BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv1990A Length=111 Score E Sequences producing significant alignments: (Bits) Value gi|15841471|ref|NP_336508.1| hypothetical protein MT2045.1 [Myco... 210 6e-53 gi|312198467|ref|YP_004018528.1| short-chain dehydrogenase/reduc... 53.9 7e-06 gi|342857740|ref|ZP_08714396.1| oxidoreductase [Mycobacterium co... 53.5 1e-05 gi|258652560|ref|YP_003201716.1| short-chain dehydrogenase/reduc... 53.1 1e-05 gi|111219809|ref|YP_710603.1| carveol dehydrogenase [Frankia aln... 52.8 2e-05 gi|145222181|ref|YP_001132859.1| short-chain dehydrogenase/reduc... 52.8 2e-05 gi|120406116|ref|YP_955945.1| short-chain dehydrogenase/reductas... 52.8 2e-05 gi|126432932|ref|YP_001068623.1| short-chain dehydrogenase/reduc... 52.4 2e-05 gi|108797310|ref|YP_637507.1| short-chain dehydrogenase/reductas... 52.4 2e-05 gi|296169450|ref|ZP_06851070.1| short-chain dehydrogenase/reduct... 52.4 2e-05 gi|240173183|ref|ZP_04751841.1| short-chain type dehydrogenase/r... 52.0 3e-05 gi|288922710|ref|ZP_06416882.1| short-chain dehydrogenase/reduct... 52.0 3e-05 gi|333989056|ref|YP_004521670.1| short-chain dehydrogenase [Myco... 51.6 3e-05 gi|342858472|ref|ZP_08715127.1| short chain dehydrogenase [Mycob... 51.6 4e-05 gi|111017396|ref|YP_700368.1| carveol dehydrogenase [Rhodococcus... 51.6 4e-05 gi|312200187|ref|YP_004020248.1| short-chain dehydrogenase/reduc... 51.6 4e-05 gi|254818536|ref|ZP_05223537.1| short chain dehydrogenase [Mycob... 51.6 4e-05 gi|312194458|ref|YP_004014519.1| short-chain dehydrogenase/reduc... 51.6 4e-05 gi|312197762|ref|YP_004017823.1| short-chain dehydrogenase/reduc... 51.2 4e-05 gi|108800643|ref|YP_640840.1| short-chain dehydrogenase/reductas... 51.2 5e-05 gi|108797315|ref|YP_637512.1| short chain dehydrogenase [Mycobac... 51.2 5e-05 gi|41408877|ref|NP_961713.1| short chain dehydrogenase [Mycobact... 51.2 5e-05 gi|145222494|ref|YP_001133172.1| short chain dehydrogenase [Myco... 51.2 6e-05 gi|158315062|ref|YP_001507570.1| short-chain dehydrogenase/reduc... 50.8 6e-05 gi|312195176|ref|YP_004015237.1| short-chain dehydrogenase/reduc... 50.8 7e-05 gi|118468672|ref|YP_890256.1| carveol dehydrogenase [Mycobacteri... 50.4 7e-05 gi|126432937|ref|YP_001068628.1| short chain dehydrogenase [Myco... 50.4 8e-05 gi|258652561|ref|YP_003201717.1| short-chain dehydrogenase/reduc... 50.4 9e-05 gi|120405112|ref|YP_954941.1| short-chain dehydrogenase/reductas... 50.4 9e-05 gi|120404368|ref|YP_954197.1| short chain dehydrogenase [Mycobac... 50.4 9e-05 gi|315443544|ref|YP_004076423.1| hypothetical protein Mspyr1_192... 50.4 1e-04 gi|158316549|ref|YP_001509057.1| short-chain dehydrogenase/reduc... 50.4 1e-04 gi|41406763|ref|NP_959599.1| hypothetical protein MAP0665c [Myco... 50.1 1e-04 gi|288923330|ref|ZP_06417463.1| short-chain dehydrogenase/reduct... 50.1 1e-04 gi|254773738|ref|ZP_05215254.1| carveol dehydrogenase [Mycobacte... 50.1 1e-04 gi|145223087|ref|YP_001133765.1| short-chain dehydrogenase/reduc... 50.1 1e-04 gi|118463161|ref|YP_880115.1| carveol dehydrogenase [Mycobacteri... 50.1 1e-04 gi|336461107|gb|EGO39986.1| oxidoreductase, SDR family [Mycobact... 50.1 1e-04 gi|325674829|ref|ZP_08154516.1| carveol dehydrogenase ((+)-trans... 50.1 1e-04 gi|342860315|ref|ZP_08716966.1| carveol dehydrogenase [Mycobacte... 50.1 1e-04 gi|254820513|ref|ZP_05225514.1| carveol dehydrogenase [Mycobacte... 50.1 1e-04 gi|296169453|ref|ZP_06851073.1| carveol dehydrogenase ((+)-trans... 50.1 1e-04 gi|254818817|ref|ZP_05223818.1| carveol dehydrogenase [Mycobacte... 49.7 1e-04 gi|118467690|ref|YP_890040.1| short chain dehydrogenase [Mycobac... 