BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1993c
Length=90
Score E
Sequences producing significant alignments: (Bits) Value
gi|167970478|ref|ZP_02552755.1| hypothetical protein MtubH3_2159... 169 1e-40
gi|15609130|ref|NP_216509.1| hypothetical protein Rv1993c [Mycob... 167 5e-40
gi|340627004|ref|YP_004745456.1| hypothetical protein MCAN_20131... 164 4e-39
gi|289570093|ref|ZP_06450320.1| conserved hypothetical protein [... 144 4e-33
gi|296165061|ref|ZP_06847615.1| conserved hypothetical protein [... 115 2e-24
gi|333991660|ref|YP_004524274.1| hypothetical protein JDM601_302... 103 8e-21
gi|254821358|ref|ZP_05226359.1| hypothetical protein MintA_15582... 99.8 1e-19
gi|118463473|ref|YP_883375.1| hypothetical protein MAV_4234 [Myc... 99.8 1e-19
gi|342861473|ref|ZP_08718120.1| hypothetical protein MCOL_21411 ... 99.4 2e-19
gi|41409481|ref|NP_962317.1| hypothetical protein MAP3383 [Mycob... 98.6 3e-19
gi|15842859|ref|NP_337896.1| hypothetical protein MT3369 [Mycoba... 97.1 8e-19
gi|15610405|ref|NP_217786.1| hypothetical protein Rv3269 [Mycoba... 96.7 1e-18
gi|308232401|ref|ZP_07415935.2| hypothetical protein TMAG_02722 ... 96.3 1e-18
gi|240172498|ref|ZP_04751157.1| hypothetical protein MkanA1_2450... 95.5 2e-18
gi|296164259|ref|ZP_06846848.1| conserved hypothetical protein [... 94.7 4e-18
gi|15827316|ref|NP_301579.1| hypothetical protein ML0748 [Mycoba... 93.2 1e-17
gi|183982159|ref|YP_001850450.1| hypothetical protein MMAR_2146 ... 92.4 2e-17
gi|226359852|ref|YP_002777630.1| hypothetical protein ROP_04380 ... 90.5 8e-17
gi|296168935|ref|ZP_06850604.1| conserved hypothetical protein [... 89.4 2e-16
gi|118467605|ref|YP_890281.1| hypothetical protein MSMEG_6059 [M... 88.2 3e-16
gi|296164289|ref|ZP_06846875.1| conserved hypothetical protein [... 87.4 6e-16
gi|118618085|ref|YP_906417.1| hypothetical protein MUL_2615 [Myc... 87.0 8e-16
gi|325000600|ref|ZP_08121712.1| hypothetical protein PseP1_17612... 82.0 3e-14
gi|240171334|ref|ZP_04749993.1| hypothetical protein MkanA1_1862... 76.6 1e-12
gi|340625980|ref|YP_004744432.1| hypothetical protein MCAN_09721... 75.5 2e-12
gi|15840394|ref|NP_335431.1| hypothetical protein MT0996 [Mycoba... 75.5 2e-12
gi|15608108|ref|NP_215483.1| hypothetical protein Rv0968 [Mycoba... 75.5 3e-12
gi|183981452|ref|YP_001849743.1| hypothetical protein MMAR_1430 ... 70.1 1e-10
gi|296164642|ref|ZP_06847208.1| conserved hypothetical protein [... 68.6 3e-10
gi|333919412|ref|YP_004492993.1| hypothetical protein AS9A_1744 ... 60.8 7e-08
gi|296165052|ref|ZP_06847606.1| conserved hypothetical protein [... 59.7 1e-07
gi|258653982|ref|YP_003203138.1| hypothetical protein Namu_3853 ... 53.9 8e-06
gi|183982550|ref|YP_001850841.1| hypothetical protein MMAR_2537 ... 53.5 9e-06
gi|183984843|ref|YP_001853134.1| hypothetical protein MMAR_4875 ... 47.4 7e-04
gi|118616275|ref|YP_904607.1| hypothetical protein MUL_0424 [Myc... 40.4 0.087
gi|289749496|ref|ZP_06508874.1| conserved hypothetical protein [... 39.3 0.18
gi|152964259|ref|YP_001360043.1| hypothetical protein Krad_0289 ... 38.1 0.40
gi|296164386|ref|ZP_06846962.1| conserved hypothetical protein [... 35.0 3.9
gi|78355546|ref|YP_386995.1| hypothetical protein Dde_0499 [Desu... 33.5 9.6
>gi|167970478|ref|ZP_02552755.1| hypothetical protein MtubH3_21593 [Mycobacterium tuberculosis
H37Ra]
Length=101
Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/90 (100%), Positives = 90/90 (100%), Gaps = 0/90 (0%)
Query 1 VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES 60
VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES
Sbjct 12 VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES 71
Query 61 ARLTVADVVAEARGRIGEEAPLPAGARVDE 90
ARLTVADVVAEARGRIGEEAPLPAGARVDE
Sbjct 72 ARLTVADVVAEARGRIGEEAPLPAGARVDE 101
>gi|15609130|ref|NP_216509.1| hypothetical protein Rv1993c [Mycobacterium tuberculosis H37Rv]
gi|15841475|ref|NP_336512.1| hypothetical protein MT2049 [Mycobacterium tuberculosis CDC1551]
gi|31793173|ref|NP_855666.1| hypothetical protein Mb2016c [Mycobacterium bovis AF2122/97]
64 more sequence titles
Length=90
Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 89/90 (99%), Positives = 90/90 (100%), Gaps = 0/90 (0%)
Query 1 VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES 60
+VTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES
Sbjct 1 MVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES 60
Query 61 ARLTVADVVAEARGRIGEEAPLPAGARVDE 90
ARLTVADVVAEARGRIGEEAPLPAGARVDE
Sbjct 61 ARLTVADVVAEARGRIGEEAPLPAGARVDE 90
>gi|340627004|ref|YP_004745456.1| hypothetical protein MCAN_20131 [Mycobacterium canettii CIPT
140010059]
gi|340005194|emb|CCC44345.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=90
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/90 (97%), Positives = 88/90 (98%), Gaps = 0/90 (0%)
Query 1 VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES 60
+VTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAE AAES
Sbjct 1 MVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEVAAES 60
Query 61 ARLTVADVVAEARGRIGEEAPLPAGARVDE 90
ARLTVADVVAEARGRIGEEAPLPAG RVDE
Sbjct 61 ARLTVADVVAEARGRIGEEAPLPAGTRVDE 90
>gi|289570093|ref|ZP_06450320.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289750575|ref|ZP_06509953.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289754099|ref|ZP_06513477.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289543847|gb|EFD47495.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289691162|gb|EFD58591.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289694686|gb|EFD62115.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=90
Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/90 (98%), Positives = 90/90 (100%), Gaps = 0/90 (0%)
Query 1 VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES 60
+VTHELLVKAAGAVLTGLVGVSAYET+RKALGTAPIRRASVTVMEWGLRGTRRAEAAAES
Sbjct 1 MVTHELLVKAAGAVLTGLVGVSAYETVRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES 60
Query 61 ARLTVADVVAEARGRIGEEAPLPAGARVDE 90
ARLTVADVVAEARGRIGEEAPLPAGARVDE
Sbjct 61 ARLTVADVVAEARGRIGEEAPLPAGARVDE 90
>gi|296165061|ref|ZP_06847615.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899593|gb|EFG79045.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=85
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/77 (76%), Positives = 66/77 (86%), Gaps = 0/77 (0%)
Query 14 VLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTVADVVAEAR 73
+ TGLVGVSAYE LRKA+GTAP+ RA+VTV EWGLRGTR AE AAESARL VADVVAEAR
Sbjct 1 MFTGLVGVSAYEVLRKAVGTAPVHRAAVTVTEWGLRGTRSAEVAAESARLKVADVVAEAR 60
Query 74 GRIGEEAPLPAGARVDE 90
GRIG++AP P A+ D+
Sbjct 61 GRIGDDAPRPPAAKADD 77
>gi|333991660|ref|YP_004524274.1| hypothetical protein JDM601_3020 [Mycobacterium sp. JDM601]
