BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1990c

Length=113
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609127|ref|NP_216506.1|  transcriptional regulatory protein ...   227    4e-58
gi|126437110|ref|YP_001072801.1|  putative transcriptional regula...   213    5e-54
gi|119854992|ref|YP_935597.1|  putative transcriptional regulator...   209    1e-52
gi|289758103|ref|ZP_06517481.1|  conserved hypothetical protein [...   181    3e-44
gi|262118137|ref|YP_003275907.1|  hypothetical protein Gbro_4901 ...  71.2    5e-11
gi|90421959|ref|YP_530329.1|  hypothetical protein RPC_0435 [Rhod...  70.1    9e-11
gi|296444469|ref|ZP_06886434.1|  conserved hypothetical protein [...  67.0    8e-10
gi|283778089|ref|YP_003368844.1|  hypothetical protein Psta_0293 ...  59.7    1e-07
gi|83592121|ref|YP_425873.1|  hypothetical protein Rru_A0782 [Rho...  55.8    2e-06
gi|15610324|ref|NP_217704.1|  hypothetical protein Rv3188 [Mycoba...  48.5    3e-04
gi|339783433|gb|AEK09148.1|  gp52 [Mycobacterium phage Ibhubesi]      48.1    4e-04
gi|296124199|ref|YP_003631977.1|  hypothetical protein Plim_3967 ...  47.0    9e-04
gi|50955725|ref|YP_063013.1|  hypothetical protein Lxx22360 [Leif...  46.2    0.002
gi|145223460|ref|YP_001134138.1|  hypothetical protein Mflv_2873 ...  41.6    0.040
gi|255533199|ref|YP_003093571.1|  hypothetical protein Phep_3315 ...  40.8    0.061
gi|258646905|ref|ZP_05734374.1|  toxin-antitoxin system, antitoxi...  38.9    0.25 
gi|340752025|ref|ZP_08688835.1|  transcriptional regulator [Fusob...  38.5    0.29 
gi|225378570|ref|ZP_03755791.1|  hypothetical protein ROSEINA2194...  38.5    0.31 
gi|291619582|ref|YP_003522324.1|  hypothetical Protein PANA_4029 ...  38.1    0.48 
gi|327396702|dbj|BAK14123.1|  hypothetical protein PAJ_p0256 [Pan...  37.7    0.55 
gi|114319748|ref|YP_741431.1|  XRE family transcriptional regulat...  37.7    0.58 
gi|217975711|ref|YP_002360310.1|  putative phage repressor [Shewa...  37.0    0.84 
gi|298717116|ref|YP_003729758.1|  hypothetical protein Pvag_pPag3...  37.0    1.0  
gi|121534633|ref|ZP_01666455.1|  transcriptional regulator, XRE f...  36.6    1.1  
gi|222055909|ref|YP_002538271.1|  hypothetical protein Geob_2824 ...  36.6    1.1  
gi|296132417|ref|YP_003639664.1|  transcriptional regulator, XRE ...  36.6    1.3  
gi|115378362|ref|ZP_01465526.1|  transcriptional regulator [Stigm...  36.6    1.4  
gi|224542005|ref|ZP_03682544.1|  hypothetical protein CATMIT_0117...  36.2    1.5  
gi|293400017|ref|ZP_06644163.1|  toxin-antitoxin system, antitoxi...  36.2    1.5  
gi|257883388|ref|ZP_05663041.1|  hypothetical protein EFQG_02522 ...  36.2    1.6  
gi|37521112|ref|NP_924489.1|  hypothetical protein glr1543 [Gloeo...  36.2    1.7  
gi|209808838|ref|YP_002274409.1|  Cro/CI family transcriptional r...  36.2    1.8  
gi|343513085|ref|ZP_08750197.1|  putative ribosomal large chain p...  36.2    1.8  
gi|162448119|ref|YP_001621251.1|  membrane-anchored DNA-binding p...  36.2    1.8  
gi|329768028|ref|ZP_08259539.1|  hypothetical protein HMPREF0428_...  35.8    2.0  
gi|336171415|ref|YP_004578553.1|  hypothetical protein Lacal_0272...  35.8    2.3  
gi|50121728|ref|YP_050895.1|  hypothetical protein ECA2804 [Pecto...  35.8    2.3  
gi|343514551|ref|ZP_08751620.1|  putative ribosomal large chain p...  35.8    2.4  
gi|294631390|ref|ZP_06709950.1|  xre family toxin-antitoxin syste...  35.4    2.5  
gi|190015863|ref|YP_001965072.1|  hypothetical protein pRL1.2 [St...  35.4    3.0  
gi|257413954|ref|ZP_04744773.2|  transcriptional regulator [Roseb...  35.4    3.0  
gi|329119145|ref|ZP_08247836.1|  helix-turn-helix domain protein ...  35.4    3.1  
gi|293378033|ref|ZP_06624210.1|  DNA-binding protein [Enterococcu...  35.0    3.4  
gi|227552269|ref|ZP_03982318.1|  transcriptional regulator [Enter...  35.0    3.5  
gi|167755003|ref|ZP_02427130.1|  hypothetical protein CLORAM_0050...  35.0    3.5  
gi|237735272|ref|ZP_04565753.1|  transcriptional regulator [Molli...  35.0    3.6  
gi|302875363|ref|YP_003843996.1|  helix-turn-helix domain-contain...  35.0    4.1  
gi|238549613|dbj|BAH65964.1|  conserved hypothetical protein [Kle...  34.7    4.2  
gi|317048091|ref|YP_004115739.1|  hypothetical protein Pat9b_1867...  34.7    4.2  
gi|168998600|ref|YP_001687868.1|  hypothetical protein pK2044_001...  34.7    4.2  


>gi|15609127|ref|NP_216506.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Rv]
 gi|15841469|ref|NP_336506.1| hypothetical protein MT2044 [Mycobacterium tuberculosis CDC1551]
 gi|31793169|ref|NP_855662.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
 78 more sequence titles
 Length=113

 Score =  227 bits (579),  Expect = 4e-58, Method: Compositional matrix adjust.
 Identities = 113/113 (100%), Positives = 113/113 (100%), Gaps = 0/113 (0%)

Query  1    MGVNVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVA  60
            MGVNVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVA
Sbjct  1    MGVNVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVA  60

