BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2009

Length=80
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609146|ref|NP_216525.1|  hypothetical protein Rv2009 [Mycoba...   156    1e-36
gi|31793189|ref|NP_855682.1|  hypothetical protein Mb2032 [Mycoba...   154    6e-36
gi|167970462|ref|ZP_02552739.1|  hypothetical protein MtubH3_2149...   145    1e-33
gi|15608698|ref|NP_216076.1|  hypothetical protein Rv1560 [Mycoba...  71.2    5e-11
gi|289761723|ref|ZP_06521101.1|  conserved hypothetical protein [...  67.8    5e-10
gi|167967386|ref|ZP_02549663.1|  hypothetical protein MtubH3_0485...  67.8    5e-10
gi|333989208|ref|YP_004521822.1|  hypothetical protein JDM601_056...  66.2    1e-09
gi|297563900|ref|YP_003682873.1|  Protein of unknown function DUF...  62.4    2e-08
gi|284990201|ref|YP_003408755.1|  hypothetical protein Gobs_1668 ...  56.6    1e-06
gi|296166367|ref|ZP_06848802.1|  toxin-antitoxin system [Mycobact...  53.5    1e-05
gi|336179604|ref|YP_004584979.1|  hypothetical protein FsymDg_378...  52.4    2e-05
gi|159184572|ref|NP_354029.2|  hypothetical protein Atu1005 [Agro...  44.3    0.007
gi|289760758|ref|ZP_06520136.1|  conserved hypothetical protein [...  41.2    0.049
gi|15840036|ref|NP_335073.1|  hypothetical protein MT0662.1 [Myco...  41.2    0.051
gi|340625652|ref|YP_004744104.1|  hypothetical protein MCAN_06321...  40.8    0.064
gi|88811565|ref|ZP_01126819.1|  hypothetical protein NB231_04150 ...  40.8    0.065
gi|167969063|ref|ZP_02551340.1|  hypothetical protein MtubH3_1395...  40.4    0.077
gi|118616508|ref|YP_904840.1|  hypothetical protein MUL_0716 [Myc...  39.7    0.13 
gi|15828026|ref|NP_302289.1|  hypothetical protein ML1911A [Mycob...  39.7    0.15 
gi|183980986|ref|YP_001849277.1|  hypothetical protein MMAR_0966 ...  39.7    0.16 
gi|284038009|ref|YP_003387939.1|  hypothetical protein Slin_3129 ...  39.7    0.17 
gi|254231784|ref|ZP_04925111.1|  conserved hypothetical protein [...  39.3    0.18 
gi|325292386|ref|YP_004278250.1|  hypothetical protein AGROH133_0...  39.3    0.19 
gi|320105489|ref|YP_004181079.1|  hypothetical protein AciPR4_024...  39.3    0.19 
gi|335034130|ref|ZP_08527491.1|  hypothetical protein AGRO_1470 [...  38.9    0.24 
gi|258592452|emb|CBE68761.1|  conserved protein of unknown functi...  38.9    0.26 
gi|327190277|gb|EGE57377.1|  hypothetical protein RHECNPAF_439009...  37.7    0.50 
gi|217979807|ref|YP_002363954.1|  hypothetical protein Msil_3709 ...  37.7    0.60 
gi|337281344|ref|YP_004620816.1|  hypothetical protein Rta_36810 ...  37.4    0.77 
gi|115524558|ref|YP_781469.1|  hypothetical protein RPE_2551 [Rho...  37.0    0.94 
gi|299135986|ref|ZP_07029170.1|  Protein of unknown function DUF2...  36.6    1.1  
gi|218661252|ref|ZP_03517182.1|  hypothetical protein RetlI_17778...  36.6    1.1  
gi|313672675|ref|YP_004050786.1|  hypothetical protein Calni_0712...  36.6    1.2  
gi|304318060|ref|YP_003853205.1|  hypothetical protein Tthe_2672 ...  36.6    1.3  
gi|345013747|ref|YP_004816101.1|  hypothetical protein Strvi_6366...  36.6    1.4  
gi|297154825|gb|ADI04537.1|  hypothetical protein SBI_01416 [Stre...  36.2    1.5  
gi|345302429|ref|YP_004824331.1|  hypothetical protein Rhom172_05...  36.2    1.5  
gi|206889882|ref|YP_002249459.1|  hypothetical protein THEYE_A166...  36.2    1.8  
gi|240169407|ref|ZP_04748066.1|  hypothetical protein MkanA1_0884...  35.8    2.2  
gi|333992735|ref|YP_004525349.1|  hypothetical protein JDM601_409...  35.8    2.3  
gi|268316119|ref|YP_003289838.1|  hypothetical protein Rmar_0549 ...  35.0    3.4  
gi|296137154|ref|YP_003644396.1|  Protein of unknown function DUF...  34.7    5.0  
gi|88813609|ref|ZP_01128840.1|  hypothetical protein NB231_12876 ...  34.7    5.2  
gi|294341452|emb|CAZ89869.1|  hypothetical protein THI_3273 [Thio...  34.7    5.4  
gi|163759143|ref|ZP_02166229.1|  hypothetical protein HPDFL43_052...  34.3    5.5  
gi|77165011|ref|YP_343536.1|  hypothetical protein Noc_1521 [Nitr...  34.3    6.0  
gi|338533812|ref|YP_004667146.1|  excinuclease ABC subunit B [Myx...  33.9    8.1  