gi|333487628|gb|AEF37020.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=93
Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/79 (73%), Positives = 60/79 (76%), Gaps = 0/79 (0%)
Query 6 LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV 65
LL KAA V TGLVGVSAYE +RKAL AP+ A+V EW LRGTRRAE AESARL V
Sbjct 6 LLAKAATTVFTGLVGVSAYEVVRKALEKAPLHEAAVIATEWSLRGTRRAEEVAESARLKV 65
Query 66 ADVVAEARGRIGEEAPLPA 84
ADVVAEAR RIGEEA PA
Sbjct 66 ADVVAEARERIGEEATPPA 84
>gi|254821358|ref|ZP_05226359.1| hypothetical protein MintA_15582 [Mycobacterium intracellulare
ATCC 13950]
Length=93
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/79 (69%), Positives = 63/79 (80%), Gaps = 0/79 (0%)
Query 6 LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV 65
LL KAAG V+TGLVGV+AYE +RKA+ AP+ +V E GLRGTRRAE AAESARL +
Sbjct 6 LLAKAAGTVVTGLVGVTAYEVVRKAVAKAPLHETAVKGAELGLRGTRRAEEAAESARLRL 65
Query 66 ADVVAEARGRIGEEAPLPA 84
ADV+AEAR RIGEEAP P+
Sbjct 66 ADVMAEARERIGEEAPTPS 84
>gi|118463473|ref|YP_883375.1| hypothetical protein MAV_4234 [Mycobacterium avium 104]
gi|254776669|ref|ZP_05218185.1| hypothetical protein MaviaA2_18651 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118164760|gb|ABK65657.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=93
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/79 (68%), Positives = 63/79 (80%), Gaps = 0/79 (0%)
Query 6 LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV 65
LL KAAG V+TGLVGV+AYE +RKA+ AP+ +V E GLRGTR+AE AAESARL +
Sbjct 6 LLAKAAGTVVTGLVGVTAYEVVRKAVAKAPLHETAVKGAELGLRGTRKAEEAAESARLKL 65
Query 66 ADVVAEARGRIGEEAPLPA 84
ADV+AEAR RIGEEAP P+
Sbjct 66 ADVMAEARERIGEEAPTPS 84
>gi|342861473|ref|ZP_08718120.1| hypothetical protein MCOL_21411 [Mycobacterium colombiense CECT
3035]
gi|342130962|gb|EGT84251.1| hypothetical protein MCOL_21411 [Mycobacterium colombiense CECT
3035]
Length=93
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/79 (68%), Positives = 63/79 (80%), Gaps = 0/79 (0%)
Query 6 LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV 65
LL KAAG V+TGLVGV+AYE +RKA+ AP+ +V E GLRGTR+AE AAESARL +
Sbjct 6 LLAKAAGTVVTGLVGVTAYEVVRKAVAKAPLHETAVKGAELGLRGTRKAEEAAESARLRL 65
Query 66 ADVVAEARGRIGEEAPLPA 84
ADV+AEAR RIGEEAP P+
Sbjct 66 ADVMAEARERIGEEAPTPS 84
>gi|41409481|ref|NP_962317.1| hypothetical protein MAP3383 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398312|gb|AAS05933.1| hypothetical protein MAP_3383 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336459654|gb|EGO38589.1| Protein of unknown function (DUF1490) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=93
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/79 (66%), Positives = 62/79 (79%), Gaps = 0/79 (0%)
Query 6 LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV 65
LL KAAG V+TGLVGV+AYE +RKA+ AP+ +V E GLRGTR+AE AAESARL +
Sbjct 6 LLAKAAGTVVTGLVGVTAYEVVRKAVAKAPLHETAVKGAELGLRGTRKAEEAAESARLKL 65
Query 66 ADVVAEARGRIGEEAPLPA 84
ADV+AEAR RIGEE P P+
Sbjct 66 ADVMAEARERIGEETPTPS 84
>gi|15842859|ref|NP_337896.1| hypothetical protein MT3369 [Mycobacterium tuberculosis CDC1551]
gi|13883189|gb|AAK47710.1| hypothetical protein MT3369 [Mycobacterium tuberculosis CDC1551]
Length=145
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/79 (64%), Positives = 60/79 (76%), Gaps = 0/79 (0%)
Query 6 LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV 65
L KA V+TGL GV+AYE L+KA AP+R+ +V+ GLRGTR+AE AAESARL V
