BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv1996
Length=317
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609133|ref|NP_216512.1| hypothetical protein Rv1996 [Mycoba... 630 7e-179
gi|340627007|ref|YP_004745459.1| hypothetical protein MCAN_20161... 629 1e-178
gi|15841478|ref|NP_336515.1| universal stress protein [Mycobacte... 629 1e-178
gi|289754102|ref|ZP_06513480.1| conserved hypothetical protein [... 628 5e-178
gi|306784764|ref|ZP_07423086.1| hypothetical protein TMCG_00084 ... 627 7e-178
gi|289443487|ref|ZP_06433231.1| conserved hypothetical protein [... 625 4e-177
gi|339294921|gb|AEJ47032.1| hypothetical protein CCDC5079_1842 [... 516 1e-144
gi|289447613|ref|ZP_06437357.1| conserved hypothetical protein [... 501 8e-140
gi|183985380|ref|YP_001853671.1| hypothetical protein MMAR_5410 ... 373 2e-101
gi|118620046|ref|YP_908378.1| hypothetical protein MUL_5033 [Myc... 370 1e-100
gi|240168804|ref|ZP_04747463.1| hypothetical protein MkanA1_0579... 333 3e-89
gi|240170461|ref|ZP_04749120.1| hypothetical protein MkanA1_1420... 280 2e-73
gi|183983460|ref|YP_001851751.1| hypothetical protein MMAR_3477 ... 276 2e-72
gi|118617760|ref|YP_906092.1| hypothetical protein MUL_2234 [Myc... 273 3e-71
gi|183982995|ref|YP_001851286.1| hypothetical protein MMAR_2993 ... 272 4e-71
gi|254775163|ref|ZP_05216679.1| hypothetical protein MaviaA2_109... 272 5e-71
gi|41407839|ref|NP_960675.1| hypothetical protein MAP1741c [Myco... 271 9e-71
gi|118466349|ref|YP_881699.1| universal stress protein family pr... 267 1e-69
gi|342859710|ref|ZP_08716363.1| hypothetical protein MCOL_12553 ... 263 3e-68
gi|240171511|ref|ZP_04750170.1| hypothetical protein MkanA1_1951... 262 4e-68
gi|15609142|ref|NP_216521.1| hypothetical protein Rv2005c [Mycob... 258 8e-67
gi|340627015|ref|YP_004745467.1| hypothetical protein MCAN_20251... 258 8e-67
gi|296169101|ref|ZP_06850760.1| universal stress protein family ... 255 5e-66
gi|145224961|ref|YP_001135639.1| UspA domain-containing protein ... 254 1e-65
gi|340627037|ref|YP_004745489.1| hypothetical protein MCAN_20491... 251 8e-65
gi|240170463|ref|ZP_04749122.1| hypothetical protein MkanA1_1421... 246 4e-63
gi|108798076|ref|YP_638273.1| hypothetical protein Mmcs_1104 [My... 239 3e-61
gi|15609163|ref|NP_216542.1| hypothetical protein Rv2026c [Mycob... 237 2e-60
gi|240170642|ref|ZP_04749301.1| hypothetical protein MkanA1_1511... 231 1e-58
gi|315445921|ref|YP_004078800.1| universal stress protein UspA-l... 230 2e-58
gi|118469207|ref|YP_888229.1| universal stress protein family pr... 230 2e-58
gi|289754743|ref|ZP_06514121.1| universal stress protein family ... 229 3e-58
gi|15609760|ref|NP_217139.1| hypothetical protein Rv2623 [Mycoba... 229 4e-58
gi|118617761|ref|YP_906093.1| hypothetical protein MUL_2236 [Myc... 229 4e-58
gi|340627643|ref|YP_004746095.1| hypothetical protein MCAN_26681... 229 4e-58
gi|323719497|gb|EGB28624.1| hypothetical protein TMMG_01271 [Myc... 228 9e-58
gi|145225568|ref|YP_001136246.1| UspA domain-containing protein ... 228 1e-57
gi|225698003|pdb|3CIS|A Chain A, The Crystal Structure Of Rv2623... 226 4e-57
gi|108800587|ref|YP_640784.1| hypothetical protein Mmcs_3621 [My... 225 6e-57
gi|240172801|ref|ZP_04751460.1| hypothetical protein MkanA1_2604... 225 7e-57
gi|126436203|ref|YP_001071894.1| UspA domain-containing protein ... 225 8e-57
gi|108798069|ref|YP_638266.1| hypothetical protein Mmcs_1097 [My... 224 2e-56
gi|240170451|ref|ZP_04749110.1| hypothetical protein MkanA1_1415... 224 2e-56
gi|254775151|ref|ZP_05216667.1| hypothetical protein MaviaA2_108... 224 2e-56
gi|162329900|pdb|2JAX|A Chain A, Universal Stress Protein Rv2623... 223 3e-56
gi|120402959|ref|YP_952788.1| UspA domain-containing protein [My... 223 3e-56
gi|296169639|ref|ZP_06851257.1| universal stress protein family ... 223 4e-56
gi|126433730|ref|YP_001069421.1| UspA domain-containing protein ... 222 5e-56
gi|41407852|ref|NP_960688.1| hypothetical protein MAP1754c [Myco... 222 7e-56
gi|296169051|ref|ZP_06850712.1| universal stress protein [Mycoba... 221 8e-56
>gi|15609133|ref|NP_216512.1| hypothetical protein Rv1996 [Mycobacterium tuberculosis H37Rv]
gi|31793176|ref|NP_855669.1| hypothetical protein Mb2019 [Mycobacterium bovis AF2122/97]
gi|121637880|ref|YP_978103.1| hypothetical protein BCG_2013 [Mycobacterium bovis BCG str. Pasteur
1173P2]
59 more sequence titles
Length=317
Score = 630 bits (1626), Expect = 7e-179, Method: Compositional matrix adjust.
Identities = 317/317 (100%), Positives = 317/317 (100%), Gaps = 0/317 (0%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR 60
MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR
Sbjct 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR 60
Query 61 FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR 120
FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR
Sbjct 61 FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR 120
Query 121 QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP 180
QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP
Sbjct 121 QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP 180
Query 181 TSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS 240
TSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS
Sbjct 181 TSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS 240
Query 241 GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG 300
GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG
Sbjct 241 GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG 300
Query 301 QAPVIVARIPQDPAVPA 317
QAPVIVARIPQDPAVPA
Sbjct 301 QAPVIVARIPQDPAVPA 317
>gi|340627007|ref|YP_004745459.1| hypothetical protein MCAN_20161 [Mycobacterium canettii CIPT
140010059]
gi|340005197|emb|CCC44348.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=317
Score = 629 bits (1623), Expect = 1e-178, Method: Compositional matrix adjust.
Identities = 316/317 (99%), Positives = 316/317 (99%), Gaps = 0/317 (0%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR 60
MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR
Sbjct 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR 60
Query 61 FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR 120
FQEAQKREIVEHSYLV QAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR
Sbjct 61 FQEAQKREIVEHSYLVTQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR 120
Query 121 QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP 180
QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP
Sbjct 121 QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP 180
Query 181 TSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS 240
TSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS
Sbjct 181 TSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS 240
Query 241 GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG 300
GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG
Sbjct 241 GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG 300
Query 301 QAPVIVARIPQDPAVPA 317
QAPVIVARIPQDPAVPA
Sbjct 301 QAPVIVARIPQDPAVPA 317
>gi|15841478|ref|NP_336515.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
gi|13881719|gb|AAK46329.1| universal stress protein family [Mycobacterium tuberculosis CDC1551]
gi|323719487|gb|EGB28614.1| hypothetical protein TMMG_01261 [Mycobacterium tuberculosis CDC1551A]
Length=317
Score = 629 bits (1623), Expect = 1e-178, Method: Compositional matrix adjust.
Identities = 316/317 (99%), Positives = 316/317 (99%), Gaps = 0/317 (0%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR 60
MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR
Sbjct 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR 60
Query 61 FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR 120
FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTL NISR
Sbjct 61 FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLTNISR 120
Query 121 QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP 180
QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP
Sbjct 121 QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP 180
Query 181 TSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS 240
TSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS
Sbjct 181 TSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS 240
Query 241 GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG 300
GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG
Sbjct 241 GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG 300
Query 301 QAPVIVARIPQDPAVPA 317
QAPVIVARIPQDPAVPA
Sbjct 301 QAPVIVARIPQDPAVPA 317
>gi|289754102|ref|ZP_06513480.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289694689|gb|EFD62118.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=317
Score = 628 bits (1619), Expect = 5e-178, Method: Compositional matrix adjust.
Identities = 316/317 (99%), Positives = 316/317 (99%), Gaps = 0/317 (0%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR 60
MSAQQTNLGIVVGVDGS CSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR
Sbjct 1 MSAQQTNLGIVVGVDGSSCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR 60
Query 61 FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR 120
FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR
Sbjct 61 FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR 120
Query 121 QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP 180
QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP
Sbjct 121 QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP 180
Query 181 TSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS 240
TSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS
Sbjct 181 TSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS 240
Query 241 GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG 300
GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG
Sbjct 241 GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG 300
Query 301 QAPVIVARIPQDPAVPA 317
QAPVIVARIPQDPAVPA
Sbjct 301 QAPVIVARIPQDPAVPA 317
>gi|306784764|ref|ZP_07423086.1| hypothetical protein TMCG_00084 [Mycobacterium tuberculosis SUMu003]
gi|308330496|gb|EFP19347.1| hypothetical protein TMCG_00084 [Mycobacterium tuberculosis SUMu003]
Length=317
Score = 627 bits (1617), Expect = 7e-178, Method: Compositional matrix adjust.
Identities = 316/317 (99%), Positives = 316/317 (99%), Gaps = 0/317 (0%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR 60
MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR
Sbjct 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR 60
Query 61 FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR 120
FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR
Sbjct 61 FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR 120
Query 121 QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP 180
QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP
Sbjct 121 QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP 180
Query 181 TSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS 240
T GLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS
Sbjct 181 TLGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS 240
Query 241 GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG 300
GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG
Sbjct 241 GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG 300
Query 301 QAPVIVARIPQDPAVPA 317
QAPVIVARIPQDPAVPA
Sbjct 301 QAPVIVARIPQDPAVPA 317
>gi|289443487|ref|ZP_06433231.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289570096|ref|ZP_06450323.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289750578|ref|ZP_06509956.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289416406|gb|EFD13646.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289543850|gb|EFD47498.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289691165|gb|EFD58594.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=317
Score = 625 bits (1611), Expect = 4e-177, Method: Compositional matrix adjust.
Identities = 315/317 (99%), Positives = 315/317 (99%), Gaps = 0/317 (0%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR 60
MSAQQTNLGIVVGVDGS CSHTAVEWAARDAQMRNVALRVVQVVPPVITAPE WAFEYSR
Sbjct 1 MSAQQTNLGIVVGVDGSSCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPERWAFEYSR 60
Query 61 FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR 120
FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR
Sbjct 61 FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR 120
Query 121 QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP 180
QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP
Sbjct 121 QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGSP 180
Query 181 TSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS 240
TSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS
Sbjct 181 TSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS 240
Query 241 GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG 300
GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG
Sbjct 241 GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG 300
Query 301 QAPVIVARIPQDPAVPA 317
QAPVIVARIPQDPAVPA
Sbjct 301 QAPVIVARIPQDPAVPA 317
>gi|339294921|gb|AEJ47032.1| hypothetical protein CCDC5079_1842 [Mycobacterium tuberculosis
CCDC5079]
Length=285
Score = 516 bits (1330), Expect = 1e-144, Method: Compositional matrix adjust.
Identities = 285/285 (100%), Positives = 285/285 (100%), Gaps = 0/285 (0%)
Query 33 MRNVALRVVQVVPPVITAPEGWAFEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALE 92
MRNVALRVVQVVPPVITAPEGWAFEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALE
Sbjct 1 MRNVALRVVQVVPPVITAPEGWAFEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALE 60
Query 93 ASSSGRAAQITGEVLHGQIVPTLANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAH 152
ASSSGRAAQITGEVLHGQIVPTLANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAH
Sbjct 61 ASSSGRAAQITGEVLHGQIVPTLANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAH 120
Query 153 GPVAVIPEEPRPARPPHAPVVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPL 212
GPVAVIPEEPRPARPPHAPVVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPL
Sbjct 121 GPVAVIPEEPRPARPPHAPVVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPL 180
Query 213 DFPRLNWAPIEWRNLEDEQEKMLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQ 272
DFPRLNWAPIEWRNLEDEQEKMLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQ
Sbjct 181 DFPRLNWAPIEWRNLEDEQEKMLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQ 240
Query 273 LVVVGSHGRGGFPGMHLGSVSRAVVNSGQAPVIVARIPQDPAVPA 317
LVVVGSHGRGGFPGMHLGSVSRAVVNSGQAPVIVARIPQDPAVPA
Sbjct 241 LVVVGSHGRGGFPGMHLGSVSRAVVNSGQAPVIVARIPQDPAVPA 285
Score = 38.9 bits (89), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 42/159 (27%), Positives = 66/159 (42%), Gaps = 23/159 (14%)
Query 10 IVVGVDGSPCSHTAVEWAARDAQMRN---VALRVVQVVPPVITAPEGWA-FEYSRFQEAQ 65
+VVG+DGSP S A E A +A R VAL + P+ WA E+ ++ Q
Sbjct 140 VVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQ 199
Query 66 KREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISRQVAMV 125
++ + L + + + P L +++ +V
Sbjct 200 EKMLARR--LSGWQDRYPDVVVHKVVVCDRPA---------------PRLLELAQTAQLV 242
Query 126 VLGYRGQGAVAGALLGSVSSSLVRHAHGPVAV--IPEEP 162
V+G G+G G LGSVS ++V PV V IP++P
Sbjct 243 VVGSHGRGGFPGMHLGSVSRAVVNSGQAPVIVARIPQDP 281
>gi|289447613|ref|ZP_06437357.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289420571|gb|EFD17772.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=278
Score = 501 bits (1289), Expect = 8e-140, Method: Compositional matrix adjust.
