BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2010
Length=132
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609147|ref|NP_216526.1| hypothetical protein Rv2010 [Mycoba... 261 2e-68
gi|340627019|ref|YP_004745471.1| hypothetical protein MCAN_20301... 255 2e-66
gi|284990202|ref|YP_003408756.1| PilT protein domain-containing ... 93.2 1e-17
gi|333989209|ref|YP_004521823.1| hypothetical protein JDM601_056... 79.7 1e-13
gi|258592453|emb|CBE68762.1| PilT-like protein [NC10 bacterium '... 75.5 2e-12
gi|289574245|ref|ZP_06454472.1| toxin [Mycobacterium tuberculosi... 74.7 5e-12
gi|206890799|ref|YP_002249460.1| PIN domain protein [Thermodesul... 73.2 1e-11
gi|284038008|ref|YP_003387938.1| PilT protein domain protein [Sp... 73.2 1e-11
gi|149197028|ref|ZP_01874081.1| PilT protein-like protein [Lenti... 72.8 1e-11
gi|340626581|ref|YP_004745033.1| hypothetical protein MCAN_15831... 72.8 2e-11
gi|289757676|ref|ZP_06517054.1| conserved hypothetical protein [... 72.8 2e-11
gi|15608699|ref|NP_216077.1| hypothetical protein Rv1561 [Mycoba... 72.8 2e-11
gi|217979806|ref|YP_002363953.1| PilT protein domain-containing ... 68.6 3e-10
gi|326798941|ref|YP_004316760.1| twitching mobility protein PilT... 68.6 3e-10
gi|299135987|ref|ZP_07029171.1| PilT protein domain protein [Aci... 67.4 7e-10
gi|257456425|ref|ZP_05621621.1| PIN domain protein [Treponema vi... 66.2 2e-09
gi|292491388|ref|YP_003526827.1| PilT protein domain protein [Ni... 65.9 2e-09
gi|328947662|ref|YP_004364999.1| PilT protein domain protein [Tr... 65.9 2e-09
gi|86357278|ref|YP_469170.1| hypothetical protein RHE_CH01644 [R... 65.9 2e-09
gi|77165012|ref|YP_343537.1| PilT-like protein [Nitrosococcus oc... 65.9 2e-09
gi|153876449|ref|ZP_02003764.1| PilT-like protein [Beggiatoa sp.... 65.5 2e-09
gi|37522468|ref|NP_925845.1| hypothetical protein gll2899 [Gloeo... 64.7 5e-09
gi|91789943|ref|YP_550895.1| PilT protein-like protein [Polaromo... 64.3 6e-09
gi|115524559|ref|YP_781470.1| PilT domain-containing protein [Rh... 63.9 7e-09
gi|87124672|ref|ZP_01080520.1| PilT protein-like [Synechococcus ... 62.8 2e-08
gi|94968019|ref|YP_590067.1| PilT protein-like [Candidatus Korib... 62.4 2e-08
gi|42525796|ref|NP_970894.1| PilT domain-containing protein [Tre... 62.4 2e-08
gi|297545464|ref|YP_003677766.1| PilT protein domain-containing ... 62.0 3e-08
gi|289579314|ref|YP_003477941.1| PilT protein domain protein [Th... 61.6 4e-08
gi|159184571|ref|NP_354028.2| hypothetical protein Atu1004 [Agro... 61.2 4e-08
gi|209526513|ref|ZP_03275039.1| PilT protein domain protein [Art... 61.2 5e-08
gi|298531198|ref|ZP_07018599.1| PilT protein domain protein [Des... 60.5 8e-08
gi|88811564|ref|ZP_01126818.1| PilT-like protein [Nitrococcus mo... 60.5 9e-08
gi|325970524|ref|YP_004246715.1| PilT protein domain protein [Sp... 60.5 9e-08
gi|148656018|ref|YP_001276223.1| PilT domain-containing protein ... 60.1 1e-07
gi|256830294|ref|YP_003159022.1| twitching motility protein PilT... 60.1 1e-07
gi|326390062|ref|ZP_08211624.1| PilT protein domain protein [The... 60.1 1e-07
gi|345018753|ref|YP_004821106.1| PilT protein domain-containing ... 59.7 1e-07
gi|146296532|ref|YP_001180303.1| PilT domain-containing protein ... 59.7 1e-07
gi|320105490|ref|YP_004181080.1| PilT protein domain-containing ... 59.3 2e-07
gi|337281343|ref|YP_004620815.1| hypothetical protein Rta_36800 ... 59.3 2e-07
gi|325980841|ref|YP_004293244.1| PilT protein domain-containing ... 59.3 2e-07