Sbjct 58 FLAKATTTVITGLAGVTAYEILKKAAAKAPLRQTAVSAAALGLRGTRKAEEAAESARLKV 117
Query 66 ADVVAEARGRIGEEAPLPA 84
ADV+AEAR RIGEE+P PA
Sbjct 118 ADVMAEARERIGEESPTPA 136
>gi|15610405|ref|NP_217786.1| hypothetical protein Rv3269 [Mycobacterium tuberculosis H37Rv]
gi|31794449|ref|NP_856942.1| hypothetical protein Mb3297 [Mycobacterium bovis AF2122/97]
gi|121639158|ref|YP_979382.1| hypothetical protein BCG_3298 [Mycobacterium bovis BCG str. Pasteur
1173P2]
65 more sequence titles
Length=93
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/79 (64%), Positives = 60/79 (76%), Gaps = 0/79 (0%)
Query 6 LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV 65
L KA V+TGL GV+AYE L+KA AP+R+ +V+ GLRGTR+AE AAESARL V
Sbjct 6 FLAKATTTVITGLAGVTAYEILKKAAAKAPLRQTAVSAAALGLRGTRKAEEAAESARLKV 65
Query 66 ADVVAEARGRIGEEAPLPA 84
ADV+AEAR RIGEE+P PA
Sbjct 66 ADVMAEARERIGEESPTPA 84
>gi|308232401|ref|ZP_07415935.2| hypothetical protein TMAG_02722 [Mycobacterium tuberculosis SUMu001]
gi|308370210|ref|ZP_07420657.2| hypothetical protein TMBG_01964 [Mycobacterium tuberculosis SUMu002]
gi|308373690|ref|ZP_07433333.2| hypothetical protein TMEG_03666 [Mycobacterium tuberculosis SUMu005]
9 more sequence titles
Length=89
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/79 (64%), Positives = 60/79 (76%), Gaps = 0/79 (0%)
Query 6 LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV 65
L KA V+TGL GV+AYE L+KA AP+R+ +V+ GLRGTR+AE AAESARL V
Sbjct 2 FLAKATTTVITGLAGVTAYEILKKAAAKAPLRQTAVSAAALGLRGTRKAEEAAESARLKV 61
Query 66 ADVVAEARGRIGEEAPLPA 84
ADV+AEAR RIGEE+P PA
Sbjct 62 ADVMAEARERIGEESPTPA 80
>gi|240172498|ref|ZP_04751157.1| hypothetical protein MkanA1_24500 [Mycobacterium kansasii ATCC
12478]
Length=93
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/79 (60%), Positives = 60/79 (76%), Gaps = 0/79 (0%)
Query 6 LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV 65
+ KAA V+TGL GV+AYE L+K AP+ + +V+ E GLRGTR+AE AAESARL +
Sbjct 6 IFAKAATTVITGLAGVTAYEVLKKVAAKAPLHQTAVSAAELGLRGTRKAEEAAESARLKI 65
Query 66 ADVVAEARGRIGEEAPLPA 84
+DV+AEAR R+GEEAP PA
Sbjct 66 SDVMAEARERVGEEAPTPA 84
>gi|296164259|ref|ZP_06846848.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295900385|gb|EFG79802.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=93
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/83 (70%), Positives = 67/83 (81%), Gaps = 0/83 (0%)
Query 1 VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES 60
+V H LL KA V TGLVGVSAYE +R+A+G AP+ RA+VT EWGLRGTRRAE AAE+
Sbjct 1 MVAHGLLAKATRTVFTGLVGVSAYEVVRRAVGNAPVHRAAVTATEWGLRGTRRAEVAAEA 60
Query 61 ARLTVADVVAEARGRIGEEAPLP 83
ARL VADVVAEAR RIG++A LP
Sbjct 61 ARLKVADVVAEARDRIGDDASLP 83
>gi|15827316|ref|NP_301579.1| hypothetical protein ML0748 [Mycobacterium leprae TN]
gi|221229794|ref|YP_002503210.1| hypothetical protein MLBr_00748 [Mycobacterium leprae Br4923]
gi|13092865|emb|CAC30257.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219932901|emb|CAR70842.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=92
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/85 (57%), Positives = 64/85 (76%), Gaps = 0/85 (0%)
Query 6 LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV 65
LL KAA V+TGL GV+AYE LRKA+ P+ + +V+ +E GLRG+R+AE AAESARL +
Sbjct 5 LLAKAATMVITGLTGVTAYEMLRKAVTKVPLHQIAVSALELGLRGSRKAEEAAESARLKL 64
Query 66 ADVVAEARGRIGEEAPLPAGARVDE 90