49.7 1e-04 gi|342857660|ref|ZP_08714316.1| short-chain dehydrogenase/reduct... 49.7 1e-04 gi|288922512|ref|ZP_06416695.1| short-chain dehydrogenase/reduct... 49.7 2e-04 gi|226361191|ref|YP_002778969.1| oxidoreductase [Rhodococcus opa... 49.7 2e-04 gi|118463724|ref|YP_882728.1| short chain dehydrogenase [Mycobac... 49.7 2e-04 gi|288916779|ref|ZP_06411153.1| short-chain dehydrogenase/reduct... 49.3 2e-04 gi|118462824|ref|YP_879761.1| carveol dehydrogenase [Mycobacteri... 49.3 2e-04 >gi|15841471|ref|NP_336508.1| hypothetical protein MT2045.1 [Mycobacterium tuberculosis CDC1551] gi|31793170|ref|NP_855663.1| dehydrogenase [Mycobacterium bovis AF2122/97] gi|57116934|ref|YP_177656.1| dehydrogenase [Mycobacterium tuberculosis H37Rv] 65 more sequence titles Length=111 Score = 210 bits (534), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 110/111 (99%), Positives = 111/111 (100%), Gaps = 0/111 (0%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACGALVGEVEVWGRDVRDDR 60 +GRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACGALVGEVEVWGRDVRDDR Sbjct 1 MGRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACGALVGEVEVWGRDVRDDR 60 Query 61 RVFVESPADEFGACRRVARQGIRVVGLPVSQRELVEPEAGCAARRSAAGSQ 111 RVFVESPADEFGACRRVARQGIRVVGLPVSQRELVEPEAGCAARRSAAGSQ Sbjct 61 RVFVESPADEFGACRRVARQGIRVVGLPVSQRELVEPEAGCAARRSAAGSQ 111 >gi|312198467|ref|YP_004018528.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EuI1c] gi|311229803|gb|ADP82658.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EuI1c] Length=279 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/84 (48%), Positives = 49/84 (59%), Gaps = 15/84 (17%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACGALVGEVEVWGRDVRDDRR 61 GR+EGKVAFITGVARGQGR+HA+RLA+ A +G VD L+GEV D Sbjct 3 GRVEGKVAFITGVARGQGRAHAIRLAEEGADIIG-VD------LLGEV--------DTVD 47 Query 62 VFVESPADEFGACRRVARQGIRVV 85 + +P D VAR G R+V Sbjct 48 YPMATPDDLAETTAAVARLGRRIV 71 >gi|342857740|ref|ZP_08714396.1| oxidoreductase [Mycobacterium colombiense CECT 3035] gi|342135073|gb|EGT88239.1| oxidoreductase [Mycobacterium colombiense CECT 3035] Length=279 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/35 (75%), Positives = 31/35 (89%), Gaps = 0/35 (0%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALG 35 +GR++GKVAFITGVARGQGRSHAVRLA+ A +G Sbjct 1 MGRVQGKVAFITGVARGQGRSHAVRLAEEGADIIG 35 >gi|258652560|ref|YP_003201716.1| short-chain dehydrogenase/reductase SDR [Nakamurella multipartita DSM 44233] gi|258555785|gb|ACV78727.1| short-chain dehydrogenase/reductase SDR [Nakamurella multipartita DSM 44233] Length=268 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/93 (40%), Positives = 47/93 (51%), Gaps = 15/93 (16%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACGALVGEVEVWGRDVRDDR 60 +GR+EGKVAFITG ARGQGRSHAVRLA+ A + V+ C L D Sbjct 1 MGRVEGKVAFITGAARGQGRSHAVRLAEEGADIIA---VDICAQL------------DTV 45 Query 61 RVFVESPADEFGACRRVARQGIRVVGLPVSQRE 93 + +P D + V R+V LP R+ Sbjct 46 PYPMATPEDLAQTVKEVEALDRRIVALPADVRD 78 >gi|111219809|ref|YP_710603.1| carveol dehydrogenase [Frankia alni ACN14a] gi|111147341|emb|CAJ58992.1| Carveol dehydrogenase [Frankia alni ACN14a] Length=288 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/26 (97%), Positives = 25/26 (97%), Gaps = 0/26 (0%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLA 27 GRLEGKVAFITG ARGQGRSHAVRLA Sbjct 3 GRLEGKVAFITGAARGQGRSHAVRLA 28 >gi|145222181|ref|YP_001132859.1| short-chain dehydrogenase/reductase SDR [Mycobacterium gilvum PYR-GCK] gi|315442619|ref|YP_004075498.1| hypothetical protein Mspyr1_09740 [Mycobacterium sp. Spyr1] gi|145214667|gb|ABP44071.1| short-chain dehydrogenase/reductase SDR [Mycobacterium gilvum