Query  61   DALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV  113
            DALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV
Sbjct  61   DALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV  113


>gi|126437110|ref|YP_001072801.1| putative transcriptional regulatory protein [Mycobacterium sp. 
JLS]
 gi|126437139|ref|YP_001072830.1| putative transcriptional regulatory protein [Mycobacterium sp. 
JLS]
 gi|126236910|gb|ABO00311.1| putative transcriptional regulatory protein [Mycobacterium sp. 
JLS]
 gi|126236939|gb|ABO00340.1| putative transcriptional regulatory protein [Mycobacterium sp. 
JLS]
Length=113

 Score =  213 bits (543),  Expect = 5e-54, Method: Compositional matrix adjust.
 Identities = 105/113 (93%), Positives = 107/113 (95%), Gaps = 0/113 (0%)

Query  1    MGVNVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVA  60
            MG N LASTVS AIERLGLTYEEVGDIVDAS RSVARWT+GQVVPQRLNKQRLIELAYVA
Sbjct  1    MGANALASTVSSAIERLGLTYEEVGDIVDASARSVARWTSGQVVPQRLNKQRLIELAYVA  60

Query  61   DALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV  113
            DALAEVLPRDQANVWMFSPNRLL H KPADLVRDGEYQRVLALIDAMAEG+FV
Sbjct  61   DALAEVLPRDQANVWMFSPNRLLAHAKPADLVRDGEYQRVLALIDAMAEGIFV  113


>gi|119854992|ref|YP_935597.1| putative transcriptional regulatory protein [Mycobacterium sp. 
KMS]
 gi|145226006|ref|YP_001136660.1| putative transcriptional regulatory protein [Mycobacterium gilvum 
PYR-GCK]
 gi|119697710|gb|ABL94782.1| putative transcriptional regulatory protein [Mycobacterium sp. 
KMS]
 gi|145218469|gb|ABP47872.1| putative transcriptional regulatory protein [Mycobacterium gilvum 
PYR-GCK]
Length=113

 Score =  209 bits (532),  Expect = 1e-52, Method: Compositional matrix adjust.
 Identities = 103/113 (92%), Positives = 106/113 (94%), Gaps = 0/113 (0%)

Query  1    MGVNVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVA  60
            MG N LASTVS AIERLGLTYEEVG IVDAS RSVARWT+GQVVPQRLNKQRLIELAYVA
Sbjct  1    MGANALASTVSSAIERLGLTYEEVGGIVDASARSVARWTSGQVVPQRLNKQRLIELAYVA  60

Query  61   DALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV  113
            DAL+EVLPRDQANVWMFSPNRLL H KPADLVRDGEYQRVLALIDAMAEG+FV
Sbjct  61   DALSEVLPRDQANVWMFSPNRLLAHGKPADLVRDGEYQRVLALIDAMAEGIFV  113


>gi|289758103|ref|ZP_06517481.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289713667|gb|EFD77679.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=109

 Score =  181 bits (460),  Expect = 3e-44, Method: Compositional matrix adjust.
 Identities = 94/104 (91%), Positives = 94/104 (91%), Gaps = 1/104 (0%)

Query  10   VSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPR  69
              GAIERLGLTYEEVGDIVDA     A   AGQVVPQRLNKQRLIELAYVADALAEVLPR
Sbjct  7    CRGAIERLGLTYEEVGDIVDARAFRGA-MNAGQVVPQRLNKQRLIELAYVADALAEVLPR  65

Query  70   DQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV  113
            DQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV
Sbjct  66   DQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV  109


>gi|262118137|ref|YP_003275907.1| hypothetical protein Gbro_4901 [Gordonia bronchialis DSM 43247]
 gi|262088047|gb|ACY24014.1| hypothetical protein Gbro_4901 [Gordonia bronchialis DSM 43247]
Length=107

 Score = 71.2 bits (173),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 33/95 (35%), Positives = 55/95 (58%), Gaps = 0/95 (0%)

Query  16   RLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQANVW  75
            R GLT  E+G +   S RSV  W +G+  P+   + RL+EL Y+ + L+EV   +   +W
Sbjct  10   RRGLTVGEIGGVTHVSERSVHNWASGKSRPEGEQRDRLLELKYIVEGLSEVYEDEGIEIW  69

Query  76   MFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEG  110
            + +  R L  + P +L+R+G++  VL  +D +A G
Sbjct  70   LHARQRSLGGKSPLELLRNGQFDDVLEAVDRLAGG  104


>gi|90421959|ref|YP_530329.1| hypothetical protein RPC_0435 [Rhodopseudomonas palustris BisB18]
 gi|90103973|gb|ABD86010.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length=112

 Score = 70.1 bits (170),  Expect = 9e-11, Method: Compositional matrix adjust.
 Identities = 31/96 (33%), Positives = 56/96 (59%), Gaps = 0/96 (0%)

Query  18   GLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQANVWMF  77
            GL  +++ +IV  SP +V+RW++G+  P    +  + EL YV D LAE    D+  +W+ 
Sbjct  17   GLQGKDIANIVAVSPATVSRWSSGKATPDLKTQTIIAELRYVVDRLAEFYTADETRLWLH  76

Query  78   SPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV  113
            +P+ +L+  K  DL+  G+ + VL +I+ +  G + 
Sbjct  77   TPHPMLDGEKAIDLINAGKTELVLGIIENLDSGAYT  112


>gi|296444469|ref|ZP_06886434.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
 gi|296258116|gb|EFH05178.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
Length=112

 Score = 67.0 bits (162),  Expect = 8e-10, Method: Compositional matrix adjust.
 Identities = 34/111 (31%), Positives = 63/111 (57%), Gaps = 4/111 (3%)

Query  6    LASTVSGAIERL----GLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVAD  61
            +A+ VS  ++ L    GL  +++ +IV  SP +V+RW+ G+  P    +  + EL YV D
Sbjct  1    MATAVSRILDHLRSDGGLQGKDIANIVAVSPATVSRWSNGKATPDLRTQTVIAELRYVVD  60

Query  62   ALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVF  112
             L++    D+  +W+ + + +L   +  DL+  G  + VLA+I+A+A G +
Sbjct  61   RLSDFYTPDETRLWLHAKHPMLNGERAIDLINSGRTEAVLAVIEALASGAY  111


