gaps = 3/169 (1%)

Query  6    RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR  65
            RSRR WGW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP 
Sbjct  5    RSRRQWGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG  64

Query  66   RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD  123
            R   LR RF    + V  AD  + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct  65   RARHLRSRFAEEDVRVAEADLLAFRWPRRPFRVVASPPYHVTSALIRSLLTPESRLLAAD  124

Query  124  LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            LVLQR +V K A R   R +TL  G+ LPR AF  PP VDS+VLV+RRR
Sbjct  125  LVLQRGVVHKHAKRAPVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR  173


>gi|197112116|gb|ACH43061.1| ribosome methyltransferase [Mycobacterium abscessus]
Length=173

 Score =  182 bits (462),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 102/169 (61%), Positives = 121/169 (72%), Gaps = 3/169 (1%)

Query  6    RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR  65
            RSRR WGW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP 
Sbjct  5    RSRRQWGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG  64

Query  66   RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD  123
            R   LR RF    + V  AD  + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct  65   RARHLRSRFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPQSRLLAAD  124

Query  124  LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            LVLQR  V K A R   R +TL  G+ LPR AF  PP VDS+VLV+RRR
Sbjct  125  LVLQRGAVHKHAKRAPVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR  173


>gi|226876711|gb|ACO89576.1| Erm(41) [Mycobacterium abscessus]
Length=173

 Score =  182 bits (461),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 102/169 (61%), Positives = 121/169 (72%), Gaps = 3/169 (1%)

Query  6    RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR  65
            RSRR WGW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP 
Sbjct  5    RSRRQWGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG  64

Query  66   RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD  123
            R   LR RF    + V  AD  + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct  65   RARHLRSRFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPESRLLAAD  124

Query  124  LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            LVLQR  V K A R   R +TL  G+ LPR AF  PP VDS+VLV+RRR
Sbjct  125  LVLQRGAVHKHAKRALVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR  173


>gi|197112119|gb|ACH43063.1| ribosome methyltransferase [Mycobacterium abscessus]
Length=173

 Score =  182 bits (461),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 102/169 (61%), Positives = 121/169 (72%), Gaps = 3/169 (1%)

Query  6    RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR  65
            RSRR WGW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP 
Sbjct  5    RSRRQWGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG  64

Query  66   RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD  123
            R   LR RF    + V  AD  + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct  65   RARHLRSRFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPESRLLAAD  124

Query  124  LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            LVLQR  V K A R   R +TL  G+ LPR AF  PP VDS+VLV+RRR
Sbjct  125  LVLQRGAVHKHAKRAPVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR  173


>gi|197112113|gb|ACH43059.1| ribosome methyltransferase [Mycobacterium abscessus]
Length=173

 Score =  182 bits (461),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 101/169 (60%), Positives = 121/169 (72%), Gaps = 3/169 (1%)

Query  6    RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR  65
            RSRR WGW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP 
Sbjct  5    RSRRQWGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG  64

Query  66   RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD  123
            R   LR RF    + +  AD  + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct  65   RARHLRSRFAEEDVRIAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPESRLLAAD  124

Query  124  LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            LVLQR  V K A R   R +TL  G+ LPR AF  PP VDS+VLV+RRR
Sbjct  125  LVLQRGAVHKHAKRALVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR  173


>gi|169629383|ref|YP_001703032.1| methyltransferase [Mycobacterium abscessus ATCC 19977]
 gi|169241350|emb|CAM62378.1| Probable methyltransferase [Mycobacterium abscessus]
 gi|196127896|gb|ACG70212.1| Erm(41) [Mycobacterium abscessus]
 gi|196127900|gb|ACG70215.1| Erm(41) [Mycobacterium abscessus]
 gi|197112122|gb|ACH43065.1| ribosome methyltransferase [Mycobacterium abscessus]
 gi|226876709|gb|ACO89575.1| Erm(41) [Mycobacterium abscessus ATCC 19977]
Length=173

 Score =  182 bits (461),  Expect = 3e-44, Method: Compositional matrix adjust.
 Identities = 101/169 (60%), Positives = 121/169 (72%), Gaps = 3/169 (1%)

Query  6    RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR  65
            RSRR WGW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP 
Sbjct  5    RSRRQWGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG  64

Query  66   RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD  123
            R   LR RF    + +  AD  + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct  65   RARHLRSRFAEEDVRIAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPESRLLAAD  124

Query  124  LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            LVLQR  V K A R   R +TL  G+ LPR AF  PP VDS+VLV+RRR
Sbjct  125  LVLQRGAVHKHAKRAPVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR  173


>gi|226876715|gb|ACO89578.1| Erm(41) [Mycobacterium abscessus]
Length=173

 Score =  181 bits (460),  Expect = 3e-44, Method: Compositional matrix adjust.
 Identities = 101/169 (60%), Positives = 121/169 (72%), Gaps = 3/169 (1%)

Query  6    RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR  65
            RSRR WGW+ + D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP 
Sbjct  5    RSRRQWGWYPITDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG  64

Query  66   RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD  123
            R   LR RF    + V  AD  + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct  65   RARHLRSRFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPESRLLAAD  124

Query  124  LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            LVLQR  V K A R   R +TL  G+ LPR AF  PP VDS+VLV+RRR
Sbjct  125  LVLQRGAVHKHAKRALVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR  173


>gi|226876713|gb|ACO89577.1| Erm(41) [Mycobacterium abscessus]
Length=173

 Score =  179 bits (454),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 101/169 (60%), Positives = 120/169 (72%), Gaps = 3/169 (1%)

Query  6    RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR  65
            RS R WGW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP 
Sbjct  5    RSGRQWGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG  64

Query  66   RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD  123
            R   LR RF    + V  AD  + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct  65   RARHLRSRFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPESRLLAAD  124

Query  124  LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            LVLQR  V K A R   R +TL  G+ LPR AF  PP VDS+VLV+RRR
Sbjct  125  LVLQRGAVHKHAKRALVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR  173


>gi|196127903|gb|ACG70217.1| Erm(41) [Mycobacterium abscessus]
 gi|197112128|gb|ACH43069.1| ribosome methyltransferase [Mycobacterium abscessus]
Length=173

 Score =  176 bits (447),  Expect = 1e-42, Method: Compositional matrix adjust.
 Identities = 101/169 (60%), Positives = 120/169 (72%), Gaps = 3/169 (1%)

Query  6    RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR  65
            RSRR  GW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP 
Sbjct  5    RSRRQRGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG  64

