BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv1993c

Length=90
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|167970478|ref|ZP_02552755.1|  hypothetical protein MtubH3_2159...   169    1e-40
gi|15609130|ref|NP_216509.1|  hypothetical protein Rv1993c [Mycob...   167    5e-40
gi|340627004|ref|YP_004745456.1|  hypothetical protein MCAN_20131...   164    4e-39
gi|289570093|ref|ZP_06450320.1|  conserved hypothetical protein [...   144    4e-33
gi|296165061|ref|ZP_06847615.1|  conserved hypothetical protein [...   115    2e-24
gi|333991660|ref|YP_004524274.1|  hypothetical protein JDM601_302...   103    8e-21
gi|254821358|ref|ZP_05226359.1|  hypothetical protein MintA_15582...  99.8    1e-19
gi|118463473|ref|YP_883375.1|  hypothetical protein MAV_4234 [Myc...  99.8    1e-19
gi|342861473|ref|ZP_08718120.1|  hypothetical protein MCOL_21411 ...  99.4    2e-19
gi|41409481|ref|NP_962317.1|  hypothetical protein MAP3383 [Mycob...  98.6    3e-19
gi|15842859|ref|NP_337896.1|  hypothetical protein MT3369 [Mycoba...  97.1    8e-19
gi|15610405|ref|NP_217786.1|  hypothetical protein Rv3269 [Mycoba...  96.7    1e-18
gi|308232401|ref|ZP_07415935.2|  hypothetical protein TMAG_02722 ...  96.3    1e-18
gi|240172498|ref|ZP_04751157.1|  hypothetical protein MkanA1_2450...  95.5    2e-18
gi|296164259|ref|ZP_06846848.1|  conserved hypothetical protein [...  94.7    4e-18
gi|15827316|ref|NP_301579.1|  hypothetical protein ML0748 [Mycoba...  93.2    1e-17
gi|183982159|ref|YP_001850450.1|  hypothetical protein MMAR_2146 ...  92.4    2e-17
gi|226359852|ref|YP_002777630.1|  hypothetical protein ROP_04380 ...  90.5    8e-17
gi|296168935|ref|ZP_06850604.1|  conserved hypothetical protein [...  89.4    2e-16
gi|118467605|ref|YP_890281.1|  hypothetical protein MSMEG_6059 [M...  88.2    3e-16
gi|296164289|ref|ZP_06846875.1|  conserved hypothetical protein [...  87.4    6e-16
gi|118618085|ref|YP_906417.1|  hypothetical protein MUL_2615 [Myc...  87.0    8e-16
gi|325000600|ref|ZP_08121712.1|  hypothetical protein PseP1_17612...  82.0    3e-14
gi|240171334|ref|ZP_04749993.1|  hypothetical protein MkanA1_1862...  76.6    1e-12
gi|340625980|ref|YP_004744432.1|  hypothetical protein MCAN_09721...  75.5    2e-12
gi|15840394|ref|NP_335431.1|  hypothetical protein MT0996 [Mycoba...  75.5    2e-12
gi|15608108|ref|NP_215483.1|  hypothetical protein Rv0968 [Mycoba...  75.5    3e-12
gi|183981452|ref|YP_001849743.1|  hypothetical protein MMAR_1430 ...  70.1    1e-10
gi|296164642|ref|ZP_06847208.1|  conserved hypothetical protein [...  68.6    3e-10
gi|333919412|ref|YP_004492993.1|  hypothetical protein AS9A_1744 ...  60.8    7e-08
gi|296165052|ref|ZP_06847606.1|  conserved hypothetical protein [...  59.7    1e-07
gi|258653982|ref|YP_003203138.1|  hypothetical protein Namu_3853 ...  53.9    8e-06
gi|183982550|ref|YP_001850841.1|  hypothetical protein MMAR_2537 ...  53.5    9e-06
gi|183984843|ref|YP_001853134.1|  hypothetical protein MMAR_4875 ...  47.4    7e-04
gi|118616275|ref|YP_904607.1|  hypothetical protein MUL_0424 [Myc...  40.4    0.087
gi|289749496|ref|ZP_06508874.1|  conserved hypothetical protein [...  39.3    0.18 
gi|152964259|ref|YP_001360043.1|  hypothetical protein Krad_0289 ...  38.1    0.40 
gi|296164386|ref|ZP_06846962.1|  conserved hypothetical protein [...  35.0    3.9  
gi|78355546|ref|YP_386995.1|  hypothetical protein Dde_0499 [Desu...  33.5    9.6  


>gi|167970478|ref|ZP_02552755.1| hypothetical protein MtubH3_21593 [Mycobacterium tuberculosis 
H37Ra]
Length=101

 Score =  169 bits (427),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 90/90 (100%), Positives = 90/90 (100%), Gaps = 0/90 (0%)