Identities = 277/278 (99%), Positives = 278/278 (100%), Gaps = 0/278 (0%)
Query 40 VVQVVPPVITAPEGWAFEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRA 99
+VQVVPPVITAPEGWAFEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRA
Sbjct 1 MVQVVPPVITAPEGWAFEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRA 60
Query 100 AQITGEVLHGQIVPTLANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIP 159
AQITGEVLHGQIVPTLANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIP
Sbjct 61 AQITGEVLHGQIVPTLANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIP 120
Query 160 EEPRPARPPHAPVVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNW 219
EEPRPARPPHAPVVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNW
Sbjct 121 EEPRPARPPHAPVVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNW 180
Query 220 APIEWRNLEDEQEKMLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSH 279
APIEWRNLEDEQEKMLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSH
Sbjct 181 APIEWRNLEDEQEKMLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSH 240
Query 280 GRGGFPGMHLGSVSRAVVNSGQAPVIVARIPQDPAVPA 317
GRGGFPGMHLGSVSRAVVNSGQAPVIVARIPQDPAVPA
Sbjct 241 GRGGFPGMHLGSVSRAVVNSGQAPVIVARIPQDPAVPA 278
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/159 (27%), Positives = 66/159 (42%), Gaps = 23/159 (14%)
Query 10 IVVGVDGSPCSHTAVEWAARDAQMRN---VALRVVQVVPPVITAPEGWA-FEYSRFQEAQ 65
+VVG+DGSP S A E A +A R VAL + P+ WA E+ ++ Q
Sbjct 133 VVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQ 192
Query 66 KREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISRQVAMV 125
++ + L + + + P L +++ +V
Sbjct 193 EKMLARR--LSGWQDRYPDVVVHKVVVCDRPA---------------PRLLELAQTAQLV 235
Query 126 VLGYRGQGAVAGALLGSVSSSLVRHAHGPVAV--IPEEP 162
V+G G+G G LGSVS ++V PV V IP++P
Sbjct 236 VVGSHGRGGFPGMHLGSVSRAVVNSGQAPVIVARIPQDP 274
>gi|183985380|ref|YP_001853671.1| hypothetical protein MMAR_5410 [Mycobacterium marinum M]
gi|183178706|gb|ACC43816.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=306
Score = 373 bits (957), Expect = 2e-101, Method: Compositional matrix adjust.
Identities = 201/318 (64%), Positives = 240/318 (76%), Gaps = 19/318 (5%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWA----- 55
MS + T+ IVVGVDGSP S AVEWAARDA+MRNV L+VV V P++T GWA
Sbjct 1 MSTESTSPAIVVGVDGSPASTLAVEWAARDAEMRNVPLKVVHVFAPMVTPANGWADVAMP 60
Query 56 FEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTL 115
+Y+R++E Q AHQIV+QAH VA++A++ GRAA +T EV + IVP +
Sbjct 61 ADYARWREDQ-------------AHQIVQQAHAVAVDAAAPGRAAHVTSEVRYAAIVPAM 107
Query 116 ANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI-PEEPRPARPPHAPVVV 174
+S+Q MVV+G RGQG VA ALLGSVSS L HAH PVA+I +E P R APV+V
Sbjct 108 VELSQQAEMVVVGCRGQGGVASALLGSVSSGLAHHAHCPVAIIHDDEALPPRSAQAPVLV 167
Query 175 GIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKM 234
G+DGSPTS LA EIAFDEASRRG +LVALHAW+DMGPLDFP +NWAPIEW N++D++E++
Sbjct 168 GVDGSPTSELATEIAFDEASRRGAELVALHAWTDMGPLDFPSINWAPIEWSNIKDQEEEV 227
Query 235 LARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSR 294
LA RL GWQ+RYPDVV HKVVV DRPAPRLLE A AQLVVVGSHGRGGFPGM LGSVSR
Sbjct 228 LAERLCGWQERYPDVVTHKVVVSDRPAPRLLEHAHDAQLVVVGSHGRGGFPGMLLGSVSR 287
Query 295 AVVNSGQAPVIVARIPQD 312
AV+NS + PVI+AR P +
Sbjct 288 AVINSARIPVIIARTPPN 305
>gi|118620046|ref|YP_908378.1| hypothetical protein MUL_5033 [Mycobacterium ulcerans Agy99]
gi|118572156|gb|ABL06907.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=306
Score = 370 bits (951), Expect = 1e-100, Method: Compositional matrix adjust.
Identities = 200/318 (63%), Positives = 238/318 (75%), Gaps = 19/318 (5%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWA----- 55
MS + T+ IVVGVDGSP S AV+WAARDA+MRNV L+VV V P++ GWA
Sbjct 1 MSTESTSPAIVVGVDGSPASTLAVDWAARDAEMRNVPLKVVHVFAPMVAPANGWADVAMP 60
Query 56 FEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTL 115
+Y+R++E Q AHQIV+QAH VA++A++ GRAA +T EV + IVP +
Sbjct 61 ADYARWREDQ-------------AHQIVQQAHAVAVDAAAPGRAAHVTSEVRYAAIVPAM 107
Query 116 ANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI-PEEPRPARPPHAPVVV 174
+S Q MVV+G RGQG VA ALLGSVSS L HAH PVA+I +EP P R APV+V
Sbjct 108 VELSLQAEMVVVGCRGQGGVASALLGSVSSGLAHHAHCPVAIIHDDEPLPPRSAQAPVLV 167
Query 175 GIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKM 234
G+DGSPTS LA EI FDEASRRG +LVALHAW+DMGPLDFP +NWAPIEW N++D++E++
Sbjct 168 GVDGSPTSELATEIGFDEASRRGAELVALHAWTDMGPLDFPSINWAPIEWSNIKDQEEEV 227
Query 235 LARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSR 294
LA RL GWQ+RYPDVV HKVVV DRPAPRLLE A AQLVVVGSHGRGGFPGM LGSVSR
Sbjct 228 LAERLCGWQERYPDVVTHKVVVSDRPAPRLLEHAHDAQLVVVGSHGRGGFPGMLLGSVSR 287
Query 295 AVVNSGQAPVIVARIPQD 312
AVVNS + PVI+AR P +
Sbjct 288 AVVNSARIPVIIARTPAN 305
>gi|240168804|ref|ZP_04747463.1| hypothetical protein MkanA1_05795 [Mycobacterium kansasii ATCC
12478]
Length=273
Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 185/285 (65%), Positives = 215/285 (76%), Gaps = 20/285 (7%)
Query 33 MRNVALRVVQVVPPVITAPEGWA-----FEYSRFQEAQKREIVEHSYLVAQAHQIVEQAH 87
MRNV + +V V+ P+ T+ EGW+ Y+ +QE + REI+E QA
Sbjct 1 MRNVPIHLVHVIAPMATS-EGWSGLPIIANYADWQEERAREIIE-------------QAG 46
Query 88 KVALEASSSGRAAQITGEVLHGQIVPTLANISRQVAMVVLGYRGQGAVAGALLGSVSSSL 147
KV EA+S+ RA +T EVLH IVP L ++S+ MVV+G RG VAGALLGSVSS L
Sbjct 47 KVVAEATSTSRAPHVTSEVLHAAIVPALVDLSKSADMVVVGCRGHDGVAGALLGSVSSGL 106
Query 148 VRHAHGPVAVIPEEP-RPARPPHAPVVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAW 206
HAH PVAVI +E AR P A VVVGIDGSPTS LA +IAFDEASRRGV+LVALHAW
Sbjct 107 AHHAHCPVAVIHDEDVLEARSPQAAVVVGIDGSPTSELATDIAFDEASRRGVELVALHAW 166
Query 207 SDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLE 266
SDMGPLDFP NWAPIEWRN+ED+++++LA RLSGWQ+RYPDVVV KVVVCDRPAPRLLE
Sbjct 167 SDMGPLDFPSTNWAPIEWRNIEDQEKEVLAERLSGWQERYPDVVVRKVVVCDRPAPRLLE 226
Query 267 LAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSGQAPVIVARIPQ 311
A+TAQL+VVGSHGRGGFPGM LGSVSRAVVNS Q PVI+AR PQ
Sbjct 227 QAKTAQLLVVGSHGRGGFPGMLLGSVSRAVVNSAQIPVIIARRPQ 271
>gi|240170461|ref|ZP_04749120.1| hypothetical protein MkanA1_14205 [Mycobacterium kansasii ATCC
12478]
Length=295
Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/315 (51%), Positives = 209/315 (67%), Gaps = 29/315 (9%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVP------PVITAPEGW 54
MS + LG+VVG DGSP S+ AV WAARDA MRNV L +V VV P + P+ W
Sbjct 1 MSILEKRLGVVVGADGSPASNAAVCWAARDAAMRNVQLTIVHVVSTDVATWPPMPYPDTW 60
Query 55 AFEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPT 114
A +QE + R +I+ AHK+A E+ + R + E++ VPT
Sbjct 61 AV----WQEDEGR-------------KILAAAHKIADESVTGERKLTVKSEIVFSTPVPT 103
Query 115 LANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI-PEEPRPARPPHAPVV 173
+ +S + M+V+G G+GA+A LLGSVSSSLVR A PVA+I E+P P HAPV+
Sbjct 104 MVEMSAEAEMIVVGSSGRGALARVLLGSVSSSLVRRARCPVAIIRDEDPLMPDPLHAPVL 163
Query 174 VGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEK 233
+GIDGSP S A +AFDEASRRGV+L+ALHAWSD+ ++ P LNW+ +E E +
Sbjct 164 LGIDGSPASEAAVAVAFDEASRRGVELIALHAWSDLEVVELPGLNWSAVE-----AEAQV 218
Query 234 MLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVS 293
+LA RL+GWQ+RYPDV V +VVVCDRPA +L+E +QTAQLVVVGSHGRGG G+ LGSVS
Sbjct 219 LLAERLAGWQERYPDVTVRRVVVCDRPARQLVERSQTAQLVVVGSHGRGGVTGVLLGSVS 278
Query 294 RAVVNSGQAPVIVAR 308
A+V++ + P+IVAR
Sbjct 279 NALVHAVRMPLIVAR 293
>gi|183983460|ref|YP_001851751.1| hypothetical protein MMAR_3477 [Mycobacterium marinum M]
gi|183176786|gb|ACC41896.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=298
Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 164/321 (52%), Positives = 205/321 (64%), Gaps = 38/321 (11%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVV----QVVP-----PVITAP 51
MSA +LGIVVGVDGS S+ AV WAARDA +R+V L +V Q VP P++T+
Sbjct 1 MSAPMKHLGIVVGVDGSAASYAAVSWAARDATLRHVPLTLVHMVNQAVPMWPEMPMMTSM 60
Query 52 EGWAFEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQI 111
W E R Q++EQA K+A E + GR QI E+
Sbjct 61 SAWQEEDGR--------------------QVLEQAGKIAQEVTQQGRDTQIKSELRWSAP 100
Query 112 VPTLANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI----PEEPRPARP 167
VPT +S++ +VV+G G+GAVA LLGSVSS +V AH PVAVI PE P+P
Sbjct 101 VPTFVELSQEADLVVVGSHGRGAVARGLLGSVSSGVVHRAHCPVAVIRDEDPEAPQPEDR 160
Query 168 PHAPVVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNL 227
APVVVGIDGS S LA IAFDEASRRGV+L A+HAWSD+ +D P L+W+ ++
Sbjct 161 DRAPVVVGIDGSSASELATAIAFDEASRRGVELKAVHAWSDLEVVDLPGLDWSTVK---- 216
Query 228 EDEQEKMLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGM 287
E E+ LA RL+GWQ+RYPDV V +VVVCDRPA +L++ AQTAQLVV+GSHGRGGF M
Sbjct 217 -GEAEETLAERLAGWQERYPDVTVDRVVVCDRPARQLIDQAQTAQLVVLGSHGRGGFTSM 275
Query 288 HLGSVSRAVVNSGQAPVIVAR 308
+GS S AV+++ PVIVAR
Sbjct 276 LVGSTSNAVLHAVHTPVIVAR 296
>gi|118617760|ref|YP_906092.1| hypothetical protein MUL_2234 [Mycobacterium ulcerans Agy99]
gi|118569870|gb|ABL04621.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=295
Score = 273 bits (697), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 160/315 (51%), Positives = 205/315 (66%), Gaps = 29/315 (9%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVP------PVITAPEGW 54
MS LG+VVGVDGSP S+ AV WAARDA MRN+ L VV VV P + P+ W
Sbjct 1 MSTLGKRLGVVVGVDGSPASNAAVCWAARDAAMRNLPLTVVHVVNTDVATWPPMPYPDTW 60
Query 55 AFEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPT 114
A +QE + R +++ A K+A ++ + R I E++ VPT
Sbjct 61 AV----WQEDEGR-------------KVIAGAVKIAEDSVAGDRELTIKSEIVFSLPVPT 103
Query 115 LANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI-PEEPRPARPPHAPVV 173
+ +S + ++V+G G GA+A LLGSVSSSLVR A PVAVI E+P P HAPV+
Sbjct 104 MVEMSAEAELMVVGSSGHGALARVLLGSVSSSLVRRASCPVAVIRDEDPMIPDPLHAPVL 163
Query 174 VGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEK 233
VGIDGSP S LA +AFDEASRRGV+L+A+HAWSD G ++ P LNW+ +E E
Sbjct 164 VGIDGSPASELATAVAFDEASRRGVELIAVHAWSDQGVVELPGLNWS-----TMEAEARL 218
Query 234 MLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVS 293
LA RL+GW++RYPDV V +VVVCD PA +L+E++QT QLVVVGSHGRGG G+ LGSVS
Sbjct 219 SLAERLAGWEERYPDVTVRRVVVCDEPAHQLVEMSQTVQLVVVGSHGRGGITGVLLGSVS 278