Query  66   RVGVLRERF--PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAAD  123
            R   LR RF    + V  AD  + R P RPFRVVA+PPY ++S L+R+LL P S L+AAD
Sbjct  65   RARHLRSRFAEEDVRVAEADLLAFRWPRRPFRVVASPPYQVTSALIRSLLTPESRLLAAD  124

Query  124  LVLQRALVCKFASRN-ARRFTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            LVLQR  V K A R   R +TL  G+ LPR AF  PP VDS+VLV+RRR
Sbjct  125  LVLQRGAVHKHAKRAPVRHWTLRAGITLPRSAFHHPPQVDSSVLVIRRR  173


>gi|157965686|gb|ABW06859.1| Erm(41) methylase [Mycobacterium abscessus]
Length=138

 Score =  141 bits (356),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 83/138 (61%), Positives = 97/138 (71%), Gaps = 3/138 (2%)

Query  37   FDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERF--PGITVVHADAASIRLPGRPF  94
             D+GAG GALTAHLV AGARV+AVELHP R   LR RF    + V  AD  + R P RPF
Sbjct  1    MDLGAGHGALTAHLVAAGARVLAVELHPGRARHLRSRFAEEDVRVAEADLLAFRWPRRPF  60

Query  95   RVVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFASRN-ARRFTLTVGLMLPRR  153
            RVVA+PPY ++S L+R+LL P S L+AADLVLQR  V K A R   R +TL  G+ LPR 
Sbjct  61   RVVASPPYQVTSALIRSLLTPESRLLAADLVLQRGAVHKHAKRAPVRHWTLRAGITLPRS  120

Query  154  AFLPPPHVDSAVLVVRRR  171
            AF  PP VDS+VLV+RRR
Sbjct  121  AFHHPPQVDSSVLVIRRR  138


>gi|229820415|ref|YP_002881941.1| ribosomal RNA adenine methylase transferase [Beutenbergia cavernae 
DSM 12333]
 gi|229566328|gb|ACQ80179.1| ribosomal RNA adenine methylase transferase [Beutenbergia cavernae 
DSM 12333]
Length=196

 Score =  125 bits (315),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 82/172 (48%), Positives = 105/172 (62%), Gaps = 7/172 (4%)

Query  5    GRSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHP  64
            GRSR  W + RL  +WA+ +V  A V  G+ V D+GAG GALT  LV  GARV+A+E H 
Sbjct  6    GRSR--WSYFRLSPDWASTLVDRAGVEHGDTVLDLGAGAGALTGPLVDRGARVIALERHA  63

Query  65   RRVGVLRERFPG--ITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAA  122
             RV  LRERF G  ++VV AD   +RLP RPFRVVANPP+ ++  ++  LL     LV A
Sbjct  64   GRVQRLRERFDGRSVSVVEADIRDLRLPARPFRVVANPPFHLARPIVADLLGARL-LVRA  122

Query  123  DLVLQRALVCKFASRNAR--RFTLTVGLMLPRRAFLPPPHVDSAVLVVRRRK  172
            DLVL+       A  +A   R+ +   L +PR AF P P VD+ VL +RRR 
Sbjct  123  DLVLRHDTARNLARAHADDPRWVVETTLAIPRTAFEPSPSVDALVLTLRRRS  174


>gi|312109334|ref|YP_003987650.1| rRNA (adenine-N(6)-)-methyltransferase [Geobacillus sp. Y4.1MC1]
 gi|311214435|gb|ADP73039.1| rRNA (adenine-N(6)-)-methyltransferase [Geobacillus sp. Y4.1MC1]
Length=284

 Score =  102 bits (254),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 61/175 (35%), Positives = 94/175 (54%), Gaps = 14/175 (8%)

Query  12   GWHRLHDE-WAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVL  70
            G H LH++     ++  A +   + V D+GAG+GALT  +     +V+AVE  PR V +L
Sbjct  22   GQHLLHNKRIINDLIQIANLTSNDTVLDLGAGKGALTFPVAEKAGKVIAVEYDPRFVEIL  81

Query  71   RER---FPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLL-APNSGLVAADLVL  126
            +++   +P I V+  D   +RLP  PF VVA  PY I++ +++ LL  P + L  A LV+
Sbjct  82   KKKAEAYPNIKVIQQDILKLRLPKEPFIVVAGIPYAITTPIMKMLLHQPANSLQRAVLVM  141

Query  127  QRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRRK  172
            ++    +F S              F L     + R  F PPP VDSA+L++RR+K
Sbjct  142  EKGAAKRFTSYPITNPLILKWRMWFDLGYVREISRENFSPPPKVDSAILIIRRKK  196


>gi|304435942|gb|ADM33800.1| erythromycin ribosome methyltransferase Erm41 [Mycobacterium 
abscessus ATCC 19977]
 gi|304435946|gb|ADM33802.1| erythromycin ribosome methyltransferase Erm41 [Mycobacterium 
bolletii]
Length=78

 Score = 92.0 bits (227),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 47/69 (69%), Positives = 54/69 (79%), Gaps = 0/69 (0%)

Query  6   RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR  65
           RSRR WGW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP 
Sbjct  5   RSRRQWGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG  64

Query  66  RVGVLRERF  74
           R   LR RF
Sbjct  65  RARHLRSRF  73


>gi|284041860|ref|YP_003392200.1| rRNA (adenine-N(6)-)-methyltransferase [Conexibacter woesei DSM 
14684]
 gi|283946081|gb|ADB48825.1| rRNA (adenine-N(6)-)-methyltransferase [Conexibacter woesei DSM 
14684]
Length=256

 Score = 90.9 bits (224),  Expect = 7e-17, Method: Compositional matrix adjust.
 Identities = 63/149 (43%), Positives = 82/149 (56%), Gaps = 10/149 (6%)

Query  34   ELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRER----FPGITVVHADAASIRL  89
            ++V D+GAG GA+TA L    ARV+AVE  P     LR R    +  + VV  DA ++  
Sbjct  38   DVVVDLGAGRGAVTAQLAPRAARVLAVERDPAWAHELRTRAAREWRNVEVVEGDARAVAF  97

Query  90   PGRPFRVVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALV------CKFASRNARRFT  143
            P  PF+VVAN P+   + L+R LLA   GL  A +VLQ           +F +  A  F 
Sbjct  98   PSAPFKVVANLPFNAGTGLVRRLLADGHGLAGAAVVLQLEAARRLAGGGRFGATWAPWFE  157

Query  144  LTVGLMLPRRAFLPPPHVDSAVLVVRRRK  172
            L VG  +P RAF P P VD+AVL VR R+
Sbjct  158  LAVGARIPARAFRPVPRVDAAVLTVRARQ  186