Query  1    VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES  60
            VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES
Sbjct  12   VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES  71

Query  61   ARLTVADVVAEARGRIGEEAPLPAGARVDE  90
            ARLTVADVVAEARGRIGEEAPLPAGARVDE
Sbjct  72   ARLTVADVVAEARGRIGEEAPLPAGARVDE  101


>gi|15609130|ref|NP_216509.1| hypothetical protein Rv1993c [Mycobacterium tuberculosis H37Rv]
 gi|15841475|ref|NP_336512.1| hypothetical protein MT2049 [Mycobacterium tuberculosis CDC1551]
 gi|31793173|ref|NP_855666.1| hypothetical protein Mb2016c [Mycobacterium bovis AF2122/97]
 64 more sequence titles
 Length=90

 Score =  167 bits (423),  Expect = 5e-40, Method: Compositional matrix adjust.
 Identities = 89/90 (99%), Positives = 90/90 (100%), Gaps = 0/90 (0%)

Query  1   VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES  60
           +VTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES
Sbjct  1   MVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES  60

Query  61  ARLTVADVVAEARGRIGEEAPLPAGARVDE  90
           ARLTVADVVAEARGRIGEEAPLPAGARVDE
Sbjct  61  ARLTVADVVAEARGRIGEEAPLPAGARVDE  90


>gi|340627004|ref|YP_004745456.1| hypothetical protein MCAN_20131 [Mycobacterium canettii CIPT 
140010059]
 gi|340005194|emb|CCC44345.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=90

 Score =  164 bits (415),  Expect = 4e-39, Method: Compositional matrix adjust.
 Identities = 87/90 (97%), Positives = 88/90 (98%), Gaps = 0/90 (0%)

Query  1   VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES  60
           +VTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAE AAES
Sbjct  1   MVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEVAAES  60

Query  61  ARLTVADVVAEARGRIGEEAPLPAGARVDE  90
           ARLTVADVVAEARGRIGEEAPLPAG RVDE
Sbjct  61  ARLTVADVVAEARGRIGEEAPLPAGTRVDE  90


>gi|289570093|ref|ZP_06450320.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289750575|ref|ZP_06509953.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289754099|ref|ZP_06513477.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289543847|gb|EFD47495.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289691162|gb|EFD58591.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289694686|gb|EFD62115.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=90

 Score =  144 bits (364),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 88/90 (98%), Positives = 90/90 (100%), Gaps = 0/90 (0%)

Query  1   VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES  60
           +VTHELLVKAAGAVLTGLVGVSAYET+RKALGTAPIRRASVTVMEWGLRGTRRAEAAAES
Sbjct  1   MVTHELLVKAAGAVLTGLVGVSAYETVRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES  60

Query  61  ARLTVADVVAEARGRIGEEAPLPAGARVDE  90
           ARLTVADVVAEARGRIGEEAPLPAGARVDE
Sbjct  61  ARLTVADVVAEARGRIGEEAPLPAGARVDE  90


>gi|296165061|ref|ZP_06847615.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899593|gb|EFG79045.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=85

 Score =  115 bits (289),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 58/77 (76%), Positives = 66/77 (86%), Gaps = 0/77 (0%)

Query  14  VLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTVADVVAEAR  73
           + TGLVGVSAYE LRKA+GTAP+ RA+VTV EWGLRGTR AE AAESARL VADVVAEAR
Sbjct  1   MFTGLVGVSAYEVLRKAVGTAPVHRAAVTVTEWGLRGTRSAEVAAESARLKVADVVAEAR  60

Query  74  GRIGEEAPLPAGARVDE  90
           GRIG++AP P  A+ D+
Sbjct  61  GRIGDDAPRPPAAKADD  77


>gi|333991660|ref|YP_004524274.1| hypothetical protein JDM601_3020 [Mycobacterium sp. JDM601]
 gi|333487628|gb|AEF37020.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=93

 Score =  103 bits (257),  Expect = 8e-21, Method: Compositional matrix adjust.
 Identities = 57/79 (73%), Positives = 60/79 (76%), Gaps = 0/79 (0%)

Query  6   LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV  65
           LL KAA  V TGLVGVSAYE +RKAL  AP+  A+V   EW LRGTRRAE  AESARL V
Sbjct  6   LLAKAATTVFTGLVGVSAYEVVRKALEKAPLHEAAVIATEWSLRGTRRAEEVAESARLKV  65

Query  66  ADVVAEARGRIGEEAPLPA  84
           ADVVAEAR RIGEEA  PA
Sbjct  66  ADVVAEARERIGEEATPPA  84


>gi|254821358|ref|ZP_05226359.1| hypothetical protein MintA_15582 [Mycobacterium intracellulare 
ATCC 13950]
Length=93