PYR-GCK] gi|315260922|gb|ADT97663.1| dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein [Mycobacterium sp. Spyr1] Length=279 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 3/50 (6%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACGALVGEVEV 51 GR+EGKVAFITG ARGQGRSHAVRLA+ A + ++ CG + ++ Sbjct 3 GRVEGKVAFITGAARGQGRSHAVRLAEEGADIIA---IDVCGPISTHTDI 49 >gi|120406116|ref|YP_955945.1| short-chain dehydrogenase/reductase SDR [Mycobacterium vanbaalenii PYR-1] gi|119958934|gb|ABM15939.1| short-chain dehydrogenase/reductase SDR [Mycobacterium vanbaalenii PYR-1] Length=279 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 3/50 (6%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACGALVGEVEV 51 GR+EGKVAFITG ARGQGRSHAVRLA+ A + ++ CG + ++ Sbjct 3 GRVEGKVAFITGAARGQGRSHAVRLAEEGADIIA---IDVCGPISTHTDI 49 >gi|126432932|ref|YP_001068623.1| short-chain dehydrogenase/reductase SDR [Mycobacterium sp. JLS] gi|126232732|gb|ABN96132.1| short-chain dehydrogenase/reductase SDR [Mycobacterium sp. JLS] Length=279 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 3/50 (6%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACGALVGEVEV 51 GR++GKVAFITG ARGQGRSHAVRLA+ A + V+ CG + ++ Sbjct 3 GRVDGKVAFITGAARGQGRSHAVRLAEEGADIIA---VDVCGPISSHTDI 49 >gi|108797310|ref|YP_637507.1| short-chain dehydrogenase/reductase SDR [Mycobacterium sp. MCS] gi|119866395|ref|YP_936347.1| short-chain dehydrogenase/reductase SDR [Mycobacterium sp. KMS] gi|108767729|gb|ABG06451.1| short-chain dehydrogenase/reductase SDR [Mycobacterium sp. MCS] gi|119692484|gb|ABL89557.1| short-chain dehydrogenase/reductase SDR [Mycobacterium sp. KMS] Length=279 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 3/50 (6%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACGALVGEVEV 51 GR++GKVAFITG ARGQGRSHAVRLA+ A + V+ CG + ++ Sbjct 3 GRVDGKVAFITGAARGQGRSHAVRLAEEGADIIA---VDVCGPISSHTDI 49 >gi|296169450|ref|ZP_06851070.1| short-chain dehydrogenase/reductase family oxidoreductase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895716|gb|EFG75411.1| short-chain dehydrogenase/reductase family oxidoreductase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=276 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/67 (51%), Positives = 42/67 (63%), Gaps = 4/67 (5%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACGALVGE-VEVWGRDVRDD 59 +G LEGKVAFITGVARGQGRSHAVRLA A +G ++ C + + GRD D+ Sbjct 1 MGGLEGKVAFITGVARGQGRSHAVRLARDGADIIG---IDICADIPANGYAMAGRDELDE 57 Query 60 RRVFVES 66 VE+ Sbjct 58 TVGLVEA 64 >gi|240173183|ref|ZP_04751841.1| short-chain type dehydrogenase/reductase [Mycobacterium kansasii ATCC 12478] Length=283 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/97 (38%), Positives = 48/97 (50%), Gaps = 15/97 (15%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACGALVGEVEVWGRDVRD--- 58 GR+EGKVAFITG ARGQGRSHAVRLA A + V+ C +V + D Sbjct 7 GRVEGKVAFITGAARGQGRSHAVRLAQEGADIIA---VDVCKPIVANTTIPASTPEDLAE 63 Query 59 --------DRRVFV-ESPADEFGACRRVARQGIRVVG 86 +RR+F E ++ A + G+ +G Sbjct 64 TADLVKGHNRRIFTAEVDVRDYDALKAAVDTGVEQLG 100 >gi|288922710|ref|ZP_06416882.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EUN1f] gi|288345929|gb|EFC80286.