>gi|325104371|ref|YP_004274025.1| rRNA (adenine-N(6)-)-methyltransferase [Pedobacter saltans DSM 
12145]
 gi|324973219|gb|ADY52203.1| rRNA (adenine-N(6)-)-methyltransferase [Pedobacter saltans DSM 
12145]
Length=270

 Score = 90.5 bits (223),  Expect = 9e-17, Method: Compositional matrix adjust.
 Identities = 51/169 (31%), Positives = 86/169 (51%), Gaps = 23/169 (13%)

Query  28   AAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERF---PGITVVHADA  84
            A ++ G++V DIGAG G LT HLV+    V+A+E   R V  LR +F     +T++  D 
Sbjct  29   AEIQKGDVVLDIGAGSGFLTVHLVKHSTNVIAIENDNRLVSELRSKFRVNKNVTIIGLDY  88

Query  85   ASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFAS-------R  137
                +P + F+VV+N P+ ++S +L++L+  N      +   Q  L+ +F S       +
Sbjct  89   RKFSVPQKNFKVVSNIPFALTSEILKSLMYTN-----IEFFKQGCLIMQFESAKKLVRKK  143

Query  138  NARRFTLTVGLMLPRR--------AFLPPPHVDSAVLVVRRRKCGDWQG  178
                +T+        R        +F+PPP V SA++ + ++KC D  G
Sbjct  144  YFNPYTVFYHTFFEVRFIYEINPESFMPPPTVKSALVKIGKKKCTDNIG  192


>gi|1169553|sp|P45438.1|ERMK_BACLI RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin 
resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin 
B resistance protein
 gi|143195|gb|AAA22595.1| erythromycin-inducible 23S ribosomal RNA methylase [Bacillus 
licheniformis]
Length=287

 Score = 90.1 bits (222),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 53/175 (31%), Positives = 92/175 (53%), Gaps = 14/175 (8%)

Query  12   GWHRLHDE-WAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVL  70
            G H +H++     +V  A +   + V ++GAG+GALT  L +   +V+AVE   + V +L
Sbjct  23   GQHLMHNKKLIEEIVDRANISIDDTVLELGAGKGALTTMLSQKAGKVLAVENDSKFVAIL  82

Query  71   RER---FPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLL-APNSGLVAADLVL  126
              +    P   ++H D   I LP   F VV+N PY I++ +++ LL  P SG     +V+
Sbjct  83   TRKTAQHPNTKIIHQDIMKIHLPKEKFVVVSNIPYAITTPIMKMLLNNPASGFQKGIIVM  142

Query  127  QRALVCKFASRNAR-------RFTLTVGLM--LPRRAFLPPPHVDSAVLVVRRRK  172
            ++    +F S+  +       R    +G++  + +  F PPP VDSA++ + R+K
Sbjct  143  EKGAAKRFTSKFIKNSYVLAWRMWFDIGIVREISKEHFSPPPKVDSAMVRITRKK  197


>gi|282877321|ref|ZP_06286149.1| ribosomal RNA adenine dimethylase family protein [Prevotella 
buccalis ATCC 35310]
 gi|288926425|ref|ZP_06420346.1| rRNA adenine N-6-methyltransferase [Prevotella buccae D17]
 gi|281300560|gb|EFA92901.1| ribosomal RNA adenine dimethylase family protein [Prevotella 
buccalis ATCC 35310]
 gi|288336798|gb|EFC75163.1| rRNA adenine N-6-methyltransferase [Prevotella buccae D17]
Length=266

 Score = 89.4 bits (220),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 52/178 (30%), Positives = 86/178 (49%), Gaps = 14/178 (7%)

Query  9    RAWGWHRLHDE-WAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV  67
            R  G H   D+      +  A +   + V DIGAG+G LT HLVR    ++A+E     +
Sbjct  9    RYTGQHFTIDKVLIDDAIKIAKINESDTVIDIGAGKGFLTVHLVRQCTNIIAIENDKSLL  68

Query  68   GVLRERFPGIT---VVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPN-SGLVAAD  123
             +L+ +F   T   ++  D     +P R F+VV+N P+ I+S +L++L+  +    +   
Sbjct  69   SILKNKFSNNTNVKIIDCDFRCYTIPKRNFKVVSNIPFRITSEILKSLMFDSVEHFMGGS  128

Query  124  LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRRK  172
            L++Q     K  S+             F L +   +   +FLPPP V SA+L + R+K
Sbjct  129  LIMQLEPAQKLFSKKVFNPYIVFYHTFFDLKLMYEISHESFLPPPKVKSALLKIERKK  186


>gi|20094370|ref|NP_614217.1| dimethyladenosine transferase (rRNA methylase) [Methanopyrus 
kandleri AV19]
 gi|27151577|sp|Q8TWU7.1|RSMA_METKA RecName: Full=Probable ribosomal RNA small subunit methyltransferase 
A; AltName: Full=16S rRNA dimethyladenosine transferase; 
AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA) 
dimethyltransferase
 gi|19887438|gb|AAM02147.1| Dimethyladenosine transferase (rRNA methylase) [Methanopyrus 
kandleri AV19]
Length=278

 Score = 87.8 bits (216),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 64/177 (37%), Positives = 92/177 (52%), Gaps = 18/177 (10%)

Query  6    RSRRAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHP  64
            R RR  G H + D+     +V AA VR  ++V +IG G G LT +L+    +V+AVEL  
Sbjct  17   RPRRRLGQHFMVDDNILEFMVEAAEVREDDIVLEIGPGPGLLTRYLMTRAGQVIAVELDG  76

Query  65   RRVGVLRERF---PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVA  121
            R V +L+      P + +V AD     +P    +VVAN PY ISS +   LL  +  +  
Sbjct  77   RMVEILKRELGEAPNLEIVRADFLEYDVPDDVNKVVANIPYNISSPITFKLLELD--IDV  134

Query  122  ADLVLQRA----LVCKFASRNARRFTLTVGLM--------LPRRAFLPPPHVDSAVL  166
            A L  QR     +V +  S+   R T+ V L+        +PRRAF+PPP V S+V+
Sbjct  135  AVLTYQREFAERMVAEPGSKKYSRLTVMVNLLADVELLRGVPRRAFIPPPRVGSSVV  191


>gi|1169552|sp|Q03986.1|ERMD_BACLI RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin 
resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin 
B resistance protein
 gi|143201|gb|AAA22599.1| macrolide-lincosamide-streptogramin B resistance methylase [Bacillus 
licheniformis]
Length=287