ADV+AEAR RIG+E PA + + +
Sbjct 65 ADVMAEARERIGKETTAPAVSDIHQ 89
>gi|183982159|ref|YP_001850450.1| hypothetical protein MMAR_2146 [Mycobacterium marinum M]
gi|183175485|gb|ACC40595.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=93
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/90 (66%), Positives = 68/90 (76%), Gaps = 0/90 (0%)
Query 1 VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES 60
++ H LL KA V+TG+VGVSAYE LRKALG+AP+ RA+V E GLRGTR AE AES
Sbjct 1 MIVHGLLAKAGATVVTGVVGVSAYELLRKALGSAPVHRAAVATTEVGLRGTRGAEKVAES 60
Query 61 ARLTVADVVAEARGRIGEEAPLPAGARVDE 90
ARL V+DVVAEAR RIGEEAP PA D+
Sbjct 61 ARLKVSDVVAEARERIGEEAPPPAIGNHDQ 90
>gi|226359852|ref|YP_002777630.1| hypothetical protein ROP_04380 [Rhodococcus opacus B4]
gi|226238337|dbj|BAH48685.1| hypothetical protein [Rhodococcus opacus B4]
Length=94
Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/74 (65%), Positives = 55/74 (75%), Gaps = 0/74 (0%)
Query 4 HELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARL 63
H LLVKAA V+TG VGV+AY RK + AP+ A+VT WGLRG R+AE AESARL
Sbjct 4 HILLVKAASTVVTGAVGVAAYNAARKVVAKAPLHEAAVTATAWGLRGARKAEEGAESARL 63
Query 64 TVADVVAEARGRIG 77
V+DVVAEARGRIG
Sbjct 64 KVSDVVAEARGRIG 77
>gi|296168935|ref|ZP_06850604.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896404|gb|EFG76057.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=99
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/84 (55%), Positives = 61/84 (73%), Gaps = 0/84 (0%)
Query 1 VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES 60
V+ H KAA + TG+ G +AY+ +RKA+ AP+ +V+ E GLRGTR+AE AAES
Sbjct 7 VIAHGAFGKAAAWLATGVAGAAAYDLVRKAVAKAPLHETAVSAAELGLRGTRKAEEAAES 66
Query 61 ARLTVADVVAEARGRIGEEAPLPA 84
ARL ++DV+AEAR R+GEEAP PA
Sbjct 67 ARLKISDVMAEARERVGEEAPTPA 90
>gi|118467605|ref|YP_890281.1| hypothetical protein MSMEG_6059 [Mycobacterium smegmatis str.
MC2 155]
gi|118168892|gb|ABK69788.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=94
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/84 (65%), Positives = 62/84 (74%), Gaps = 0/84 (0%)
Query 1 VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES 60
+V H LLVKAA V+TG VGV+AYE LRKA+ AP+R A+V LRG R+AE AES
Sbjct 1 MVWHGLLVKAATTVVTGAVGVAAYEGLRKAVAKAPVREAAVATTALALRGARKAEVGAES 60
Query 61 ARLTVADVVAEARGRIGEEAPLPA 84
ARL VADV+AEAR RIGEE P PA
Sbjct 61 ARLKVADVMAEARERIGEEVPPPA 84
>gi|296164289|ref|ZP_06846875.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295900351|gb|EFG79771.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=113
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/87 (61%), Positives = 62/87 (72%), Gaps = 5/87 (5%)
Query 1 VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAE----A 56
+V H LVKAA VLTG+VGV+AYE L K G AP+R+A+V WG+R R AE A
Sbjct 18 MVLHGFLVKAAPTVLTGVVGVAAYEALCKVAGKAPLRKATVIATAWGIRVVREAERTAGA 77
Query 57 AAESARLTVADVVAEARGRIGEEA-PL 82
+AE ARLTVADVVAEA+ R GEEA PL
Sbjct 78 SAEQARLTVADVVAEAKERAGEEAGPL 104
>gi|118618085|ref|YP_906417.1| hypothetical protein MUL_2615 [Mycobacterium ulcerans Agy99]
gi|183981294|ref|YP_001849585.1| hypothetical protein MMAR_1272 [Mycobacterium marinum M]
gi|118570195|gb|ABL04946.1| conserved protein [Mycobacterium ulcerans Agy99]
gi|183174620|gb|ACC39730.1| conserved protein [Mycobacterium marinum M]
Length=92
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/84 (54%), Positives = 61/84 (73%), Gaps = 0/84 (0%)