>gi|283778089|ref|YP_003368844.1| hypothetical protein Psta_0293 [Pirellula staleyi DSM 6068]
 gi|283436542|gb|ADB14984.1| hypothetical protein Psta_0293 [Pirellula staleyi DSM 6068]
Length=125

 Score = 59.7 bits (143),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 33/98 (34%), Positives = 56/98 (58%), Gaps = 1/98 (1%)

Query  7    ASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEV  66
            A++V+     LGLT +    +   S R++A W AG+      ++QRL+E+  +  +L EV
Sbjct  22   AASVADLRASLGLTRKLFSRLTGYSERAIAEWEAGKEQSDS-SRQRLMEIHRLRQSLVEV  80

Query  67   LPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALI  104
            +P +Q  VW+ +PN  L+  KP +++  GE  R+  LI
Sbjct  81   IPAEQIGVWLLAPNNALDGFKPLEVIERGEIDRIWRLI  118


>gi|83592121|ref|YP_425873.1| hypothetical protein Rru_A0782 [Rhodospirillum rubrum ATCC 11170]
 gi|83575035|gb|ABC21586.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
Length=112

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 28/99 (29%), Positives = 53/99 (54%), Gaps = 0/99 (0%)

Query  15   ERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQANV  74
             R GL   ++ +IVD S  +V+RW+ G+  P    +  + +L YV + L++    D+  +
Sbjct  14   SRGGLQGRDIANIVDVSTATVSRWSHGKGSPTIRTQTVIADLRYVVERLSDFYTADETRL  73

Query  75   WMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV  113
            W+ S + LL   +  DL+     + VLA+I+ +  G ++
Sbjct  74   WLHSHHPLLNGERAIDLINGDRTEDVLAVIERLDAGSYI  112


>gi|15610324|ref|NP_217704.1| hypothetical protein Rv3188 [Mycobacterium tuberculosis H37Rv]
 gi|15842766|ref|NP_337803.1| hypothetical protein MT3276 [Mycobacterium tuberculosis CDC1551]
 gi|31794362|ref|NP_856855.1| hypothetical protein Mb3210 [Mycobacterium bovis AF2122/97]
 80 more sequence titles
 Length=115

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 31/109 (29%), Positives = 58/109 (54%), Gaps = 2/109 (1%)

Query  5    VLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALA  64
            V AS +  A++  G+T  +V  ++  S R+V  W  G + P+R +  RL +L  +   L+
Sbjct  9    VEASEIVDALKPFGVTQVDVAAVIQVSDRAVRGWRTGDIRPERYD--RLAQLRDLVLLLS  66

Query  65   EVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV  113
            + L       W+ + NRLL+ ++P DL+    Y+ V +  ++  +G +V
Sbjct  67   DSLTPRGVGQWLHAKNRLLDGQRPVDLLAKDRYEDVRSAAESFIDGAYV  115


>gi|339783433|gb|AEK09148.1| gp52 [Mycobacterium phage Ibhubesi]
Length=61

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 35/58 (61%), Gaps = 0/58 (0%)

Query  55   ELAYVADALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVF  112
            +L+ V +A  E+   +  ++WM +PNR L  + P  LV  G+  RVLA ID +AEG F
Sbjct  3    DLSRVREAALEIYTAEGVSIWMEAPNRFLGMKSPRALVESGDADRVLAYIDFLAEGNF  60


>gi|296124199|ref|YP_003631977.1| hypothetical protein Plim_3967 [Planctomyces limnophilus DSM 
3776]
 gi|296016539|gb|ADG69778.1| hypothetical protein Plim_3967 [Planctomyces limnophilus DSM 
3776]
Length=137

 Score = 47.0 bits (110),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 28/97 (29%), Positives = 50/97 (52%), Gaps = 1/97 (1%)

Query  15   ERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQANV  74
             RL L   +   ++  S RS+A    G   P     ++L+E+  + +ALAEV+ +D    
Sbjct  40   HRLQLKQADFARLLPVSVRSLATLEGG-APPSEAVARKLVEIHRLTNALAEVIKKDSLGW  98

Query  75   WMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGV  111
            W+ +PN   +  KP +++  GE  R+ ++I  +  GV
Sbjct  99   WLQTPNGAFDGLKPIEVIDRGESDRIWSMIFFLRSGV  135


>gi|50955725|ref|YP_063013.1| hypothetical protein Lxx22360 [Leifsonia xyli subsp. xyli str. 
CTCB07]
 gi|50952207|gb|AAT89908.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. 
CTCB07]
Length=125

 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 29/85 (35%), Positives = 44/85 (52%), Gaps = 2/85 (2%)

Query  19   LTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAY-VADALAEVLPRDQANVWMF  77
            L  + V  I   +PR V+RW +G   P  L +QRL+   + V + LAEV P +    W  
Sbjct  33   LGRDVVAIITGKTPRQVSRWISGDATPP-LGEQRLLRDTFQVVELLAEVDPDEVVRAWFI  91

Query  78   SPNRLLEHRKPADLVRDGEYQRVLA  102
              N  LE   PA+++ +G  + V+A
Sbjct  92   GMNPQLEDAAPAEVIAEGRVRDVMA  116


>gi|145223460|ref|YP_001134138.1| hypothetical protein Mflv_2873 [Mycobacterium gilvum PYR-GCK]
 gi|145215946|gb|ABP45350.1| hypothetical protein Mflv_2873 [Mycobacterium gilvum PYR-GCK]
Length=153

 Score = 41.6 bits (96),  Expect = 0.040, Method: Compositional matrix adjust.
 Identities = 25/88 (29%), Positives = 40/88 (46%), Gaps = 0/88 (0%)

Query  19   LTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQANVWMFS  78
             +  ++  ++  SP   +RW +G+  P       LI+L +V      V   D A +WM S
Sbjct  59   FSRAQLAKLIGVSPSQTSRWASGEERPGPAAAPALIDLEHVYSRARLVWGGDSARIWMES  118

Query  79   PNRLLEHRKPADLVRDGEYQRVLALIDA  106
             N  L   +P D++      RVL  +DA
Sbjct  119  ANAFLGGARPLDVLVTEGAARVLQTLDA  146