Query 294 RAVVNSGQAPVIVAR 308
AVV++ + PVIVAR
Sbjct 279 NAVVHAVRMPVIVAR 293
>gi|183982995|ref|YP_001851286.1| hypothetical protein MMAR_2993 [Mycobacterium marinum M]
gi|183176321|gb|ACC41431.1| conserved membrane protein [Mycobacterium marinum M]
Length=295
Score = 272 bits (696), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 160/315 (51%), Positives = 205/315 (66%), Gaps = 29/315 (9%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVP------PVITAPEGW 54
MS LG+VVGVDGSP S+ AV WAARDA MRN+ L VV VV P + P+ W
Sbjct 1 MSTLGKRLGVVVGVDGSPASNAAVCWAARDAAMRNLPLTVVHVVNTDVATWPPMPYPDTW 60
Query 55 AFEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPT 114
A +QE + R +++ A K+A E+ + R I E++ VPT
Sbjct 61 AV----WQEDEGR-------------KVIAGAVKIAEESVAGDRELTIKSEIVFSLPVPT 103
Query 115 LANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI-PEEPRPARPPHAPVV 173
+ +S + ++V+G G GA+A LLGSVSSSLVR A PVAVI E+P P HAPV+
Sbjct 104 MVEMSAEAELMVVGSSGHGALARVLLGSVSSSLVRRASCPVAVIRDEDPMIPDPLHAPVL 163
Query 174 VGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEK 233
VGIDGSP S LA +AFDEASRRGV+L+A+HAWSD ++ P LNW+ +E E
Sbjct 164 VGIDGSPASELATAVAFDEASRRGVELIAVHAWSDQDVVELPGLNWS-----TMEAEARL 218
Query 234 MLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVS 293
LA RL+GW++RYPDV V +VVVCD+PA +L+E++QT QLVVVGSHGRGG G+ LGSVS
Sbjct 219 SLAERLAGWEERYPDVTVRRVVVCDKPAHQLVEMSQTVQLVVVGSHGRGGITGVLLGSVS 278
Query 294 RAVVNSGQAPVIVAR 308
AVV++ + PVIVAR
Sbjct 279 NAVVHAVRMPVIVAR 293
>gi|254775163|ref|ZP_05216679.1| hypothetical protein MaviaA2_10906 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=294
Score = 272 bits (695), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 159/310 (52%), Positives = 201/310 (65%), Gaps = 20/310 (6%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPE-GWAFEYS 59
M+A G++VGVDGSP S+ AV WAARDA MRNV L +V +V P+ A E
Sbjct 1 MAASSKRCGVLVGVDGSPASNFAVCWAARDAAMRNVPLTLVHMVNAATVWPQVPMAAEAV 60
Query 60 RFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANIS 119
+QE R +++++A K+A +A+ +GR IT E+ H PTLA +S
Sbjct 61 AWQEDDGR-------------RVLQEAVKIAEDATRNGRKLAITTELWHAPPAPTLAQLS 107
Query 120 RQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI-PEEPRPARPPHAPVVVGIDG 178
+ +VV+G G+GA+ LLGSVSS LVR A PVAVI E+P P APV+VGIDG
Sbjct 108 EEAELVVVGSTGRGAIGRVLLGSVSSGLVRRARCPVAVIHDEDPMMPYPQRAPVLVGIDG 167
Query 179 SPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARR 238
SP S LA IAFDEASRRGVDL A+HAWSD P ++W + E E+ LA R
Sbjct 168 SPASELATAIAFDEASRRGVDLNAVHAWSDTQVFGLPGMDWPAVR-----SEAERSLAER 222
Query 239 LSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVN 298
L+GWQ+RYPDV VH++VVCDRPA +L+E +++AQL VVGSHGRGG G LGSVS AVV+
Sbjct 223 LAGWQERYPDVTVHRMVVCDRPARQLIEQSESAQLTVVGSHGRGGLAGTLLGSVSNAVVH 282
Query 299 SGQAPVIVAR 308
S + PVIVAR
Sbjct 283 SVRMPVIVAR 292
>gi|41407839|ref|NP_960675.1| hypothetical protein MAP1741c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396193|gb|AAS04058.1| hypothetical protein MAP_1741c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=294
Score = 271 bits (693), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 159/310 (52%), Positives = 201/310 (65%), Gaps = 20/310 (6%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPE-GWAFEYS 59
M+A G++VGVDGSP S+ AV WAARDA MRNV L +V +V P+ A E
Sbjct 1 MAASSKRCGVLVGVDGSPASNFAVCWAARDAAMRNVPLTLVHMVNAATVWPQVPMAAEAV 60
Query 60 RFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANIS 119
+QE R +++++A K+A +A+ +GR IT E+ H PTLA +S
Sbjct 61 AWQEDDGR-------------RVLQEAVKIAEDATRNGRKLAITTELWHAPPAPTLAQLS 107
Query 120 RQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI-PEEPRPARPPHAPVVVGIDG 178
+ +VV+G G+GA+ LLGSVSS LVR A PVAVI E+P P APV+VGIDG
Sbjct 108 EEAELVVVGSTGRGAIGRLLLGSVSSGLVRRARCPVAVIHDEDPMMPYPQRAPVLVGIDG 167
Query 179 SPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARR 238
SP S LA IAFDEASRRGVDL A+HAWSD P ++W + E E+ LA R
Sbjct 168 SPASELATAIAFDEASRRGVDLNAVHAWSDTQVFGLPGIDWPAVR-----SEAERSLAER 222
Query 239 LSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVN 298
L+GWQ+RYPDV VH++VVCDRPA +L+E +++AQL VVGSHGRGG G LGSVS AVV+
Sbjct 223 LAGWQERYPDVTVHRMVVCDRPARQLIEQSESAQLTVVGSHGRGGLAGTLLGSVSNAVVH 282
Query 299 SGQAPVIVAR 308
S + PVIVAR
Sbjct 283 SVRMPVIVAR 292
>gi|118466349|ref|YP_881699.1| universal stress protein family protein [Mycobacterium avium
104]
gi|118167636|gb|ABK68533.1| universal stress protein family protein [Mycobacterium avium
104]
Length=294
Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/310 (51%), Positives = 200/310 (65%), Gaps = 20/310 (6%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPE-GWAFEYS 59
M+A G++VGVDGSP S+ AV WAARDA MRNV L +V +V P+ A E
Sbjct 1 MAASSKRCGVLVGVDGSPASNFAVCWAARDAAMRNVPLTLVHMVNAATVWPQVPMAAEAV 60
Query 60 RFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANIS 119
+QE R +++++A K+A +A+ +GR IT E+ H PTLA +S
Sbjct 61 AWQEDDGR-------------RVLQEAVKIAEDATRNGRNLAITTELWHAPPAPTLAQLS 107
Query 120 RQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI-PEEPRPARPPHAPVVVGIDG 178
+ +VV+G G+GA+ LLGSVSS LVR A PVAVI E+P P APV+VGIDG
Sbjct 108 EEAELVVVGSTGRGAIGRLLLGSVSSGLVRRARCPVAVIHDEDPMMPYPQRAPVLVGIDG 167
Query 179 SPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARR 238
SP S LA IAFDEA RRGVDL A+HAWSD P ++W + + E+ LA R
Sbjct 168 SPASELATAIAFDEALRRGVDLNAVHAWSDTQVFGLPGMDWPAVR-----SQAERSLAER 222
Query 239 LSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVN 298
L+GWQ+RYPDV VH++VVCDRPA +L+E +++AQL VVGSHGRGG G LGSVS AVV+
Sbjct 223 LAGWQERYPDVTVHRMVVCDRPARQLIEQSESAQLTVVGSHGRGGLAGTLLGSVSNAVVH 282
Query 299 SGQAPVIVAR 308
S + PVIVAR
Sbjct 283 SVRMPVIVAR 292
>gi|342859710|ref|ZP_08716363.1| hypothetical protein MCOL_12553 [Mycobacterium colombiense CECT
3035]
gi|342132842|gb|EGT86062.1| hypothetical protein MCOL_12553 [Mycobacterium colombiense CECT
3035]
Length=294
Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 156/310 (51%), Positives = 201/310 (65%), Gaps = 20/310 (6%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPE-GWAFEYS 59
M+A G+VVGVDGSP S+ AV WAARDA +RNV L +V +V P+ A E
Sbjct 1 MTASTKRHGVVVGVDGSPASNFAVCWAARDAALRNVPLTLVHMVNATTVWPQVPMAAEAL 60
Query 60 RFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANIS 119
+QE R +++++A K+A +A+ + R I E+ H PTLA +S
Sbjct 61 AWQEDDGR-------------RLLQEAVKIAEDATRTSRNVDIASELWHAPPAPTLARMS 107
Query 120 RQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI-PEEPRPARPPHAPVVVGIDG 178
+ MVV+G G+GA+ ALLGSVSS +VR A PVAVI E+P P APV+VGIDG
Sbjct 108 EEAVMVVVGSYGRGAIGRALLGSVSSGIVRRASCPVAVIHDEDPLMPYPQQAPVLVGIDG 167
Query 179 SPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARR 238
SP S LA IAFDEASRRGV+L A+HAWSD G + P ++ A ++ E E+ L+ R
Sbjct 168 SPASELATTIAFDEASRRGVELNAVHAWSDTGIFELPGVDRAAVK-----SEAERSLSER 222
Query 239 LSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVN 298
L+GWQ+RYPDV VH++VV DRPA +L+E ++TAQL VVGSHGRG G LGSVS AVV+
Sbjct 223 LAGWQERYPDVTVHRIVVSDRPARQLVEQSETAQLTVVGSHGRGCLTGALLGSVSNAVVH 282
Query 299 SGQAPVIVAR 308
S + PVIVAR
Sbjct 283 SVRMPVIVAR 292
>gi|240171511|ref|ZP_04750170.1| hypothetical protein MkanA1_19511 [Mycobacterium kansasii ATCC
12478]
Length=296
Score = 262 bits (670), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 158/310 (51%), Positives = 205/310 (67%), Gaps = 26/310 (8%)
Query 7 NLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITA-PEG-WAFEYSRFQEA 64
LGIVVGVDGS S+ AV WAA+DA +R++ L +V +V + PE + + +QE
Sbjct 3 RLGIVVGVDGSAASNAAVSWAAQDATLRHLPLTLVHMVNAAVPMWPEMPMSMGMAAWQEE 62
Query 65 QKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISRQVAM 124
R Q++EQA K+A +A + R I E+ VPTL +S + +
Sbjct 63 DGR-------------QVLEQAVKIAEQAVQAHREITIHTELRWSPPVPTLVELSAEAEL 109
Query 125 VVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI------PEEPRPARPPHAPVVVGIDG 178
VV+G G+GAVA A+LGSV S+L+R A PVAV+ + PA+ P APVVVGIDG
Sbjct 110 VVVGSYGRGAVARAVLGSVGSALLRRATCPVAVVRDPDPAADPAHPAQLPQAPVVVGIDG 169
Query 179 SPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARR 238
SP S LA IAFDEASRRGV+L A+HAWSD+ +D P L+W+ ++ E E+ +A R
Sbjct 170 SPVSELATAIAFDEASRRGVELKAVHAWSDLEVVDLPGLDWS-----TVKAEAEQTVAER 224
Query 239 LSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVN 298
L+GWQ+RYPDV VH++VVCDRPA L++ AQTAQLVV+GSHGRGGF GM LGSVS AVV+
Sbjct 225 LAGWQERYPDVTVHRLVVCDRPARELIDQAQTAQLVVLGSHGRGGFTGMLLGSVSNAVVH 284
Query 299 SGQAPVIVAR 308
S + PVIVAR
Sbjct 285 SVRTPVIVAR 294
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/156 (33%), Positives = 76/156 (49%), Gaps = 15/156 (9%)
Query 172 VVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHA-------WSDMGPLDFPRLNWAPIEW 224
+VVG+DGS S A A +A+ R + L +H W +M P+ W +
Sbjct 6 IVVGVDGSAASNAAVSWAAQDATLRHLPLTLVHMVNAAVPMWPEM-PMSMGMAAWQEEDG 64
Query 225 RNLEDEQEKMLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGF 284
R + ++ K+ + + + ++ +H + P P L+EL+ A+LVVVGS+GRG
Sbjct 65 RQVLEQAVKIAEQAVQA----HREITIHTELRWSPPVPTLVELSAEAELVVVGSYGRGAV 120
Query 285 PGMHLGSVSRAVVNSGQAPVIVARIPQ---DPAVPA 317
LGSV A++ PV V R P DPA PA
Sbjct 121 ARAVLGSVGSALLRRATCPVAVVRDPDPAADPAHPA 156
Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 47/160 (30%), Positives = 69/160 (44%), Gaps = 28/160 (17%)
Query 3 AQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSRFQ 62
AQ +VVG+DGSP S A A +A R V L+ V W+
Sbjct 156 AQLPQAPVVVGIDGSPVSELATAIAFDEASRRGVELKAVH----------AWS-----DL 200
Query 63 EAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPT-----LAN 117
E ++ S + A+A Q V A ++A G + +H +V L +
Sbjct 201 EVVDLPGLDWSTVKAEAEQTV--AERLA------GWQERYPDVTVHRLVVCDRPARELID 252
Query 118 ISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAV 157
++ +VVLG G+G G LLGSVS+++V PV V
Sbjct 253 QAQTAQLVVLGSHGRGGFTGMLLGSVSNAVVHSVRTPVIV 292
>gi|15609142|ref|NP_216521.1| hypothetical protein Rv2005c [Mycobacterium tuberculosis H37Rv]
gi|15841487|ref|NP_336524.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
gi|31793185|ref|NP_855678.1| hypothetical protein Mb2028c [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=295
