BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1990c
Length=113
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609127|ref|NP_216506.1| transcriptional regulatory protein ... 227 4e-58
gi|126437110|ref|YP_001072801.1| putative transcriptional regula... 213 5e-54
gi|119854992|ref|YP_935597.1| putative transcriptional regulator... 209 1e-52
gi|289758103|ref|ZP_06517481.1| conserved hypothetical protein [... 181 3e-44
gi|262118137|ref|YP_003275907.1| hypothetical protein Gbro_4901 ... 71.2 5e-11
gi|90421959|ref|YP_530329.1| hypothetical protein RPC_0435 [Rhod... 70.1 9e-11
gi|296444469|ref|ZP_06886434.1| conserved hypothetical protein [... 67.0 8e-10
gi|283778089|ref|YP_003368844.1| hypothetical protein Psta_0293 ... 59.7 1e-07
gi|83592121|ref|YP_425873.1| hypothetical protein Rru_A0782 [Rho... 55.8 2e-06
gi|15610324|ref|NP_217704.1| hypothetical protein Rv3188 [Mycoba... 48.5 3e-04
gi|339783433|gb|AEK09148.1| gp52 [Mycobacterium phage Ibhubesi] 48.1 4e-04
gi|296124199|ref|YP_003631977.1| hypothetical protein Plim_3967 ... 47.0 9e-04
gi|50955725|ref|YP_063013.1| hypothetical protein Lxx22360 [Leif... 46.2 0.002
gi|145223460|ref|YP_001134138.1| hypothetical protein Mflv_2873 ... 41.6 0.040
gi|255533199|ref|YP_003093571.1| hypothetical protein Phep_3315 ... 40.8 0.061
gi|258646905|ref|ZP_05734374.1| toxin-antitoxin system, antitoxi... 38.9 0.25
gi|340752025|ref|ZP_08688835.1| transcriptional regulator [Fusob... 38.5 0.29
gi|225378570|ref|ZP_03755791.1| hypothetical protein ROSEINA2194... 38.5 0.31
gi|291619582|ref|YP_003522324.1| hypothetical Protein PANA_4029 ... 38.1 0.48
gi|327396702|dbj|BAK14123.1| hypothetical protein PAJ_p0256 [Pan... 37.7 0.55
gi|114319748|ref|YP_741431.1| XRE family transcriptional regulat... 37.7 0.58
gi|217975711|ref|YP_002360310.1| putative phage repressor [Shewa... 37.0 0.84
gi|298717116|ref|YP_003729758.1| hypothetical protein Pvag_pPag3... 37.0 1.0
gi|121534633|ref|ZP_01666455.1| transcriptional regulator, XRE f... 36.6 1.1
gi|222055909|ref|YP_002538271.1| hypothetical protein Geob_2824 ... 36.6 1.1
gi|296132417|ref|YP_003639664.1| transcriptional regulator, XRE ... 36.6 1.3
gi|115378362|ref|ZP_01465526.1| transcriptional regulator [Stigm... 36.6 1.4
gi|224542005|ref|ZP_03682544.1| hypothetical protein CATMIT_0117... 36.2 1.5
gi|293400017|ref|ZP_06644163.1| toxin-antitoxin system, antitoxi... 36.2 1.5
gi|257883388|ref|ZP_05663041.1| hypothetical protein EFQG_02522 ... 36.2 1.6
gi|37521112|ref|NP_924489.1| hypothetical protein glr1543 [Gloeo... 36.2 1.7
gi|209808838|ref|YP_002274409.1| Cro/CI family transcriptional r... 36.2 1.8
gi|343513085|ref|ZP_08750197.1| putative ribosomal large chain p... 36.2 1.8
gi|162448119|ref|YP_001621251.1| membrane-anchored DNA-binding p... 36.2 1.8
gi|329768028|ref|ZP_08259539.1| hypothetical protein HMPREF0428_... 35.8 2.0
gi|336171415|ref|YP_004578553.1| hypothetical protein Lacal_0272... 35.8 2.3
gi|50121728|ref|YP_050895.1| hypothetical protein ECA2804 [Pecto... 35.8 2.3
gi|343514551|ref|ZP_08751620.1| putative ribosomal large chain p... 35.8 2.4
gi|294631390|ref|ZP_06709950.1| xre family toxin-antitoxin syste... 35.4 2.5
gi|190015863|ref|YP_001965072.1| hypothetical protein pRL1.2 [St... 35.4 3.0
gi|257413954|ref|ZP_04744773.2| transcriptional regulator [Roseb... 35.4 3.0
gi|329119145|ref|ZP_08247836.1| helix-turn-helix domain protein ... 35.4 3.1
gi|293378033|ref|ZP_06624210.1| DNA-binding protein [Enterococcu... 35.0 3.4
gi|227552269|ref|ZP_03982318.1| transcriptional regulator [Enter... 35.0 3.5
gi|167755003|ref|ZP_02427130.1| hypothetical protein CLORAM_0050... 35.0 3.5
gi|237735272|ref|ZP_04565753.1| transcriptional regulator [Molli... 35.0 3.6
gi|302875363|ref|YP_003843996.1| helix-turn-helix domain-contain... 35.0 4.1
gi|238549613|dbj|BAH65964.1| conserved hypothetical protein [Kle... 34.7 4.2
gi|317048091|ref|YP_004115739.1| hypothetical protein Pat9b_1867... 34.7 4.2
gi|168998600|ref|YP_001687868.1| hypothetical protein pK2044_001... 34.7 4.2
>gi|15609127|ref|NP_216506.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15841469|ref|NP_336506.1| hypothetical protein MT2044 [Mycobacterium tuberculosis CDC1551]
gi|31793169|ref|NP_855662.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=113
Score = 227 bits (579), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 113/113 (100%), Positives = 113/113 (100%), Gaps = 0/113 (0%)
Query 1 MGVNVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVA 60
MGVNVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVA
Sbjct 1 MGVNVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVA 60
Query 61 DALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV 113
DALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV
Sbjct 61 DALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV 113
>gi|126437110|ref|YP_001072801.1| putative transcriptional regulatory protein [Mycobacterium sp.