 Score = 87.4 bits (215),  Expect = 8e-16, Method: Compositional matrix adjust.
 Identities = 54/182 (30%), Positives = 93/182 (52%), Gaps = 14/182 (7%)

Query  5    GRSRRAWGWHRLHDE-WAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELH  63
            G S    G H +H++     +V  A +   + V ++GAG+GALT  L +   +V+AVE  
Sbjct  16   GESPNFSGQHLMHNKKLIEEIVDRANISIDDTVLELGAGKGALTTVLSQKAGKVLAVEND  75

Query  64   PRRVGVLRER---FPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLL-APNSGL  119
             + V +L  +        ++H D   I LP   F VV+N PY I++ +++ LL  P SG 
Sbjct  76   SKFVDILTRKTAQHSNTKIIHQDIMKIHLPKEKFVVVSNIPYAITTPIMKMLLNNPASGF  135

Query  120  VAADLVLQRALVCKFASRNAR-------RFTLTVGLM--LPRRAFLPPPHVDSAVLVVRR  170
                +V+++    +F S+  +       R    +G++  + +  F PPP VDSA++ + R
Sbjct  136  QKGIIVMEKGAAKRFTSKFIKNSYVLAWRMWFDIGIVREISKEHFSPPPKVDSAMVRITR  195

Query  171  RK  172
            +K
Sbjct  196  KK  197


>gi|730032|sp|Q04720.1|ERMJ_BACAN RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin 
resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin 
B resistance protein
 gi|143198|gb|AAA22597.1| rRNA methyltransferase [Bacillus anthracis]
Length=287

 Score = 87.4 bits (215),  Expect = 8e-16, Method: Compositional matrix adjust.
 Identities = 54/182 (30%), Positives = 93/182 (52%), Gaps = 14/182 (7%)

Query  5    GRSRRAWGWHRLHDE-WAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELH  63
            G S    G H +H++     +V  A +   + V ++GAG+GALT  L +   +V+AVE  
Sbjct  16   GESPNFSGQHLMHNKKLIEEIVDRANISIDDTVLELGAGKGALTTVLSQKAGKVLAVEND  75

Query  64   PRRVGVLRER---FPGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLL-APNSGL  119
             + V +L  +        ++H D   I LP   F VV+N PY I++ +++ LL  P SG 
Sbjct  76   SKFVDILTRKTAQHSNTKIIHQDIMKIHLPKEKFVVVSNIPYAITTPIMKMLLNNPASGF  135

Query  120  VAADLVLQRALVCKFASRNAR-------RFTLTVGLM--LPRRAFLPPPHVDSAVLVVRR  170
                +V+++    +F S+  +       R    +G++  + +  F PPP VDSA++ + R
Sbjct  136  QKGIIVMEKGAAKRFTSKFIKNSYVLAWRMWFDIGIVREISKEHFSPPPKVDSAMVRITR  195

Query  171  RK  172
            +K
Sbjct  196  KK  197


>gi|304435944|gb|ADM33801.1| erythromycin ribosome methyltransferase Erm41 [Mycobacterium 
abscessus]
Length=78

 Score = 87.0 bits (214),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 46/69 (67%), Positives = 53/69 (77%), Gaps = 0/69 (0%)

Query  6   RSRRAWGWHRLHDEWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR  65
           RSRR  GW+ L D+WAAR+V+ + VR GE V D+GAG GALTAHLV AGARV+AVELHP 
Sbjct  5   RSRRQRGWYPLTDDWAARIVAESGVRSGEFVVDLGAGHGALTAHLVAAGARVLAVELHPG  64

Query  66  RVGVLRERF  74
           R   LR RF
Sbjct  65  RARHLRSRF  73


>gi|15612943|ref|NP_241246.1| rRNA adenine N-6-methyltransferase [Bacillus halodurans C-125]
 gi|5822819|dbj|BAA83962.1| ERMK [Bacillus halodurans]
 gi|10172993|dbj|BAB04099.1| rRNA adenine N-6-methyltransferase [Bacillus halodurans C-125]
Length=284

 Score = 86.7 bits (213),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 57/174 (33%), Positives = 88/174 (51%), Gaps = 14/174 (8%)

Query  12   GWHRLHDE-WAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVL  70
            G H +H++     +V  A V   + V ++GAG+GALT  L     RV+AVE     + VL
Sbjct  23   GQHLMHNKKLLQEIVDQAKVSKKDTVLELGAGKGALTTFLSERAKRVLAVEYDQTFIQVL  82

Query  71   RERF---PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLA-PNSGLVAADLVL  126
              +       T++H D   I LP   F VV+N PY I++ +++ LL+ P SG     +V+
Sbjct  83   NRKMAHAANTTIIHEDIMRIHLPKGEFVVVSNIPYSITTPIMKKLLSNPVSGFQRGVIVM  142

Query  127  QRALVCKFAS---RNARR------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            ++    +F S   +NA        F L     + R  F PPP VDSA++ + R+
Sbjct  143  EKGAAKRFTSPFIKNAYVLAWRMWFDLEYVKGISRECFSPPPKVDSAMVFISRK  196


>gi|294776564|ref|ZP_06742037.1| ribosomal RNA adenine dimethylase family protein [Bacteroides 
vulgatus PC510]
 gi|294449620|gb|EFG18147.1| ribosomal RNA adenine dimethylase family protein [Bacteroides 
vulgatus PC510]
Length=261

 Score = 85.9 bits (211),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 59/177 (34%), Positives = 87/177 (50%), Gaps = 14/177 (7%)

Query  9    RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV  67
            R  G H   D+   +  +  A +   + V DIGAG+G LT HL+R    VVA+E     V
Sbjct  4    RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLRIANNVVAIENDTALV  63

Query  68   GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSG-LVAAD  123
              LR+ F     + VV  D  +  +P  PF+VV+N PYGI+S + + L+  + G  +   
Sbjct  64   EHLRKLFSDARNVQVVGCDFRNFEVPKFPFKVVSNIPYGITSDIFKILMFESLGNFLGGS  123

Query  124  LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            +VLQ     K  SR             F L +   +   +FLPPP V SA+L ++R+
Sbjct  124  IVLQLEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFLPPPTVKSALLNIKRK  180


>gi|15072727|emb|CAC47934.1| rRNA adenine-N6 methyltransferase [Bacteroides thetaiotaomicron]
Length=266

 Score = 85.9 bits (211),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 58/177 (33%), Positives = 86/177 (49%), Gaps = 14/177 (7%)