Score = 258 bits (659), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 158/315 (51%), Positives = 200/315 (64%), Gaps = 29/315 (9%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVP------PVITAPEGW 54
MS + G+VVGVDGS S A W A DA MRN+ L VV VV P + PE W
Sbjct 1 MSKPRKQHGVVVGVDGSLESDAAACWGATDAAMRNIPLTVVHVVNADVATWPPMPYPETW 60
Query 55 AFEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPT 114
+QE + R QIV A K+A EA + R + E++ VPT
Sbjct 61 GV----WQEDEGR-------------QIVANAVKLAKEAVGADRKLSVKSELVFSTPVPT 103
Query 115 LANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI-PEEPRPARPPHAPVV 173
+ IS + MVVLG G+GA+A LLGSVSSSLVR A PVAVI ++ P HAPV+
Sbjct 104 MVEISNEAEMVVLGSSGRGALARGLLGSVSSSLVRRAGCPVAVIHSDDAVIPDPQHAPVL 163
Query 174 VGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEK 233
VGIDGSP S LA +AFDEASRRGV+L+A+HAWSD+ ++ P L+++ ++ E E
Sbjct 164 VGIDGSPVSELATAVAFDEASRRGVELIAVHAWSDVEVVELPGLDFSAVQ-----QEAEL 218
Query 234 MLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVS 293
LA RL+GWQ+RYPDV V +VVVCDRPA +L++ + +AQLVVVGSHGRGG GM LGSVS
Sbjct 219 SLAERLAGWQERYPDVPVSRVVVCDRPARKLVQKSASAQLVVVGSHGRGGLTGMLLGSVS 278
Query 294 RAVVNSGQAPVIVAR 308
AV+++ + PVIVAR
Sbjct 279 NAVLHAARVPVIVAR 293
>gi|340627015|ref|YP_004745467.1| hypothetical protein MCAN_20251 [Mycobacterium canettii CIPT
140010059]
gi|340005205|emb|CCC44357.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=295
Score = 258 bits (659), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 159/315 (51%), Positives = 200/315 (64%), Gaps = 29/315 (9%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVP------PVITAPEGW 54
MS + G+VVGVDGS S AV W A DA MRN+ L VV VV P + PE W
Sbjct 1 MSKPRKQHGLVVGVDGSLESDAAVCWGATDAAMRNIPLTVVHVVNADVATWPPMPYPETW 60
Query 55 AFEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPT 114
+QE + R QIV A K+A EA + R + E++ VPT
Sbjct 61 GV----WQEDEGR-------------QIVANAVKLAKEAVGADRKLSVKSELVFSTPVPT 103
Query 115 LANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPA-RPPHAPVV 173
+ IS + MVVLG G+GA+A LLGSVSSSLVR A PVAVI + P HAPV+
Sbjct 104 MVEISNEAEMVVLGSSGRGALARGLLGSVSSSLVRRAGCPVAVIHSDGAVIPDPQHAPVL 163
Query 174 VGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEK 233
VGIDGSP S LA +AFDEASRRGV+L+A+HAWSD+ ++ P L+++ ++ E E
Sbjct 164 VGIDGSPVSELATAVAFDEASRRGVELIAVHAWSDVEVVELPGLDFSAVQ-----QEAEL 218
Query 234 MLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVS 293
LA RL+GWQ+RYPDV V +VVVCDRPA +L++ + +AQLVVVGSHGRGG GM LGSVS
Sbjct 219 SLAERLAGWQERYPDVPVSRVVVCDRPARKLVQKSASAQLVVVGSHGRGGLTGMLLGSVS 278
Query 294 RAVVNSGQAPVIVAR 308
AV+++ + PVIVAR
Sbjct 279 NAVLHAARVPVIVAR 293
>gi|296169101|ref|ZP_06850760.1| universal stress protein family protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896221|gb|EFG75883.1| universal stress protein family protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=313
Score = 255 bits (652), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 154/309 (50%), Positives = 201/309 (66%), Gaps = 17/309 (5%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR 60
MSA GIVVGVDGSP S+ AV WAARDA +R+V L VV +V ++ P A S
Sbjct 19 MSALANRHGIVVGVDGSPASNAAVCWAARDAALRHVPLTVVHMVNAMV--PMYPALPLST 76
Query 61 FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR 120
+ E Q +++EQA K+A +A ++ R + E+ VPTL +S+
Sbjct 77 GVAVWQEE---------QGGEVLEQAVKIAADAVTTDRKIDVRSELRCAPPVPTLVEMSK 127
Query 121 QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI-PEEPRPARPPHAPVVVGIDGS 179
+ MVV+G G+GA+ LLGSVSSS+VR A PVAV+ E+P P APV+VG+DGS
Sbjct 128 EAEMVVVGSNGRGALGRLLLGSVSSSVVRGARCPVAVVRDEDPLMEHPQQAPVLVGVDGS 187
Query 180 PTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRL 239
P S A +AFDEASRRGV L ALHAWSD+ + P ++W+ ++ E E+ LA +L
Sbjct 188 PASEAAVAVAFDEASRRGVGLTALHAWSDVDVFELPGVDWSAVK-----AEAERSLAEQL 242
Query 240 SGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNS 299
+GWQ+RYPDV V +VVV DRPA +L+E ++ AQLVVVGSHGRGG G+ LGSVS AVV+S
Sbjct 243 AGWQERYPDVTVQRVVVSDRPARQLIEQSEAAQLVVVGSHGRGGLSGVLLGSVSNAVVHS 302
Query 300 GQAPVIVAR 308
+ PVIVAR
Sbjct 303 VRMPVIVAR 311
>gi|145224961|ref|YP_001135639.1| UspA domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|315445292|ref|YP_004078171.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
gi|145217447|gb|ABP46851.1| UspA domain protein [Mycobacterium gilvum PYR-GCK]
gi|315263595|gb|ADU00337.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
Length=295
Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 158/311 (51%), Positives = 190/311 (62%), Gaps = 21/311 (6%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAF--EY 58
MS Q LGIVVGVDGS S AV+WAARDA +R V L + V+P A + W
Sbjct 1 MSTQPAPLGIVVGVDGSAASRVAVDWAARDAALRQVPLTLAYVLPG--AAVQSWIQVPLP 58
Query 59 SRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANI 118
+ F E +K E QAH + +T +VL GQ VPTLA++
Sbjct 59 ASFYEDEKAEATRVLADARAVVDAATQAHPLP----------AVTEKVLSGQPVPTLADL 108
Query 119 SRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI-PEEPRPARPPHAPVVVGID 177
SR M+V+G RG G +LGSVSS LV HA PVAVI E+P P APVVVGID
Sbjct 109 SRDADMIVVGSRGMGKWERRVLGSVSSGLVHHARCPVAVIYDEDPLIPHPAQAPVVVGID 168
Query 178 GSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLAR 237
GSP S A IAFDEA RRGVDLVA+H WSD G + P +EW ++ E+E +L+
Sbjct 169 GSPASERATAIAFDEACRRGVDLVAVHTWSDAG-YELPG-----VEWTEVQPEEEMLLSE 222
Query 238 RLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVV 297
RL+GW +RYPDV VH+VV D+PA RLLE A+ AQL+VVGSHGRGGF GM LGSV +V
Sbjct 223 RLAGWHERYPDVTVHRVVRRDQPARRLLEEAEKAQLLVVGSHGRGGFTGMLLGSVGSQIV 282
Query 298 NSGQAPVIVAR 308
S + PVIVAR
Sbjct 283 QSSRTPVIVAR 293
>gi|340627037|ref|YP_004745489.1| hypothetical protein MCAN_20491 [Mycobacterium canettii CIPT
140010059]
gi|340005227|emb|CCC44381.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=294
Score = 251 bits (642), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 146/310 (48%), Positives = 196/310 (64%), Gaps = 20/310 (6%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFE--Y 58
MSA GI+VGVDGS S+ AV WAAR+ MR + + ++ +V PV+ GW Y
Sbjct 1 MSAATAKYGILVGVDGSAQSNAAVAWAAREGVMRQLPITLLHIVAPVVV---GWPVGQLY 57
Query 59 SRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANI 118
+ E QK A Q++EQA + + + Q+ E++ +VPTL +
Sbjct 58 ANMTEWQKD----------NAQQVIEQAREALTNSLGESKPPQVHTELVFSNVVPTLIDA 107
Query 119 SRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDG 178
S+Q ++V+G +G GA+ LLGS+S++L+ HA PVA+I APV+VGIDG
Sbjct 108 SQQAWLMVVGSQGMGALGRLLLGSISTALLHHARCPVAIIHSGNGATPDFDAPVLVGIDG 167
Query 179 SPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARR 238
SP S A +AFDEASRR VDLVALHAW+D+G FP L ++WR E + ++LA R
Sbjct 168 SPASEAATALAFDEASRRRVDLVALHAWTDLGM--FPVLG---MDWREREKREAEVLAER 222
Query 239 LSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVN 298
L+GWQ++YPDV VH+ +VCD+PA LLE ++ AQLVVVGSHGRGGF GM LGSVS AV +
Sbjct 223 LAGWQEQYPDVRVHRSLVCDKPARWLLEHSERAQLVVVGSHGRGGFSGMLLGSVSSAVAH 282
Query 299 SGQAPVIVAR 308
S + PVIV R
Sbjct 283 SVRIPVIVVR 292
>gi|240170463|ref|ZP_04749122.1| hypothetical protein MkanA1_14215 [Mycobacterium kansasii ATCC
12478]
Length=294
Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 156/310 (51%), Positives = 198/310 (64%), Gaps = 20/310 (6%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFE--Y 58
MS T GI+VGVDGS S AV WAAR+A + + + ++ V PV+ GW Y
Sbjct 1 MSRDTTQYGILVGVDGSAQSDAAVAWAAREASLHQMPVTLMHGVAPVVV---GWPVGQLY 57
Query 59 SRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANI 118
+ E QK E A ++E+A + E+ R + EV++ IVP L +
Sbjct 58 TEMPEWQKDE----------AQTVIERARRALDESLGESRLPDVRTEVVYSNIVPALIDA 107
Query 119 SRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDG 178
S+ M V+G +G GA+ ALLGSVSS+L+ HAHGPVAVI + A APV+VGIDG
Sbjct 108 SKDAWMTVVGSQGMGALGRALLGSVSSALLHHAHGPVAVIHSDDGVAPDTSAPVLVGIDG 167
Query 179 SPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARR 238
SP S A +AFDEASRRGVDLVALHAWSD+G FP L ++WR+ E + E++LA R
Sbjct 168 SPASEAATALAFDEASRRGVDLVALHAWSDVGV--FPILG---MDWRDRESQGEEVLAER 222
Query 239 LSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVN 298
L+GWQ++YPDV V + +VCD+PA LLE AQ AQLVVVGS GRGGFPGM LGSV AV +
Sbjct 223 LAGWQEQYPDVRVQRSLVCDKPAHWLLEGAQHAQLVVVGSRGRGGFPGMLLGSVGSAVAH 282
Query 299 SGQAPVIVAR 308
S + PVIV R
Sbjct 283 SAKIPVIVVR 292
>gi|108798076|ref|YP_638273.1| hypothetical protein Mmcs_1104 [Mycobacterium sp. MCS]
gi|119867172|ref|YP_937124.1| UspA domain-containing protein [Mycobacterium sp. KMS]
gi|126433736|ref|YP_001069427.1| UspA domain-containing protein [Mycobacterium sp. JLS]
gi|108768495|gb|ABG07217.1| UspA [Mycobacterium sp. MCS]
gi|119693261|gb|ABL90334.1| UspA domain protein [Mycobacterium sp. KMS]
gi|126233536|gb|ABN96936.1| UspA domain protein [Mycobacterium sp. JLS]
Length=295
Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 153/308 (50%), Positives = 187/308 (61%), Gaps = 26/308 (8%)
Query 7 NLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGW-----AFEYSRF 61
N GIVVGVDGSP AV WAAR+A R+V L +V V+P T W E+ R
Sbjct 6 NQGIVVGVDGSPQGMRAVTWAAREAAGRDVPLTLVHVLPD--TEVRMWLDVPPTDEFWRT 63
Query 62 QEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISRQ 121
E Q REI + A+A VA S + R ++G VPTL ++S+
Sbjct 64 VEHQNREIQSEAVKTAEA--------AVAGTGSLTVRQRSVSGNA-----VPTLVDLSKD 110
Query 122 VAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI-PEEPRPARPPHAPVVVGIDGSP 180
MVV+G RG GA+ +LGSVS LV HAH PVAVI +EP APVVVGIDGSP
Sbjct 111 AEMVVVGSRGLGAIGQRILGSVSRGLVHHAHCPVAVIHDDEPDAPERDRAPVVVGIDGSP 170
Query 181 TSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLS 240
S LA IAFD+ASRR V+L+A+HAWSD FP EW + + +++LA RL+
Sbjct 171 ASELATAIAFDQASRRKVELIAVHAWSDPTIYAFPNE-----EWMTFKPQADEVLAERLA 225
Query 241 GWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSG 300
GW DRYPDV V +VVV D+ +LLE ++ AQLVVVGSHGRGGF GM LGSVS AV +
Sbjct 226 GWADRYPDVPVQRVVVRDKAVHQLLEQSEHAQLVVVGSHGRGGFAGMLLGSVSSAVAQAA 285
Query 301 QAPVIVAR 308
+ PVIVAR
Sbjct 286 RVPVIVAR 293
>gi|15609163|ref|NP_216542.1| hypothetical protein Rv2026c [Mycobacterium tuberculosis H37Rv]
gi|15841513|ref|NP_336550.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