JLS]
gi|126437139|ref|YP_001072830.1| putative transcriptional regulatory protein [Mycobacterium sp.
JLS]
gi|126236910|gb|ABO00311.1| putative transcriptional regulatory protein [Mycobacterium sp.
JLS]
gi|126236939|gb|ABO00340.1| putative transcriptional regulatory protein [Mycobacterium sp.
JLS]
Length=113
Score = 213 bits (543), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 105/113 (93%), Positives = 107/113 (95%), Gaps = 0/113 (0%)
Query 1 MGVNVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVA 60
MG N LASTVS AIERLGLTYEEVGDIVDAS RSVARWT+GQVVPQRLNKQRLIELAYVA
Sbjct 1 MGANALASTVSSAIERLGLTYEEVGDIVDASARSVARWTSGQVVPQRLNKQRLIELAYVA 60
Query 61 DALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV 113
DALAEVLPRDQANVWMFSPNRLL H KPADLVRDGEYQRVLALIDAMAEG+FV
Sbjct 61 DALAEVLPRDQANVWMFSPNRLLAHAKPADLVRDGEYQRVLALIDAMAEGIFV 113
>gi|119854992|ref|YP_935597.1| putative transcriptional regulatory protein [Mycobacterium sp.
KMS]
gi|145226006|ref|YP_001136660.1| putative transcriptional regulatory protein [Mycobacterium gilvum
PYR-GCK]
gi|119697710|gb|ABL94782.1| putative transcriptional regulatory protein [Mycobacterium sp.
KMS]
gi|145218469|gb|ABP47872.1| putative transcriptional regulatory protein [Mycobacterium gilvum
PYR-GCK]
Length=113
Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/113 (92%), Positives = 106/113 (94%), Gaps = 0/113 (0%)
Query 1 MGVNVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVA 60
MG N LASTVS AIERLGLTYEEVG IVDAS RSVARWT+GQVVPQRLNKQRLIELAYVA
Sbjct 1 MGANALASTVSSAIERLGLTYEEVGGIVDASARSVARWTSGQVVPQRLNKQRLIELAYVA 60
Query 61 DALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV 113
DAL+EVLPRDQANVWMFSPNRLL H KPADLVRDGEYQRVLALIDAMAEG+FV
Sbjct 61 DALSEVLPRDQANVWMFSPNRLLAHGKPADLVRDGEYQRVLALIDAMAEGIFV 113
>gi|289758103|ref|ZP_06517481.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289713667|gb|EFD77679.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=109
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 94/104 (91%), Positives = 94/104 (91%), Gaps = 1/104 (0%)
Query 10 VSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPR 69
GAIERLGLTYEEVGDIVDA A AGQVVPQRLNKQRLIELAYVADALAEVLPR
Sbjct 7 CRGAIERLGLTYEEVGDIVDARAFRGA-MNAGQVVPQRLNKQRLIELAYVADALAEVLPR 65
Query 70 DQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV 113
DQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV
Sbjct 66 DQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV 109
>gi|262118137|ref|YP_003275907.1| hypothetical protein Gbro_4901 [Gordonia bronchialis DSM 43247]
gi|262088047|gb|ACY24014.1| hypothetical protein Gbro_4901 [Gordonia bronchialis DSM 43247]
Length=107
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/95 (35%), Positives = 55/95 (58%), Gaps = 0/95 (0%)
Query 16 RLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQANVW 75
R GLT E+G + S RSV W +G+ P+ + RL+EL Y+ + L+EV + +W
Sbjct 10 RRGLTVGEIGGVTHVSERSVHNWASGKSRPEGEQRDRLLELKYIVEGLSEVYEDEGIEIW 69
Query 76 MFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEG 110
+ + R L + P +L+R+G++ VL +D +A G
Sbjct 70 LHARQRSLGGKSPLELLRNGQFDDVLEAVDRLAGG 104
>gi|90421959|ref|YP_530329.1| hypothetical protein RPC_0435 [Rhodopseudomonas palustris BisB18]
gi|90103973|gb|ABD86010.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length=112
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/96 (33%), Positives = 56/96 (59%), Gaps = 0/96 (0%)
Query 18 GLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQANVWMF 77
GL +++ +IV SP +V+RW++G+ P + + EL YV D LAE D+ +W+
Sbjct 17 GLQGKDIANIVAVSPATVSRWSSGKATPDLKTQTIIAELRYVVDRLAEFYTADETRLWLH 76
Query 78 SPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV 113
+P+ +L+ K DL+ G+ + VL +I+ + G +
Sbjct 77 TPHPMLDGEKAIDLINAGKTELVLGIIENLDSGAYT 112
>gi|296444469|ref|ZP_06886434.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
gi|296258116|gb|EFH05178.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
Length=112
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/111 (31%), Positives = 63/111 (57%), Gaps = 4/111 (3%)
Query 6 LASTVSGAIERL----GLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVAD 61
+A+ VS ++ L GL +++ +IV SP +V+RW+ G+ P + + EL YV D