Query  9    RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV  67
            R  G H   D+   +  +  A +   + V DIGAG+G LT HL++    VVA+E     V
Sbjct  9    RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV  68

Query  68   GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPN-SGLVAAD  123
              LR+ F     + VV  D  +  +P  PF+VV+N PYGI+S + + L+  N    +   
Sbjct  69   EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFENLENFLGGS  128

Query  124  LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            +VLQ     K  SR             F L +   +   +FLPPP V SA+L ++R+
Sbjct  129  IVLQFEPTQKLFSRKLYNPYTVFCHTFFDLKLVYEVGPESFLPPPTVKSALLNIKRK  185


>gi|400267|sp|Q02607.1|ERMU_BACFR RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin 
resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin 
B resistance protein
 gi|143943|gb|AAA63165.1| methyltransferase [Bacteroides fragilis]
Length=266

 Score = 85.9 bits (211),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 58/177 (33%), Positives = 86/177 (49%), Gaps = 14/177 (7%)

Query  9    RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV  67
            R  G H   D+   +  +  A +   + V DIGAG+G LT HL++    VVA+E     V
Sbjct  9    RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV  68

Query  68   GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPN-SGLVAAD  123
              LR+ F     + VV  D  +  +P  PF+VV+N PYGI+S + + L+  N    +   
Sbjct  69   EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFENLENFLGGS  128

Query  124  LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            +VLQ     K  SR             F L +   +   +FLPPP V SA+L ++R+
Sbjct  129  IVLQFEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFLPPPTVKSALLNIKRK  185


>gi|299148760|ref|ZP_07041822.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_23]
 gi|301311645|ref|ZP_07217571.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 20_3]
 gi|313886992|ref|ZP_07820692.1| ribosomal RNA adenine dimethylase family protein [Porphyromonas 
asaccharolytica PR426713P-I]
 gi|298513521|gb|EFI37408.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_23]
 gi|300830386|gb|EFK61030.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 20_3]
 gi|312923518|gb|EFR34327.1| ribosomal RNA adenine dimethylase family protein [Porphyromonas 
asaccharolytica PR426713P-I]
Length=266

 Score = 85.9 bits (211),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 58/177 (33%), Positives = 86/177 (49%), Gaps = 14/177 (7%)

Query  9    RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV  67
            R  G H   D+   +  +  A +   + V DIGAG+G LT HL++    VVA+E     V
Sbjct  9    RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV  68

Query  68   GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPN-SGLVAAD  123
              LR+ F     + VV  D  +  +P  PF+VV+N PYGI+S + + L+  N    +   
Sbjct  69   EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFENLENFLGGS  128

Query  124  LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            +VLQ     K  SR             F L +   +   +FLPPP V SA+L ++R+
Sbjct  129  IVLQFEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFLPPPTVKSALLNIKRK  185


>gi|57234784|ref|YP_181149.1| dimethyladenosine transferase [Dehalococcoides ethenogenes 195]
 gi|119365020|sp|Q3Z9F0.1|RSMA_DEHE1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; 
AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; 
AltName: Full=16S rRNA dimethyladenosine 
transferase; AltName: Full=16S rRNA dimethylase; AltName: 
Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase
 gi|57225232|gb|AAW40289.1| dimethyladenosine transferase [Dehalococcoides ethenogenes 195]
Length=291

 Score = 85.1 bits (209),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 56/192 (30%), Positives = 96/192 (50%), Gaps = 19/192 (9%)

Query  6    RSRRAWGWHRLHDEWA-ARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHP  64
            R+R+  G H L  +    +++ AA ++P + V ++G G G LT  L++   +V+AVEL  
Sbjct  29   RARKGLGQHFLISQGVLNKILLAADLKPTDTVIEVGPGLGVLTEELIKRAGQVIAVELDD  88

Query  65   RRVGVLRERF---PGITVVHADA-----ASIRLPGRPFRVVANPPYGISSRLLRTLLAPN  116
            + V  L E+F   P   ++H+D      A I     P+++VAN PY I+S +LR  L   
Sbjct  89   KLVTALTEKFKAYPNFRIIHSDILKTSPAEILGQNIPYKLVANLPYYITSAVLRQFLEAE  148

Query  117  SGLVAADLVLQRALVCKFASRNARRFTLTVGL----------MLPRRAFLPPPHVDSAVL  166
            +      +++Q+ +     ++      LT+ +          ++P  AF PPP VDSA++
Sbjct  149  AKPELMVVMVQKEVAKNMVAQTGDMGLLTLSVRFYGNPSLVSVVPGGAFYPPPEVDSAIV  208

Query  167  VVRRRKCGDWQG  178
             V   +    QG
Sbjct  209  KVAIPQAAIMQG  220


>gi|54024690|ref|YP_118932.1| putative ribosomal RNA adenine N-6-methyltransferase [Nocardia 
farcinica IFM 10152]
 gi|54016198|dbj|BAD57568.1| putative ribosomal RNA adenine N-6-methyltransferase [Nocardia 
farcinica IFM 10152]
Length=269

 Score = 85.1 bits (209),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 63/166 (38%), Positives = 84/166 (51%), Gaps = 14/166 (8%)

Query  19   EWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERF---P  75
            + A R+V +A V  G+LV +IG G+G LTA L+    RV+A E+  R    L+ R+   P
Sbjct  26   DIARRIVRSAGVGAGDLVLEIGPGDGMLTAQLLGVAGRVLAYEIDARYAARLQARYAHDP  85

Query  76   GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVAADLVLQRALVCKFA  135
             I   H D     LP  PF VVAN P+G ++ ++R  LA    L +A L+ QR    K  
Sbjct  86   RIHCYHKDFRDAPLPDEPFGVVANVPFGSTTDIVRWCLAARQ-LTSATLLTQREFARKHT  144

Query  136  SRNARRFTLTV----------GLMLPRRAFLPPPHVDSAVLVVRRR  171
                R   LTV          G  + RR F P P VD A+L +RRR
Sbjct  145  GDYGRWSKLTVTHWPTTTMHLGARIDRRHFRPVPRVDGALLHLRRR  190


>gi|134297956|ref|YP_001111452.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1]
 gi|134050656|gb|ABO48627.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1]
Length=293

 Score = 85.1 bits (209),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 60/197 (31%), Positives = 98/197 (50%), Gaps = 30/197 (15%)