>gi|15609146|ref|NP_216525.1| hypothetical protein Rv2009 [Mycobacterium tuberculosis H37Rv]
 gi|15841491|ref|NP_336528.1| hypothetical protein MT2064.1 [Mycobacterium tuberculosis CDC1551]
 gi|148661823|ref|YP_001283346.1| hypothetical protein MRA_2025 [Mycobacterium tuberculosis H37Ra]
 44 more sequence titles
 Length=80

 Score =  156 bits (394),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 79/80 (99%), Positives = 80/80 (100%), Gaps = 0/80 (0%)

Query  1   VYSGVVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFD  60
           +YSGVVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFD
Sbjct  1   MYSGVVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFD  60

Query  61  FSNDEIESFSDTDRKLADES  80
           FSNDEIESFSDTDRKLADES
Sbjct  61  FSNDEIESFSDTDRKLADES  80


>gi|31793189|ref|NP_855682.1| hypothetical protein Mb2032 [Mycobacterium bovis AF2122/97]
 gi|121637893|ref|YP_978116.1| hypothetical protein BCG_2026 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|224990387|ref|YP_002645074.1| hypothetical protein JTY_2021 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|31618781|emb|CAD96885.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493540|emb|CAL72014.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224773500|dbj|BAH26306.1| hypothetical protein JTY_2021 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341601930|emb|CCC64604.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=80

 Score =  154 bits (388),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 78/80 (98%), Positives = 80/80 (100%), Gaps = 0/80 (0%)

Query  1   VYSGVVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFD  60
           +YSGVVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFD
Sbjct  1   MYSGVVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFD  60

Query  61  FSNDEIESFSDTDRKLADES  80
           FS+DEIESFSDTDRKLADES
Sbjct  61  FSDDEIESFSDTDRKLADES  80


>gi|167970462|ref|ZP_02552739.1| hypothetical protein MtubH3_21498 [Mycobacterium tuberculosis 
H37Ra]
 gi|254551032|ref|ZP_05141479.1| antitoxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|308232003|ref|ZP_07414583.2| antitoxin [Mycobacterium tuberculosis SUMu001]
 23 more sequence titles
 Length=75

 Score =  145 bits (367),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 74/75 (99%), Positives = 75/75 (100%), Gaps = 0/75 (0%)

Query  6   VSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSNDE  65
           +SRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSNDE
Sbjct  1   MSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSNDE  60

Query  66  IESFSDTDRKLADES  80
           IESFSDTDRKLADES
Sbjct  61  IESFSDTDRKLADES  75


>gi|15608698|ref|NP_216076.1| hypothetical protein Rv1560 [Mycobacterium tuberculosis H37Rv]
 gi|15841027|ref|NP_336064.1| hypothetical protein MT1611 [Mycobacterium tuberculosis CDC1551]
 gi|31792745|ref|NP_855238.1| hypothetical protein Mb1586 [Mycobacterium bovis AF2122/97]
 72 more sequence titles
 Length=72

 Score = 71.2 bits (173),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 36/68 (53%), Positives = 48/68 (71%), Gaps = 0/68 (0%)

Query  1   VYSGVVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFD  60
           +Y   +SRTNI+IDDEL A   R + L +KR+AVDLALRRLVG PL R+  L L+G G++
Sbjct  1   MYRWCMSRTNIDIDDELAAEVMRRFGLTTKRAAVDLALRRLVGSPLSREFLLGLEGVGWE  60

Query  61  FSNDEIES  68
              D++ S
Sbjct  61  GDLDDLRS  68


>gi|289761723|ref|ZP_06521101.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289709229|gb|EFD73245.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
Length=72

 Score = 67.8 bits (164),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 35/68 (52%), Positives = 47/68 (70%), Gaps = 0/68 (0%)

Query  1   VYSGVVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFD  60
           +Y   +SRTNI+IDDEL A   R + L +KR+AVDLALRRLV  PL R+  L L+G G++
Sbjct  1   MYRWCMSRTNIDIDDELAAEVMRRFGLTTKRAAVDLALRRLVRSPLSREFLLGLEGVGWE  60