gi|31793208|ref|NP_855701.1| hypothetical protein Mb2051c [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=294
Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/310 (48%), Positives = 197/310 (64%), Gaps = 20/310 (6%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFE--Y 58
MSA GI+VGVDGS S+ AV WAAR+A MR + + ++ +V PV+ GW Y
Sbjct 1 MSAATAKYGILVGVDGSAQSNAAVAWAAREAVMRQLPITLLHIVAPVVV---GWPVGQLY 57
Query 59 SRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANI 118
+ E QK A Q++EQA + + + Q+ E++ +VPTL +
Sbjct 58 ANMTEWQKD----------NAQQVIEQAREALTNSLGESKPPQVHTELVFSNVVPTLIDA 107
Query 119 SRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDG 178
S+Q ++V+G +G GA+ LLGS+S++L+ HA PVA+I APV+VGIDG
Sbjct 108 SQQAWLMVVGSQGMGALGRLLLGSISTALLHHARCPVAIIHSGNGATPDSDAPVLVGIDG 167
Query 179 SPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARR 238
SP S A +AFDEASRR VDLVALHAW+D+G FP L ++WR E + ++LA R
Sbjct 168 SPASEAATALAFDEASRRRVDLVALHAWTDLGM--FPVLG---MDWREREKREAEVLAER 222
Query 239 LSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVN 298
L+GWQ++YPDV VH+ +VCD+PA LLE ++ AQLVVVGSHGRGGF GM LGSVS AV +
Sbjct 223 LAGWQEQYPDVRVHRSLVCDKPARWLLEHSEQAQLVVVGSHGRGGFSGMLLGSVSSAVAH 282
Query 299 SGQAPVIVAR 308
S + PVIV R
Sbjct 283 SVRIPVIVVR 292
>gi|240170642|ref|ZP_04749301.1| hypothetical protein MkanA1_15110 [Mycobacterium kansasii ATCC
12478]
Length=297
Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/315 (46%), Positives = 195/315 (62%), Gaps = 29/315 (9%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITA------PEGW 54
MS++ LGIVVG+D SP + AV+WAA DA++RN+ L +V V P +++ P G
Sbjct 1 MSSRNAPLGIVVGIDESPSARLAVQWAAHDAELRNIPLTLVHAVSPEVSSRLKMPMPAGL 60
Query 55 AFEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPT 114
A R+Q+ + R ++V++A KV EA+ G A + E+L VP
Sbjct 61 A----RWQQDRGR-------------RLVDEALKVVDEAAQGGGPAGVHTEILGSPAVPA 103
Query 115 LANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI-PEEPRPARPPHAPVV 173
L ++S+ MVV G G G G LGSVSS+++R+AH PV ++ E+P A+ APV+
Sbjct 104 LVDLSKDAEMVVTGCLGSGRWPGRQLGSVSSAVLRYAHCPVVIVHDEDPSAAQRGQAPVL 163
Query 174 VGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEK 233
VGIDGS S LA AFDEA+RR V LV LHAWSD+ ++P I+W + E+
Sbjct 164 VGIDGSSASELATAFAFDEAARRRVGLVGLHAWSDIDVSEWPG-----IDWPATQSMAEQ 218
Query 234 MLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVS 293
+LA RL+GWQ++YPDV V ++VV D+PA +L++ + AQLVVVGS GRGGF GM +GSV
Sbjct 219 VLAERLAGWQEQYPDVAVTRIVVQDQPARQLVDKSGQAQLVVVGSRGRGGFAGMSVGSVG 278
Query 294 RAVVNSGQAPVIVAR 308
AV Q PVIVAR
Sbjct 279 EAVAQLAQVPVIVAR 293
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/161 (28%), Positives = 68/161 (43%), Gaps = 18/161 (11%)
Query 2 SAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSRF 61
+AQ+ ++VG+DGS S A +A +A R V L + I E ++
Sbjct 154 AAQRGQAPVLVGIDGSSASELATAFAFDEAARRRVGLVGLHAWSD-IDVSEWPGIDWPAT 212
Query 62 QEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISRQ 121
Q ++ + E L Q + A +T V+ Q L + S Q
Sbjct 213 QSMAEQVLAER--LAGWQEQYPDVA---------------VTRIVVQDQPARQLVDKSGQ 255
Query 122 VAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEP 162
+VV+G RG+G AG +GSV ++ + A PV V E P
Sbjct 256 AQLVVVGSRGRGGFAGMSVGSVGEAVAQLAQVPVIVARESP 296
>gi|315445921|ref|YP_004078800.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
gi|315264224|gb|ADU00966.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
Length=293
Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/310 (45%), Positives = 183/310 (60%), Gaps = 20/310 (6%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEY-- 58
MS +LGI+VGVDGSP SH AV WAA++A +R + ++ VV P++ W +
Sbjct 1 MSDSSPDLGILVGVDGSPESHAAVRWAAQEAVLRRRPVTLMHVVTPIVVT---WPIDTVV 57
Query 59 SRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANI 118
+ F E Q+ A ++++Q+ + A S A + E+ H IVP
Sbjct 58 ANFYEWQED----------NAQRVLKQSQETLAAAVSDSTAPTVNVELRHDGIVPEFTEA 107
Query 119 SRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDG 178
S+ ++VLG RG G V GA+LGSVS +L+ HAH P + E P PV++GIDG
Sbjct 108 SKHADLLVLGSRGLGPVGGAVLGSVSRALLHHAHCPTVIAKEGVVPRDAGALPVLLGIDG 167
Query 179 SPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARR 238
SP S A AFDEASRRG DLVALHAWSD+ FP L ++W E E ++LA R
Sbjct 168 SPASENATAFAFDEASRRGADLVALHAWSDVAV--FPILG---MDWHQYEQEGHEILAER 222
Query 239 LSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVN 298
L+GWQ+RYPDV + + +VCD PA L++ ++ +QLVVVGS GRGG G+ LGSVS V
Sbjct 223 LAGWQERYPDVHIRRRIVCDTPARWLIDESRHSQLVVVGSRGRGGIAGLLLGSVSTTVAE 282
Query 299 SGQAPVIVAR 308
S APV V R
Sbjct 283 SALAPVAVVR 292
>gi|118469207|ref|YP_888229.1| universal stress protein family protein [Mycobacterium smegmatis
str. MC2 155]
gi|118170494|gb|ABK71390.1| universal stress protein family protein [Mycobacterium smegmatis
str. MC2 155]
Length=293
Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/312 (46%), Positives = 187/312 (60%), Gaps = 27/312 (8%)
Query 2 SAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAF----- 56
+ G+VV VDGS S AV WAAR+A +R + + V+ VV P+I W
Sbjct 4 NGNGAGYGMVVAVDGSAESDAAVRWAAREATLRKIPVTVMHVVEPMIV---NWPVPPVQG 60
Query 57 EYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLA 116
+ +QEA R +++H AH VA+E S+ I E+ + IV L
Sbjct 61 SVTEWQEANARNVIKH------AHDTF-----VAVEESAPD---GIRHEIRYAGIVAELV 106
Query 117 NISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGI 176
++S+ M+V+G RG GA GALLGSVSS ++ HAH PVAVI + P +PV+VGI
Sbjct 107 DVSKNATMMVVGSRGLGAFGGALLGSVSSGVIHHAHCPVAVIHGDQIRRPDPRSPVLVGI 166
Query 177 DGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLA 236
DGSP S A AFDEASRR VDL+ALHAWSD+G F L ++W ED+ ++L
Sbjct 167 DGSPASEDATAFAFDEASRRRVDLIALHAWSDVGV--FSALG---MDWHEYEDQGRELLG 221
Query 237 RRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAV 296
RL+GW++RYPDV V + +VCD+PA L++ ++ AQLVVVGSHGR GF GM LGSV V
Sbjct 222 ERLAGWRERYPDVRVTRQIVCDQPARWLIDGSRHAQLVVVGSHGRAGFAGMLLGSVGSKV 281
Query 297 VNSGQAPVIVAR 308
+ +PVIV R
Sbjct 282 ARAAYSPVIVVR 293
>gi|289754743|ref|ZP_06514121.1| universal stress protein family [Mycobacterium tuberculosis EAS054]
gi|289695330|gb|EFD62759.1| universal stress protein family [Mycobacterium tuberculosis EAS054]
Length=297
Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 142/317 (45%), Positives = 194/317 (62%), Gaps = 33/317 (10%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITA------PEGW 54
MS+ ++LGI+VG+D SP + AV WAARDA++R + L +V V P + P G
Sbjct 1 MSSGNSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHTVSPEVATWLEVPLPPG- 59
Query 55 AFEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAA--QITGEVLHGQIV 112
R+Q+ R +L+ A ++VEQA S RA + E++ V
Sbjct 60 ---VLRWQQDHGR------HLIDDALKVVEQA---------SLRAGPPTVHSEIVPAAAV 101
Query 113 PTLANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPA-RPPHAP 171
PTL ++S+ ++V+G G G G LLGSVSS L+RHAH PV +I +E P AP
Sbjct 102 PTLVDMSKDAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDEDSVMPHPQQAP 161
Query 172 VVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQ 231
V+VG+DGS S LA IAFDEASRR VDLVALHAWSD+ ++P I+W +
Sbjct 162 VLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPG-----IDWPATQSMA 216
Query 232 EKMLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGS 291
E++LA RL+GWQ+RYP+V + +VVV D+PA +L++ ++ AQLVVVGS GRGG+ GM +GS
Sbjct 217 EQVLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSEEAQLVVVGSRGRGGYAGMLVGS 276
Query 292 VSRAVVNSGQAPVIVAR 308
V V + PVIVAR
Sbjct 277 VGETVAQLARTPVIVAR 293
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/151 (30%), Positives = 63/151 (42%), Gaps = 18/151 (11%)
Query 10 IVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSRFQEAQKREI 69
++VGVDGS S A A +A RNV L + V + E+ + +
Sbjct 162 VLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS------EWPGIDWPATQSM 215
Query 70 VEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISRQVAMVVLGY 129
E L + E+ VA IT V+ Q L S + +VV+G
Sbjct 216 AEQ-VLAERLAGWQERYPNVA-----------ITRVVVRDQPARQLVQRSEEAQLVVVGS 263
Query 130 RGQGAVAGALLGSVSSSLVRHAHGPVAVIPE 160
RG+G AG L+GSV ++ + A PV V E
Sbjct 264 RGRGGYAGMLVGSVGETVAQLARTPVIVARE 294
>gi|15609760|ref|NP_217139.1| hypothetical protein Rv2623 [Mycobacterium tuberculosis H37Rv]
gi|15842163|ref|NP_337200.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
gi|31793809|ref|NP_856302.1| hypothetical protein Mb2656 [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=297
Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 142/317 (45%), Positives = 194/317 (62%), Gaps = 33/317 (10%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITA------PEGW 54
MS+ ++LGI+VG+D SP + AV WAARDA++R + L +V V P + P G
Sbjct 1 MSSGNSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPG- 59
Query 55 AFEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAA--QITGEVLHGQIV 112
R+Q+ R +L+ A ++VEQA S RA + E++ V
Sbjct 60 ---VLRWQQDHGR------HLIDDALKVVEQA---------SLRAGPPTVHSEIVPAAAV 101
Query 113 PTLANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPA-RPPHAP 171
PTL ++S+ ++V+G G G G LLGSVSS L+RHAH PV +I +E P AP
Sbjct 102 PTLVDMSKDAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDEDSVMPHPQQAP 161
Query 172 VVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQ 231
V+VG+DGS S LA IAFDEASRR VDLVALHAWSD+ ++P I+W +
Sbjct 162 VLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPG-----IDWPATQSMA 216
Query 232 EKMLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGS 291
E++LA RL+GWQ+RYP+V + +VVV D+PA +L++ ++ AQLVVVGS GRGG+ GM +GS
Sbjct 217 EQVLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSEEAQLVVVGSRGRGGYAGMLVGS 276
Query 292 VSRAVVNSGQAPVIVAR 308
V V + PVIVAR
Sbjct 277 VGETVAQLARTPVIVAR 293
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 44/151 (30%), Positives = 63/151 (42%), Gaps = 18/151 (11%)
Query 10 IVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSRFQEAQKREI 69
++VGVDGS S A A +A RNV L + V + E+ + +
Sbjct 162 VLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS------EWPGIDWPATQSM 215
Query 70 VEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISRQVAMVVLGY 129