Query  6    RSRRAWGWHRLHD-EWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHP  64
            R R+A G + L D     ++V+AA + PG+LVF+IG G G LT  L R+  +V+AVE+  
Sbjct  20   RVRKALGQNFLMDANIIDKIVNAAELTPGDLVFEIGPGLGVLTQRLARSAGKVIAVEIDK  79

Query  65   RRVGVLRER---FPGITVVHADAASIRLP--------------GRPFRVVANPPYGISSR  107
              + +L E    F    VVHADA  +                  + F++VAN PY I++ 
Sbjct  80   NLLPILTETLTDFDNAQVVHADALKVDFDRLAAEHTEGGFGKGAKSFKLVANLPYYITTP  139

Query  108  LLRTLLAPNSGLVAADLVLQRALVCKF-ASRNARRF-TLTVGLM----------LPRRAF  155
            +L  LL          +++Q+ +  +  AS   + + +L++ +           +P+  F
Sbjct  140  ILMHLLTSGFNFDCLVVMMQKEVAERLQASPGGKDYGSLSIAVQYYTVPEIVTRVPKTVF  199

Query  156  LPPPHVDSAVLVVRRRK  172
             P P V+SAV+ + RRK
Sbjct  200  FPAPDVESAVIQLTRRK  216


>gi|307091896|gb|ADN28283.1| putative rRNA methyltransferase [uncultured bacterium]
Length=116

 Score = 85.1 bits (209),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 55/107 (52%), Positives = 65/107 (61%), Gaps = 7/107 (6%)

Query  27   AAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPG------ITVV  80
            AA V  GELVFD+GAG GALT  L RAGARVV+VE  P     L  R  G      + +V
Sbjct  10   AATVGAGELVFDLGAGTGALTIPLARAGARVVSVEADPTWADRLLGRLVGAGLSGNVELV  69

Query  81   HADAASIRLPGRPFRVVANPPYGISSRLLRTLLA-PNSGLVAADLVL  126
              D   + LP  P+RVV+NPPYGI++ LLR LL  P  G   ADL+L
Sbjct  70   VGDILDVPLPSEPYRVVSNPPYGITTALLRRLLERPERGPYRADLLL  116


>gi|221633286|ref|YP_002522511.1| dimethyladenosine transferase [Thermomicrobium roseum DSM 5159]
 gi|221155685|gb|ACM04812.1| dimethyladenosine transferase [Thermomicrobium roseum DSM 5159]
Length=297

 Score = 84.7 bits (208),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 70/183 (39%), Positives = 92/183 (51%), Gaps = 17/183 (9%)

Query  6    RSRRAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHP  64
            R R+A G H LHD    R +V  A + P  LV +IG G G LT  L R    V+AVEL  
Sbjct  37   RPRKALGQHFLHDRAIVRRIVETAQLPPDALVVEIGPGLGILTEELARWARSVIAVELDA  96

Query  65   RRVGVLRERFPGITV--VHADAASIRLPGR----PFRVVANPPYGISSRLLRTLLAPNSG  118
            R    L ERF G  V  VH DA  + L       P+ VVAN PY +++ +L  LL  +  
Sbjct  97   RLAEQLAERFHGTNVRIVHGDALEVDLAALTGQCPYFVVANLPYNVATPILERLLTSDHP  156

Query  119  LVAADLVLQRALVCKFASRNARRFTLTVGLM---LPRR-------AFLPPPHVDSAVLVV  168
                 +++QR +  + A+R      L V +    LPR        AF PPP V+SAV+V+
Sbjct  157  PERLVVMVQREVAERMAARPPAMSYLGVLVQFFALPRVAFRIGPGAFTPPPKVESAVVVL  216

Query  169  RRR  171
             RR
Sbjct  217  DRR  219


>gi|307091972|gb|ADN28321.1| putative rRNA methyltransferase [uncultured bacterium]
Length=114

 Score = 84.7 bits (208),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 54/105 (52%), Positives = 63/105 (60%), Gaps = 5/105 (4%)

Query  27   AAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVLRERFPG----ITVVHA  82
            AA V  GELV D+GAG GALT  L  AGARVVAVE  P     L  R  G    + VV  
Sbjct  10   AATVTAGELVLDLGAGTGALTIPLAEAGARVVAVEADPVWAEKLAGRLAGSSLTVEVVAG  69

Query  83   DAASIRLPGRPFRVVANPPYGISSRLLRTLL-APNSGLVAADLVL  126
            D  ++ LP  PFRV ANPP+G+++ LLR LL  P  G   ADL+L
Sbjct  70   DILAVPLPSEPFRVAANPPFGVTTALLRRLLDQPERGPYQADLLL  114


>gi|313150007|ref|ZP_07812200.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|336410311|ref|ZP_08590791.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 2_1_56FAA]
 gi|154893|gb|AAA27431.1| clindamycin resistance determinant (ermFS) [Bacteroides fragilis]
 gi|6979874|gb|AAF34636.1| ErmF [Shuttle vector pHS17]
 gi|313138774|gb|EFR56134.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|335945367|gb|EGN07180.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 2_1_56FAA]
Length=266

 Score = 84.7 bits (208),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 58/177 (33%), Positives = 87/177 (50%), Gaps = 14/177 (7%)

Query  9    RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV  67
            R  G H   D+   +  +  A +   + V DIGAG+G LT HL++    VVA+E     V
Sbjct  9    RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV  68

Query  68   GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSG-LVAAD  123
              LR+ F     + VV  D  +  +P  PF+VV+N PYGI+S + + L+  + G  +   
Sbjct  69   EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFESLGNFLGGS  128

Query  124  LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            +VLQ     K  SR             F L +   +   +FLPPP V SA+L ++R+
Sbjct  129  IVLQLEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFLPPPTVKSALLNIKRK  185


>gi|307091998|gb|ADN28334.1| putative rRNA methyltransferase [uncultured bacterium]
Length=114

 Score = 84.7 bits (208),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 52/105 (50%), Positives = 65/105 (62%), Gaps = 5/105 (4%)

Query  27   AAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHP----RRVGVLRERFPGITVVHA  82
            AA V  GELV D+GAG GALT  +  AGARVVAVE  P    +  G L +    + VV  
Sbjct  10   AATVTAGELVLDLGAGTGALTVPMAEAGARVVAVEADPVWAEKLAGRLAKSGLTVEVVAG  69

Query  83   DAASIRLPGRPFRVVANPPYGISSRLLRTLL-APNSGLVAADLVL  126
            D  ++ LP  P+RVVANPP+G+++ LLR LL  P  G   ADL+L
Sbjct  70   DILAVPLPSEPYRVVANPPFGVTTALLRRLLDQPERGPYQADLLL  114