>gi|255533199|ref|YP_003093571.1| hypothetical protein Phep_3315 [Pedobacter heparinus DSM 2366]
 gi|255346183|gb|ACU05509.1| conserved hypothetical protein [Pedobacter heparinus DSM 2366]
Length=161

 Score = 40.8 bits (94),  Expect = 0.061, Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query  15   ERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPR-DQAN  73
            +++ LT +EV  I+  S R++ R+T   ++    + ++ IELA +     EV    D  N
Sbjct  62   KQISLTIQEVAGIMHISERTLQRYTPATLIKTE-HAEKAIELARLYQRGTEVFGTIDNFN  120

Query  74   VWMFSPNRLLEHRKPADLVRDG-EYQRVLALIDAMAEGVF  112
             WM +PN  L    P +L+     ++ +L  +  +  GVF
Sbjct  121  DWMKTPNYTLNGEAPLNLLDTSIGFELILQTLGRIEYGVF  160


>gi|258646905|ref|ZP_05734374.1| toxin-antitoxin system, antitoxin component, Xre family [Dialister 
invisus DSM 15470]
 gi|260404347|gb|EEW97894.1| toxin-antitoxin system, antitoxin component, Xre family [Dialister 
invisus DSM 15470]
Length=262

 Score = 38.9 bits (89),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 18/42 (43%), Positives = 29/42 (70%), Gaps = 3/42 (7%)

Query  16  RLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELA  57
           +LGL+ EE G I +A+  SV+ W +G+V+P   N +RL ++A
Sbjct  22  KLGLSMEEFGKIFNATKGSVSGWESGKVIP---NIERLHQMA  60


>gi|340752025|ref|ZP_08688835.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817]
 gi|340562171|gb|EEO36039.2| transcriptional regulator [Fusobacterium mortiferum ATCC 9817]
Length=163

 Score = 38.5 bits (88),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 15/57 (27%), Positives = 36/57 (64%), Gaps = 3/57 (5%)

Query  15  ERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQ  71
           ++ G+T EE+G+ ++ S +++ +W + Q  P+    +++I+L+Y  D   + L +D+
Sbjct  12  KKKGMTQEELGEELNVSRQTITKWESNQSFPEI---KKIIKLSYFFDVTIDYLLKDE  65


>gi|225378570|ref|ZP_03755791.1| hypothetical protein ROSEINA2194_04238 [Roseburia inulinivorans 
DSM 16841]
 gi|225209584|gb|EEG91938.1| hypothetical protein ROSEINA2194_04238 [Roseburia inulinivorans 
DSM 16841]
Length=150

 Score = 38.5 bits (88),  Expect = 0.31, Method: Compositional matrix adjust.
 Identities = 22/80 (28%), Positives = 47/80 (59%), Gaps = 11/80 (13%)

Query  19  LTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPR----DQANV  74
           LT E++ + ++ S +S+++W +GQV+P+    ++++EL+ V D   + L +    D+ +V
Sbjct  16  LTQEQLAEQLNVSRQSISKWESGQVIPEV---EKIVELSKVFDVTVDYLLKPSEIDELSV  72

Query  75  WMFSPNRLLEHRKPADLVRD  94
                  +LE ++   LVR+
Sbjct  73  ----KTEILEQQQKQMLVRE  88


>gi|291619582|ref|YP_003522324.1| hypothetical Protein PANA_4029 [Pantoea ananatis LMG 20103]
 gi|291154612|gb|ADD79196.1| Hypothetical Protein PANA_4029 [Pantoea ananatis LMG 20103]
Length=151

 Score = 38.1 bits (87),  Expect = 0.48, Method: Compositional matrix adjust.
 Identities = 28/81 (35%), Positives = 42/81 (52%), Gaps = 12/81 (14%)

Query  36   ARWTAGQVVPQRLNKQRLIELAYVADALAEVLP--RDQANVWMFSPNRLLEHRKPADLV-  92
            +R+TA Q        +RL+    V D   E+    +++A  W+  P R L ++KPADLV 
Sbjct  78   SRFTAEQ-------SERLVRFIRVMDRAVELFEGDKEKARQWLNEPARALGNKKPADLVA  130

Query  93   -RDGEYQRVLALIDAMAEGVF  112
               G Y+ VL LI  +  GV+
Sbjct  131  SETGAYE-VLKLITRLEHGVY  150


>gi|327396702|dbj|BAK14123.1| hypothetical protein PAJ_p0256 [Pantoea ananatis AJ13355]
Length=147

 Score = 37.7 bits (86),  Expect = 0.55, Method: Compositional matrix adjust.
 Identities = 28/81 (35%), Positives = 42/81 (52%), Gaps = 12/81 (14%)

Query  36   ARWTAGQVVPQRLNKQRLIELAYVADALAEVLP--RDQANVWMFSPNRLLEHRKPADLV-  92
            +R+TA Q        +RL+    V D   E+    +++A  W+  P R L ++KPADLV 
Sbjct  74   SRFTAEQ-------SERLVRFIRVMDRAVELFEGDKEKARQWLNEPARALGNKKPADLVA  126

Query  93   -RDGEYQRVLALIDAMAEGVF  112
               G Y+ VL LI  +  GV+
Sbjct  127  SETGAYE-VLKLITRLEHGVY  146


>gi|114319748|ref|YP_741431.1| XRE family transcriptional regulator [Alkalilimnicola ehrlichii 
MLHE-1]
 gi|114226142|gb|ABI55941.1| transcriptional regulator, XRE family [Alkalilimnicola ehrlichii 
MLHE-1]
Length=1381

 Score = 37.7 bits (86),  Expect = 0.58, Method: Compositional matrix adjust.
 Identities = 25/79 (32%), Positives = 40/79 (51%), Gaps = 2/79 (2%)

Query  2    GVNVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVAD  61
            G +V A  + GA+++L LT E + D +  S  +V+ W   + VP     QRL   A +A 
Sbjct  403  GRDVFAKALKGAMQQLQLTGEALADALGVSKAAVSGWINARTVPAPATYQRLC--ATLAS  460