Sbjct 1 MATAVSRILDHLRSDGGLQGKDIANIVAVSPATVSRWSNGKATPDLRTQTVIAELRYVVD 60
Query 62 ALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVF 112
L++ D+ +W+ + + +L + DL+ G + VLA+I+A+A G +
Sbjct 61 RLSDFYTPDETRLWLHAKHPMLNGERAIDLINSGRTEAVLAVIEALASGAY 111
>gi|283778089|ref|YP_003368844.1| hypothetical protein Psta_0293 [Pirellula staleyi DSM 6068]
gi|283436542|gb|ADB14984.1| hypothetical protein Psta_0293 [Pirellula staleyi DSM 6068]
Length=125
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/98 (34%), Positives = 56/98 (58%), Gaps = 1/98 (1%)
Query 7 ASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEV 66
A++V+ LGLT + + S R++A W AG+ ++QRL+E+ + +L EV
Sbjct 22 AASVADLRASLGLTRKLFSRLTGYSERAIAEWEAGKEQSDS-SRQRLMEIHRLRQSLVEV 80
Query 67 LPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALI 104
+P +Q VW+ +PN L+ KP +++ GE R+ LI
Sbjct 81 IPAEQIGVWLLAPNNALDGFKPLEVIERGEIDRIWRLI 118
>gi|83592121|ref|YP_425873.1| hypothetical protein Rru_A0782 [Rhodospirillum rubrum ATCC 11170]
gi|83575035|gb|ABC21586.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
Length=112
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/99 (29%), Positives = 53/99 (54%), Gaps = 0/99 (0%)
Query 15 ERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQANV 74
R GL ++ +IVD S +V+RW+ G+ P + + +L YV + L++ D+ +
Sbjct 14 SRGGLQGRDIANIVDVSTATVSRWSHGKGSPTIRTQTVIADLRYVVERLSDFYTADETRL 73
Query 75 WMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV 113
W+ S + LL + DL+ + VLA+I+ + G ++
Sbjct 74 WLHSHHPLLNGERAIDLINGDRTEDVLAVIERLDAGSYI 112
>gi|15610324|ref|NP_217704.1| hypothetical protein Rv3188 [Mycobacterium tuberculosis H37Rv]
gi|15842766|ref|NP_337803.1| hypothetical protein MT3276 [Mycobacterium tuberculosis CDC1551]
gi|31794362|ref|NP_856855.1| hypothetical protein Mb3210 [Mycobacterium bovis AF2122/97]
80 more sequence titles
Length=115
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/109 (29%), Positives = 58/109 (54%), Gaps = 2/109 (1%)
Query 5 VLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALA 64
V AS + A++ G+T +V ++ S R+V W G + P+R + RL +L + L+
Sbjct 9 VEASEIVDALKPFGVTQVDVAAVIQVSDRAVRGWRTGDIRPERYD--RLAQLRDLVLLLS 66
Query 65 EVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV 113
+ L W+ + NRLL+ ++P DL+ Y+ V + ++ +G +V
Sbjct 67 DSLTPRGVGQWLHAKNRLLDGQRPVDLLAKDRYEDVRSAAESFIDGAYV 115
>gi|339783433|gb|AEK09148.1| gp52 [Mycobacterium phage Ibhubesi]
Length=61
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/58 (42%), Positives = 35/58 (61%), Gaps = 0/58 (0%)
Query 55 ELAYVADALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVF 112
+L+ V +A E+ + ++WM +PNR L + P LV G+ RVLA ID +AEG F
Sbjct 3 DLSRVREAALEIYTAEGVSIWMEAPNRFLGMKSPRALVESGDADRVLAYIDFLAEGNF 60
>gi|296124199|ref|YP_003631977.1| hypothetical protein Plim_3967 [Planctomyces limnophilus DSM
3776]
gi|296016539|gb|ADG69778.1| hypothetical protein Plim_3967 [Planctomyces limnophilus DSM
3776]
Length=137
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/97 (29%), Positives = 50/97 (52%), Gaps = 1/97 (1%)
Query 15 ERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQANV 74
RL L + ++ S RS+A G P ++L+E+ + +ALAEV+ +D
Sbjct 40 HRLQLKQADFARLLPVSVRSLATLEGG-APPSEAVARKLVEIHRLTNALAEVIKKDSLGW 98
Query 75 WMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGV 111
W+ +PN + KP +++ GE R+ ++I + GV
Sbjct 99 WLQTPNGAFDGLKPIEVIDRGESDRIWSMIFFLRSGV 135
>gi|50955725|ref|YP_063013.1| hypothetical protein Lxx22360 [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50952207|gb|AAT89908.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length=125
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (35%), Positives = 44/85 (52%), Gaps = 2/85 (2%)
Query 19 LTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAY-VADALAEVLPRDQANVWMF 77
L + V I +PR V+RW +G P L +QRL+ + V + LAEV P + W
Sbjct 33 LGRDVVAIITGKTPRQVSRWISGDATPP-LGEQRLLRDTFQVVELLAEVDPDEVVRAWFI 91
Query 78 SPNRLLEHRKPADLVRDGEYQRVLA 102
N LE PA+++ +G + V+A
Sbjct 92 GMNPQLEDAAPAEVIAEGRVRDVMA 116
>gi|145223460|ref|YP_001134138.1| hypothetical protein Mflv_2873 [Mycobacterium gilvum PYR-GCK]
gi|145215946|gb|ABP45350.1| hypothetical protein Mflv_2873 [Mycobacterium gilvum PYR-GCK]
Length=153
Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/88 (29%), Positives = 40/88 (46%), Gaps = 0/88 (0%)