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EUN1f] Length=275 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/92 (41%), Positives = 50/92 (55%), Gaps = 12/92 (13%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACGALVGEVEVWGRDVRD-- 58 +GRLEGKVAF+TG ARGQGRSHA++LA A + VDV A V D+++ Sbjct 1 MGRLEGKVAFVTGAARGQGRSHALKLAAEGANIIA-VDVSEQVATVPYPTATANDLKETV 59 Query 59 ------DRRVFVESPAD--EFGACRRVARQGI 82 DRR+ + AD + A + V G+ Sbjct 60 RLVEALDRRIIADQ-ADVRDLAALKNVVDVGV 90 >gi|333989056|ref|YP_004521670.1| short-chain dehydrogenase [Mycobacterium sp. JDM601] gi|333485024|gb|AEF34416.1| short chain dehydrogenase [Mycobacterium sp. JDM601] Length=276 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/67 (50%), Positives = 40/67 (60%), Gaps = 4/67 (5%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACGALVGEVEVWG-RDVRDD 59 +G L+GKVAFITG ARGQGRSHAVRLA A +G V+ C + G RD D+ Sbjct 1 MGSLDGKVAFITGAARGQGRSHAVRLAADGADIIG---VDICADIASNGYPMGSRDELDE 57 Query 60 RRVFVES 66 VE+ Sbjct 58 TVALVEA 64 >gi|342858472|ref|ZP_08715127.1| short chain dehydrogenase [Mycobacterium colombiense CECT 3035] gi|342134176|gb|EGT87356.1| short chain dehydrogenase [Mycobacterium colombiense CECT 3035] Length=276 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/39 (70%), Positives = 32/39 (83%), Gaps = 1/39 (2%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDV 39 +G L+GKVAFITGVARGQGRSHAVRLA A +G +D+ Sbjct 1 MGSLDGKVAFITGVARGQGRSHAVRLAREGANIIG-IDI 38 >gi|111017396|ref|YP_700368.1| carveol dehydrogenase [Rhodococcus jostii RHA1] gi|110816926|gb|ABG92210.1| probable carveol dehydrogenase [Rhodococcus jostii RHA1] Length=274 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/28 (86%), Positives = 27/28 (97%), Gaps = 0/28 (0%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLAD 28 +GRL+GKVAFITG ARGQGRSHAVRLA+ Sbjct 1 MGRLDGKVAFITGAARGQGRSHAVRLAE 28 >gi|312200187|ref|YP_004020248.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EuI1c] gi|311231523|gb|ADP84378.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EuI1c] Length=287 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/120 (41%), Positives = 61/120 (51%), Gaps = 29/120 (24%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDV--------------EACGALV 46 +G+LEGKVAFITG RGQGRSHAV LA G+ + VD+ E V Sbjct 1 MGKLEGKVAFITGAGRGQGRSHAVTLA-GEGADIIAVDICEDIPTVNYEMASAEDLAQTV 59 Query 47 GEVEVWGRD---VRDDRRVF--VESPADE----FGACRRV-ARQGIRVVGLPVSQRELVE 96 EVE GR V+ D RV ++S D+ FG V A GI LP++ R L+E Sbjct 60 KEVEATGRSIVAVKADVRVKEQLKSALDQGLARFGRVDIVCANAGI----LPMNDRTLIE 115 >gi|254818536|ref|ZP_05223537.1| short chain dehydrogenase [Mycobacterium intracellulare ATCC 13950] Length=276 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/39 (70%), Positives = 32/39 (83%), Gaps = 1/39 (2%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDV 39 +G L+GKVAFITGVARGQGRSHAVRLA A +G +D+ Sbjct 1 MGSLDGKVAFITGVARGQGRSHAVRLAREGANIIG-IDI 38 >gi|312194458|ref|YP_004014519.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EuI1c] gi|311225794|gb|ADP78649.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EuI1c] Length=272 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/39 (67%), Positives = 33/39 (85%), Gaps = 1/39 (2%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDV 39 +G+L+GKVAFITG ARGQGRSHAVRLA+ A +G +D+ Sbjct 1 MGKLDGKVAFITGAARGQGRSHAVRLAEEGADIIG-IDI 38 >gi|312197762|ref|YP_004017823.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EuI1c] gi|311229098|gb|ADP81953.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EuI1c] Length=283 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/27 (86%), Positives = 26/27 (97%), Gaps = 0/27 (0%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLA 27 +G+LEGKVAFITG ARGQGRSHA+RLA Sbjct 1 MGKLEGKVAFITGAARGQGRSHAIRLA 27 >gi|108800643|ref|YP_640840.1| short-chain dehydrogenase/reductase SDR [Mycobacterium sp. MCS] gi|119869782|ref|YP_939734.1| short-chain dehydrogenase/reductase SDR [Mycobacterium sp. KMS] gi|126436267|ref|YP_001071958.1| short-chain dehydrogenase/reductase SDR [Mycobacterium sp. JLS] gi|108771062|gb|ABG09784.1| short-chain dehydrogenase/reductase SDR [Mycobacterium