Query  62   ALAEVLPRDQANVWMFSPN  80
            +   +   D A++   SPN
Sbjct  461  SGQALPGTDYADIGKNSPN  479


>gi|217975711|ref|YP_002360310.1| putative phage repressor [Shewanella baltica OS223]
 gi|217501061|gb|ACK48948.1| putative phage repressor [Shewanella baltica OS223]
Length=231

 Score = 37.0 bits (84),  Expect = 0.84, Method: Compositional matrix adjust.
 Identities = 16/58 (28%), Positives = 34/58 (59%), Gaps = 0/58 (0%)

Query  17  LGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQANV  74
           LG + EE G  +  +  ++++W AG+   +R   +++IE   + D   +++ R++ANV
Sbjct  34  LGFSQEEFGRRIGVTKSTISQWEAGKSQARRKFIKKIIETFELEDNYFDIVDREEANV  91


>gi|298717116|ref|YP_003729758.1| hypothetical protein Pvag_pPag30017 [Pantoea vagans C9-1]
 gi|298361305|gb|ADI78086.1| hypothetical protein Pvag_pPag30017 [Pantoea vagans C9-1]
Length=147

 Score = 37.0 bits (84),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 23/66 (35%), Positives = 36/66 (55%), Gaps = 5/66 (7%)

Query  51   QRLIELAYVADALAEVLP--RDQANVWMFSPNRLLEHRKPADLV--RDGEYQRVLALIDA  106
            +RL+ +  V D   E+    +D+A  W+  PNR L  + PA+L+    G Y+ VL LI  
Sbjct  82   ERLVRIIRVIDRAVELFEGDKDEAQKWLNEPNRALSWKMPAELMASETGAYE-VLKLITR  140

Query  107  MAEGVF  112
            +  GV+
Sbjct  141  LEHGVY  146


>gi|121534633|ref|ZP_01666455.1| transcriptional regulator, XRE family [Thermosinus carboxydivorans 
Nor1]
 gi|121306885|gb|EAX47805.1| transcriptional regulator, XRE family [Thermosinus carboxydivorans 
Nor1]
Length=72

 Score = 36.6 bits (83),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 15/41 (37%), Positives = 24/41 (59%), Gaps = 0/41 (0%)

Query  17  LGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELA  57
           LG+T E++   ++ S  ++ RW  G+ +P RL K R IE  
Sbjct  16  LGITQEQLARDLNISFSTINRWENGRTIPSRLAKMRFIEYC  56


>gi|222055909|ref|YP_002538271.1| hypothetical protein Geob_2824 [Geobacter sp. FRC-32]
 gi|221565198|gb|ACM21170.1| conserved hypothetical protein [Geobacter sp. FRC-32]
Length=128

 Score = 36.6 bits (83),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 35/108 (33%), Positives = 49/108 (46%), Gaps = 7/108 (6%)

Query  5    VLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQ-----RLIELAYV  59
            VL+  V  A ERLGL+   +  ++  S  SV+R  AG        K+      L+ L   
Sbjct  17   VLSKAVINAAERLGLSQARLAHVLGLSKASVSRLFAGTYQLSSEKKEWEFAVLLLRLFRS  76

Query  60   ADALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGE-YQRVLALIDA  106
             DA+   +  D    WM S N  L  RKP +L+   E   RV+  +DA
Sbjct  77   LDAIVGGVATD-VRSWMNSDNLALAGRKPIELITSTEGLVRVIYYLDA  123


>gi|296132417|ref|YP_003639664.1| transcriptional regulator, XRE family [Thermincola sp. JR]
 gi|296030995|gb|ADG81763.1| transcriptional regulator, XRE family [Thermincola potens JR]
Length=70

 Score = 36.6 bits (83),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 15/41 (37%), Positives = 24/41 (59%), Gaps = 0/41 (0%)

Query  17  LGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELA  57
           LG+T E++   ++ S  ++ RW  G+ +P RL K R IE  
Sbjct  14  LGITQEQLARDLNISFSTINRWENGRTIPSRLAKMRFIEYC  54


>gi|115378362|ref|ZP_01465526.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
 gi|310818241|ref|YP_003950599.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115364638|gb|EAU63709.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309391313|gb|ADO68772.1| Transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
Length=168

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 24/85 (29%), Positives = 36/85 (43%), Gaps = 18/85 (21%)

Query  5   VLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALA  64
            L   +  A  RLGLT E++ + ++ +P    R   G +VP      RL     +   L 
Sbjct  8   TLGRNIRQARHRLGLTQEQMAERINMTPEVYGRMERGNLVP------RLERFVVICRVLG  61

Query  65  EVLPRDQANVWMFSPNRLLEHRKPA  89
           E            +PNRL+  R+PA
Sbjct  62  E------------TPNRLISSREPA  74


>gi|224542005|ref|ZP_03682544.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai 
DSM 15897]
 gi|224525062|gb|EEF94167.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai 
DSM 15897]
Length=378

 Score = 36.2 bits (82),  Expect = 1.5, Method: Composition-based stats.
 Identities = 22/99 (23%), Positives = 45/99 (46%), Gaps = 12/99 (12%)

Query  1   MGVNVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQ-----------RLN  49
           M    +   +S   +R GLT E++G+I+  S ++++RW  G  +P             ++
Sbjct  1   MDTKKIGKFISENRKRKGLTQEQLGNILGVSNKTISRWENGNYMPDLSLLIPLSETLDIS  60

Query  50  KQRLIELAYVA-DALAEVLPRDQANVWMFSPNRLLEHRK  87
              L+   Y+  D + E   +   N   +S N L++ ++
Sbjct  61  LNELLNGKYITEDKIMETTEKSLKNTINYSKNMLIQEKR  99


>gi|293400017|ref|ZP_06644163.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae 
bacterium 5_2_54FAA]
 gi|291306417|gb|EFE47660.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae 
bacterium 5_2_54FAA]
Length=183

 Score = 36.2 bits (82),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 24/69 (35%), Positives = 38/69 (56%), Gaps = 9/69 (13%)

Query  16  RLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADAL----AEVLPRDQ  71
           +LGLT E+VG  V  S  +V RW +G++   R +K     +A +A+AL    A ++  D+
Sbjct  13  QLGLTMEQVGRKVGVSKATVQRWESGEICNVRRDK-----IAKLANALQTTPAYLMGWDE  67