Query  61  FSNDEIES  68
              D++ S
Sbjct  61  GDLDDLRS  68


>gi|167967386|ref|ZP_02549663.1| hypothetical protein MtubH3_04852 [Mycobacterium tuberculosis 
H37Ra]
 gi|254550580|ref|ZP_05141027.1| antitoxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=67

 Score = 67.8 bits (164),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 35/63 (56%), Positives = 46/63 (74%), Gaps = 0/63 (0%)

Query  6   VSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSNDE  65
           +SRTNI+IDDEL A   R + L +KR+AVDLALRRLVG PL R+  L L+G G++   D+
Sbjct  1   MSRTNIDIDDELAAEVMRRFGLTTKRAAVDLALRRLVGSPLSREFLLGLEGVGWEGDLDD  60

Query  66  IES  68
           + S
Sbjct  61  LRS  63


>gi|333989208|ref|YP_004521822.1| hypothetical protein JDM601_0568 [Mycobacterium sp. JDM601]
 gi|333485176|gb|AEF34568.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=70

 Score = 66.2 bits (160),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 34/63 (54%), Positives = 45/63 (72%), Gaps = 0/63 (0%)

Query  6   VSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSNDE  65
           ++RTNIEIDDEL A   R + + +K++AVDLALRRLVG PL R+  L L+G G+    DE
Sbjct  1   MARTNIEIDDELTAEVMRRFGVTTKKAAVDLALRRLVGAPLTREFLLGLEGIGWAGDLDE  60

Query  66  IES  68
           + S
Sbjct  61  LRS  63


>gi|297563900|ref|YP_003682873.1| Protein of unknown function DUF2191 [Nocardiopsis dassonvillei 
subsp. dassonvillei DSM 43111]
 gi|296848349|gb|ADH70367.1| Protein of unknown function DUF2191 [Nocardiopsis dassonvillei 
subsp. dassonvillei DSM 43111]
Length=73

 Score = 62.4 bits (150),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 29/55 (53%), Positives = 42/55 (77%), Gaps = 0/55 (0%)

Query  6   VSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFD  60
           +SRTNI+IDDELV  A   +++ +KR AVD+ALRR VG PL ++  L+L+G G++
Sbjct  1   MSRTNIDIDDELVTTAMERFQVSTKREAVDIALRRAVGTPLTKEFLLSLEGIGWE  55


>gi|284990201|ref|YP_003408755.1| hypothetical protein Gobs_1668 [Geodermatophilus obscurus DSM 
43160]
 gi|284063446|gb|ADB74384.1| Protein of unknown function DUF2191 [Geodermatophilus obscurus 
DSM 43160]
Length=81

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 28/59 (48%), Positives = 40/59 (68%), Gaps = 0/59 (0%)

Query  1   VYSGVVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGF  59
           +Y   VSRTNI+IDD+L+A   R Y L +K+ AVD ALR++   P+   E  A++GSG+
Sbjct  1   MYGRCVSRTNIDIDDDLIAGVMRRYGLATKKDAVDFALRQVSVVPMTAREMHAMRGSGW  59


>gi|296166367|ref|ZP_06848802.1| toxin-antitoxin system [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898277|gb|EFG77848.1| toxin-antitoxin system [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=70

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 25/49 (52%), Positives = 34/49 (70%), Gaps = 0/49 (0%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQG  56
           RTNIE++D  +      Y + +K  AVDLALR L G+P+ RDEALA++G
Sbjct  5   RTNIELEDTYIQTIMDRYGVRTKTEAVDLALRHLAGQPMTRDEALAMRG  53


>gi|336179604|ref|YP_004584979.1| hypothetical protein FsymDg_3781 [Frankia symbiont of Datisca 
glomerata]
 gi|334860584|gb|AEH11058.1| Protein of unknown function DUF2191 [Frankia symbiont of Datisca 
glomerata]
Length=102

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 25/59 (43%), Positives = 40/59 (68%), Gaps = 0/59 (0%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSNDEI  66
           R +I +DDEL+  A R++ ++++R  VDLALR L+G    R  ALA++G+G+D    E+
Sbjct  7   RASIAVDDELIEEAMRLFGVNTRREIVDLALRHLIGRADFRRRALAMEGTGWDTDMTEL  65


>gi|159184572|ref|NP_354029.2| hypothetical protein Atu1005 [Agrobacterium tumefaciens str. 
C58]
 gi|159139876|gb|AAK86814.2| conserved hypothetical protein [Agrobacterium tumefaciens str. 
C58]
Length=76

 Score = 44.3 bits (103),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 28/60 (47%), Positives = 40/60 (67%), Gaps = 2/60 (3%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALA-LQGSGFDFSNDEI  66
           RTNIE+DD L+A A  +  L +K++ V+ ALR LV E LGR +AL  L+G G+    +E+
Sbjct  2   RTNIELDDALIAEAMEITGLPTKKATVEKALRDLV-ENLGRRKALQELRGIGWKGDLEEV  60