sp. MCS] gi|119695871|gb|ABL92944.1| short-chain dehydrogenase/reductase SDR [Mycobacterium sp. KMS] gi|126236067|gb|ABN99467.1| short-chain dehydrogenase/reductase SDR [Mycobacterium sp. JLS] Length=286 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/28 (83%), Positives = 27/28 (97%), Gaps = 0/28 (0%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLAD 28 +GR+EGKVAFITG ARGQGRSHA+RLA+ Sbjct 1 MGRVEGKVAFITGAARGQGRSHAIRLAE 28 >gi|108797315|ref|YP_637512.1| short chain dehydrogenase [Mycobacterium sp. MCS] gi|119866400|ref|YP_936352.1| short chain dehydrogenase [Mycobacterium sp. KMS] gi|108767734|gb|ABG06456.1| short-chain dehydrogenase/reductase SDR [Mycobacterium sp. MCS] gi|119692489|gb|ABL89562.1| short-chain dehydrogenase/reductase SDR [Mycobacterium sp. KMS] Length=276 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/69 (48%), Positives = 41/69 (60%), Gaps = 8/69 (11%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGK---VDVEACGALVGEVEVWGRDVR 57 +G L+GKVAFITG ARGQGRSHAVRLA A +G D+E+ G + RD Sbjct 1 MGSLDGKVAFITGAARGQGRSHAVRLAADGADIIGVDICADIESNG-----YPMATRDEL 55 Query 58 DDRRVFVES 66 D+ VE+ Sbjct 56 DETVALVEA 64 >gi|41408877|ref|NP_961713.1| short chain dehydrogenase [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397236|gb|AAS05096.1| hypothetical protein MAP_2779 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336458843|gb|EGO37800.1| oxidoreductase, SDR family [Mycobacterium avium subsp. paratuberculosis S397] Length=276 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/39 (70%), Positives = 32/39 (83%), Gaps = 1/39 (2%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDV 39 +G L+GKVAFITGVARGQGRSHAVRLA A +G +D+ Sbjct 1 MGSLDGKVAFITGVARGQGRSHAVRLAREGANIIG-IDI 38 >gi|145222494|ref|YP_001133172.1| short chain dehydrogenase [Mycobacterium gilvum PYR-GCK] gi|315442941|ref|YP_004075820.1| hypothetical protein Mspyr1_13060 [Mycobacterium sp. Spyr1] gi|145214980|gb|ABP44384.1| short-chain dehydrogenase/reductase SDR [Mycobacterium gilvum PYR-GCK] gi|315261244|gb|ADT97985.1| dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein [Mycobacterium sp. Spyr1] Length=276 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/97 (40%), Positives = 50/97 (52%), Gaps = 14/97 (14%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACGAL-VGEVEVWGRDVRDD 59 +G L+G+VAFITGVARGQGRSHA+RLA A +G V+ C + + R D+ Sbjct 1 MGSLDGRVAFITGVARGQGRSHAIRLASEGAEIIG---VDICADIEANRYPLASRAELDE 57 Query 60 RRVFVESP--------AD--EFGACRRVARQGIRVVG 86 VES AD +FGA + G+ G Sbjct 58 TVALVESAGGKMLGSVADVRDFGALKSAVDAGVEHFG 94 >gi|158315062|ref|YP_001507570.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EAN1pec] gi|158110467|gb|ABW12664.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EAN1pec] Length=271 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/27 (86%), Positives = 26/27 (97%), Gaps = 0/27 (0%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLA 27 +G+LEGKVAFITG ARGQGRSHA+RLA Sbjct 1 MGKLEGKVAFITGAARGQGRSHAIRLA 27 >gi|312195176|ref|YP_004015237.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EuI1c] gi|311226512|gb|ADP79367.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EuI1c] Length=283 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/27 (86%), Positives = 26/27 (97%), Gaps = 0/27 (0%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLA 27 +G+L+GKVAFITG ARGQGRSHAVRLA Sbjct 1 MGKLDGKVAFITGAARGQGRSHAVRLA 27 >gi|118468672|ref|YP_890256.1| carveol dehydrogenase [Mycobacterium smegmatis str. MC2 155] gi|302595982|sp|A0R518.1|Y6031_MYCS2 RecName: Full=Putative short-chain type dehydrogenase/reductase MSMEG_6031 gi|118169959|gb|ABK70855.1| carveol dehydrogenase [Mycobacterium