>gi|7715978|gb|AAF68230.1|AF203972_3 ErmF [Shuttle vector pBA]
Length=266

 Score = 84.3 bits (207),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 58/177 (33%), Positives = 87/177 (50%), Gaps = 14/177 (7%)

Query  9    RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV  67
            R  G H   D+   +  +  A +   + V DIGAG+G LT HL++    VVA+E     V
Sbjct  9    RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV  68

Query  68   GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSG-LVAAD  123
              LR+ F     + VV  D  +  +P  PF+VV+N PYGI+S + + L+  + G  +   
Sbjct  69   EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFESLGNFLGGS  128

Query  124  LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            +VLQ     K  SR             F L +   +   +FLPPP V SA+L ++R+
Sbjct  129  IVLQLEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFLPPPTVKSALLNIKRK  185


>gi|127196|sp|P10337.1|ERMF_BACFR RecName: Full=rRNA adenine N-6-methyltransferase; AltName: Full=Erythromycin 
resistance protein; AltName: Full=Macrolide-lincosamide-streptogramin 
B resistance protein
 gi|150541|gb|AAA98217.1| macrolide-lincosamide-streptogramin B-resistance protein [Bacteroides 
fragilis]
 gi|154890|gb|AAA88675.1| macrolide-lincosamide-streptogramin-resistance protein [Bacteroides 
fragilis]
 gi|853782|emb|CAA60706.1| ermF [Bacteroides sp.]
 gi|1016682|gb|AAB39962.1| rRNA methyltransferase [Cloning vector pFD288]
Length=266

 Score = 84.3 bits (207),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 58/177 (33%), Positives = 87/177 (50%), Gaps = 14/177 (7%)

Query  9    RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV  67
            R  G H   D+   +  +  A +   + V DIGAG+G LT HL++    VVA+E     V
Sbjct  9    RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV  68

Query  68   GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSG-LVAAD  123
              LR+ F     + VV  D  +  +P  PF+VV+N PYGI+S + + L+  + G  +   
Sbjct  69   EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFESLGNFLGGS  128

Query  124  LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            +VLQ     K  SR             F L +   +   +FLPPP V SA+L ++R+
Sbjct  129  IVLQLEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFLPPPTVKSALLNIKRK  185


>gi|56965270|ref|YP_177002.1| rRNA adenine N-6-methyltransferase [Bacillus clausii KSM-K16]
 gi|56911514|dbj|BAD66041.1| rRNA adenine N-6-methyltransferase [Bacillus clausii KSM-K16]
Length=281

 Score = 84.3 bits (207),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 54/175 (31%), Positives = 92/175 (53%), Gaps = 14/175 (8%)

Query  12   GWHRLHDE-WAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRVGVL  70
            G H +H++     +V  A V   + V ++GAG+GALT  L     RV+AVE   + V  L
Sbjct  23   GQHFMHNKRLLKEIVDKADVSVRDTVLELGAGKGALTTILSERADRVLAVEFDQKCVEAL  82

Query  71   RERFPG---ITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLL-APNSGLVAADLVL  126
            + +  G   ++++H D   + LP  PF VV+N PY I++ +++ LL  P + L    +V+
Sbjct  83   QWKLVGSKNVSILHQDIMKVTLPTEPFVVVSNIPYAITTAIMKMLLNNPKNKLQRGAIVM  142

Query  127  QRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRRK  172
            ++    +F S + +          F +     + R AF PPP VDSA++ + R++
Sbjct  143  EKGAAKRFTSVSPKDAYVMAWHMWFDIHYERGISRSAFSPPPKVDSALVRIVRKQ  197


>gi|228470626|ref|ZP_04055482.1| rRNA adenine N-6-methyltransferase [Porphyromonas uenonis 60-3]
 gi|288801882|ref|ZP_06407324.1| rRNA adenine N-6-methyltransferase [Prevotella melaninogenica 
D18]
 gi|299143035|ref|ZP_07036156.1| rRNA adenine N-6-methyltransferase [Prevotella oris C735]
 gi|319641873|ref|ZP_07996549.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_40A]
 gi|228307634|gb|EEK16613.1| rRNA adenine N-6-methyltransferase [Porphyromonas uenonis 60-3]
 gi|288335924|gb|EFC74357.1| rRNA adenine N-6-methyltransferase [Prevotella melaninogenica 
D18]
 gi|298575486|gb|EFI47371.1| rRNA adenine N-6-methyltransferase [Prevotella oris C735]
 gi|317386505|gb|EFV67408.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. 3_1_40A]
Length=266

 Score = 84.0 bits (206),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 57/177 (33%), Positives = 87/177 (50%), Gaps = 14/177 (7%)

Query  9    RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV  67
            R  G H   D+   +  +  A +   + V DIGAG+G LT HL++    VVA+E     V
Sbjct  9    RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV  68

Query  68   GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSG-LVAAD  123
              LR+ F     + VV  D  +  +P  PF+VV+N PYGI+S + + L+  + G  +   
Sbjct  69   EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFESLGNFLGGS  128

Query  124  LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRR  171
            ++LQ     K  SR             F L +   +   +FLPPP V SA+L ++R+
Sbjct  129  IILQLEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFLPPPTVKSALLNIKRK  185


>gi|330997743|ref|ZP_08321583.1| ribosomal RNA adenine dimethylase family protein [Paraprevotella 
xylaniphila YIT 11841]
 gi|329569940|gb|EGG51696.1| ribosomal RNA adenine dimethylase family protein [Paraprevotella 
xylaniphila YIT 11841]
Length=285

 Score = 84.0 bits (206),  Expect = 9e-15, Method: Compositional matrix adjust.
 Identities = 57/178 (33%), Positives = 87/178 (49%), Gaps = 14/178 (7%)

Query  9    RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV  67
            R  G H   D+   +  +  A +   + V DIGAG+G LT HL++    VVA+E     V
Sbjct  28   RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV  87

Query  68   GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSG-LVAAD  123
              LR+ F     + VV  D  +  +P  PF+VV+N PYGI+S + + L+  + G  +   
Sbjct  88   EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFESLGNFLGGS  147

Query  124  LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRRK  172
            +VLQ     K  SR             F L +   +   +F PPP V SA+L ++R++
Sbjct  148  IVLQLEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFFPPPTVKSALLNIKRKQ  205


>gi|265755244|ref|ZP_06090014.1| clindamycin resistance determinant [Bacteroides sp. 3_1_33FAA]
 gi|298482352|ref|ZP_07000538.1| rRNA adenine N-6-methyltransferase [Bacteroides sp. D22]
 gi|315919274|ref|ZP_07915514.1| clindamycin resistance determinant [Bacteroides sp. D2]
 9 more sequence titles
 Length=266