 Score = 99.8 bits (247),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 54/79 (69%), Positives = 63/79 (80%), Gaps = 0/79 (0%)

Query  6   LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV  65
           LL KAAG V+TGLVGV+AYE +RKA+  AP+   +V   E GLRGTRRAE AAESARL +
Sbjct  6   LLAKAAGTVVTGLVGVTAYEVVRKAVAKAPLHETAVKGAELGLRGTRRAEEAAESARLRL  65

Query  66  ADVVAEARGRIGEEAPLPA  84
           ADV+AEAR RIGEEAP P+
Sbjct  66  ADVMAEARERIGEEAPTPS  84


>gi|118463473|ref|YP_883375.1| hypothetical protein MAV_4234 [Mycobacterium avium 104]
 gi|254776669|ref|ZP_05218185.1| hypothetical protein MaviaA2_18651 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|118164760|gb|ABK65657.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=93

 Score = 99.8 bits (247),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 53/79 (68%), Positives = 63/79 (80%), Gaps = 0/79 (0%)

Query  6   LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV  65
           LL KAAG V+TGLVGV+AYE +RKA+  AP+   +V   E GLRGTR+AE AAESARL +
Sbjct  6   LLAKAAGTVVTGLVGVTAYEVVRKAVAKAPLHETAVKGAELGLRGTRKAEEAAESARLKL  65

Query  66  ADVVAEARGRIGEEAPLPA  84
           ADV+AEAR RIGEEAP P+
Sbjct  66  ADVMAEARERIGEEAPTPS  84


>gi|342861473|ref|ZP_08718120.1| hypothetical protein MCOL_21411 [Mycobacterium colombiense CECT 
3035]
 gi|342130962|gb|EGT84251.1| hypothetical protein MCOL_21411 [Mycobacterium colombiense CECT 
3035]
Length=93

 Score = 99.4 bits (246),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 53/79 (68%), Positives = 63/79 (80%), Gaps = 0/79 (0%)

Query  6   LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV  65
           LL KAAG V+TGLVGV+AYE +RKA+  AP+   +V   E GLRGTR+AE AAESARL +
Sbjct  6   LLAKAAGTVVTGLVGVTAYEVVRKAVAKAPLHETAVKGAELGLRGTRKAEEAAESARLRL  65

Query  66  ADVVAEARGRIGEEAPLPA  84
           ADV+AEAR RIGEEAP P+
Sbjct  66  ADVMAEARERIGEEAPTPS  84


>gi|41409481|ref|NP_962317.1| hypothetical protein MAP3383 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41398312|gb|AAS05933.1| hypothetical protein MAP_3383 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336459654|gb|EGO38589.1| Protein of unknown function (DUF1490) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=93

 Score = 98.6 bits (244),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 52/79 (66%), Positives = 62/79 (79%), Gaps = 0/79 (0%)

Query  6   LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV  65
           LL KAAG V+TGLVGV+AYE +RKA+  AP+   +V   E GLRGTR+AE AAESARL +
Sbjct  6   LLAKAAGTVVTGLVGVTAYEVVRKAVAKAPLHETAVKGAELGLRGTRKAEEAAESARLKL  65

Query  66  ADVVAEARGRIGEEAPLPA  84
           ADV+AEAR RIGEE P P+
Sbjct  66  ADVMAEARERIGEETPTPS  84


>gi|15842859|ref|NP_337896.1| hypothetical protein MT3369 [Mycobacterium tuberculosis CDC1551]
 gi|13883189|gb|AAK47710.1| hypothetical protein MT3369 [Mycobacterium tuberculosis CDC1551]
Length=145

 Score = 97.1 bits (240),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 50/79 (64%), Positives = 60/79 (76%), Gaps = 0/79 (0%)

Query  6    LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV  65
             L KA   V+TGL GV+AYE L+KA   AP+R+ +V+    GLRGTR+AE AAESARL V
Sbjct  58   FLAKATTTVITGLAGVTAYEILKKAAAKAPLRQTAVSAAALGLRGTRKAEEAAESARLKV  117

Query  66   ADVVAEARGRIGEEAPLPA  84
            ADV+AEAR RIGEE+P PA
Sbjct  118  ADVMAEARERIGEESPTPA  136


>gi|15610405|ref|NP_217786.1| hypothetical protein Rv3269 [Mycobacterium tuberculosis H37Rv]
 gi|31794449|ref|NP_856942.1| hypothetical protein Mb3297 [Mycobacterium bovis AF2122/97]
 gi|121639158|ref|YP_979382.1| hypothetical protein BCG_3298 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 65 more sequence titles
 Length=93

 Score = 96.7 bits (239),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 50/79 (64%), Positives = 60/79 (76%), Gaps = 0/79 (0%)