Query 19 LTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQANVWMFS 78
+ ++ ++ SP +RW +G+ P LI+L +V V D A +WM S
Sbjct 59 FSRAQLAKLIGVSPSQTSRWASGEERPGPAAAPALIDLEHVYSRARLVWGGDSARIWMES 118
Query 79 PNRLLEHRKPADLVRDGEYQRVLALIDA 106
N L +P D++ RVL +DA
Sbjct 119 ANAFLGGARPLDVLVTEGAARVLQTLDA 146
>gi|255533199|ref|YP_003093571.1| hypothetical protein Phep_3315 [Pedobacter heparinus DSM 2366]
gi|255346183|gb|ACU05509.1| conserved hypothetical protein [Pedobacter heparinus DSM 2366]
Length=161
Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query 15 ERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPR-DQAN 73
+++ LT +EV I+ S R++ R+T ++ + ++ IELA + EV D N
Sbjct 62 KQISLTIQEVAGIMHISERTLQRYTPATLIKTE-HAEKAIELARLYQRGTEVFGTIDNFN 120
Query 74 VWMFSPNRLLEHRKPADLVRDG-EYQRVLALIDAMAEGVF 112
WM +PN L P +L+ ++ +L + + GVF
Sbjct 121 DWMKTPNYTLNGEAPLNLLDTSIGFELILQTLGRIEYGVF 160
>gi|258646905|ref|ZP_05734374.1| toxin-antitoxin system, antitoxin component, Xre family [Dialister
invisus DSM 15470]
gi|260404347|gb|EEW97894.1| toxin-antitoxin system, antitoxin component, Xre family [Dialister
invisus DSM 15470]
Length=262
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/42 (43%), Positives = 29/42 (70%), Gaps = 3/42 (7%)
Query 16 RLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELA 57
+LGL+ EE G I +A+ SV+ W +G+V+P N +RL ++A
Sbjct 22 KLGLSMEEFGKIFNATKGSVSGWESGKVIP---NIERLHQMA 60
>gi|340752025|ref|ZP_08688835.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817]
gi|340562171|gb|EEO36039.2| transcriptional regulator [Fusobacterium mortiferum ATCC 9817]
Length=163
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/57 (27%), Positives = 36/57 (64%), Gaps = 3/57 (5%)
Query 15 ERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQ 71
++ G+T EE+G+ ++ S +++ +W + Q P+ +++I+L+Y D + L +D+
Sbjct 12 KKKGMTQEELGEELNVSRQTITKWESNQSFPEI---KKIIKLSYFFDVTIDYLLKDE 65
>gi|225378570|ref|ZP_03755791.1| hypothetical protein ROSEINA2194_04238 [Roseburia inulinivorans
DSM 16841]
gi|225209584|gb|EEG91938.1| hypothetical protein ROSEINA2194_04238 [Roseburia inulinivorans
DSM 16841]
Length=150
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/80 (28%), Positives = 47/80 (59%), Gaps = 11/80 (13%)
Query 19 LTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPR----DQANV 74
LT E++ + ++ S +S+++W +GQV+P+ ++++EL+ V D + L + D+ +V
Sbjct 16 LTQEQLAEQLNVSRQSISKWESGQVIPEV---EKIVELSKVFDVTVDYLLKPSEIDELSV 72
Query 75 WMFSPNRLLEHRKPADLVRD 94
+LE ++ LVR+
Sbjct 73 ----KTEILEQQQKQMLVRE 88
>gi|291619582|ref|YP_003522324.1| hypothetical Protein PANA_4029 [Pantoea ananatis LMG 20103]
gi|291154612|gb|ADD79196.1| Hypothetical Protein PANA_4029 [Pantoea ananatis LMG 20103]
Length=151
Score = 38.1 bits (87), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/81 (35%), Positives = 42/81 (52%), Gaps = 12/81 (14%)
Query 36 ARWTAGQVVPQRLNKQRLIELAYVADALAEVLP--RDQANVWMFSPNRLLEHRKPADLV- 92
+R+TA Q +RL+ V D E+ +++A W+ P R L ++KPADLV
Sbjct 78 SRFTAEQ-------SERLVRFIRVMDRAVELFEGDKEKARQWLNEPARALGNKKPADLVA 130
Query 93 -RDGEYQRVLALIDAMAEGVF 112
G Y+ VL LI + GV+
Sbjct 131 SETGAYE-VLKLITRLEHGVY 150
>gi|327396702|dbj|BAK14123.1| hypothetical protein PAJ_p0256 [Pantoea ananatis AJ13355]
Length=147
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/81 (35%), Positives = 42/81 (52%), Gaps = 12/81 (14%)
Query 36 ARWTAGQVVPQRLNKQRLIELAYVADALAEVLP--RDQANVWMFSPNRLLEHRKPADLV- 92
+R+TA Q +RL+ V D E+ +++A W+ P R L ++KPADLV
Sbjct 74 SRFTAEQ-------SERLVRFIRVMDRAVELFEGDKEKARQWLNEPARALGNKKPADLVA 126
Query 93 -RDGEYQRVLALIDAMAEGVF 112
G Y+ VL LI + GV+
Sbjct 127 SETGAYE-VLKLITRLEHGVY 146
>gi|114319748|ref|YP_741431.1| XRE family transcriptional regulator [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226142|gb|ABI55941.1| transcriptional regulator, XRE family [Alkalilimnicola ehrlichii
MLHE-1]
Length=1381
Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/79 (32%), Positives = 40/79 (51%), Gaps = 2/79 (2%)
Query 2 GVNVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVAD 61
G +V A + GA+++L LT E + D + S +V+ W + VP QRL A +A
Sbjct 403 GRDVFAKALKGAMQQLQLTGEALADALGVSKAAVSGWINARTVPAPATYQRLC--ATLAS 460
Query 62 ALAEVLPRDQANVWMFSPN 80