>gi|289760758|ref|ZP_06520136.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289708264|gb|EFD72280.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
Length=94

 Score = 41.2 bits (95),  Expect = 0.049, Method: Compositional matrix adjust.
 Identities = 19/40 (48%), Positives = 27/40 (68%), Gaps = 0/40 (0%)

Query  5   VVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGE  44
           ++ R  IE+DD+L+    R YR+   R AV+LALR L+GE
Sbjct  14  MLKRVEIEVDDDLIQKVIRRYRVKGAREAVNLALRTLLGE  53


>gi|15840036|ref|NP_335073.1| hypothetical protein MT0662.1 [Mycobacterium tuberculosis CDC1551]
 gi|31791817|ref|NP_854310.1| hypothetical protein Mb0652 [Mycobacterium bovis AF2122/97]
 gi|57116763|ref|YP_177629.1| hypothetical protein Rv0634A [Mycobacterium tuberculosis H37Rv]
 40 more sequence titles
 Length=83

 Score = 41.2 bits (95),  Expect = 0.051, Method: Compositional matrix adjust.
 Identities = 19/40 (48%), Positives = 27/40 (68%), Gaps = 0/40 (0%)

Query  5   VVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGE  44
           ++ R  IE+DD+L+    R YR+   R AV+LALR L+GE
Sbjct  14  MLKRVEIEVDDDLIQKVIRRYRVKGAREAVNLALRTLLGE  53


>gi|340625652|ref|YP_004744104.1| hypothetical protein MCAN_06321 [Mycobacterium canettii CIPT 
140010059]
 gi|340003842|emb|CCC42972.1| hypothetical protein MCAN_06321 [Mycobacterium canettii CIPT 
140010059]
Length=83

 Score = 40.8 bits (94),  Expect = 0.064, Method: Compositional matrix adjust.
 Identities = 19/40 (48%), Positives = 27/40 (68%), Gaps = 0/40 (0%)

Query  5   VVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGE  44
           ++ R  IE+DD+L+    R YR+   R AV+LALR L+GE
Sbjct  14  MLKRVEIEVDDDLIQEVIRRYRVKGAREAVNLALRTLLGE  53


>gi|88811565|ref|ZP_01126819.1| hypothetical protein NB231_04150 [Nitrococcus mobilis Nb-231]
 gi|88790956|gb|EAR22069.1| hypothetical protein NB231_04150 [Nitrococcus mobilis Nb-231]
Length=73

 Score = 40.8 bits (94),  Expect = 0.065, Method: Compositional matrix adjust.
 Identities = 24/52 (47%), Positives = 32/52 (62%), Gaps = 1/52 (1%)

Query  6   VSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGS  57
           + RTNIE+DDEL+  A R+ ++ SKR  V LAL+  V E   R + L L G 
Sbjct  1   MMRTNIELDDELITQALRLAKVRSKRELVHLALKEFV-ENHQRKDVLELVGK  51


>gi|167969063|ref|ZP_02551340.1| hypothetical protein MtubH3_13957 [Mycobacterium tuberculosis 
H37Ra]
 gi|254230967|ref|ZP_04924294.1| hypothetical protein TBCG_00629 [Mycobacterium tuberculosis C]
 gi|254549593|ref|ZP_05140040.1| hypothetical protein Mtube_03880 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 30 more sequence titles
 Length=70

 Score = 40.4 bits (93),  Expect = 0.077, Method: Compositional matrix adjust.
 Identities = 19/40 (48%), Positives = 27/40 (68%), Gaps = 0/40 (0%)

Query  5   VVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGE  44
           ++ R  IE+DD+L+    R YR+   R AV+LALR L+GE
Sbjct  1   MLKRVEIEVDDDLIQKVIRRYRVKGAREAVNLALRTLLGE  40


>gi|118616508|ref|YP_904840.1| hypothetical protein MUL_0716 [Mycobacterium ulcerans Agy99]
 gi|118568618|gb|ABL03369.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=69

 Score = 39.7 bits (91),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 27/67 (41%), Positives = 35/67 (53%), Gaps = 11/67 (16%)

Query  5   VVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSND  64
           ++ +  IEIDD+LV  A R YRL   R  V LALR L+ E          +G G    +D
Sbjct  1   MLKKVEIEIDDDLVQEAIRRYRLAGPREVVHLALRTLLAEA-------GEKGGG----DD  49