Query 1 VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES 60
+V + L K V+ G+VG +AY+ +RKA AP+R+ +V+ E LRGTR+AE AAES
Sbjct 1 MVAYGLFAKLGTLVVHGVVGAAAYDVVRKAAKKAPLRQTAVSAAELSLRGTRKAEEAAES 60
Query 61 ARLTVADVVAEARGRIGEEAPLPA 84
ARL ++DV++EAR RIGEEAP PA
Sbjct 61 ARLKISDVMSEARERIGEEAPTPA 84
>gi|325000600|ref|ZP_08121712.1| hypothetical protein PseP1_17612 [Pseudonocardia sp. P1]
Length=88
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/78 (56%), Positives = 55/78 (71%), Gaps = 0/78 (0%)
Query 6 LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV 65
++ KAAG V +GL G AY+ +++ + +R A+VTV WGLRG R AE AE ARL
Sbjct 1 MVGKAAGLVASGLAGAVAYDGVKRVARSGAVREAAVTVTGWGLRGARAAETGAEKARLAT 60
Query 66 ADVVAEARGRIGEEAPLP 83
AD+V+EARGRIGEEAP P
Sbjct 61 ADIVSEARGRIGEEAPAP 78
>gi|240171334|ref|ZP_04749993.1| hypothetical protein MkanA1_18626 [Mycobacterium kansasii ATCC
12478]
Length=99
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/83 (50%), Positives = 56/83 (68%), Gaps = 4/83 (4%)
Query 4 HELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRG----TRRAEAAAE 59
H LL K+ ++TG+VG +AYE LRK P+R A+V WGLRG R+A+ ++E
Sbjct 5 HGLLAKSVPTLVTGVVGAAAYEALRKTAVKVPLREATVATTAWGLRGLRTAERKAQQSSE 64
Query 60 SARLTVADVVAEARGRIGEEAPL 82
ARLT+ADV+AEA+ RIGE+ L
Sbjct 65 QARLTLADVIAEAKERIGEDVSL 87
>gi|340625980|ref|YP_004744432.1| hypothetical protein MCAN_09721 [Mycobacterium canettii CIPT
140010059]
gi|340004170|emb|CCC43309.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=98
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/94 (52%), Positives = 59/94 (63%), Gaps = 4/94 (4%)
Query 1 VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAE----A 56
+V H L KA V+TG VGV+AYE LRK + AP+R A+V+V WG+R R AE
Sbjct 1 MVWHGFLAKAVPTVVTGAVGVAAYEALRKVVVKAPLRAATVSVAAWGIRLAREAERKAGE 60
Query 57 AAESARLTVADVVAEARGRIGEEAPLPAGARVDE 90
+AE ARL ADV+AEA R GEE P A A D+
Sbjct 61 SAEQARLMFADVLAEASERAGEEVPPLAVAGSDD 94
>gi|15840394|ref|NP_335431.1| hypothetical protein MT0996 [Mycobacterium tuberculosis CDC1551]
gi|13880562|gb|AAK45245.1| hypothetical protein MT0996 [Mycobacterium tuberculosis CDC1551]
Length=118
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/94 (52%), Positives = 59/94 (63%), Gaps = 4/94 (4%)
Query 1 VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAE----A 56
+V H L KA V+TG VGV+AYE LRK + AP+R A+V+V WG+R R AE
Sbjct 21 MVWHGFLAKAVPTVVTGAVGVAAYEALRKMVVKAPLRAATVSVAAWGIRLAREAERKAGE 80
Query 57 AAESARLTVADVVAEARGRIGEEAPLPAGARVDE 90
+AE ARL ADV+AEA R GEE P A A D+
Sbjct 81 SAEQARLMFADVLAEASERAGEEVPPLAVAGSDD 114
>gi|15608108|ref|NP_215483.1| hypothetical protein Rv0968 [Mycobacterium tuberculosis H37Rv]
gi|31792157|ref|NP_854650.1| hypothetical protein Mb0993 [Mycobacterium bovis AF2122/97]
gi|121636894|ref|YP_977117.1| hypothetical protein BCG_1022 [Mycobacterium bovis BCG str. Pasteur
1173P2]
68 more sequence titles
Length=98
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/94 (52%), Positives = 59/94 (63%), Gaps = 4/94 (4%)
Query 1 VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAE----A 56
+V H L KA V+TG VGV+AYE LRK + AP+R A+V+V WG+R R AE
Sbjct 1 MVWHGFLAKAVPTVVTGAVGVAAYEALRKMVVKAPLRAATVSVAAWGIRLAREAERKAGE 60
Query 57 AAESARLTVADVVAEARGRIGEEAPLPAGARVDE 90
+AE ARL ADV+AEA R GEE P A A D+
Sbjct 61 SAEQARLMFADVLAEASERAGEEVPPLAVAGSDD 94
>gi|183981452|ref|YP_001849743.1| hypothetical protein MMAR_1430 [Mycobacterium marinum M]