+ + D A++ SPN
Sbjct 461 SGQALPGTDYADIGKNSPN 479
>gi|217975711|ref|YP_002360310.1| putative phage repressor [Shewanella baltica OS223]
gi|217501061|gb|ACK48948.1| putative phage repressor [Shewanella baltica OS223]
Length=231
Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/58 (28%), Positives = 34/58 (59%), Gaps = 0/58 (0%)
Query 17 LGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQANV 74
LG + EE G + + ++++W AG+ +R +++IE + D +++ R++ANV
Sbjct 34 LGFSQEEFGRRIGVTKSTISQWEAGKSQARRKFIKKIIETFELEDNYFDIVDREEANV 91
>gi|298717116|ref|YP_003729758.1| hypothetical protein Pvag_pPag30017 [Pantoea vagans C9-1]
gi|298361305|gb|ADI78086.1| hypothetical protein Pvag_pPag30017 [Pantoea vagans C9-1]
Length=147
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/66 (35%), Positives = 36/66 (55%), Gaps = 5/66 (7%)
Query 51 QRLIELAYVADALAEVLP--RDQANVWMFSPNRLLEHRKPADLV--RDGEYQRVLALIDA 106
+RL+ + V D E+ +D+A W+ PNR L + PA+L+ G Y+ VL LI
Sbjct 82 ERLVRIIRVIDRAVELFEGDKDEAQKWLNEPNRALSWKMPAELMASETGAYE-VLKLITR 140
Query 107 MAEGVF 112
+ GV+
Sbjct 141 LEHGVY 146
>gi|121534633|ref|ZP_01666455.1| transcriptional regulator, XRE family [Thermosinus carboxydivorans
Nor1]
gi|121306885|gb|EAX47805.1| transcriptional regulator, XRE family [Thermosinus carboxydivorans
Nor1]
Length=72
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/41 (37%), Positives = 24/41 (59%), Gaps = 0/41 (0%)
Query 17 LGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELA 57
LG+T E++ ++ S ++ RW G+ +P RL K R IE
Sbjct 16 LGITQEQLARDLNISFSTINRWENGRTIPSRLAKMRFIEYC 56
>gi|222055909|ref|YP_002538271.1| hypothetical protein Geob_2824 [Geobacter sp. FRC-32]
gi|221565198|gb|ACM21170.1| conserved hypothetical protein [Geobacter sp. FRC-32]
Length=128
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/108 (33%), Positives = 49/108 (46%), Gaps = 7/108 (6%)
Query 5 VLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQ-----RLIELAYV 59
VL+ V A ERLGL+ + ++ S SV+R AG K+ L+ L
Sbjct 17 VLSKAVINAAERLGLSQARLAHVLGLSKASVSRLFAGTYQLSSEKKEWEFAVLLLRLFRS 76
Query 60 ADALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGE-YQRVLALIDA 106
DA+ + D WM S N L RKP +L+ E RV+ +DA
Sbjct 77 LDAIVGGVATD-VRSWMNSDNLALAGRKPIELITSTEGLVRVIYYLDA 123
>gi|296132417|ref|YP_003639664.1| transcriptional regulator, XRE family [Thermincola sp. JR]
gi|296030995|gb|ADG81763.1| transcriptional regulator, XRE family [Thermincola potens JR]
Length=70
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/41 (37%), Positives = 24/41 (59%), Gaps = 0/41 (0%)
Query 17 LGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELA 57
LG+T E++ ++ S ++ RW G+ +P RL K R IE
Sbjct 14 LGITQEQLARDLNISFSTINRWENGRTIPSRLAKMRFIEYC 54
>gi|115378362|ref|ZP_01465526.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
gi|310818241|ref|YP_003950599.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
gi|115364638|gb|EAU63709.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
gi|309391313|gb|ADO68772.1| Transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
Length=168
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/85 (29%), Positives = 36/85 (43%), Gaps = 18/85 (21%)
Query 5 VLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALA 64
L + A RLGLT E++ + ++ +P R G +VP RL + L
Sbjct 8 TLGRNIRQARHRLGLTQEQMAERINMTPEVYGRMERGNLVP------RLERFVVICRVLG 61
Query 65 EVLPRDQANVWMFSPNRLLEHRKPA 89
E +PNRL+ R+PA
Sbjct 62 E------------TPNRLISSREPA 74
>gi|224542005|ref|ZP_03682544.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai
DSM 15897]
gi|224525062|gb|EEF94167.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai
DSM 15897]
Length=378
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 22/99 (23%), Positives = 45/99 (46%), Gaps = 12/99 (12%)
Query 1 MGVNVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQ-----------RLN 49
M + +S +R GLT E++G+I+ S ++++RW G +P ++
Sbjct 1 MDTKKIGKFISENRKRKGLTQEQLGNILGVSNKTISRWENGNYMPDLSLLIPLSETLDIS 60
Query 50 KQRLIELAYVA-DALAEVLPRDQANVWMFSPNRLLEHRK 87
L+ Y+ D + E + N +S N L++ ++
Sbjct 61 LNELLNGKYITEDKIMETTEKSLKNTINYSKNMLIQEKR 99
>gi|293400017|ref|ZP_06644163.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291306417|gb|EFE47660.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length=183