Query  65  EIESFSD  71
           E + FSD
Sbjct  50  EYDEFSD  56


>gi|15828026|ref|NP_302289.1| hypothetical protein ML1911A [Mycobacterium leprae TN]
 gi|221230503|ref|YP_002503919.1| hypothetical protein MLBr_01911A [Mycobacterium leprae Br4923]
 gi|25397670|pir||B87148 conserved hypothetical protein ML1911A [imported] - Mycobacterium 
leprae
 gi|13093579|emb|CAC30866.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933610|emb|CAR72008.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=71

 Score = 39.7 bits (91),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 19/41 (47%), Positives = 27/41 (66%), Gaps = 0/41 (0%)

Query  5   VVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEP  45
           ++ +  IE+DD+LV    R Y L  +R AV LAL+ L+GEP
Sbjct  1   MLKKVEIEVDDDLVQEVIRRYGLLGRREAVHLALKALLGEP  41


>gi|183980986|ref|YP_001849277.1| hypothetical protein MMAR_0966 [Mycobacterium marinum M]
 gi|183174312|gb|ACC39422.1| conserved protein [Mycobacterium marinum M]
Length=69

 Score = 39.7 bits (91),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 28/67 (42%), Positives = 35/67 (53%), Gaps = 11/67 (16%)

Query  5   VVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSND  64
           ++ +  IEIDD+LV  A R YRL   R  V LALR L+ E        A +  G D   D
Sbjct  1   MLKKVEIEIDDDLVQEAIRRYRLAGPREVVHLALRTLLAE--------AGENGGGD---D  49

Query  65  EIESFSD  71
           E + FSD
Sbjct  50  EYDEFSD  56


>gi|284038009|ref|YP_003387939.1| hypothetical protein Slin_3129 [Spirosoma linguale DSM 74]
 gi|283817302|gb|ADB39140.1| Protein of unknown function DUF2191 [Spirosoma linguale DSM 74]
Length=71

 Score = 39.7 bits (91),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGS  57
           RTNI+IDDEL+  A ++ RL +K++ V+LAL++ + E   R   L+L G 
Sbjct  2   RTNIDIDDELIDKALQISRLKTKKAVVELALQQYI-ERQARQNLLSLFGK  50


>gi|254231784|ref|ZP_04925111.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|124600843|gb|EAY59853.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=41

 Score = 39.3 bits (90),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 20/37 (55%), Positives = 27/37 (73%), Gaps = 0/37 (0%)

Query  32  SAVDLALRRLVGEPLGRDEALALQGSGFDFSNDEIES  68
           +AVDLALRRLVG PL R+  L L+G G++   D++ S
Sbjct  1   AAVDLALRRLVGSPLSREFLLGLEGVGWEGDLDDLRS  37


>gi|325292386|ref|YP_004278250.1| hypothetical protein AGROH133_04985 [Agrobacterium sp. H13-3]
 gi|325060239|gb|ADY63930.1| hypothetical protein AGROH133_04985 [Agrobacterium sp. H13-3]
Length=76

 Score = 39.3 bits (90),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 25/64 (40%), Positives = 38/64 (60%), Gaps = 0/64 (0%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSNDEIE  67
           RTNIE+DD L+A A  +  L +K++ V+ ALR LV          AL+G G++ + DE+ 
Sbjct  2   RTNIELDDALIAEAMEITGLSTKKATVEKALRDLVRIHRQMRALDALEGMGWEGNLDEMR  61

Query  68  SFSD  71
           +  D
Sbjct  62  TDWD  65


>gi|320105489|ref|YP_004181079.1| hypothetical protein AciPR4_0247 [Terriglobus saanensis SP1PR4]
 gi|319924010|gb|ADV81085.1| Protein of unknown function DUF2191 [Terriglobus saanensis SP1PR4]
Length=70

 Score = 39.3 bits (90),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 19/32 (60%), Positives = 23/32 (72%), Gaps = 0/32 (0%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALR  39
           RTNIEIDD L+    R  +L +KR+AVD ALR
Sbjct  2   RTNIEIDDALIKQVMRRGKLPTKRAAVDAALR  33


>gi|335034130|ref|ZP_08527491.1| hypothetical protein AGRO_1470 [Agrobacterium sp. ATCC 31749]
 gi|333794448|gb|EGL65784.1| hypothetical protein AGRO_1470 [Agrobacterium sp. ATCC 31749]
Length=89

 Score = 38.9 bits (89),  Expect = 0.24, Method: Compositional matrix adjust.
 Identities = 24/59 (41%), Positives = 36/59 (62%), Gaps = 0/59 (0%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSNDEI  66
           RTNIE+DD L+A A  +  L +K++ V+ ALR LV          AL+G G++ + DE+
Sbjct  15  RTNIELDDALIAEAMEITGLSTKKATVEKALRDLVRIHRQMRALDALEGMGWEGNLDEM  73