gi|183174778|gb|ACC39888.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=98
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/82 (61%), Positives = 57/82 (70%), Gaps = 5/82 (6%)
Query 6 LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAE----AAAESA 61
+VK A AV TG+VGV AYE LRK L AP+R+ASV WGLR R AE +AE A
Sbjct 6 FVVKGAHAVGTGVVGVVAYEALRKTLAKAPLRKASVATTAWGLRVVREAERKAGQSAEQA 65
Query 62 RLTVADVVAEARGRIGEE-APL 82
RLTVADV+AEA+ R GEE APL
Sbjct 66 RLTVADVMAEAKERAGEEVAPL 87
>gi|296164642|ref|ZP_06847208.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899950|gb|EFG79390.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=90
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/93 (53%), Positives = 59/93 (64%), Gaps = 10/93 (10%)
Query 4 HELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEA----AAE 59
H + KA V+TG+VGV+AYE L KA P R+A+V WG+R R AE +AE
Sbjct 2 HGFVAKAMPTVMTGVVGVAAYEALAKA----PWRKATVVATAWGIRVAREAERKAGRSAE 57
Query 60 SARLTVADVVAEARGRIGEE-APLP-AGARVDE 90
ARLTVADV+AEAR R G E APL AG+ DE
Sbjct 58 QARLTVADVMAEARERAGSEAAPLTVAGSGEDE 90
>gi|333919412|ref|YP_004492993.1| hypothetical protein AS9A_1744 [Amycolicicoccus subflavus DQS3-9A1]
gi|333481633|gb|AEF40193.1| hypothetical protein AS9A_1744 [Amycolicicoccus subflavus DQS3-9A1]
Length=94
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/78 (54%), Positives = 53/78 (68%), Gaps = 0/78 (0%)
Query 6 LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV 65
LL KA G V+TG+VGV+AY R P R +V+ G++G R+AE AE+ RLT
Sbjct 6 LLGKALGTVVTGVVGVAAYNGARWVAKKTPTREIAVSATALGIKGARKAEEGAENVRLTA 65
Query 66 ADVVAEARGRIGEEAPLP 83
AD+VAEARGR+GEEAP P
Sbjct 66 ADIVAEARGRVGEEAPPP 83
>gi|296165052|ref|ZP_06847606.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899584|gb|EFG79036.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=139
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/80 (54%), Positives = 55/80 (69%), Gaps = 4/80 (5%)
Query 4 HELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESA-- 61
H L+KAA V+TG+VGV+AYE +R A+ P+R A+V V WG+R R A+ AE+
Sbjct 45 HGFLMKAAPTVVTGVVGVAAYEAVRTAVAKVPLRTATVAVTAWGIRAAREAQRTAETNTE 104
Query 62 --RLTVADVVAEARGRIGEE 79
RLTVADVVAEAR R GE+
Sbjct 105 QIRLTVADVVAEARERAGED 124
>gi|258653982|ref|YP_003203138.1| hypothetical protein Namu_3853 [Nakamurella multipartita DSM
44233]
gi|258557207|gb|ACV80149.1| hypothetical protein Namu_3853 [Nakamurella multipartita DSM
44233]
Length=94
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/84 (43%), Positives = 52/84 (62%), Gaps = 0/84 (0%)
Query 1 VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES 60
+VT L +AAG +++G+ G + L++ + +A+V V LRG RR EA AE+
Sbjct 1 MVTGHLAARAAGMLISGVAGAIVVDRLKQRSTGRGLNQAAVAVTALALRGKRRVEAGAEN 60
Query 61 ARLTVADVVAEARGRIGEEAPLPA 84
RL DVVA+AR +IGE+AP PA
Sbjct 61 LRLGAGDVVAQAREKIGEQAPPPA 84
>gi|183982550|ref|YP_001850841.1| hypothetical protein MMAR_2537 [Mycobacterium marinum M]
gi|183175876|gb|ACC40986.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=101
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/79 (47%), Positives = 47/79 (60%), Gaps = 8/79 (10%)
Query 9 KAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTR----RAEAAAESARLT 64
KA V+TG VGV+AYE + P R+A+V GLR R + + AAE A+L
Sbjct 9 KAVHTVVTGAVGVAAYEVFVRV----PWRKATVGATALGLRAGRTTGRKTKEAAERAQLA 64
Query 65 VADVVAEARGRIGEEAPLP 83