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/69 (35%), Positives = 38/69 (56%), Gaps = 9/69 (13%)
Query 16 RLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADAL----AEVLPRDQ 71
+LGLT E+VG V S +V RW +G++ R +K +A +A+AL A ++ D+
Sbjct 13 QLGLTMEQVGRKVGVSKATVQRWESGEICNVRRDK-----IAKLANALQTTPAYLMGWDE 67
Query 72 ANVWMFSPN 80
+ FS N
Sbjct 68 NEISYFSKN 76
>gi|257883388|ref|ZP_05663041.1| hypothetical protein EFQG_02522 [Enterococcus faecium 1,231,502]
gi|257819046|gb|EEV46374.1| hypothetical protein EFQG_02522 [Enterococcus faecium 1,231,502]
Length=148
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/59 (39%), Positives = 34/59 (58%), Gaps = 4/59 (6%)
Query 15 ERLGLTYEEVGDIVDASPRS-VARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQA 72
++LGLT +E G V SPRS V+ W G +P NK +L ++A +A+ E L D+
Sbjct 48 KKLGLTMQEFGYEVSNSPRSTVSTWEHGGNLP---NKAKLKKIADIANCSVEDLLFDEG 103
>gi|37521112|ref|NP_924489.1| hypothetical protein glr1543 [Gloeobacter violaceus PCC 7421]
gi|35212108|dbj|BAC89484.1| glr1543 [Gloeobacter violaceus PCC 7421]
Length=122
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/102 (29%), Positives = 45/102 (45%), Gaps = 18/102 (17%)
Query 19 LTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELA---------YVADALAEVLPR 69
L+ E + ++ S ++ RW G P K +L L+ Y + L E L
Sbjct 28 LSRERMSSLLQVSSKTYERWEKGVATPAEAQKWKLARLSEILALGSLVYTPEGLREFL-- 85
Query 70 DQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGV 111
Q + F N LE ++R GE++RVLA + A EG+
Sbjct 86 -QTPMPAFDGNCALE------MLRRGEFERVLAALAADYEGL 120
>gi|209808838|ref|YP_002274409.1| Cro/CI family transcriptional regulator [Enterococcus faecium]
gi|257880761|ref|ZP_05660414.1| helix-turn-helix domain-containing protein [Enterococcus faecium
1,230,933]
gi|257892131|ref|ZP_05671784.1| helix-turn-helix domain-containing protein [Enterococcus faecium
1,231,410]
7 more sequence titles
Length=260
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/59 (39%), Positives = 34/59 (58%), Gaps = 4/59 (6%)
Query 15 ERLGLTYEEVGDIVDASPRS-VARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQA 72
++LGLT +E G V SPRS V+ W G +P NK +L ++A +A+ E L D+
Sbjct 160 KKLGLTMQEFGYEVSNSPRSTVSTWEHGGNLP---NKAKLKKIADIANCSVEDLLFDEG 215
>gi|343513085|ref|ZP_08750197.1| putative ribosomal large chain pseudouridine synthase A [Vibrio
scophthalmi LMG 19158]
gi|342794053|gb|EGU29836.1| putative ribosomal large chain pseudouridine synthase A [Vibrio
scophthalmi LMG 19158]
Length=572
Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 22/60 (37%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query 54 IELAYVADALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV 113
+E + AD EV+ +D+A V + P+ LL P ++D Y RV A+ + AEG FV
Sbjct 358 LEDNWAADKALEVIYQDEAIVVVNKPSGLLS--VPGKTIKDSAYTRVQAMFNDNAEGPFV 415
>gi|162448119|ref|YP_001621251.1| membrane-anchored DNA-binding protein [Acholeplasma laidlawii
PG-8A]
gi|161986226|gb|ABX81875.1| membrane-anchored DNA-binding protein, putative [Acholeplasma
laidlawii PG-8A]
Length=231
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/38 (40%), Positives = 27/38 (72%), Gaps = 3/38 (7%)
Query 20 TYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELA 57
T EE+G+++D S +S+++W + Q P+ Q+LIEL+
Sbjct 17 TQEELGELLDVSRQSISKWESDQAFPE---TQKLIELS 51
>gi|329768028|ref|ZP_08259539.1| hypothetical protein HMPREF0428_01236 [Gemella haemolysans M341]
gi|328838513|gb|EGF88121.1| hypothetical protein HMPREF0428_01236 [Gemella haemolysans M341]
Length=361
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 16/43 (38%), Positives = 26/43 (61%), Gaps = 3/43 (6%)
Query 18 GLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVA 60
G TYE+ GD AS ++ W G+ +P NK+RL+ ++ +A
Sbjct 22 GYTYEKFGDFFGASRGNIQAWEYGKALP---NKERLVNISKIA 61
>gi|336171415|ref|YP_004578553.1| hypothetical protein Lacal_0272 [Lacinutrix sp. 5H-3-7-4]
gi|334725987|gb|AEH00125.1| Conserved hypothetical protein CHP02293 [Lacinutrix sp. 5H-3-7-4]
Length=167
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/77 (28%), Positives = 41/77 (54%), Gaps = 2/77 (2%)
Query 17 LGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPR-DQANVW 75
LG++ E + D++ S R++ R + ++ + ++++E+A V EVL D W