E L + E+ VA IT V+ Q L S + +VV+G
Sbjct 216 AEQ-VLAERLAGWQERYPNVA-----------ITRVVVRDQPARQLVQRSEEAQLVVVGS 263
Query 130 RGQGAVAGALLGSVSSSLVRHAHGPVAVIPE 160
RG+G AG L+GSV ++ + A PV V E
Sbjct 264 RGRGGYAGMLVGSVGETVAQLARTPVIVARE 294
>gi|118617761|ref|YP_906093.1| hypothetical protein MUL_2236 [Mycobacterium ulcerans Agy99]
gi|118569871|gb|ABL04622.1| conserved hypothetical transmembrane protein [Mycobacterium ulcerans
Agy99]
Length=294
Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 146/310 (48%), Positives = 192/310 (62%), Gaps = 20/310 (6%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFE--Y 58
MS+ GI+V VDGS S AV WAAR+A + + ++ V PV+ GW Y
Sbjct 1 MSSGAKKYGILVAVDGSAQSDAAVPWAAREAGLHRTPITLMHGVAPVVV---GWPVGQLY 57
Query 59 SRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANI 118
+ + Q+ E A+ ++E+A KV EA + + EV++ +V L
Sbjct 58 AEMPDWQRDE----------ANSVMERARKVLSEALGDSESPDVRTEVVYSNVVAALIEA 107
Query 119 SRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDG 178
S Q +MVV+G +G GA+ LLGSV S+L+ HAH PVAV+ + A P A VVVGIDG
Sbjct 108 STQASMVVVGSQGMGALGRMLLGSVCSALLHHAHCPVAVVHSDSGAAPDPGAAVVVGIDG 167
Query 179 SPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARR 238
SP + A +AF+EASRRGVDLVALHAWSD+G FP L ++WR E + E++LA R
Sbjct 168 SPAAEAATAMAFEEASRRGVDLVALHAWSDVGV--FPILG---MDWRERESQGEEILAER 222
Query 239 LSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVN 298
L+ WQ +YPDV V + +VCD+PA LLE AQ AQLV+VG+ GRGGFPGM LGSVS V +
Sbjct 223 LASWQQQYPDVHVKRSLVCDKPAHWLLEEAQHAQLVIVGNRGRGGFPGMLLGSVSSTVAH 282
Query 299 SGQAPVIVAR 308
S + PVIV R
Sbjct 283 SAKVPVIVVR 292
>gi|340627643|ref|YP_004746095.1| hypothetical protein MCAN_26681 [Mycobacterium canettii CIPT
140010059]
gi|340005833|emb|CCC44999.1| conserved hypothetical protein TB31.7 [Mycobacterium canettii
CIPT 140010059]
Length=297
Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 138/315 (44%), Positives = 191/315 (61%), Gaps = 29/315 (9%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITA------PEGW 54
MS+ ++LGI+VG+D SP + AV WAARDA++R + L +V V P + P G
Sbjct 1 MSSGNSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPG- 59
Query 55 AFEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPT 114
R+Q+ R ++++ A KV +AS + E++ VPT
Sbjct 60 ---VLRWQQDHGR-------------RLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPT 103
Query 115 LANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPA-RPPHAPVV 173
L ++S+ ++V+G G G G LLGSVSS L+RHAH PV +I +E P APV+
Sbjct 104 LVDMSKDAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDEDSVMPHPQQAPVL 163
Query 174 VGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEK 233
VG+DGS S LA IAFDEASRR VDLVALHAWSD+ ++P I+W + E+
Sbjct 164 VGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPG-----IDWPATQSMAEQ 218
Query 234 MLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVS 293
+LA RL+GWQ+RYP+V + +VVV D+PA +L++ ++ AQLVVVGS GRGG+ GM +GSV
Sbjct 219 VLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSEEAQLVVVGSRGRGGYAGMLVGSVG 278
Query 294 RAVVNSGQAPVIVAR 308
V + PVIVAR
Sbjct 279 ETVAQLARTPVIVAR 293
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/151 (30%), Positives = 63/151 (42%), Gaps = 18/151 (11%)
Query 10 IVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSRFQEAQKREI 69
++VGVDGS S A A +A RNV L + V + E+ + +
Sbjct 162 VLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS------EWPGIDWPATQSM 215
Query 70 VEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISRQVAMVVLGY 129
E L + E+ VA IT V+ Q L S + +VV+G
Sbjct 216 AEQ-VLAERLAGWQERYPNVA-----------ITRVVVRDQPARQLVQRSEEAQLVVVGS 263
Query 130 RGQGAVAGALLGSVSSSLVRHAHGPVAVIPE 160
RG+G AG L+GSV ++ + A PV V E
Sbjct 264 RGRGGYAGMLVGSVGETVAQLARTPVIVARE 294
>gi|323719497|gb|EGB28624.1| hypothetical protein TMMG_01271 [Mycobacterium tuberculosis CDC1551A]
Length=242
Score = 228 bits (581), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 127/232 (55%), Positives = 164/232 (71%), Gaps = 6/232 (2%)
Query 78 QAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISRQVAMVVLGYRGQGAVAG 137
+ QIV A K+A EA + R + E++ VPT+ IS + MVVLG G+GA+A
Sbjct 14 EGRQIVANAVKLAKEAVGADRKLSVKSELVFSTPVPTMVEISNEAEMVVLGSSGRGALAR 73
Query 138 ALLGSVSSSLVRHAHGPVAVI-PEEPRPARPPHAPVVVGIDGSPTSGLAAEIAFDEASRR 196
LLGSVSSSLVR A PVAVI ++ P HAPV+VGIDGSP S LA +AFDEASRR
Sbjct 74 GLLGSVSSSLVRRAGCPVAVIHSDDAVIPDPQHAPVLVGIDGSPVSELATAVAFDEASRR 133
Query 197 GVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLSGWQDRYPDVVVHKVVV 256
GV+L+A+HAWSD+ ++ P L+++ ++ E E LA RL+GWQ+RYPDV V +VVV
Sbjct 134 GVELIAVHAWSDVEVVELPGLDFSAVQ-----QEAELSLAERLAGWQERYPDVPVSRVVV 188
Query 257 CDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSGQAPVIVAR 308
CDRPA +L++ + +AQLVVVGSHGRGG GM LGSVS AV+++ + PVIVAR
Sbjct 189 CDRPARKLVQKSASAQLVVVGSHGRGGLTGMLLGSVSNAVLHAARVPVIVAR 240
>gi|145225568|ref|YP_001136246.1| UspA domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145218054|gb|ABP47458.1| UspA domain protein [Mycobacterium gilvum PYR-GCK]
Length=293
Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/310 (45%), Positives = 184/310 (60%), Gaps = 20/310 (6%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEY-- 58
MS T+LGI+VGVDGSP SH AV WAA++A +R + ++ VV P++ W +
Sbjct 1 MSDPSTDLGILVGVDGSPESHAAVRWAAQEAVLRRRPVTLMHVVSPIVVT---WPIDTVV 57
Query 59 SRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANI 118
+ F E Q+ A ++++Q+ + A S A + EV H IVP
Sbjct 58 ANFYEWQED----------NAARVLKQSQETLAAAVSDTTAPTVEVEVRHDGIVPEFTEA 107
Query 119 SRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDG 178
S+ ++VLG RG G V GA+LGSVS +L+ HA PV + E P PV++GIDG
Sbjct 108 SQHADLLVLGSRGLGPVGGAVLGSVSRALLHHAQCPVVIAKEGVVPRDAGALPVLLGIDG 167
Query 179 SPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARR 238
SP S A AFDEASRRG DLVALHAWSD+ FP L ++W E + ++LA R
Sbjct 168 SPASENATTFAFDEASRRGADLVALHAWSDVAV--FPILG---MDWHQYEQQGHEILAER 222
Query 239 LSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVN 298
L+GWQ+RYPDV + + +VCD PA L++ ++ +QLVVVGS GRGG G+ LGSVS V
Sbjct 223 LAGWQERYPDVHIRRRIVCDTPARWLIDESRHSQLVVVGSRGRGGIAGLLLGSVSTTVAE 282
Query 299 SGQAPVIVAR 308
S APV V R
Sbjct 283 SALAPVAVVR 292
>gi|225698003|pdb|3CIS|A Chain A, The Crystal Structure Of Rv2623 From Mycobacterium Tuberculosis
gi|225698004|pdb|3CIS|B Chain B, The Crystal Structure Of Rv2623 From Mycobacterium Tuberculosis
gi|225698005|pdb|3CIS|C Chain C, The Crystal Structure Of Rv2623 From Mycobacterium Tuberculosis
gi|225698006|pdb|3CIS|D Chain D, The Crystal Structure Of Rv2623 From Mycobacterium Tuberculosis
gi|225698007|pdb|3CIS|E Chain E, The Crystal Structure Of Rv2623 From Mycobacterium Tuberculosis
gi|225698008|pdb|3CIS|F Chain F, The Crystal Structure Of Rv2623 From Mycobacterium Tuberculosis
gi|225698009|pdb|3CIS|G Chain G, The Crystal Structure Of Rv2623 From Mycobacterium Tuberculosis
gi|225698010|pdb|3CIS|H Chain H, The Crystal Structure Of Rv2623 From Mycobacterium Tuberculosis
Length=309
Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 140/313 (45%), Positives = 191/313 (62%), Gaps = 33/313 (10%)
Query 5 QTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITA------PEGWAFEY 58
++LGI+VG+D SP + AV WAARDA++R + L +V V P + P G
Sbjct 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPG----V 72
Query 59 SRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAA--QITGEVLHGQIVPTLA 116
R+Q+ R +L+ A ++VEQA S RA + E++ VPTL
Sbjct 73 LRWQQDHGR------HLIDDALKVVEQA---------SLRAGPPTVHSEIVPAAAVPTLV 117
Query 117 NISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPA-RPPHAPVVVG 175
++S+ ++V+G G G G LLGSVSS L+RHAH PV +I +E P APV+VG
Sbjct 118 DMSKDAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDEDSVMPHPQQAPVLVG 177
Query 176 IDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKML 235
+DGS S LA IAFDEASRR VDLVALHAWSD+ ++P I+W + E++L
Sbjct 178 VDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPG-----IDWPATQSMAEQVL 232
Query 236 ARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRA 295
A RL+GWQ+RYP+V + +VVV D+PA +L++ ++ AQLVVVGS GRGG+ GM +GSV
Sbjct 233 AERLAGWQERYPNVAITRVVVRDQPARQLVQRSEEAQLVVVGSRGRGGYAGMLVGSVGET 292
Query 296 VVNSGQAPVIVAR 308
V + PVIVAR
Sbjct 293 VAQLARTPVIVAR 305
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/151 (30%), Positives = 63/151 (42%), Gaps = 18/151 (11%)
Query 10 IVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSRFQEAQKREI 69
++VGVDGS S A A +A RNV L + V + E+ + +
Sbjct 174 VLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS------EWPGIDWPATQSM 227
Query 70 VEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISRQVAMVVLGY 129
E L + E+ VA IT V+ Q L S + +VV+G
Sbjct 228 AEQ-VLAERLAGWQERYPNVA-----------ITRVVVRDQPARQLVQRSEEAQLVVVGS 275
Query 130 RGQGAVAGALLGSVSSSLVRHAHGPVAVIPE 160
RG+G AG L+GSV ++ + A PV V E
Sbjct 276 RGRGGYAGMLVGSVGETVAQLARTPVIVARE 306
>gi|108800587|ref|YP_640784.1| hypothetical protein Mmcs_3621 [Mycobacterium sp. MCS]
gi|119869726|ref|YP_939678.1| UspA domain-containing protein [Mycobacterium sp. KMS]
gi|108771006|gb|ABG09728.1| UspA [Mycobacterium sp. MCS]
gi|119695815|gb|ABL92888.1| UspA domain protein [Mycobacterium sp. KMS]
Length=293
Score = 225 bits (574), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 142/305 (47%), Positives = 191/305 (63%), Gaps = 26/305 (8%)
Query 9 GIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEY----SRFQEA 64
GIVVGVDGS SH AV W+AR+A MR V L +V V+ +TA A + + E+
Sbjct 8 GIVVGVDGSVGSHAAVRWSAREAVMRRVPLVLVNVLATDVTAAWAMAVPAAPLPAEYFES 67
Query 65 QKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISRQVAM 124
++++ A ++ +A VA +A A +T E++ VP L +++++ M
Sbjct 68 REQD----------ARAVLAEAETVAKDAG----AVDVTTELVQAAAVPGLVDVAKEADM 113
Query 125 VVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI-PEEPRPARPPHAPVVVGIDGSPTSG 183
+V+G RG GAV LLGSV++ L+ HA PVAVI P+ +P+ PVVVG+DGS S
Sbjct 114 LVVGTRGHGAVKRLLLGSVTTGLLHHARCPVAVIGPDADQPSET--GPVVVGVDGSRASQ 171
Query 184 LAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLSGWQ 243
A EIAF+EAS RGVDLVALH+WSD P ++WA + E+ LA L+GW