Query  6   LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV  65
            L KA   V+TGL GV+AYE L+KA   AP+R+ +V+    GLRGTR+AE AAESARL V
Sbjct  6   FLAKATTTVITGLAGVTAYEILKKAAAKAPLRQTAVSAAALGLRGTRKAEEAAESARLKV  65

Query  66  ADVVAEARGRIGEEAPLPA  84
           ADV+AEAR RIGEE+P PA
Sbjct  66  ADVMAEARERIGEESPTPA  84


>gi|308232401|ref|ZP_07415935.2| hypothetical protein TMAG_02722 [Mycobacterium tuberculosis SUMu001]
 gi|308370210|ref|ZP_07420657.2| hypothetical protein TMBG_01964 [Mycobacterium tuberculosis SUMu002]
 gi|308373690|ref|ZP_07433333.2| hypothetical protein TMEG_03666 [Mycobacterium tuberculosis SUMu005]
 9 more sequence titles
 Length=89

 Score = 96.3 bits (238),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 50/79 (64%), Positives = 60/79 (76%), Gaps = 0/79 (0%)

Query  6   LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV  65
            L KA   V+TGL GV+AYE L+KA   AP+R+ +V+    GLRGTR+AE AAESARL V
Sbjct  2   FLAKATTTVITGLAGVTAYEILKKAAAKAPLRQTAVSAAALGLRGTRKAEEAAESARLKV  61

Query  66  ADVVAEARGRIGEEAPLPA  84
           ADV+AEAR RIGEE+P PA
Sbjct  62  ADVMAEARERIGEESPTPA  80


>gi|240172498|ref|ZP_04751157.1| hypothetical protein MkanA1_24500 [Mycobacterium kansasii ATCC 
12478]
Length=93

 Score = 95.5 bits (236),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 47/79 (60%), Positives = 60/79 (76%), Gaps = 0/79 (0%)

Query  6   LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV  65
           +  KAA  V+TGL GV+AYE L+K    AP+ + +V+  E GLRGTR+AE AAESARL +
Sbjct  6   IFAKAATTVITGLAGVTAYEVLKKVAAKAPLHQTAVSAAELGLRGTRKAEEAAESARLKI  65

Query  66  ADVVAEARGRIGEEAPLPA  84
           +DV+AEAR R+GEEAP PA
Sbjct  66  SDVMAEARERVGEEAPTPA  84


>gi|296164259|ref|ZP_06846848.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295900385|gb|EFG79802.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=93

 Score = 94.7 bits (234),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 58/83 (70%), Positives = 67/83 (81%), Gaps = 0/83 (0%)

Query  1   VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES  60
           +V H LL KA   V TGLVGVSAYE +R+A+G AP+ RA+VT  EWGLRGTRRAE AAE+
Sbjct  1   MVAHGLLAKATRTVFTGLVGVSAYEVVRRAVGNAPVHRAAVTATEWGLRGTRRAEVAAEA  60

Query  61  ARLTVADVVAEARGRIGEEAPLP  83
           ARL VADVVAEAR RIG++A LP
Sbjct  61  ARLKVADVVAEARDRIGDDASLP  83


>gi|15827316|ref|NP_301579.1| hypothetical protein ML0748 [Mycobacterium leprae TN]
 gi|221229794|ref|YP_002503210.1| hypothetical protein MLBr_00748 [Mycobacterium leprae Br4923]
 gi|13092865|emb|CAC30257.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932901|emb|CAR70842.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=92

 Score = 93.2 bits (230),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 48/85 (57%), Positives = 64/85 (76%), Gaps = 0/85 (0%)

Query  6   LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV  65
           LL KAA  V+TGL GV+AYE LRKA+   P+ + +V+ +E GLRG+R+AE AAESARL +
Sbjct  5   LLAKAATMVITGLTGVTAYEMLRKAVTKVPLHQIAVSALELGLRGSRKAEEAAESARLKL  64

Query  66  ADVVAEARGRIGEEAPLPAGARVDE  90
           ADV+AEAR RIG+E   PA + + +
Sbjct  65  ADVMAEARERIGKETTAPAVSDIHQ  89


>gi|183982159|ref|YP_001850450.1| hypothetical protein MMAR_2146 [Mycobacterium marinum M]
 gi|183175485|gb|ACC40595.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=93

 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 59/90 (66%), Positives = 68/90 (76%), Gaps = 0/90 (0%)

Query  1   VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES  60
           ++ H LL KA   V+TG+VGVSAYE LRKALG+AP+ RA+V   E GLRGTR AE  AES
Sbjct  1   MIVHGLLAKAGATVVTGVVGVSAYELLRKALGSAPVHRAAVATTEVGLRGTRGAEKVAES  60