Sbjct 70 LGISMEHMSDLIHVSHRTIQRKSDSDLL-NVYSTEQILEIAQVVSRGIEVLGTLDNFTSW 128
Query 76 MFSPNRLLEHRKPADLV 92
+ S R+L + KP L+
Sbjct 129 LHSDIRVLNYNKPISLL 145
>gi|50121728|ref|YP_050895.1| hypothetical protein ECA2804 [Pectobacterium atrosepticum SCRI1043]
gi|49612254|emb|CAG75704.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043]
Length=147
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/85 (33%), Positives = 45/85 (53%), Gaps = 13/85 (15%)
Query 33 RSV-ARWTAGQVVPQRLNKQRLIELAYVADALAEVLP--RDQANVWMFSPNRLLEHRKPA 89
RSV AR++A Q +RL+ + V D E+ +D+A W+ PNR L + PA
Sbjct 70 RSVKARFSADQ-------SERLVRIIRVIDRTVELFEGDKDEAQKWLNEPNRALGGKVPA 122
Query 90 DLV--RDGEYQRVLALIDAMAEGVF 112
+L+ G Y+ V+ L+ + GV+
Sbjct 123 ELMVSETGAYE-VMKLLTRLEHGVY 146
>gi|343514551|ref|ZP_08751620.1| putative ribosomal large chain pseudouridine synthase A [Vibrio
sp. N418]
gi|342799628|gb|EGU35185.1| putative ribosomal large chain pseudouridine synthase A [Vibrio
sp. N418]
Length=572
Score = 35.8 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 22/60 (37%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query 54 IELAYVADALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV 113
+E + AD EV+ +D+A V + P+ LL P ++D Y RV A+ + AEG FV
Sbjct 358 LEDNWAADKALEVIYQDEAIVVVNKPSGLLS--VPGKTIKDSAYTRVQAMFNDDAEGPFV 415
>gi|294631390|ref|ZP_06709950.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces
sp. e14]
gi|292834723|gb|EFF93072.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces
sp. e14]
Length=127
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/110 (27%), Positives = 46/110 (42%), Gaps = 4/110 (3%)
Query 1 MGVNVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVA 60
+G+ +A + + + Y V I DA + V RW GQ P+ ++ RL V
Sbjct 20 LGIPEIARFLQEQFSQRTVAY--VAGIEDA--KQVGRWCRGQNNPRFDSEFRLRTAFQVF 75
Query 61 DALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEG 110
+ E R A WM N LE P + D ++ V+A + +G
Sbjct 76 RYIEECENRHVARAWMMGMNPQLEDSSPLQAIADDHFKEVMAAARSYRQG 125
>gi|190015863|ref|YP_001965072.1| hypothetical protein pRL1.2 [Streptomyces sp. 44030]
gi|190015893|ref|YP_001965102.1| hypothetical protein pRL1.32c [Streptomyces sp. 44030]
gi|84872592|gb|ABC67331.1| hypothetical protein pRL1.2 [Streptomyces sp. 44030]
gi|84872622|gb|ABC67361.1| hypothetical protein pRL1.32c [Streptomyces sp. 44030]
Length=135
Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/71 (29%), Positives = 34/71 (48%), Gaps = 0/71 (0%)
Query 32 PRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQANVWMFSPNRLLEHRKPADL 91
P++VARW+ G P+ +++L V L + W N L+ PA++
Sbjct 57 PKNVARWSRGDHSPRPDTERKLRAAFQVFQLLQQYDSEGVVRAWFIGMNPHLDDESPAEV 116
Query 92 VRDGEYQRVLA 102
+RDG + VL+
Sbjct 117 LRDGRLREVLS 127
>gi|257413954|ref|ZP_04744773.2| transcriptional regulator [Roseburia intestinalis L1-82]
gi|257201706|gb|EEU99990.1| transcriptional regulator [Roseburia intestinalis L1-82]
Length=170
Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/70 (25%), Positives = 41/70 (59%), Gaps = 2/70 (2%)
Query 4 NVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADAL 63
N+L+ + +R G++ E++ ++ + S ++V++W +G+ +P + R+ E V AL
Sbjct 26 NMLSDNIQLLRKRAGMSQEQLAELTETSRQTVSKWESGESIPDVIACDRMAEAFGV--AL 83
Query 64 AEVLPRDQAN 73
++L ++ N
Sbjct 84 EDMLHYEEKN 93
>gi|329119145|ref|ZP_08247836.1| helix-turn-helix domain protein [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464776|gb|EGF11070.1| helix-turn-helix domain protein [Neisseria bacilliformis ATCC
BAA-1200]
Length=119
Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/57 (41%), Positives = 32/57 (57%), Gaps = 8/57 (14%)
Query 18 GLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYV-----ADALAEVLPR 69
GLT E+V +I+ +V+R G ++P N RL+ELA + AD LAE PR
Sbjct 24 GLTQEQVAEILQIGNEAVSRMERGLIMP---NVVRLVELAEIFQCTAADLLAESSPR 77
>gi|293378033|ref|ZP_06624210.1| DNA-binding protein [Enterococcus faecium PC4.1]
gi|292643351|gb|EFF61484.1| DNA-binding protein [Enterococcus faecium PC4.1]
Length=265
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/65 (31%), Positives = 34/65 (53%), Gaps = 4/65 (6%)
Query 2 GVNVLASTVSGAIERLGLTYEEVGDIVDASP-RSVARWTAGQVVPQRLNKQRLIELAYVA 60
+++ + + IE GLT E GD++ +P SV W G +P NK RL+ +A +