>gi|258592452|emb|CBE68761.1| conserved protein of unknown function [NC10 bacterium 'Dutch 
sediment']
Length=66

 Score = 38.9 bits (89),  Expect = 0.26, Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGS  57
           RTNIE+D+ELV  A ++  L +K+  V+ AL+ LV +   RD  L+ +G 
Sbjct  3   RTNIELDEELVNEAMKLTHLKTKKELVNYALKELVRKVKRRD-LLSFEGK  51


>gi|327190277|gb|EGE57377.1| hypothetical protein RHECNPAF_439009 [Rhizobium etli CNPAF512]
Length=71

 Score = 37.7 bits (86),  Expect = 0.50, Method: Compositional matrix adjust.
 Identities = 30/72 (42%), Positives = 41/72 (57%), Gaps = 2/72 (2%)

Query  5   VVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALA-LQGSGFDFSN  63
           +V RT I+IDD L+ AA     L +K + V+LALR LV E   R  A+A L G G++   
Sbjct  1   MVMRTTIDIDDGLLDAAMIAAGLVTKEATVELALRNLV-ERHRRKNAIADLAGIGWEGEL  59

Query  64  DEIESFSDTDRK  75
           DE+      DR+
Sbjct  60  DEMPCDQPDDRR  71


>gi|217979807|ref|YP_002363954.1| hypothetical protein Msil_3709 [Methylocella silvestris BL2]
 gi|217505183|gb|ACK52592.1| conserved hypothetical protein [Methylocella silvestris BL2]
Length=70

 Score = 37.7 bits (86),  Expect = 0.60, Method: Compositional matrix adjust.
 Identities = 20/35 (58%), Positives = 25/35 (72%), Gaps = 0/35 (0%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLV  42
           RTNIEIDDEL+A A     L +K++ V+ ALR LV
Sbjct  2   RTNIEIDDELLAEAMAATGLSTKKATVEEALRALV  36


>gi|337281344|ref|YP_004620816.1| hypothetical protein Rta_36810 [Ramlibacter tataouinensis TTB310]
 gi|334732421|gb|AEG94797.1| Conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
Length=101

 Score = 37.4 bits (85),  Expect = 0.77, Method: Compositional matrix adjust.
 Identities = 24/51 (48%), Positives = 33/51 (65%), Gaps = 1/51 (1%)

Query  7   SRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGS  57
           +RTNI +DDELVA A     + +K++AV+ ALR  V +P      LAL+GS
Sbjct  3   TRTNIVLDDELVAQAMARAGVKTKKAAVEAALRAYVRKP-DYSGLLALEGS  52


>gi|115524558|ref|YP_781469.1| hypothetical protein RPE_2551 [Rhodopseudomonas palustris BisA53]
 gi|115518505|gb|ABJ06489.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
Length=67

 Score = 37.0 bits (84),  Expect = 0.94, Method: Compositional matrix adjust.
 Identities = 23/47 (49%), Positives = 29/47 (62%), Gaps = 0/47 (0%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALAL  54
           RTNIEIDD L+A AQ+     +K+  V+ ALR +V     RD ALA 
Sbjct  2   RTNIEIDDTLMAEAQKAAGQATKKDTVEQALRLMVRLKKQRDVALAF  48


>gi|299135986|ref|ZP_07029170.1| Protein of unknown function DUF2191 [Acidobacterium sp. MP5ACTX8]
 gi|298602110|gb|EFI58264.1| Protein of unknown function DUF2191 [Acidobacterium sp. MP5ACTX8]
Length=67

 Score = 36.6 bits (83),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 20/35 (58%), Positives = 26/35 (75%), Gaps = 0/35 (0%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLV  42
           RTNIEIDD+L+A A R     +KR+AV+ ALR L+
Sbjct  2   RTNIEIDDQLMAEALRSSGEPTKRAAVEAALRLLI  36


>gi|218661252|ref|ZP_03517182.1| hypothetical protein RetlI_17778 [Rhizobium etli IE4771]
Length=92

 Score = 36.6 bits (83),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 28/64 (44%), Positives = 38/64 (60%), Gaps = 2/64 (3%)

Query  4   GVVSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALA-LQGSGFDFS  62
           GV+ R  I+IDD L+ AA     L ++ + V+LALR LV E   R  A+A L G G++  
Sbjct  21  GVIMRMTIDIDDGLLDAAMIATGLATREAMVELALRNLV-ERHRRKNAIADLAGLGWEGE  79

Query  63  NDEI  66
            DEI
Sbjct  80  LDEI  83


>gi|313672675|ref|YP_004050786.1| hypothetical protein Calni_0712 [Calditerrivibrio nitroreducens 
DSM 19672]
 gi|312939431|gb|ADR18623.1| Protein of unknown function DUF2191 [Calditerrivibrio nitroreducens 
DSM 19672]
Length=66