Sbjct 172 RAVEIAFEEASMRGVDLVALHSWSDRNESLHPYVDWATVR-----APAEETLAVSLAGWC 226
Query 244 DRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSGQAP 303
+RYPDV VH+ V DRP LLE +++AQL+VVGSHGRGGF GM LGSVS AVV + ++P
Sbjct 227 ERYPDVTVHRESVFDRPVEHLLERSESAQLLVVGSHGRGGFAGMLLGSVSTAVVQAARSP 286
Query 304 VIVAR 308
VIVAR
Sbjct 287 VIVAR 291
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/142 (29%), Positives = 70/142 (50%), Gaps = 5/142 (3%)
Query 169 HAPVVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAW-SDMGPLDFPRLNWAPI---EW 224
H +VVG+DGS S A + EA R V LV ++ +D+ + AP+ +
Sbjct 6 HPGIVVGVDGSVGSHAAVRWSAREAVMRRVPLVLVNVLATDVTAAWAMAVPAAPLPAEYF 65
Query 225 RNLEDEQEKMLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGF 284
+ E + +LA + +D V V +V P L+++A+ A ++VVG+ G G
Sbjct 66 ESREQDARAVLAEAETVAKDAGA-VDVTTELVQAAAVPGLVDVAKEADMLVVGTRGHGAV 124
Query 285 PGMHLGSVSRAVVNSGQAPVIV 306
+ LGSV+ +++ + PV V
Sbjct 125 KRLLLGSVTTGLLHHARCPVAV 146
>gi|240172801|ref|ZP_04751460.1| hypothetical protein MkanA1_26047 [Mycobacterium kansasii ATCC
12478]
Length=304
Score = 225 bits (574), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 152/312 (49%), Positives = 198/312 (64%), Gaps = 14/312 (4%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGW-AFEYS 59
MS++ T+ GIVVGVDGS S+ A WA R+A MRN+A+ +V PV P G E+S
Sbjct 1 MSSEITDPGIVVGVDGSTFSNAAARWAVREATMRNLAVTLVHAAAPV---PGGSPLLEWS 57
Query 60 RFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANIS 119
+ E+++ L A +++ K+ +E + R +I E+ VP L ++S
Sbjct 58 --GDPIPDELMQQ--LDGSARRVLADTIKL-VENITGDRRPRINSELTSLAPVPALVDLS 112
Query 120 RQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDGS 179
+ MVV+G RGQG V LLGSVS+ LV HAH PVAVI + PA P PV+VGIDGS
Sbjct 113 TKADMVVVGSRGQGTVKRMLLGSVSTGLVHHAHCPVAVIHNDI-PA-PREGPVLVGIDGS 170
Query 180 PTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPI---EWRNLEDEQEKMLA 236
P S A IAF+EAS RG +LVALHAW+D P W + W L+ E ++ LA
Sbjct 171 PASERATAIAFEEASWRGAELVALHAWTDAEVPGTPSREWTGLTRTSWSTLQSEADETLA 230
Query 237 RRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAV 296
RL+GW+DRYPDV V +VVV +RPA L+E +++AQLVVVGSHGRGGF GM LGSVS AV
Sbjct 231 ERLAGWRDRYPDVDVERVVVVNRPAQHLVERSESAQLVVVGSHGRGGFAGMLLGSVSTAV 290
Query 297 VNSGQAPVIVAR 308
V++ + PVIVAR
Sbjct 291 VHAVRTPVIVAR 302
>gi|126436203|ref|YP_001071894.1| UspA domain-containing protein [Mycobacterium sp. JLS]
gi|126236003|gb|ABN99403.1| UspA domain protein [Mycobacterium sp. JLS]
Length=293
Score = 225 bits (573), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 143/303 (48%), Positives = 188/303 (63%), Gaps = 22/303 (7%)
Query 9 GIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSRF--QEAQK 66
GIVVGVDGS SH AV W+AR+A MR V L +V V+ +TA A + Q +
Sbjct 8 GIVVGVDGSVGSHAAVRWSAREAVMRRVPLVLVNVLATDVTAAWAMAVPAAPLPAQYFES 67
Query 67 REIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISRQVAMVV 126
RE A ++ +A VA +A A +T E++ VP L +++++ M+V
Sbjct 68 RE--------QDARAVLAEAETVAKDAG----AVDVTTELVQAAAVPGLVDVAKEADMLV 115
Query 127 LGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI-PEEPRPARPPHAPVVVGIDGSPTSGLA 185
+G RG GAV LLGSV++ L+ H+ PVAVI P+ +P+ PVVVG+DGS S A
Sbjct 116 VGTRGHGAVKRLLLGSVTTGLLHHSRCPVAVIGPDADQPSET--GPVVVGVDGSRASQRA 173
Query 186 AEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRLSGWQDR 245
EIAF+EAS RGVDLVALH+WSD P ++WA + E+ LA L+GW +R
Sbjct 174 VEIAFEEASMRGVDLVALHSWSDRNESLHPYVDWATVR-----APAEETLAVSLAGWCER 228
Query 246 YPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNSGQAPVI 305
YPDV VH+ V DRP LLE +++AQL+VVGSHGRGGF GM LGSVS AVV + ++PVI
Sbjct 229 YPDVTVHRESVFDRPVEHLLERSESAQLLVVGSHGRGGFAGMLLGSVSTAVVQAARSPVI 288
Query 306 VAR 308
VAR
Sbjct 289 VAR 291
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/142 (29%), Positives = 70/142 (50%), Gaps = 5/142 (3%)
Query 169 HAPVVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAW-SDMGPLDFPRLNWAPIEWRNL 227
H +VVG+DGS S A + EA R V LV ++ +D+ + AP+ +
Sbjct 6 HPGIVVGVDGSVGSHAAVRWSAREAVMRRVPLVLVNVLATDVTAAWAMAVPAAPLPAQYF 65
Query 228 EDEQEK---MLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGF 284
E ++ +LA + +D V V +V P L+++A+ A ++VVG+ G G
Sbjct 66 ESREQDARAVLAEAETVAKDAGA-VDVTTELVQAAAVPGLVDVAKEADMLVVGTRGHGAV 124
Query 285 PGMHLGSVSRAVVNSGQAPVIV 306
+ LGSV+ +++ + PV V
Sbjct 125 KRLLLGSVTTGLLHHSRCPVAV 146
>gi|108798069|ref|YP_638266.1| hypothetical protein Mmcs_1097 [Mycobacterium sp. MCS]
gi|119867165|ref|YP_937117.1| UspA domain-containing protein [Mycobacterium sp. KMS]
gi|108768488|gb|ABG07210.1| UspA [Mycobacterium sp. MCS]
gi|119693254|gb|ABL90327.1| UspA domain protein [Mycobacterium sp. KMS]
Length=294
Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 147/311 (48%), Positives = 177/311 (57%), Gaps = 22/311 (7%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPV-ITAPEGWAFEYS 59
MS GIVVGVDGSP S A+ WAA +AQ + ++ VV P+ I+ P E
Sbjct 1 MSGSTPRYGIVVGVDGSPESQVALRWAATEAQTSGRPVTLINVVTPIAISWPTIMLQEQI 60
Query 60 RFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANIS 119
E Q A +++ A + L+ G + EVL IV L S
Sbjct 61 SAYEKQN------------AEEVLGHARQTLLDGLGPGPQPAVHSEVLMAGIVEALVEAS 108
Query 120 RQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPP--HAPVVVGID 177
+ MVV+G RG+GAV LLGSVS+ L+ HAH PVAVI R R P APVVVGID
Sbjct 109 KDAHMVVVGARGRGAVRRVLLGSVSAGLIHHAHCPVAVI--HSRDGRLPTADAPVVVGID 166
Query 178 GSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLAR 237
GSP S A +AFDEASRRG +LVA+H WSDM P+ A + E E+ LA
Sbjct 167 GSPASEAATALAFDEASRRGAELVAVHVWSDMAPIPG-----AATDRHQCEQRAEETLAE 221
Query 238 RLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVV 297
RL+GWQ+RYPDV +VV DRPA L+E + AQLVV+GSHGRGGF GM LGSVS AV
Sbjct 222 RLAGWQERYPDVRTRRVVESDRPARWLVEHSADAQLVVLGSHGRGGFAGMLLGSVSAAVA 281
Query 298 NSGQAPVIVAR 308
S PVIV R
Sbjct 282 QSVDVPVIVVR 292
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 42/152 (28%), Positives = 61/152 (41%), Gaps = 18/152 (11%)
Query 10 IVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSRFQEAQKREI 69
+VVG+DGSP S A A +A R L V V + P R Q Q+ E
Sbjct 161 VVVGIDGSPASEAATALAFDEASRRGAELVAVHVWSDMAPIP---GAATDRHQCEQRAEE 217
Query 70 VEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISRQVAMVVLGY 129
L + + + +E+ R L S +VVLG
Sbjct 218 TLAERLAGWQERYPDVRTRRVVESDRPAR---------------WLVEHSADAQLVVLGS 262
Query 130 RGQGAVAGALLGSVSSSLVRHAHGPVAVIPEE 161
G+G AG LLGSVS+++ + PV V+ ++
Sbjct 263 HGRGGFAGMLLGSVSAAVAQSVDVPVIVVRQQ 294
>gi|240170451|ref|ZP_04749110.1| hypothetical protein MkanA1_14155 [Mycobacterium kansasii ATCC
12478]
Length=303
Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/309 (47%), Positives = 188/309 (61%), Gaps = 14/309 (4%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR 60
MS ++ GIVVGVDGSP S AV WAARDA++RNV L + V+P A G S
Sbjct 1 MSKIDSHRGIVVGVDGSPGSQAAVRWAARDAELRNVPLTLAHVLP----AAAGTRLASS- 55
Query 61 FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR 120
+ R ++ Q++++A K+A E+ G +QI E+ G V TLA +S
Sbjct 56 VASGRTRSRID------AGQQLLDEALKIAEESCERG-LSQIYREMASGTTVSTLAKLSE 108
Query 121 QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEE-PRPARPPHAPVVVGIDGS 179
+VV G RG G++ G LGSVSS L+ A PVAVI ++ P A APV+VGIDGS
Sbjct 109 DAHLVVAGCRGAGSLRGRHLGSVSSGLIHDARCPVAVIHDDVPMAADSERAPVLVGIDGS 168
Query 180 PTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRL 239
P S +A IAFD ASRR VDLVA+HAW G LD P ++ W L ++K++A RL
Sbjct 169 PESEVAIAIAFDAASRRKVDLVAVHAWKAPGVLD-PIVSLPGPGWPELRTHEDKIVAERL 227
Query 240 SGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNS 299
+GW ++YPDVVV +++ + AP L+ +++AQLVVVGS G GGF GM GSVS AVV
Sbjct 228 AGWGEQYPDVVVRRMIARNDAAPALVGTSKSAQLVVVGSRGSGGFAGMLFGSVSAAVVLL 287
Query 300 GQAPVIVAR 308
PVIVAR
Sbjct 288 SHVPVIVAR 296
>gi|254775151|ref|ZP_05216667.1| hypothetical protein MaviaA2_10836 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=294
Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 150/312 (49%), Positives = 194/312 (63%), Gaps = 21/312 (6%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVV--PPVITAPEGWAFEY 58
MSA LGI V VDGSP S+ A WAAR+A MR+ L +V V P + P +
Sbjct 1 MSAPVQQLGIAVAVDGSPASNAAAYWAAREAAMRHCPLTIVHAVSTPTTMYPPVPYPEAL 60
Query 59 SRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANI 118
+ E + ++ + H A K+A EA + R I ++L+ VP L +
Sbjct 61 ATNLEDEGKQAILH-------------ATKIAEEAMPADRQVPIGRKLLYSAPVPALLEL 107
Query 119 SRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDG 178
S V M+VLG G G +A LLGSVSS++VRHA+ PVAV+ +E P P APV++G DG
Sbjct 108 SGAVRMLVLGSAGHGLLARGLLGSVSSAVVRHANCPVAVVRDEELP-DPHSAPVLLGTDG 166
Query 179 SPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARR 238
SP S LA EIAFDEASRRGVDLVA+HAWSD + ++W PI +E E E+ LA
Sbjct 167 SPASELATEIAFDEASRRGVDLVAIHAWSDTAVTEVFEIDW-PI----VEAEAERHLAES 221
Query 239 LSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVN 298
L+GWQ+RYPDV VH++V DR A ++ ++TAQLVVVGSHGRGG + LGSVS AV++
Sbjct 222 LAGWQERYPDVTVHRLVARDRAAQHIISSSETAQLVVVGSHGRGGLARLLLGSVSNAVLH 281
Query 299 SGQAPVIVARIP 310
S + PVIVAR P
Sbjct 282 SVRVPVIVARPP 293
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/145 (34%), Positives = 71/145 (49%), Gaps = 4/145 (2%)
Query 172 VVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQ 231
+ V +DGSP S AA A EA+ R L +HA S + +P + + NLEDE
Sbjct 10 IAVAVDGSPASNAAAYWAAREAAMRHCPLTIVHAVSTPTTM-YPPVPYPEALATNLEDEG 68
Query 232 EKMLARRLSGWQDRYP---DVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMH 288
++ + ++ P V + + ++ P P LLEL+ +++V+GS G G
Sbjct 69 KQAILHATKIAEEAMPADRQVPIGRKLLYSAPVPALLELSGAVRMLVLGSAGHGLLARGL 128
Query 289 LGSVSRAVVNSGQAPVIVARIPQDP 313
LGSVS AVV PV V R + P
Sbjct 129 LGSVSSAVVRHANCPVAVVRDEELP 153
>gi|162329900|pdb|2JAX|A Chain A, Universal Stress Protein Rv2623 From Mycobaterium Tuberculosis
Length=305
Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 140/316 (45%), Positives = 190/316 (61%), Gaps = 33/316 (10%)
Query 2 SAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITA------PEGWA 55
S+ ++LGI+VG+D SP + AV WAARDA++R + L +V V P + P G
Sbjct 2 SSGNSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPG-- 59
Query 56 FEYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAA--QITGEVLHGQIVP 113