 Score = 83.6 bits (205),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 57/178 (33%), Positives = 87/178 (49%), Gaps = 14/178 (7%)

Query  9    RAWGWHRLHDEWAAR-VVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV  67
            R  G H   D+   +  +  A +   + V DIGAG+G LT HL++    VVA+E     V
Sbjct  9    RFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVAIENDTALV  68

Query  68   GVLRERFP---GITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSG-LVAAD  123
              LR+ F     + VV  D  +  +P  PF+VV+N PYGI+S + + L+  + G  +   
Sbjct  69   EHLRKLFSDARNVQVVGCDFRNFAVPKFPFKVVSNIPYGITSDIFKILMFESLGNFLGGS  128

Query  124  LVLQRALVCKFASRNARR---------FTLTVGLMLPRRAFLPPPHVDSAVLVVRRRK  172
            +VLQ     K  SR             F L +   +   +F PPP V SA+L ++R++
Sbjct  129  IVLQLEPTQKLFSRKLYNPYTVFYHTFFDLKLVYEVGPESFFPPPTVKSALLNIKRKQ  186


>gi|297735070|emb|CBI17432.3| unnamed protein product [Vitis vinifera]
Length=383

 Score = 83.6 bits (205),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 91/180 (51%), Gaps = 20/180 (11%)

Query  9    RAWGWHRLHD-EWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV  67
            ++WG H L +      +V  + ++P + V +IG G G LT  L++A  RVVAVEL  R V
Sbjct  50   KSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQAAQRVVAVELDARMV  109

Query  68   GVLRERF------PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVA  121
             +LR+R         +TV+  DA     P     VVAN PYGISS L+  L+   +   +
Sbjct  110  EILRKRVAEHGLEDQLTVICKDALKTDFPQFDL-VVANIPYGISSPLVAKLVFGANPFRS  168

Query  122  ADLVLQ----RALVCKFASRNARRFTLTVGLM--------LPRRAFLPPPHVDSAVLVVR  169
            A L+LQ    R L+         R  + V L+        + +R FLP P VDS+V+ +R
Sbjct  169  ATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPKVDSSVVTIR  228


>gi|225431251|ref|XP_002267827.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length=383

 Score = 83.6 bits (205),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 91/180 (51%), Gaps = 20/180 (11%)

Query  9    RAWGWHRLHD-EWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV  67
            ++WG H L +      +V  + ++P + V +IG G G LT  L++A  RVVAVEL  R V
Sbjct  50   KSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQAAQRVVAVELDARMV  109

Query  68   GVLRERF------PGITVVHADAASIRLPGRPFRVVANPPYGISSRLLRTLLAPNSGLVA  121
             +LR+R         +TV+  DA     P     VVAN PYGISS L+  L+   +   +
Sbjct  110  EILRKRVAEHGLEDQLTVICKDALKTDFPQFDL-VVANIPYGISSPLVAKLVFGANPFRS  168

Query  122  ADLVLQ----RALVCKFASRNARRFTLTVGLM--------LPRRAFLPPPHVDSAVLVVR  169
            A L+LQ    R L+         R  + V L+        + +R FLP P VDS+V+ +R
Sbjct  169  ATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPKVDSSVVTIR  228


>gi|255636797|gb|ACU18732.1| unknown [Glycine max]
Length=308

 Score = 83.2 bits (204),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 61/184 (34%), Positives = 89/184 (49%), Gaps = 22/184 (11%)

Query  9    RAWGWHRLHDEW-AARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPRRV  67
            ++ G H L +      +V  A V+  +++ +IG G G LT  L+ AG +V+A+E+ PR V
Sbjct  30   KSKGQHILKNPLLVDSIVEKAGVKSTDVILEIGPGTGNLTKKLLEAGKKVIAIEIDPRMV  89

Query  68   GVLRERFPG------ITVVHADAASIRLPGRPFRV-VANPPYGISSRLLRTLLAPNSGLV  120
              L+ RF G      +TV+  D     LP   F + VAN PY ISS L   LL       
Sbjct  90   LELQRRFQGTPHSNRLTVIQGDVLKTELPY--FDICVANIPYQISSPLTFKLLKHEPAFR  147

Query  121  AADLVLQRALVCKFASRNARRFT--LTVG----------LMLPRRAFLPPPHVDSAVLVV  168
            AA ++ QR    +  ++   +    LTV           L + R  F PPP VDS+V+ +
Sbjct  148  AAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLHARVFHLLKVGRNNFRPPPKVDSSVVRI  207

Query  169  RRRK  172
              RK
Sbjct  208  EPRK  211


>gi|227528872|ref|ZP_03958921.1| dimethyladenosine transferase [Lactobacillus vaginalis ATCC 49540]
 gi|227351195|gb|EEJ41486.1| dimethyladenosine transferase [Lactobacillus vaginalis ATCC 49540]
Length=297

 Score = 83.2 bits (204),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 59/192 (31%), Positives = 97/192 (51%), Gaps = 26/192 (13%)

Query  7    SRRAWGWHRLHD-EWAARVVSAAAVRPGELVFDIGAGEGALTAHLVRAGARVVAVELHPR  65
            +++ +G + L D     R+V AA V   + V +IG G GALT  L +A  +VVAVE+   
Sbjct  24   AKKGFGQNFLTDPAILQRIVEAAEVTDADNVIEIGPGIGALTEKLAQAAGQVVAVEIDQD  83

Query  66   RVGVLRER---FPGITVVHADAASIRL----------PGRPFRVVANPPYGISSRLLRTL  112
             + VL +    +  +TV++ D     L          P +P +VVAN PY I+S +L  L
Sbjct  84   LIPVLEKTLAAYDNVTVINQDILRANLPELIQQQFTDPTKPIKVVANLPYYITSPILMNL  143

Query  113  LAPNSGLVAADLVLQRA----LVCKFASRNARRFTL--------TVGLMLPRRAFLPPPH  160
            LA      +  +++Q+     L  K  ++     TL         V   + R +F+P P+
Sbjct  144  LASPVEWSSITVMMQKEVAQRLTAKPGTKQYGALTLAIEYQMDAEVAFNVSRHSFIPAPN  203

Query  161  VDSAVLVVRRRK  172
            VDSA++V+++R+
Sbjct  204  VDSAIVVLKQRQ  215



Lambda     K      H
   0.327    0.140    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 158760884352


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40