 Score = 36.6 bits (83),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 23/57 (41%), Positives = 32/57 (57%), Gaps = 2/57 (3%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSND  64
           RTNI IDD+L+  A ++  + SK+  V+ ALR  V E L R     L+G    F +D
Sbjct  2   RTNIVIDDKLLEEAMKLSNIKSKKELVNTALREFV-ENLKRKNIKELKGK-IKFKDD  56


>gi|304318060|ref|YP_003853205.1| hypothetical protein Tthe_2672 [Thermoanaerobacterium thermosaccharolyticum 
DSM 571]
 gi|302779562|gb|ADL70121.1| Protein of unknown function DUF2191 [Thermoanaerobacterium thermosaccharolyticum 
DSM 571]
Length=69

 Score = 36.6 bits (83),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGS  57
           RTNI IDDEL+  A ++  + +K+  V++AL+ L+ E   R   + L+G 
Sbjct  2   RTNIIIDDELIKEALKITGIKTKKEIVNIALKELI-ENHKRKNLMDLKGK  50


>gi|345013747|ref|YP_004816101.1| hypothetical protein Strvi_6366 [Streptomyces violaceusniger 
Tu 4113]
 gi|344040096|gb|AEM85821.1| Protein of unknown function DUF2191 [Streptomyces violaceusniger 
Tu 4113]
Length=70

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 34/59 (58%), Gaps = 0/59 (0%)

Query  6   VSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSND  64
           +SRT I++DDE+V  A R+Y + +K  AV +A+   V   L ++   A++    D + D
Sbjct  1   MSRTMIDLDDEMVEHAMRLYGVKTKAKAVRMAMEEAVKRRLRQEGIDAIKSGDLDLTYD  59


>gi|297154825|gb|ADI04537.1| hypothetical protein SBI_01416 [Streptomyces bingchenggensis 
BCW-1]
Length=70

 Score = 36.2 bits (82),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 34/59 (58%), Gaps = 0/59 (0%)

Query  6   VSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSND  64
           +SRT I++DDE+V  A R+Y + +K  AV +A+   V   L ++   A++    D + D
Sbjct  1   MSRTMIDLDDEMVEQAMRLYGVKTKAKAVRMAMEEAVKRRLRQEGIDAIKSGDLDLTYD  59


>gi|345302429|ref|YP_004824331.1| hypothetical protein Rhom172_0553 [Rhodothermus marinus SG0.5JP17-172]
 gi|345111662|gb|AEN72494.1| Protein of unknown function DUF2191 [Rhodothermus marinus SG0.5JP17-172]
Length=70

 Score = 36.2 bits (82),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 19/35 (55%), Positives = 25/35 (72%), Gaps = 0/35 (0%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLV  42
           RT+IEIDDEL+    R+  L +KR AV+L LR L+
Sbjct  2   RTSIEIDDELMRKVLRVTGLKTKREAVELGLRTLL  36


>gi|206889882|ref|YP_002249459.1| hypothetical protein THEYE_A1668 [Thermodesulfovibrio yellowstonii 
DSM 11347]
 gi|206741820|gb|ACI20877.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii 
DSM 11347]
Length=67

 Score = 36.2 bits (82),  Expect = 1.8, Method: Compositional matrix adjust.
 Identities = 16/52 (31%), Positives = 33/52 (64%), Gaps = 1/52 (1%)

Query  6   VSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGS  57
           + RTNIE+D++++  A  + ++ +K+  ++ A+  LV + L R + L L+G 
Sbjct  1   MRRTNIELDEKILKEAMELTKMKTKKDVINFAISELV-KKLKRKKILELEGK  51


>gi|240169407|ref|ZP_04748066.1| hypothetical protein MkanA1_08843 [Mycobacterium kansasii ATCC 
12478]
Length=86

 Score = 35.8 bits (81),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 28/65 (44%), Positives = 33/65 (51%), Gaps = 11/65 (16%)

Query  7   SRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSNDEI  66
            +  IEIDD+LV  A R Y L   R AV LALR L          LA  GSG +   +E 
Sbjct  20  KKVEIEIDDDLVQEAIRRYGLADAREAVHLALRTL----------LAEGGSG-EADEEEY  68

Query  67  ESFSD  71
           + FSD
Sbjct  69  DEFSD  73


>gi|333992735|ref|YP_004525349.1| hypothetical protein JDM601_4095 [Mycobacterium sp. JDM601]
 gi|333488703|gb|AEF38095.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=73

 Score = 35.8 bits (81),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 21/44 (48%), Positives = 28/44 (64%), Gaps = 1/44 (2%)