Sbjct 4 NLSLTSERIRKIIESKGLTLERFGDLIGDTPISSVNNWLRGVSLP---NKNRLLTIANIG 60
Query 61 DALAE 65
+ A+
Sbjct 61 NTSAD 65
>gi|227552269|ref|ZP_03982318.1| transcriptional regulator [Enterococcus faecium TX1330]
gi|257870781|ref|ZP_05650434.1| helix-turn-helix domain-containing protein [Enterococcus gallinarum
EG2]
gi|257876358|ref|ZP_05656011.1| helix-turn-helix domain-containing protein [Enterococcus casseliflavus
EC20]
17 more sequence titles
Length=265
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/65 (31%), Positives = 34/65 (53%), Gaps = 4/65 (6%)
Query 2 GVNVLASTVSGAIERLGLTYEEVGDIVDASP-RSVARWTAGQVVPQRLNKQRLIELAYVA 60
+++ + + IE GLT E GD++ +P SV W G +P NK RL+ +A +
Sbjct 4 NLSLTSERIRKIIESKGLTLERFGDLIGDTPISSVNNWLRGVSLP---NKNRLLTIANIG 60
Query 61 DALAE 65
+ A+
Sbjct 61 NTSAD 65
>gi|167755003|ref|ZP_02427130.1| hypothetical protein CLORAM_00507 [Clostridium ramosum DSM 1402]
gi|167705053|gb|EDS19632.1| hypothetical protein CLORAM_00507 [Clostridium ramosum DSM 1402]
Length=221
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/32 (41%), Positives = 23/32 (72%), Gaps = 0/32 (0%)
Query 15 ERLGLTYEEVGDIVDASPRSVARWTAGQVVPQ 46
+R GLT EE+ D+++ S ++V +W +G V+P
Sbjct 11 KRKGLTQEELADLLEVSRQTVTKWESGSVLPN 42
>gi|237735272|ref|ZP_04565753.1| transcriptional regulator [Mollicutes bacterium D7]
gi|229381017|gb|EEO31108.1| transcriptional regulator [Coprobacillus sp. D7]
Length=221
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/32 (41%), Positives = 23/32 (72%), Gaps = 0/32 (0%)
Query 15 ERLGLTYEEVGDIVDASPRSVARWTAGQVVPQ 46
+R GLT EE+ D+++ S ++V +W +G V+P
Sbjct 11 KRKGLTQEELADLLEVSRQTVTKWESGSVLPN 42
>gi|302875363|ref|YP_003843996.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans
743B]
gi|307688943|ref|ZP_07631389.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans
743B]
gi|302578220|gb|ADL52232.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B]
Length=226
Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/75 (27%), Positives = 37/75 (50%), Gaps = 3/75 (4%)
Query 18 GLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQANVWMF 77
GLT EE + + S ++VA+W AGQ P + RLIE++ + + L +D F
Sbjct 15 GLTQEEFAETIGVSRQAVAKWEAGQSYP---DLDRLIEISNLYKVSIDKLVKDCKENCSF 71
Query 78 SPNRLLEHRKPADLV 92
+ + + +++
Sbjct 72 NEEKTYKDYADNEMI 86
>gi|238549613|dbj|BAH65964.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length=174
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/81 (33%), Positives = 40/81 (50%), Gaps = 8/81 (9%)
Query 39 TAGQVVPQRLN---KQRLIELAYVADALAEVLPRDQ--ANVWMFSPNRLLEHRKPADLV- 92
T + V R N +RL+ + V D ++ D+ A W+ PNR L + PADL+
Sbjct 94 TFSRSVKARFNPEQSERLVRIIRVIDRAVDLFEGDKEAAQKWLNEPNRALSWKVPADLMA 153
Query 93 -RDGEYQRVLALIDAMAEGVF 112
G Y+ V+ LI + GV+
Sbjct 154 SETGAYE-VIKLITRLEHGVY 173
>gi|317048091|ref|YP_004115739.1| hypothetical protein Pat9b_1867 [Pantoea sp. At-9b]
gi|316949708|gb|ADU69183.1| conserved hypothetical protein [Pantoea sp. At-9b]
Length=147
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/68 (34%), Positives = 35/68 (52%), Gaps = 5/68 (7%)
Query 49 NKQRLIELAYVADALAEVLP--RDQANVWMFSPNRLLEHRKPADLVRD--GEYQRVLALI 104
+RL+ V D E+ R++A W+ P R L ++KP D+V G Y+ VL LI
Sbjct 80 QSERLVRFIRVMDRAVELFEGDREKALQWLNEPARALGNQKPGDIVSSETGAYE-VLKLI 138
Query 105 DAMAEGVF 112
+ GV+
Sbjct 139 TRLEHGVY 146
>gi|168998600|ref|YP_001687868.1| hypothetical protein pK2044_00180 [Klebsiella pneumoniae NTUH-K2044]
gi|206575636|ref|YP_002235694.1| conserved hypothetical protein TIGR02293 [Klebsiella pneumoniae
342]
gi|206570480|gb|ACI12126.1| conserved hypothetical protein TIGR02293 [Klebsiella pneumoniae
342]
gi|339764856|gb|AEK01076.1| hypothetical protein KPN2242_26286 [Klebsiella pneumoniae KCTC
2242]
Length=147
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/81 (33%), Positives = 40/81 (50%), Gaps = 8/81 (9%)
Query 39 TAGQVVPQRLN---KQRLIELAYVADALAEVLPRDQ--ANVWMFSPNRLLEHRKPADLV- 92
T + V R N +RL+ + V D ++ D+ A W+ PNR L + PADL+
Sbjct 67 TFSRSVKARFNPEQSERLVRIIRVIDRAVDLFEGDKEAAQKWLNEPNRALSWKVPADLMA 126
Query 93 -RDGEYQRVLALIDAMAEGVF 112
G Y+ V+ LI + GV+
Sbjct 127 SETGAYE-VIKLITRLEHGVY 146
Lambda K H
0.320 0.135 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127560148160
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40