smegmatis str. MC2 155] Length=279 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/27 (89%), Positives = 26/27 (97%), Gaps = 0/27 (0%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLAD 28 GR+EGKVAFITG ARGQGRSHAVRLA+ Sbjct 3 GRVEGKVAFITGAARGQGRSHAVRLAE 29 >gi|126432937|ref|YP_001068628.1| short chain dehydrogenase [Mycobacterium sp. JLS] gi|126232737|gb|ABN96137.1| short-chain dehydrogenase/reductase SDR [Mycobacterium sp. JLS] Length=276 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/46 (61%), Positives = 33/46 (72%), Gaps = 3/46 (6%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGK---VDVEACG 43 +G L+GKVAFITG ARGQGRSHAVRLA A +G D+E+ G Sbjct 1 MGSLDGKVAFITGAARGQGRSHAVRLAADGADIIGVDICADIESNG 46 >gi|258652561|ref|YP_003201717.1| short-chain dehydrogenase/reductase SDR [Nakamurella multipartita DSM 44233] gi|258555786|gb|ACV78728.1| short-chain dehydrogenase/reductase SDR [Nakamurella multipartita DSM 44233] Length=277 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/28 (83%), Positives = 27/28 (97%), Gaps = 0/28 (0%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLAD 28 +GR+EGKVAF+TG ARGQGRSHAVRLA+ Sbjct 1 MGRVEGKVAFVTGAARGQGRSHAVRLAE 28 >gi|120405112|ref|YP_954941.1| short-chain dehydrogenase/reductase SDR [Mycobacterium vanbaalenii PYR-1] gi|119957930|gb|ABM14935.1| short-chain dehydrogenase/reductase SDR [Mycobacterium vanbaalenii PYR-1] Length=286 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/28 (83%), Positives = 27/28 (97%), Gaps = 0/28 (0%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLAD 28 +GR++GKVAFITG ARGQGRSHAVRLA+ Sbjct 1 MGRVQGKVAFITGAARGQGRSHAVRLAE 28 >gi|120404368|ref|YP_954197.1| short chain dehydrogenase [Mycobacterium vanbaalenii PYR-1] gi|119957186|gb|ABM14191.1| short-chain dehydrogenase/reductase SDR [Mycobacterium vanbaalenii PYR-1] Length=276 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/39 (70%), Positives = 32/39 (83%), Gaps = 1/39 (2%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDV 39 +G L+G+VAFITGVARGQGRSHAVRLA A +G VD+ Sbjct 1 MGSLDGRVAFITGVARGQGRSHAVRLAADGADIIG-VDI 38 >gi|315443544|ref|YP_004076423.1| hypothetical protein Mspyr1_19270 [Mycobacterium sp. Spyr1] gi|315261847|gb|ADT98588.1| dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein [Mycobacterium sp. Spyr1] Length=286 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/28 (83%), Positives = 27/28 (97%), Gaps = 0/28 (0%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLAD 28 +GR++GKVAFITG ARGQGRSHAVRLA+ Sbjct 1 MGRVQGKVAFITGAARGQGRSHAVRLAE 28 >gi|158316549|ref|YP_001509057.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EAN1pec] gi|158111954|gb|ABW14151.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EAN1pec] Length=271 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/27 (86%), Positives = 26/27 (97%), Gaps = 0/27 (0%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLA 27 +G+L+GKVAFITG ARGQGRSHAVRLA Sbjct 1 MGKLDGKVAFITGAARGQGRSHAVRLA 27 >gi|41406763|ref|NP_959599.1| hypothetical protein MAP0665c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395113|gb|AAS02982.1| hypothetical protein MAP_0665c [Mycobacterium avium subsp. paratuberculosis K-10] Length=279 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/26 (93%), Positives = 25/26 (97%), Gaps = 0/26 (0%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLA 27 GR+EGKVAFITG ARGQGRSHAVRLA Sbjct 3 GRVEGKVAFITGAARGQGRSHAVRLA 28 >gi|288923330|ref|ZP_06417463.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EUN1f] gi|288345321|gb|EFC79717.