Query  61  ARLTVADVVAEARGRIGEEAPLPAGARVDE  90
           ARL V+DVVAEAR RIGEEAP PA    D+
Sbjct  61  ARLKVSDVVAEARERIGEEAPPPAIGNHDQ  90


>gi|226359852|ref|YP_002777630.1| hypothetical protein ROP_04380 [Rhodococcus opacus B4]
 gi|226238337|dbj|BAH48685.1| hypothetical protein [Rhodococcus opacus B4]
Length=94

 Score = 90.5 bits (223),  Expect = 8e-17, Method: Compositional matrix adjust.
 Identities = 48/74 (65%), Positives = 55/74 (75%), Gaps = 0/74 (0%)

Query  4   HELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARL  63
           H LLVKAA  V+TG VGV+AY   RK +  AP+  A+VT   WGLRG R+AE  AESARL
Sbjct  4   HILLVKAASTVVTGAVGVAAYNAARKVVAKAPLHEAAVTATAWGLRGARKAEEGAESARL  63

Query  64  TVADVVAEARGRIG  77
            V+DVVAEARGRIG
Sbjct  64  KVSDVVAEARGRIG  77


>gi|296168935|ref|ZP_06850604.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896404|gb|EFG76057.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=99

 Score = 89.4 bits (220),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 46/84 (55%), Positives = 61/84 (73%), Gaps = 0/84 (0%)

Query  1   VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES  60
           V+ H    KAA  + TG+ G +AY+ +RKA+  AP+   +V+  E GLRGTR+AE AAES
Sbjct  7   VIAHGAFGKAAAWLATGVAGAAAYDLVRKAVAKAPLHETAVSAAELGLRGTRKAEEAAES  66

Query  61  ARLTVADVVAEARGRIGEEAPLPA  84
           ARL ++DV+AEAR R+GEEAP PA
Sbjct  67  ARLKISDVMAEARERVGEEAPTPA  90


>gi|118467605|ref|YP_890281.1| hypothetical protein MSMEG_6059 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118168892|gb|ABK69788.1| conserved hypothetical protein [Mycobacterium smegmatis str. 
MC2 155]
Length=94

 Score = 88.2 bits (217),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 54/84 (65%), Positives = 62/84 (74%), Gaps = 0/84 (0%)

Query  1   VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES  60
           +V H LLVKAA  V+TG VGV+AYE LRKA+  AP+R A+V      LRG R+AE  AES
Sbjct  1   MVWHGLLVKAATTVVTGAVGVAAYEGLRKAVAKAPVREAAVATTALALRGARKAEVGAES  60

Query  61  ARLTVADVVAEARGRIGEEAPLPA  84
           ARL VADV+AEAR RIGEE P PA
Sbjct  61  ARLKVADVMAEARERIGEEVPPPA  84


>gi|296164289|ref|ZP_06846875.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295900351|gb|EFG79771.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=113

 Score = 87.4 bits (215),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 53/87 (61%), Positives = 62/87 (72%), Gaps = 5/87 (5%)

Query  1    VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAE----A  56
            +V H  LVKAA  VLTG+VGV+AYE L K  G AP+R+A+V    WG+R  R AE    A
Sbjct  18   MVLHGFLVKAAPTVLTGVVGVAAYEALCKVAGKAPLRKATVIATAWGIRVVREAERTAGA  77

Query  57   AAESARLTVADVVAEARGRIGEEA-PL  82
            +AE ARLTVADVVAEA+ R GEEA PL
Sbjct  78   SAEQARLTVADVVAEAKERAGEEAGPL  104


>gi|118618085|ref|YP_906417.1| hypothetical protein MUL_2615 [Mycobacterium ulcerans Agy99]
 gi|183981294|ref|YP_001849585.1| hypothetical protein MMAR_1272 [Mycobacterium marinum M]
 gi|118570195|gb|ABL04946.1| conserved protein [Mycobacterium ulcerans Agy99]
 gi|183174620|gb|ACC39730.1| conserved protein [Mycobacterium marinum M]
Length=92

 Score = 87.0 bits (214),  Expect = 8e-16, Method: Compositional matrix adjust.
 Identities = 45/84 (54%), Positives = 61/84 (73%), Gaps = 0/84 (0%)

Query  1   VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES  60
           +V + L  K    V+ G+VG +AY+ +RKA   AP+R+ +V+  E  LRGTR+AE AAES
Sbjct  1   MVAYGLFAKLGTLVVHGVVGAAAYDVVRKAAKKAPLRQTAVSAAELSLRGTRKAEEAAES  60

Query  61  ARLTVADVVAEARGRIGEEAPLPA  84
           ARL ++DV++EAR RIGEEAP PA
Sbjct  61  ARLKISDVMSEARERIGEEAPTPA  84


>gi|325000600|ref|ZP_08121712.1| hypothetical protein PseP1_17612 [Pseudonocardia sp. P1]
Length=88