Query  72  ANVWMFSPN  80
             +  FS N
Sbjct  68  NEISYFSKN  76


>gi|257883388|ref|ZP_05663041.1| hypothetical protein EFQG_02522 [Enterococcus faecium 1,231,502]
 gi|257819046|gb|EEV46374.1| hypothetical protein EFQG_02522 [Enterococcus faecium 1,231,502]
Length=148

 Score = 36.2 bits (82),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 34/59 (58%), Gaps = 4/59 (6%)

Query  15   ERLGLTYEEVGDIVDASPRS-VARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQA  72
            ++LGLT +E G  V  SPRS V+ W  G  +P   NK +L ++A +A+   E L  D+ 
Sbjct  48   KKLGLTMQEFGYEVSNSPRSTVSTWEHGGNLP---NKAKLKKIADIANCSVEDLLFDEG  103


>gi|37521112|ref|NP_924489.1| hypothetical protein glr1543 [Gloeobacter violaceus PCC 7421]
 gi|35212108|dbj|BAC89484.1| glr1543 [Gloeobacter violaceus PCC 7421]
Length=122

 Score = 36.2 bits (82),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 29/102 (29%), Positives = 45/102 (45%), Gaps = 18/102 (17%)

Query  19   LTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELA---------YVADALAEVLPR  69
            L+ E +  ++  S ++  RW  G   P    K +L  L+         Y  + L E L  
Sbjct  28   LSRERMSSLLQVSSKTYERWEKGVATPAEAQKWKLARLSEILALGSLVYTPEGLREFL--  85

Query  70   DQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGV  111
             Q  +  F  N  LE      ++R GE++RVLA + A  EG+
Sbjct  86   -QTPMPAFDGNCALE------MLRRGEFERVLAALAADYEGL  120


>gi|209808838|ref|YP_002274409.1| Cro/CI family transcriptional regulator [Enterococcus faecium]
 gi|257880761|ref|ZP_05660414.1| helix-turn-helix domain-containing protein [Enterococcus faecium 
1,230,933]
 gi|257892131|ref|ZP_05671784.1| helix-turn-helix domain-containing protein [Enterococcus faecium 
1,231,410]
 7 more sequence titles
 Length=260

 Score = 36.2 bits (82),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 34/59 (58%), Gaps = 4/59 (6%)

Query  15   ERLGLTYEEVGDIVDASPRS-VARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQA  72
            ++LGLT +E G  V  SPRS V+ W  G  +P   NK +L ++A +A+   E L  D+ 
Sbjct  160  KKLGLTMQEFGYEVSNSPRSTVSTWEHGGNLP---NKAKLKKIADIANCSVEDLLFDEG  215


>gi|343513085|ref|ZP_08750197.1| putative ribosomal large chain pseudouridine synthase A [Vibrio 
scophthalmi LMG 19158]
 gi|342794053|gb|EGU29836.1| putative ribosomal large chain pseudouridine synthase A [Vibrio 
scophthalmi LMG 19158]
Length=572

 Score = 36.2 bits (82),  Expect = 1.8, Method: Composition-based stats.
 Identities = 22/60 (37%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query  54   IELAYVADALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV  113
            +E  + AD   EV+ +D+A V +  P+ LL    P   ++D  Y RV A+ +  AEG FV
Sbjct  358  LEDNWAADKALEVIYQDEAIVVVNKPSGLLS--VPGKTIKDSAYTRVQAMFNDNAEGPFV  415


>gi|162448119|ref|YP_001621251.1| membrane-anchored DNA-binding protein [Acholeplasma laidlawii 
PG-8A]
 gi|161986226|gb|ABX81875.1| membrane-anchored DNA-binding protein, putative [Acholeplasma 
laidlawii PG-8A]
Length=231

 Score = 36.2 bits (82),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 15/38 (40%), Positives = 27/38 (72%), Gaps = 3/38 (7%)

Query  20  TYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELA  57
           T EE+G+++D S +S+++W + Q  P+    Q+LIEL+
Sbjct  17  TQEELGELLDVSRQSISKWESDQAFPE---TQKLIELS  51


>gi|329768028|ref|ZP_08259539.1| hypothetical protein HMPREF0428_01236 [Gemella haemolysans M341]
 gi|328838513|gb|EGF88121.1| hypothetical protein HMPREF0428_01236 [Gemella haemolysans M341]
Length=361

 Score = 35.8 bits (81),  Expect = 2.0, Method: Composition-based stats.
 Identities = 16/43 (38%), Positives = 26/43 (61%), Gaps = 3/43 (6%)

Query  18  GLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVA  60
           G TYE+ GD   AS  ++  W  G+ +P   NK+RL+ ++ +A
Sbjct  22  GYTYEKFGDFFGASRGNIQAWEYGKALP---NKERLVNISKIA  61


>gi|336171415|ref|YP_004578553.1| hypothetical protein Lacal_0272 [Lacinutrix sp. 5H-3-7-4]
 gi|334725987|gb|AEH00125.1| Conserved hypothetical protein CHP02293 [Lacinutrix sp. 5H-3-7-4]
Length=167

 Score = 35.8 bits (81),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 21/77 (28%), Positives = 41/77 (54%), Gaps = 2/77 (2%)

Query  17   LGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPR-DQANVW  75
            LG++ E + D++  S R++ R +   ++    + ++++E+A V     EVL   D    W
Sbjct  70   LGISMEHMSDLIHVSHRTIQRKSDSDLL-NVYSTEQILEIAQVVSRGIEVLGTLDNFTSW  128

Query  76   MFSPNRLLEHRKPADLV  92
            + S  R+L + KP  L+
Sbjct  129  LHSDIRVLNYNKPISLL  145


>gi|50121728|ref|YP_050895.1| hypothetical protein ECA2804 [Pectobacterium atrosepticum SCRI1043]
 gi|49612254|emb|CAG75704.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043]
Length=147

 Score = 35.8 bits (81),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 28/85 (33%), Positives = 45/85 (53%), Gaps = 13/85 (15%)