Query  6   VSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRD  49
           + RT IE+D+ELV  AQ +    + RS V+ ALRRL+ E  G D
Sbjct  1   MKRTTIELDEELVRKAQSVTG-STLRSTVESALRRLIAEAQGED  43


>gi|268316119|ref|YP_003289838.1| hypothetical protein Rmar_0549 [Rhodothermus marinus DSM 4252]
 gi|262333653|gb|ACY47450.1| conserved hypothetical protein [Rhodothermus marinus DSM 4252]
Length=70

 Score = 35.0 bits (79),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 18/35 (52%), Positives = 25/35 (72%), Gaps = 0/35 (0%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLV  42
           RT+IEIDDEL+    R+  L +KR A++L LR L+
Sbjct  2   RTSIEIDDELMRKVLRVTGLKTKREAMELGLRTLL  36


>gi|296137154|ref|YP_003644396.1| Protein of unknown function DUF2191 [Thiomonas intermedia K12]
 gi|295797276|gb|ADG32066.1| Protein of unknown function DUF2191 [Thiomonas intermedia K12]
Length=102

 Score = 34.7 bits (78),  Expect = 5.0, Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGS  57
           RTNIEIDDEL+ AA R     +K+ AV+  L+ L      RD  LAL+G 
Sbjct  2   RTNIEIDDELMDAAMRAGPFKTKKEAVEEGLKLLRRRAAYRD-LLALRGK  50


>gi|88813609|ref|ZP_01128840.1| hypothetical protein NB231_12876 [Nitrococcus mobilis Nb-231]
 gi|88789114|gb|EAR20250.1| hypothetical protein NB231_12876 [Nitrococcus mobilis Nb-231]
Length=64

 Score = 34.7 bits (78),  Expect = 5.2, Method: Compositional matrix adjust.
 Identities = 18/35 (52%), Positives = 25/35 (72%), Gaps = 0/35 (0%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLV  42
           RTNI IDD+L+  A R+  L +KR  V+LAL+ L+
Sbjct  2   RTNIVIDDKLMERALRLTGLKTKREVVELALQTLL  36


>gi|294341452|emb|CAZ89869.1| hypothetical protein THI_3273 [Thiomonas sp. 3As]
Length=102

 Score = 34.7 bits (78),  Expect = 5.4, Method: Compositional matrix adjust.
 Identities = 18/34 (53%), Positives = 23/34 (68%), Gaps = 0/34 (0%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRL  41
           RTNIEIDDEL+ AA R     +K+ AV+  L+ L
Sbjct  2   RTNIEIDDELMDAAMRAGPFKTKKEAVEEGLKLL  35


>gi|163759143|ref|ZP_02166229.1| hypothetical protein HPDFL43_05245 [Hoeflea phototrophica DFL-43]
 gi|162283547|gb|EDQ33832.1| hypothetical protein HPDFL43_05245 [Hoeflea phototrophica DFL-43]
Length=65

 Score = 34.3 bits (77),  Expect = 5.5, Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 0/50 (0%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGS  57
           RTNIEIDDELV    ++    +KR  VD ALR  +         L LQG+
Sbjct  2   RTNIEIDDELVTELMKLTGRKTKRQVVDDALRDHLRRRRAAQAILDLQGT  51


>gi|77165011|ref|YP_343536.1| hypothetical protein Noc_1521 [Nitrosococcus oceani ATCC 19707]
 gi|254434343|ref|ZP_05047851.1| hypothetical protein NOC27_1274 [Nitrosococcus oceani AFC27]
 gi|76883325|gb|ABA58006.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
 gi|207090676|gb|EDZ67947.1| hypothetical protein NOC27_1274 [Nitrosococcus oceani AFC27]
Length=69

 Score = 34.3 bits (77),  Expect = 6.0, Method: Compositional matrix adjust.
 Identities = 18/42 (43%), Positives = 26/42 (62%), Gaps = 0/42 (0%)

Query  8   RTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRD  49
           RTNI++DD+L+ AA R   + SK+  V LAL+  V     +D
Sbjct  2   RTNIDLDDKLLEAAFRCVSVKSKKELVHLALKEFVEHHQRKD  43


>gi|338533812|ref|YP_004667146.1| excinuclease ABC subunit B [Myxococcus fulvus HW-1]
 gi|337259908|gb|AEI66068.1| excinuclease ABC subunit B [Myxococcus fulvus HW-1]
Length=704

 Score = 33.9 bits (76),  Expect = 8.1, Method: Compositional matrix adjust.
 Identities = 17/33 (52%), Positives = 23/33 (70%), Gaps = 0/33 (0%)

Query  17   LVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRD  49
            +VA+   +Y L + RS VDLA+R  VGE +GRD
Sbjct  137  IVASVSCIYGLGAARSYVDLAVRAAVGEEMGRD  169



Lambda     K      H
   0.314    0.132    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128850890930


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40