 Score = 82.0 bits (201),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 43/78 (56%), Positives = 55/78 (71%), Gaps = 0/78 (0%)

Query  6   LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV  65
           ++ KAAG V +GL G  AY+ +++   +  +R A+VTV  WGLRG R AE  AE ARL  
Sbjct  1   MVGKAAGLVASGLAGAVAYDGVKRVARSGAVREAAVTVTGWGLRGARAAETGAEKARLAT  60

Query  66  ADVVAEARGRIGEEAPLP  83
           AD+V+EARGRIGEEAP P
Sbjct  61  ADIVSEARGRIGEEAPAP  78


>gi|240171334|ref|ZP_04749993.1| hypothetical protein MkanA1_18626 [Mycobacterium kansasii ATCC 
12478]
Length=99

 Score = 76.6 bits (187),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 41/83 (50%), Positives = 56/83 (68%), Gaps = 4/83 (4%)

Query  4   HELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRG----TRRAEAAAE  59
           H LL K+   ++TG+VG +AYE LRK     P+R A+V    WGLRG     R+A+ ++E
Sbjct  5   HGLLAKSVPTLVTGVVGAAAYEALRKTAVKVPLREATVATTAWGLRGLRTAERKAQQSSE  64

Query  60  SARLTVADVVAEARGRIGEEAPL  82
            ARLT+ADV+AEA+ RIGE+  L
Sbjct  65  QARLTLADVIAEAKERIGEDVSL  87


>gi|340625980|ref|YP_004744432.1| hypothetical protein MCAN_09721 [Mycobacterium canettii CIPT 
140010059]
 gi|340004170|emb|CCC43309.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=98

 Score = 75.5 bits (184),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 48/94 (52%), Positives = 59/94 (63%), Gaps = 4/94 (4%)

Query  1   VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAE----A  56
           +V H  L KA   V+TG VGV+AYE LRK +  AP+R A+V+V  WG+R  R AE     
Sbjct  1   MVWHGFLAKAVPTVVTGAVGVAAYEALRKVVVKAPLRAATVSVAAWGIRLAREAERKAGE  60

Query  57  AAESARLTVADVVAEARGRIGEEAPLPAGARVDE  90
           +AE ARL  ADV+AEA  R GEE P  A A  D+
Sbjct  61  SAEQARLMFADVLAEASERAGEEVPPLAVAGSDD  94


>gi|15840394|ref|NP_335431.1| hypothetical protein MT0996 [Mycobacterium tuberculosis CDC1551]
 gi|13880562|gb|AAK45245.1| hypothetical protein MT0996 [Mycobacterium tuberculosis CDC1551]
Length=118

 Score = 75.5 bits (184),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 48/94 (52%), Positives = 59/94 (63%), Gaps = 4/94 (4%)

Query  1    VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAE----A  56
            +V H  L KA   V+TG VGV+AYE LRK +  AP+R A+V+V  WG+R  R AE     
Sbjct  21   MVWHGFLAKAVPTVVTGAVGVAAYEALRKMVVKAPLRAATVSVAAWGIRLAREAERKAGE  80

Query  57   AAESARLTVADVVAEARGRIGEEAPLPAGARVDE  90
            +AE ARL  ADV+AEA  R GEE P  A A  D+
Sbjct  81   SAEQARLMFADVLAEASERAGEEVPPLAVAGSDD  114


>gi|15608108|ref|NP_215483.1| hypothetical protein Rv0968 [Mycobacterium tuberculosis H37Rv]
 gi|31792157|ref|NP_854650.1| hypothetical protein Mb0993 [Mycobacterium bovis AF2122/97]
 gi|121636894|ref|YP_977117.1| hypothetical protein BCG_1022 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 68 more sequence titles
 Length=98

 Score = 75.5 bits (184),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 48/94 (52%), Positives = 59/94 (63%), Gaps = 4/94 (4%)

Query  1   VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAE----A  56
           +V H  L KA   V+TG VGV+AYE LRK +  AP+R A+V+V  WG+R  R AE     
Sbjct  1   MVWHGFLAKAVPTVVTGAVGVAAYEALRKMVVKAPLRAATVSVAAWGIRLAREAERKAGE  60

Query  57  AAESARLTVADVVAEARGRIGEEAPLPAGARVDE  90
           +AE ARL  ADV+AEA  R GEE P  A A  D+
Sbjct  61  SAEQARLMFADVLAEASERAGEEVPPLAVAGSDD  94


>gi|183981452|ref|YP_001849743.1| hypothetical protein MMAR_1430 [Mycobacterium marinum M]
 gi|183174778|gb|ACC39888.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=98

 Score = 70.1 bits (170),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 50/82 (61%), Positives = 57/82 (70%), Gaps = 5/82 (6%)