R+Q+ R +L+ A ++VEQA S RA + E++ VP
Sbjct 60 --VLRWQQDHGR------HLIDDALKVVEQA---------SLRAGPPTVHSEIVPAAAVP 102
Query 114 TLANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPA-RPPHAPV 172
TL + S+ + V+G G G G LLGSVSS L+RHAH PV +I +E P APV
Sbjct 103 TLVDXSKDAVLXVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDEDSVXPHPQQAPV 162
Query 173 VVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQE 232
+VG+DGS S LA IAFDEASRR VDLVALHAWSD+ ++P I+W + E
Sbjct 163 LVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPG-----IDWPATQSXAE 217
Query 233 KMLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSV 292
++LA RL+GWQ+RYP+V + +VVV D+PA +L++ ++ AQLVVVGS GRGG+ G +GSV
Sbjct 218 QVLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSEEAQLVVVGSRGRGGYAGXLVGSV 277
Query 293 SRAVVNSGQAPVIVAR 308
V + PVIVAR
Sbjct 278 GETVAQLARTPVIVAR 293
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/151 (30%), Positives = 65/151 (44%), Gaps = 18/151 (11%)
Query 10 IVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSRFQEAQKREI 69
++VGVDGS S A A +A RNV L + V + E ++ Q ++ +
Sbjct 162 VLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS-EWPGIDWPATQSXAEQVL 220
Query 70 VEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISRQVAMVVLGY 129
E + E+ VA IT V+ Q L S + +VV+G
Sbjct 221 AE------RLAGWQERYPNVA-----------ITRVVVRDQPARQLVQRSEEAQLVVVGS 263
Query 130 RGQGAVAGALLGSVSSSLVRHAHGPVAVIPE 160
RG+G AG L+GSV ++ + A PV V E
Sbjct 264 RGRGGYAGXLVGSVGETVAQLARTPVIVARE 294
>gi|120402959|ref|YP_952788.1| UspA domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119955777|gb|ABM12782.1| UspA domain protein [Mycobacterium vanbaalenii PYR-1]
Length=294
Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 153/309 (50%), Positives = 187/309 (61%), Gaps = 17/309 (5%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAFEYSR 60
MS Q +GIVV VDGS S AV+WAARDA MR + L + V+P T +
Sbjct 1 MSTQPAPVGIVVAVDGSDASRVAVDWAARDAAMRRIPLTLAHVLPSAATQSWIQVPLPAA 60
Query 61 FQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANISR 120
F E +K E A +I+ A + A+ G A + VL GQ V L ++++
Sbjct 61 FFEDEKLE----------AERILADARALVTAATEGGEALTVDEVVLSGQPVAALVDLAK 110
Query 121 QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPE-EPRPARPPHAPVVVGIDGS 179
M+V+G RG G LLGSVSS +V HAH PVAVI + +P P APVVVG+DGS
Sbjct 111 DAEMLVMGSRGLGKWERRLLGSVSSGVVHHAHCPVAVIHDVDPLIPHPAQAPVVVGVDGS 170
Query 180 PTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARRL 239
P S A IAFDEAS RGVDLVA+H WSD G + P WA I+ E++ +LA RL
Sbjct 171 PASEHATAIAFDEASFRGVDLVAVHTWSDAG-YELPGTGWAEIQ-----PEEDMLLAERL 224
Query 240 SGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVNS 299
+GWQ+RYPDV VH+VV D+PA RLLE A QL+VVGSHGRGGF GM LGSV VV S
Sbjct 225 AGWQERYPDVTVHRVVCRDQPARRLLEEAAKGQLLVVGSHGRGGFGGMLLGSVGSQVVQS 284
Query 300 GQAPVIVAR 308
+ PVIVAR
Sbjct 285 ARGPVIVAR 293
>gi|296169639|ref|ZP_06851257.1| universal stress protein family protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895636|gb|EFG75332.1| universal stress protein family protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=304
Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 147/318 (47%), Positives = 189/318 (60%), Gaps = 26/318 (8%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEG-----WA 55
M ++ N GIVV +DGSP S+ A+ WAAR+A MR VAL + P +P G W
Sbjct 1 MVSETGNPGIVVAIDGSPDSNEAIRWAAREATMRKVALTLAHAAAP---SPGGAPVLEWT 57
Query 56 FEYS--RFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVP 113
E + F+E R + +I+ A K+ + ++ EV+ VP
Sbjct 58 GESAPAEFREQLGRSV----------ERILADAAKIVESTTDEDSRPRVNNEVITDAPVP 107
Query 114 TLANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVV 173
L +S + MVV+G RG GA+ LLGSVS+ LV HAH PVAVI EP P V+
Sbjct 108 ALVELSTKADMVVVGSRGHGALERVLLGSVSTGLVHHAHCPVAVIRNEPSPR---EGCVL 164
Query 174 VGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPI---EWRNLEDE 230
VG+DGSP S LA IAFDEAS RG +LVAL+AW+D D P W W L+ E
Sbjct 165 VGVDGSPVSELATAIAFDEASWRGAELVALYAWTDAELPDIPMREWTGTTRTSWTALQSE 224
Query 231 QEKMLARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLG 290
E+ LA RL+G++ R PDVVV + VV +RPA L+E +++AQLVVVGSHGRGGF GM LG
Sbjct 225 AEETLAERLAGYRQRCPDVVVRREVVVNRPAQHLVEGSESAQLVVVGSHGRGGFAGMLLG 284
Query 291 SVSRAVVNSGQAPVIVAR 308
SVS AVV++ + PVIVAR
Sbjct 285 SVSTAVVHAVRTPVIVAR 302
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 73/150 (49%), Gaps = 9/150 (6%)
Query 172 VVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNW----APIEWRN- 226
+VV IDGSP S A A EA+ R V L HA + P P L W AP E+R
Sbjct 10 IVVAIDGSPDSNEAIRWAAREATMRKVALTLAHA-AAPSPGGAPVLEWTGESAPAEFREQ 68
Query 227 LEDEQEKMLA---RRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGG 283
L E++LA + + D V+ V+ D P P L+EL+ A +VVVGS G G
Sbjct 69 LGRSVERILADAAKIVESTTDEDSRPRVNNEVITDAPVPALVELSTKADMVVVGSRGHGA 128
Query 284 FPGMHLGSVSRAVVNSGQAPVIVARIPQDP 313
+ LGSVS +V+ PV V R P
Sbjct 129 LERVLLGSVSTGLVHHAHCPVAVIRNEPSP 158
>gi|126433730|ref|YP_001069421.1| UspA domain-containing protein [Mycobacterium sp. JLS]
gi|126233530|gb|ABN96930.1| UspA domain protein [Mycobacterium sp. JLS]
Length=294
Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 146/311 (47%), Positives = 177/311 (57%), Gaps = 22/311 (7%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPV-ITAPEGWAFEYS 59
MS GIVVGVDGSP S A+ WAA +AQ + ++ VV P+ I+ P E
Sbjct 1 MSGSTPRYGIVVGVDGSPESQVALRWAATEAQTSGRPVTLINVVTPIAISWPTIMLQEQI 60
Query 60 RFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANIS 119
E Q A +++ A + L+ G + EVL IV L S
Sbjct 61 STYEKQN------------AEEVLGHARQTLLDGLGPGPQPAVHSEVLMAGIVEALVEAS 108
Query 120 RQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPP--HAPVVVGID 177
+ MVV+G RG+GAV LLGSVS+ L+ HAH PVAVI R R P APVVVGID
Sbjct 109 KDAHMVVVGARGRGAVRRVLLGSVSAGLIHHAHCPVAVI--HSRDGRLPTADAPVVVGID 166
Query 178 GSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLAR 237
GSP S A +AF+EASRRG +LVA+H WSDM P+ A + E E+ LA
Sbjct 167 GSPASEAATALAFEEASRRGAELVAVHVWSDMAPIPG-----AATDRHQCEQRAEETLAE 221
Query 238 RLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVV 297
RL+GWQ+RYPDV +VV DRPA L+E + AQLVV+GSHGRGGF GM LGSVS AV
Sbjct 222 RLAGWQERYPDVRTRRVVESDRPARWLVEHSADAQLVVLGSHGRGGFAGMLLGSVSAAVA 281
Query 298 NSGQAPVIVAR 308
S PVIV R
Sbjct 282 QSVDVPVIVVR 292
>gi|41407852|ref|NP_960688.1| hypothetical protein MAP1754c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396206|gb|AAS04071.1| hypothetical protein MAP_1754c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336457368|gb|EGO36379.1| universal stress protein UspA-like protein [Mycobacterium avium
subsp. paratuberculosis S397]
Length=294
Score = 222 bits (565), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 149/312 (48%), Positives = 194/312 (63%), Gaps = 21/312 (6%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVV--PPVITAPEGWAFEY 58
MSA LGI V VDGSP S+ A WAAR+A MR+ L +V V P + P +
Sbjct 1 MSAPVQQLGIAVAVDGSPASNAAAYWAAREAAMRHCPLTIVHAVSTPTTMYPPVPYPEAL 60
Query 59 SRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANI 118
+ E + ++ + H A K+A EA + R I ++L+ VP L +
Sbjct 61 ATNLEDEGKQAILH-------------ATKIAEEAMPADRQVPIGRKLLYSAPVPALLEL 107
Query 119 SRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVGIDG 178
S V M+VLG G G +A LLGSVSS++VRHA+ PVAV+ +E P P APV++G DG
Sbjct 108 SGAVRMLVLGSAGHGLLARGLLGSVSSAVVRHANCPVAVVRDEELP-DPHSAPVLLGTDG 166
Query 179 SPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKMLARR 238
SP S LA EIAFDEASRRGVDLVA+HAWSD + ++W PI +E E E+ LA
Sbjct 167 SPASELATEIAFDEASRRGVDLVAIHAWSDTAVTEVFEIDW-PI----VEAEAERHLAES 221
Query 239 LSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRAVVN 298
L+GW++RYPDV VH++V DR A ++ ++TAQLVVVGSHGRGG + LGSVS AV++
Sbjct 222 LAGWRERYPDVTVHRLVARDRAAQHIISSSETAQLVVVGSHGRGGLARLLLGSVSNAVLH 281
Query 299 SGQAPVIVARIP 310
S + PVIVAR P
Sbjct 282 SVRVPVIVARPP 293
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/145 (34%), Positives = 71/145 (49%), Gaps = 4/145 (2%)
Query 172 VVVGIDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQ 231
+ V +DGSP S AA A EA+ R L +HA S + +P + + NLEDE
Sbjct 10 IAVAVDGSPASNAAAYWAAREAAMRHCPLTIVHAVSTPTTM-YPPVPYPEALATNLEDEG 68
Query 232 EKMLARRLSGWQDRYP---DVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMH 288
++ + ++ P V + + ++ P P LLEL+ +++V+GS G G
Sbjct 69 KQAILHATKIAEEAMPADRQVPIGRKLLYSAPVPALLELSGAVRMLVLGSAGHGLLARGL 128
Query 289 LGSVSRAVVNSGQAPVIVARIPQDP 313
LGSVS AVV PV V R + P
Sbjct 129 LGSVSSAVVRHANCPVAVVRDEELP 153
>gi|296169051|ref|ZP_06850712.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896279|gb|EFG75939.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=295
Score = 221 bits (564), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 149/313 (48%), Positives = 197/313 (63%), Gaps = 25/313 (7%)
Query 1 MSAQQTNLGIVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITAPEGWAF---- 56
MS ++T+ GI+VGVD S S AV WAARDA +RNV L ++ V+ PV+ A W
Sbjct 1 MSERETHRGIMVGVDRSASSMAAVAWAARDAAIRNVPLTLMHVIAPVVPAVAPWPAIPIP 60
Query 57 -EYSRFQEAQKREIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTL 115
+Y Q+ + R QI+E A +V ++++ + V+ G V TL
Sbjct 61 QDYFERQDEKAR-------------QILEDARQVVADSTADHGPPFVYSVVVRGPTVSTL 107
Query 116 ANISRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVIPEEPRPARPPHAPVVVG 175
N S+ M+V+GYRG+GA + GS S+ LV +AH PVAV+ +E P P APV+VG
Sbjct 108 VNESKIADMMVVGYRGEGAFSRVPFGSASTGLVNYAHCPVAVVHDEAPPR--PQAPVLVG 165
Query 176 IDGSPTSGLAAEIAFDEASRRGVDLVALHAWSDMGPLDFPRLNWAPIEWRNLEDEQEKML 235
IDGS S AEIAF+EASRRGV+LVALHAWSD+ + P L+ +E R E L
Sbjct 166 IDGSAASKRVAEIAFEEASRRGVELVALHAWSDVSVSEVPGLDLEMMEVRARES-----L 220
Query 236 ARRLSGWQDRYPDVVVHKVVVCDRPAPRLLELAQTAQLVVVGSHGRGGFPGMHLGSVSRA 295
A L+G Q+RYPDV V VVVCD+PA +L+E +++AQLVVVGSHGRGGF GM LGSVS A
Sbjct 221 AEWLAGLQERYPDVGVRPVVVCDQPARQLIEHSESAQLVVVGSHGRGGFAGMLLGSVSTA 280
Query 296 VVNSGQAPVIVAR 308
V ++ Q+ VIV+R
Sbjct 281 VAHAAQSVVIVSR 293
Lambda K H
0.318 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 552325845108
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40