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EUN1f] Length=272 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/28 (79%), Positives = 27/28 (97%), Gaps = 0/28 (0%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLAD 28 +G+L+GKVAFITG ARGQGRSHA+RLA+ Sbjct 1 MGKLDGKVAFITGAARGQGRSHAIRLAE 28 >gi|254773738|ref|ZP_05215254.1| carveol dehydrogenase [Mycobacterium avium subsp. avium ATCC 25291] Length=279 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/26 (93%), Positives = 25/26 (97%), Gaps = 0/26 (0%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLA 27 GR+EGKVAFITG ARGQGRSHAVRLA Sbjct 3 GRVEGKVAFITGAARGQGRSHAVRLA 28 >gi|145223087|ref|YP_001133765.1| short-chain dehydrogenase/reductase SDR [Mycobacterium gilvum PYR-GCK] gi|145215573|gb|ABP44977.1| short-chain dehydrogenase/reductase SDR [Mycobacterium gilvum PYR-GCK] Length=286 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/28 (83%), Positives = 27/28 (97%), Gaps = 0/28 (0%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLAD 28 +GR++GKVAFITG ARGQGRSHAVRLA+ Sbjct 1 MGRVQGKVAFITGAARGQGRSHAVRLAE 28 >gi|118463161|ref|YP_880115.1| carveol dehydrogenase [Mycobacterium avium 104] gi|118164448|gb|ABK65345.1| carveol dehydrogenase [Mycobacterium avium 104] Length=279 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/26 (93%), Positives = 25/26 (97%), Gaps = 0/26 (0%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLA 27 GR+EGKVAFITG ARGQGRSHAVRLA Sbjct 3 GRVEGKVAFITGAARGQGRSHAVRLA 28 >gi|336461107|gb|EGO39986.1| oxidoreductase, SDR family [Mycobacterium avium subsp. paratuberculosis S397] Length=279 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/26 (93%), Positives = 25/26 (97%), Gaps = 0/26 (0%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLA 27 GR+EGKVAFITG ARGQGRSHAVRLA Sbjct 3 GRVEGKVAFITGAARGQGRSHAVRLA 28 >gi|325674829|ref|ZP_08154516.1| carveol dehydrogenase ((+)-trans-carveol dehydrogenase) [Rhodococcus equi ATCC 33707] gi|325554415|gb|EGD24090.1| carveol dehydrogenase ((+)-trans-carveol dehydrogenase) [Rhodococcus equi ATCC 33707] Length=291 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/104 (38%), Positives = 50/104 (49%), Gaps = 15/104 (14%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACGALVGEVEVWGRDVRDDR 60 GR+ GKVAFITG ARGQGRSHAVRLA A + V+ CG DV Sbjct 13 TGRVAGKVAFITGAARGQGRSHAVRLAQEGADIIA---VDVCG-----------DVGRTS 58 Query 61 RVFVESPADEFG-ACRRVARQGIRVVGLPVSQRELVEPEAGCAA 103 + + ++ R V ++G R+V R+ EAG A Sbjct 59 DFYAPATDEDLAETVRLVEKEGRRIVAYKADVRDYDALEAGLTA 102 >gi|342860315|ref|ZP_08716966.1| carveol dehydrogenase [Mycobacterium colombiense CECT 3035] gi|342131970|gb|EGT85211.1| carveol dehydrogenase [Mycobacterium colombiense CECT 3035] Length=279 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/26 (93%), Positives = 25/26 (97%), Gaps = 0/26 (0%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLA 27 GR+EGKVAFITG ARGQGRSHAVRLA Sbjct 3 GRVEGKVAFITGAARGQGRSHAVRLA 28 >gi|254820513|ref|ZP_05225514.1| carveol dehydrogenase [Mycobacterium intracellulare ATCC 13950] Length=279 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/26 (93%), Positives = 25/26 (97%), Gaps = 0/26 (0%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLA 27 GR+EGKVAFITG ARGQGRSHAVRLA Sbjct 3 GRVEGKVAFITGAARGQGRSHAVRLA 28 >gi|296169453|ref|ZP_06851073.1| carveol dehydrogenase ((+)-trans-carveol dehydrogenase) [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895719|gb|EFG75414.1| carveol dehydrogenase ((+)-trans-carveol dehydrogenase) [Mycobacterium parascrofulaceum ATCC BAA-614] Length=279 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/26 (93%), Positives = 25/26 (97%), Gaps = 0/26 (0%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLA 27 GR+EGKVAFITG ARGQGRSHAVRLA