Query  33   RSV-ARWTAGQVVPQRLNKQRLIELAYVADALAEVLP--RDQANVWMFSPNRLLEHRKPA  89
            RSV AR++A Q        +RL+ +  V D   E+    +D+A  W+  PNR L  + PA
Sbjct  70   RSVKARFSADQ-------SERLVRIIRVIDRTVELFEGDKDEAQKWLNEPNRALGGKVPA  122

Query  90   DLV--RDGEYQRVLALIDAMAEGVF  112
            +L+    G Y+ V+ L+  +  GV+
Sbjct  123  ELMVSETGAYE-VMKLLTRLEHGVY  146


>gi|343514551|ref|ZP_08751620.1| putative ribosomal large chain pseudouridine synthase A [Vibrio 
sp. N418]
 gi|342799628|gb|EGU35185.1| putative ribosomal large chain pseudouridine synthase A [Vibrio 
sp. N418]
Length=572

 Score = 35.8 bits (81),  Expect = 2.4, Method: Composition-based stats.
 Identities = 22/60 (37%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query  54   IELAYVADALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEGVFV  113
            +E  + AD   EV+ +D+A V +  P+ LL    P   ++D  Y RV A+ +  AEG FV
Sbjct  358  LEDNWAADKALEVIYQDEAIVVVNKPSGLLS--VPGKTIKDSAYTRVQAMFNDDAEGPFV  415


>gi|294631390|ref|ZP_06709950.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces 
sp. e14]
 gi|292834723|gb|EFF93072.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces 
sp. e14]
Length=127

 Score = 35.4 bits (80),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 29/110 (27%), Positives = 46/110 (42%), Gaps = 4/110 (3%)

Query  1    MGVNVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVA  60
            +G+  +A  +     +  + Y  V  I DA  + V RW  GQ  P+  ++ RL     V 
Sbjct  20   LGIPEIARFLQEQFSQRTVAY--VAGIEDA--KQVGRWCRGQNNPRFDSEFRLRTAFQVF  75

Query  61   DALAEVLPRDQANVWMFSPNRLLEHRKPADLVRDGEYQRVLALIDAMAEG  110
              + E   R  A  WM   N  LE   P   + D  ++ V+A   +  +G
Sbjct  76   RYIEECENRHVARAWMMGMNPQLEDSSPLQAIADDHFKEVMAAARSYRQG  125


>gi|190015863|ref|YP_001965072.1| hypothetical protein pRL1.2 [Streptomyces sp. 44030]
 gi|190015893|ref|YP_001965102.1| hypothetical protein pRL1.32c [Streptomyces sp. 44030]
 gi|84872592|gb|ABC67331.1| hypothetical protein pRL1.2 [Streptomyces sp. 44030]
 gi|84872622|gb|ABC67361.1| hypothetical protein pRL1.32c [Streptomyces sp. 44030]
Length=135

 Score = 35.4 bits (80),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 20/71 (29%), Positives = 34/71 (48%), Gaps = 0/71 (0%)

Query  32   PRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQANVWMFSPNRLLEHRKPADL  91
            P++VARW+ G   P+   +++L     V   L +         W    N  L+   PA++
Sbjct  57   PKNVARWSRGDHSPRPDTERKLRAAFQVFQLLQQYDSEGVVRAWFIGMNPHLDDESPAEV  116

Query  92   VRDGEYQRVLA  102
            +RDG  + VL+
Sbjct  117  LRDGRLREVLS  127


>gi|257413954|ref|ZP_04744773.2| transcriptional regulator [Roseburia intestinalis L1-82]
 gi|257201706|gb|EEU99990.1| transcriptional regulator [Roseburia intestinalis L1-82]
Length=170

 Score = 35.4 bits (80),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 17/70 (25%), Positives = 41/70 (59%), Gaps = 2/70 (2%)

Query  4   NVLASTVSGAIERLGLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADAL  63
           N+L+  +    +R G++ E++ ++ + S ++V++W +G+ +P  +   R+ E   V  AL
Sbjct  26  NMLSDNIQLLRKRAGMSQEQLAELTETSRQTVSKWESGESIPDVIACDRMAEAFGV--AL  83

Query  64  AEVLPRDQAN  73
            ++L  ++ N
Sbjct  84  EDMLHYEEKN  93


>gi|329119145|ref|ZP_08247836.1| helix-turn-helix domain protein [Neisseria bacilliformis ATCC 
BAA-1200]
 gi|327464776|gb|EGF11070.1| helix-turn-helix domain protein [Neisseria bacilliformis ATCC 
BAA-1200]
Length=119

 Score = 35.4 bits (80),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 23/57 (41%), Positives = 32/57 (57%), Gaps = 8/57 (14%)

Query  18  GLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYV-----ADALAEVLPR  69
           GLT E+V +I+     +V+R   G ++P   N  RL+ELA +     AD LAE  PR
Sbjct  24  GLTQEQVAEILQIGNEAVSRMERGLIMP---NVVRLVELAEIFQCTAADLLAESSPR  77


>gi|293378033|ref|ZP_06624210.1| DNA-binding protein [Enterococcus faecium PC4.1]
 gi|292643351|gb|EFF61484.1| DNA-binding protein [Enterococcus faecium PC4.1]
Length=265

 Score = 35.0 bits (79),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 20/65 (31%), Positives = 34/65 (53%), Gaps = 4/65 (6%)

Query  2   GVNVLASTVSGAIERLGLTYEEVGDIVDASP-RSVARWTAGQVVPQRLNKQRLIELAYVA  60
            +++ +  +   IE  GLT E  GD++  +P  SV  W  G  +P   NK RL+ +A + 
Sbjct  4   NLSLTSERIRKIIESKGLTLERFGDLIGDTPISSVNNWLRGVSLP---NKNRLLTIANIG  60

Query  61  DALAE  65
           +  A+
Sbjct  61  NTSAD  65


>gi|227552269|ref|ZP_03982318.1| transcriptional regulator [Enterococcus faecium TX1330]
 gi|257870781|ref|ZP_05650434.1| helix-turn-helix domain-containing protein [Enterococcus gallinarum 
EG2]
 gi|257876358|ref|ZP_05656011.1| helix-turn-helix domain-containing protein [Enterococcus casseliflavus 
EC20]
 17 more sequence titles
 Length=265

 Score = 35.0 bits (79),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 20/65 (31%), Positives = 34/65 (53%), Gaps = 4/65 (6%)