Query  6   LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAE----AAAESA  61
            +VK A AV TG+VGV AYE LRK L  AP+R+ASV    WGLR  R AE     +AE A
Sbjct  6   FVVKGAHAVGTGVVGVVAYEALRKTLAKAPLRKASVATTAWGLRVVREAERKAGQSAEQA  65

Query  62  RLTVADVVAEARGRIGEE-APL  82
           RLTVADV+AEA+ R GEE APL
Sbjct  66  RLTVADVMAEAKERAGEEVAPL  87


>gi|296164642|ref|ZP_06847208.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899950|gb|EFG79390.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=90

 Score = 68.6 bits (166),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 49/93 (53%), Positives = 59/93 (64%), Gaps = 10/93 (10%)

Query  4   HELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEA----AAE  59
           H  + KA   V+TG+VGV+AYE L KA    P R+A+V    WG+R  R AE     +AE
Sbjct  2   HGFVAKAMPTVMTGVVGVAAYEALAKA----PWRKATVVATAWGIRVAREAERKAGRSAE  57

Query  60  SARLTVADVVAEARGRIGEE-APLP-AGARVDE  90
            ARLTVADV+AEAR R G E APL  AG+  DE
Sbjct  58  QARLTVADVMAEARERAGSEAAPLTVAGSGEDE  90


>gi|333919412|ref|YP_004492993.1| hypothetical protein AS9A_1744 [Amycolicicoccus subflavus DQS3-9A1]
 gi|333481633|gb|AEF40193.1| hypothetical protein AS9A_1744 [Amycolicicoccus subflavus DQS3-9A1]
Length=94

 Score = 60.8 bits (146),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 42/78 (54%), Positives = 53/78 (68%), Gaps = 0/78 (0%)

Query  6   LLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTV  65
           LL KA G V+TG+VGV+AY   R      P R  +V+    G++G R+AE  AE+ RLT 
Sbjct  6   LLGKALGTVVTGVVGVAAYNGARWVAKKTPTREIAVSATALGIKGARKAEEGAENVRLTA  65

Query  66  ADVVAEARGRIGEEAPLP  83
           AD+VAEARGR+GEEAP P
Sbjct  66  ADIVAEARGRVGEEAPPP  83


>gi|296165052|ref|ZP_06847606.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899584|gb|EFG79036.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=139

 Score = 59.7 bits (143),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 43/80 (54%), Positives = 55/80 (69%), Gaps = 4/80 (5%)

Query  4    HELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESA--  61
            H  L+KAA  V+TG+VGV+AYE +R A+   P+R A+V V  WG+R  R A+  AE+   
Sbjct  45   HGFLMKAAPTVVTGVVGVAAYEAVRTAVAKVPLRTATVAVTAWGIRAAREAQRTAETNTE  104

Query  62   --RLTVADVVAEARGRIGEE  79
              RLTVADVVAEAR R GE+
Sbjct  105  QIRLTVADVVAEARERAGED  124


>gi|258653982|ref|YP_003203138.1| hypothetical protein Namu_3853 [Nakamurella multipartita DSM 
44233]
 gi|258557207|gb|ACV80149.1| hypothetical protein Namu_3853 [Nakamurella multipartita DSM 
44233]
Length=94

 Score = 53.9 bits (128),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 36/84 (43%), Positives = 52/84 (62%), Gaps = 0/84 (0%)

Query  1   VVTHELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES  60
           +VT  L  +AAG +++G+ G    + L++      + +A+V V    LRG RR EA AE+
Sbjct  1   MVTGHLAARAAGMLISGVAGAIVVDRLKQRSTGRGLNQAAVAVTALALRGKRRVEAGAEN  60

Query  61  ARLTVADVVAEARGRIGEEAPLPA  84
            RL   DVVA+AR +IGE+AP PA
Sbjct  61  LRLGAGDVVAQAREKIGEQAPPPA  84


>gi|183982550|ref|YP_001850841.1| hypothetical protein MMAR_2537 [Mycobacterium marinum M]
 gi|183175876|gb|ACC40986.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=101

 Score = 53.5 bits (127),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 37/79 (47%), Positives = 47/79 (60%), Gaps = 8/79 (10%)

Query  9   KAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTR----RAEAAAESARLT  64
           KA   V+TG VGV+AYE   +     P R+A+V     GLR  R    + + AAE A+L 
Sbjct  9   KAVHTVVTGAVGVAAYEVFVRV----PWRKATVGATALGLRAGRTTGRKTKEAAERAQLA  64

Query  65  VADVVAEARGRIGEEAPLP  83
           VADV+AEA  RIGE+ P P
Sbjct  65  VADVLAEAAERIGEQVPRP  83


>gi|183984843|ref|YP_001853134.1| hypothetical protein MMAR_4875 [Mycobacterium marinum M]
 gi|183178169|gb|ACC43279.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=102