Sbjct 3 GRVEGKVAFITGAARGQGRSHAVRLA 28 >gi|254818817|ref|ZP_05223818.1| carveol dehydrogenase [Mycobacterium intracellulare ATCC 13950] Length=278 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/44 (60%), Positives = 32/44 (73%), Gaps = 3/44 (6%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACGAL 45 GR+EGKVAFI+G ARGQGRSHAVRLA A + ++ CG + Sbjct 3 GRVEGKVAFISGAARGQGRSHAVRLAQEGADIIA---IDVCGPI 43 >gi|118467690|ref|YP_890040.1| short chain dehydrogenase [Mycobacterium smegmatis str. MC2 155] gi|118168977|gb|ABK69873.1| carveol dehydrogenase [Mycobacterium smegmatis str. MC2 155] Length=276 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/63 (54%), Positives = 41/63 (66%), Gaps = 2/63 (3%) Query 4 LEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACGALVGEVEVWGRDVRDDRRVF 63 L+GKVAFITG ARGQGRSHAVRLA A +G VD+ A A G + GR+ D+ Sbjct 4 LDGKVAFITGAARGQGRSHAVRLASEGADIIG-VDICADIASAG-YPMAGREELDETVAL 61 Query 64 VES 66 VE+ Sbjct 62 VEA 64 >gi|342857660|ref|ZP_08714316.1| short-chain dehydrogenase/reductase SDR [Mycobacterium colombiense CECT 3035] gi|342134993|gb|EGT88159.1| short-chain dehydrogenase/reductase SDR [Mycobacterium colombiense CECT 3035] Length=278 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/26 (89%), Positives = 25/26 (97%), Gaps = 0/26 (0%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLA 27 GR++GKVAFITG ARGQGRSHAVRLA Sbjct 3 GRVDGKVAFITGAARGQGRSHAVRLA 28 >gi|288922512|ref|ZP_06416695.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EUN1f] gi|288346138|gb|EFC80484.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EUN1f] Length=282 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/39 (62%), Positives = 32/39 (83%), Gaps = 1/39 (2%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDV 39 +G+L+GKV FITG ARGQGRSHA+RLA G+ ++ VD+ Sbjct 1 MGKLDGKVVFITGAARGQGRSHAIRLA-GEGASVIAVDI 38 >gi|226361191|ref|YP_002778969.1| oxidoreductase [Rhodococcus opacus B4] gi|226239676|dbj|BAH50024.1| oxidoreductase [Rhodococcus opacus B4] Length=274 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/26 (85%), Positives = 25/26 (97%), Gaps = 0/26 (0%) Query 3 RLEGKVAFITGVARGQGRSHAVRLAD 28 RLEGKVAF+TG ARGQGRSHA+RLA+ Sbjct 3 RLEGKVAFVTGAARGQGRSHAIRLAE 28 >gi|118463724|ref|YP_882728.1| short chain dehydrogenase [Mycobacterium avium 104] gi|118165011|gb|ABK65908.1| carveol dehydrogenase [Mycobacterium avium 104] Length=276 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/39 (67%), Positives = 31/39 (80%), Gaps = 1/39 (2%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDV 39 +G L+GKVAFITG ARGQGRSHAVRLA A +G +D+ Sbjct 1 MGSLDGKVAFITGAARGQGRSHAVRLAREGANIIG-IDI 38 >gi|288916779|ref|ZP_06411153.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EUN1f] gi|288351853|gb|EFC86056.1| short-chain dehydrogenase/reductase SDR [Frankia sp. EUN1f] Length=271 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/43 (61%), Positives = 32/43 (75%), Gaps = 3/43 (6%) Query 1 VGRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDVEACG 43 +G+L+GKVAFITG ARGQGRSHA+RLA A + V+ CG Sbjct 1 MGKLDGKVAFITGAARGQGRSHALRLAQEGADIIA---VDLCG 40 >gi|118462824|ref|YP_879761.1| carveol dehydrogenase [Mycobacterium avium 104] gi|118164111|gb|ABK65008.1| carveol dehydrogenase [Mycobacterium avium 104] Length=285 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/38 (66%), Positives = 32/38 (85%), Gaps = 1/38 (2%) Query 2 GRLEGKVAFITGVARGQGRSHAVRLADGQARALGKVDV 39 GR+EGKV FITG+A+GQGR+HAVRLA+ A +G +DV Sbjct 3 GRVEGKVVFITGLAKGQGRAHAVRLAEEGADIIG-IDV 39 Lambda K H 0.321 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 128534824512 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40