Query  2   GVNVLASTVSGAIERLGLTYEEVGDIVDASP-RSVARWTAGQVVPQRLNKQRLIELAYVA  60
            +++ +  +   IE  GLT E  GD++  +P  SV  W  G  +P   NK RL+ +A + 
Sbjct  4   NLSLTSERIRKIIESKGLTLERFGDLIGDTPISSVNNWLRGVSLP---NKNRLLTIANIG  60

Query  61  DALAE  65
           +  A+
Sbjct  61  NTSAD  65


>gi|167755003|ref|ZP_02427130.1| hypothetical protein CLORAM_00507 [Clostridium ramosum DSM 1402]
 gi|167705053|gb|EDS19632.1| hypothetical protein CLORAM_00507 [Clostridium ramosum DSM 1402]
Length=221

 Score = 35.0 bits (79),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 13/32 (41%), Positives = 23/32 (72%), Gaps = 0/32 (0%)

Query  15  ERLGLTYEEVGDIVDASPRSVARWTAGQVVPQ  46
           +R GLT EE+ D+++ S ++V +W +G V+P 
Sbjct  11  KRKGLTQEELADLLEVSRQTVTKWESGSVLPN  42


>gi|237735272|ref|ZP_04565753.1| transcriptional regulator [Mollicutes bacterium D7]
 gi|229381017|gb|EEO31108.1| transcriptional regulator [Coprobacillus sp. D7]
Length=221

 Score = 35.0 bits (79),  Expect = 3.6, Method: Compositional matrix adjust.
 Identities = 13/32 (41%), Positives = 23/32 (72%), Gaps = 0/32 (0%)

Query  15  ERLGLTYEEVGDIVDASPRSVARWTAGQVVPQ  46
           +R GLT EE+ D+++ S ++V +W +G V+P 
Sbjct  11  KRKGLTQEELADLLEVSRQTVTKWESGSVLPN  42


>gi|302875363|ref|YP_003843996.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 
743B]
 gi|307688943|ref|ZP_07631389.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 
743B]
 gi|302578220|gb|ADL52232.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B]
Length=226

 Score = 35.0 bits (79),  Expect = 4.1, Method: Compositional matrix adjust.
 Identities = 20/75 (27%), Positives = 37/75 (50%), Gaps = 3/75 (4%)

Query  18  GLTYEEVGDIVDASPRSVARWTAGQVVPQRLNKQRLIELAYVADALAEVLPRDQANVWMF  77
           GLT EE  + +  S ++VA+W AGQ  P   +  RLIE++ +     + L +D      F
Sbjct  15  GLTQEEFAETIGVSRQAVAKWEAGQSYP---DLDRLIEISNLYKVSIDKLVKDCKENCSF  71

Query  78  SPNRLLEHRKPADLV  92
           +  +  +     +++
Sbjct  72  NEEKTYKDYADNEMI  86


>gi|238549613|dbj|BAH65964.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. 
pneumoniae NTUH-K2044]
Length=174

 Score = 34.7 bits (78),  Expect = 4.2, Method: Compositional matrix adjust.
 Identities = 26/81 (33%), Positives = 40/81 (50%), Gaps = 8/81 (9%)

Query  39   TAGQVVPQRLN---KQRLIELAYVADALAEVLPRDQ--ANVWMFSPNRLLEHRKPADLV-  92
            T  + V  R N    +RL+ +  V D   ++   D+  A  W+  PNR L  + PADL+ 
Sbjct  94   TFSRSVKARFNPEQSERLVRIIRVIDRAVDLFEGDKEAAQKWLNEPNRALSWKVPADLMA  153

Query  93   -RDGEYQRVLALIDAMAEGVF  112
               G Y+ V+ LI  +  GV+
Sbjct  154  SETGAYE-VIKLITRLEHGVY  173


>gi|317048091|ref|YP_004115739.1| hypothetical protein Pat9b_1867 [Pantoea sp. At-9b]
 gi|316949708|gb|ADU69183.1| conserved hypothetical protein [Pantoea sp. At-9b]
Length=147

 Score = 34.7 bits (78),  Expect = 4.2, Method: Compositional matrix adjust.
 Identities = 23/68 (34%), Positives = 35/68 (52%), Gaps = 5/68 (7%)

Query  49   NKQRLIELAYVADALAEVLP--RDQANVWMFSPNRLLEHRKPADLVRD--GEYQRVLALI  104
              +RL+    V D   E+    R++A  W+  P R L ++KP D+V    G Y+ VL LI
Sbjct  80   QSERLVRFIRVMDRAVELFEGDREKALQWLNEPARALGNQKPGDIVSSETGAYE-VLKLI  138

Query  105  DAMAEGVF  112
              +  GV+
Sbjct  139  TRLEHGVY  146


>gi|168998600|ref|YP_001687868.1| hypothetical protein pK2044_00180 [Klebsiella pneumoniae NTUH-K2044]
 gi|206575636|ref|YP_002235694.1| conserved hypothetical protein TIGR02293 [Klebsiella pneumoniae 
342]
 gi|206570480|gb|ACI12126.1| conserved hypothetical protein TIGR02293 [Klebsiella pneumoniae 
342]
 gi|339764856|gb|AEK01076.1| hypothetical protein KPN2242_26286 [Klebsiella pneumoniae KCTC 
2242]
Length=147

 Score = 34.7 bits (78),  Expect = 4.2, Method: Compositional matrix adjust.
 Identities = 26/81 (33%), Positives = 40/81 (50%), Gaps = 8/81 (9%)

Query  39   TAGQVVPQRLN---KQRLIELAYVADALAEVLPRDQ--ANVWMFSPNRLLEHRKPADLV-  92
            T  + V  R N    +RL+ +  V D   ++   D+  A  W+  PNR L  + PADL+ 
Sbjct  67   TFSRSVKARFNPEQSERLVRIIRVIDRAVDLFEGDKEAAQKWLNEPNRALSWKVPADLMA  126

Query  93   -RDGEYQRVLALIDAMAEGVF  112
               G Y+ V+ LI  +  GV+
Sbjct  127  SETGAYE-VIKLITRLEHGVY  146



Lambda     K      H
   0.320    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127560148160


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40