 Score = 47.4 bits (111),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 50/86 (59%), Gaps = 9/86 (10%)

Query  4   HELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAE----AAAE  59
           H L  KA  +V+TG+VGV+ YE    AL  AP R A+VT   WGLR  R  E     A E
Sbjct  5   HGLWTKAVPSVVTGVVGVATYE----ALAKAPWRSATVTATVWGLRTARTTERKTKQATE  60

Query  60  SARLTVADVVAEARGRIGEE-APLPA  84
             RL  ADV+AEA  R+G E AP PA
Sbjct  61  RVRLAAADVLAEAVERVGAEVAPPPA  86


>gi|118616275|ref|YP_904607.1| hypothetical protein MUL_0424 [Mycobacterium ulcerans Agy99]
 gi|118568385|gb|ABL03136.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=102

 Score = 40.4 bits (93),  Expect = 0.087, Method: Compositional matrix adjust.
 Identities = 40/86 (47%), Positives = 48/86 (56%), Gaps = 8/86 (9%)

Query  4   HELLVKAAGAVLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRA----EAAAE  59
           H L  KA  +V+TG+VGV+ YE    AL  AP R A+VT   WGLR  R      + A E
Sbjct  5   HGLWTKAVPSVVTGVVGVATYE----ALAKAPWRSATVTATAWGLRTARTTERRTKQATE  60

Query  60  SARLTVADVVAEARGRIGEEAPLPAG  85
             RL  ADV+AEA  R+G E   PA 
Sbjct  61  RVRLAAADVLAEAVERVGAEVAPPAA  86


>gi|289749496|ref|ZP_06508874.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289690083|gb|EFD57512.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=54

 Score = 39.3 bits (90),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 24/47 (52%), Positives = 32/47 (69%), Gaps = 4/47 (8%)

Query  14  VLTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAES  60
           ++TG VGV+AYE LRK +  AP+R A+V+V     RG RRA  +A S
Sbjct  1   MVTGAVGVAAYEALRKMVVKAPLRAATVSVD----RGARRARLSANS  43


>gi|152964259|ref|YP_001360043.1| hypothetical protein Krad_0289 [Kineococcus radiotolerans SRS30216]
 gi|151358776|gb|ABS01779.1| hypothetical protein Krad_0289 [Kineococcus radiotolerans SRS30216]
Length=102

 Score = 38.1 bits (87),  Expect = 0.40, Method: Compositional matrix adjust.
 Identities = 22/69 (32%), Positives = 35/69 (51%), Gaps = 0/69 (0%)

Query  15  LTGLVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTVADVVAEARG  74
           LT +      + L    G   +RR +V   + G++ +R AE   E  RL   D+VA+A  
Sbjct  23  LTAVASAGIVKALGDGRGGNALRRLAVNGAKAGIKASRAAETGVERLRLGTGDIVAQAYD  82

Query  75  RIGEEAPLP  83
            +GE+ P+P
Sbjct  83  ELGEQVPVP  91


>gi|296164386|ref|ZP_06846962.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295900266|gb|EFG79696.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=103

 Score = 35.0 bits (79),  Expect = 3.9, Method: Compositional matrix adjust.
 Identities = 22/48 (46%), Positives = 28/48 (59%), Gaps = 4/48 (8%)

Query  35  PIRRASVTVMEWGLRGTR----RAEAAAESARLTVADVVAEARGRIGE  78
           P R+ +V     GL+ TR    + + AAE ARL  ADV AEA  R+GE
Sbjct  33  PWRKVTVGATAVGLQATRTTARKTKQAAEKARLATADVFAEAADRLGE  80


>gi|78355546|ref|YP_386995.1| hypothetical protein Dde_0499 [Desulfovibrio alaskensis G20]
 gi|78217951|gb|ABB37300.1| hypothetical protein Dde_0499 [Desulfovibrio alaskensis G20]
Length=82

 Score = 33.5 bits (75),  Expect = 9.6, Method: Compositional matrix adjust.
 Identities = 23/66 (35%), Positives = 37/66 (57%), Gaps = 7/66 (10%)

Query  18  LVGVSAYETLRKALGTAPIRRASVTVMEWGLRGTRRAEAAAESARLTVADVVAEARGRIG  77
           ++G++AY   +  L    +R+A+V V+  G++ +  AE   + AR  V D+V EAR    
Sbjct  16  VIGLAAYAVYKSGL----LRKAAVGVIRGGVKASAWAEDRYKCARDNVKDMVEEAR---K  68

Query  78  EEAPLP  83
           E AP P
Sbjct  69  EPAPCP  74



Lambda     K      H
   0.316    0.130    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129182109240


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40