VADV+AEA RIGE+ P P
Sbjct 65 VADVLAEAAERIGEQVPRP 83
>gi|183984843|ref|YP_001853134.1| hypothetical protein MMAR_4875 [Mycobacterium marinum M]
gi|183178169|gb|ACC43279.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=102
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 50/86 (59%), Gaps = 9/86 (10%)
Query 4 HELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAE----AAAE 59
H L KA +V+TG+VGV+ YE AL AP R A+VT WGLR R E A E
Sbjct 5 HGLWTKAVPSVVTGVVGVATYE----ALAKAPWRSATVTATVWGLRTARTTERKTKQATE 60
Query 60 SARLTVADVVAEARGRIGEE-APLPA 84
RL ADV+AEA R+G E AP PA
Sbjct 61 RVRLAAADVLAEAVERVGAEVAPPPA 86
>gi|118616275|ref|YP_904607.1| hypothetical protein MUL_0424 [Mycobacterium ulcerans Agy99]
gi|118568385|gb|ABL03136.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=102
Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 40/86 (47%), Positives = 48/86 (56%), Gaps = 8/86 (9%)
Query 4 HELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRA----EAAAE 59
H L KA +V+TG+VGV+ YE AL AP R A+VT WGLR R + A E
Sbjct 5 HGLWTKAVPSVVTGVVGVATYE----ALAKAPWRSATVTATAWGLRTARTTERRTKQATE 60
Query 60 SARLTVADVVAEARGRIGEEAPLPAG 85
RL ADV+AEA R+G E PA
Sbjct 61 RVRLAAADVLAEAVERVGAEVAPPAA 86
>gi|289749496|ref|ZP_06508874.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289690083|gb|EFD57512.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=54
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/47 (52%), Positives = 32/47 (69%), Gaps = 4/47 (8%)
Query 14 VLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES 60
++TG VGV+AYE LRK + AP+R A+V+V RG RRA +A S
Sbjct 1 MVTGAVGVAAYEALRKMVVKAPLRAATVSVD----RGARRARLSANS 43
>gi|152964259|ref|YP_001360043.1| hypothetical protein Krad_0289 [Kineococcus radiotolerans SRS30216]
gi|151358776|gb|ABS01779.1| hypothetical protein Krad_0289 [Kineococcus radiotolerans SRS30216]
Length=102
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/69 (32%), Positives = 35/69 (51%), Gaps = 0/69 (0%)
Query 15 LTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTVADVVAEARG 74
LT + + L G +RR +V + G++ +R AE E RL D+VA+A
Sbjct 23 LTAVASAGIVKALGDGRGGNALRRLAVNGAKAGIKASRAAETGVERLRLGTGDIVAQAYD 82
Query 75 RIGEEAPLP 83
+GE+ P+P
Sbjct 83 ELGEQVPVP 91
>gi|296164386|ref|ZP_06846962.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295900266|gb|EFG79696.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=103
Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/48 (46%), Positives = 28/48 (59%), Gaps = 4/48 (8%)
Query 35 PIRRASVTVMEWGLRGTR----RAEAAAESARLTVADVVAEARGRIGE 78
P R+ +V GL+ TR + + AAE ARL ADV AEA R+GE
Sbjct 33 PWRKVTVGATAVGLQATRTTARKTKQAAEKARLATADVFAEAADRLGE 80
>gi|78355546|ref|YP_386995.1| hypothetical protein Dde_0499 [Desulfovibrio alaskensis G20]
gi|78217951|gb|ABB37300.1| hypothetical protein Dde_0499 [Desulfovibrio alaskensis G20]
Length=82
Score = 33.5 bits (75), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/66 (35%), Positives = 37/66 (57%), Gaps = 7/66 (10%)
Query 18 LVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTVADVVAEARGRIG 77
++G++AY + L +R+A+V V+ G++ + AE + AR V D+V EAR
Sbjct 16 VIGLAAYAVYKSGL----LRKAAVGVIRGGVKASAWAEDRYKCARDNVKDMVEEAR---K 68
Query 78 EEAPLP 83
E AP P
Sbjct 69 EPAPCP 74
Lambda K H
0.316 0.130 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129182109240
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40