gi|334346320|ref|YP_004554872.1| PilT protein domain-containing ... 58.9 2e-07
gi|86609158|ref|YP_477920.1| PilT domain-containing protein [Syn... 58.5 3e-07
gi|344199677|ref|YP_004784003.1| PilT protein domain-containing ... 57.8 5e-07
gi|90423935|ref|YP_532305.1| PilT protein-like protein [Rhodopse... 57.8 6e-07
gi|312793699|ref|YP_004026622.1| PilT protein domain-containing ... 57.4 7e-07
gi|166368977|ref|YP_001661250.1| hypothetical protein MAE_62360 ... 57.4 7e-07
gi|163759144|ref|ZP_02166230.1| PilT protein-like protein [Hoefl... 57.0 8e-07
gi|284054545|ref|ZP_06384755.1| PilT protein domain protein [Art... 57.0 8e-07
>gi|15609147|ref|NP_216526.1| hypothetical protein Rv2010 [Mycobacterium tuberculosis H37Rv]
gi|15841492|ref|NP_336529.1| hypothetical protein MT2065 [Mycobacterium tuberculosis CDC1551]
gi|31793190|ref|NP_855683.1| hypothetical protein Mb2033 [Mycobacterium bovis AF2122/97]
80 more sequence titles
Length=132
Score = 261 bits (668), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 132/132 (100%), Positives = 132/132 (100%), Gaps = 0/132 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL
Sbjct 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI
Sbjct 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
Query 121 RTHCGLRTEPLF 132
RTHCGLRTEPLF
Sbjct 121 RTHCGLRTEPLF 132
>gi|340627019|ref|YP_004745471.1| hypothetical protein MCAN_20301 [Mycobacterium canettii CIPT
140010059]
gi|340005209|emb|CCC44362.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=132
Score = 255 bits (651), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 128/132 (97%), Positives = 129/132 (98%), Gaps = 0/132 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
MIVDTSVWI YLSTSESLASRWLADRIAADSTVIVPEVVMMELLIG TDED+AALRRRLL
Sbjct 1 MIVDTSVWIEYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGTTDEDSAALRRRLL 60
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
QRF IEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI
Sbjct 61 QRFTIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
Query 121 RTHCGLRTEPLF 132
RTHCGLRTEPLF
Sbjct 121 RTHCGLRTEPLF 132
>gi|284990202|ref|YP_003408756.1| PilT protein domain-containing protein [Geodermatophilus obscurus
DSM 43160]
gi|284063447|gb|ADB74385.1| PilT protein domain protein [Geodermatophilus obscurus DSM 43160]
Length=138
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/132 (47%), Positives = 83/132 (63%), Gaps = 11/132 (8%)
Query 1 MIVDTSVWIAYLSTSES----LASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAA-L 55
++VD+SVWIA+L S L + + +R AA + +VV++E+L G TDE+ AA L
Sbjct 7 VLVDSSVWIAFLRDSGGPEVDLLEQLIDERRAATT-----DVVLLEVLAGTTDEERAARL 61
Query 56 RRRLLQRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDR 115
RR L + +PV DAE AAA+HR CRR G+T RSL DC +AA+ALR V V HRDR
Sbjct 62 RRFLAGAELLRQESPV-DAEQAAALHRACRRAGETPRSLNDCLIAAVALRHDVPVLHRDR 120
Query 116 DYEAIRTHCGLR 127
D+ + H LR
Sbjct 121 DFTVLAQHTDLR 132
>gi|333989209|ref|YP_004521823.1| hypothetical protein JDM601_0569 [Mycobacterium sp. JDM601]
gi|333485177|gb|AEF34569.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=134
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/135 (38%), Positives = 72/135 (54%), Gaps = 7/135 (5%)
Query 1 MIVDTSVWIAYLSTSESLAS----RWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALR 56
++VDTSVWI Y + S A+ R L++ V+ E + ME+L G ++E T +
Sbjct 2 ILVDTSVWIEYFRATGSAAALEVRRLLSEE---PDQVVTCEPIAMEILAGASNEQTYRML 58
Query 57 RRLLQRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRD 116
RL+ + + D AA I+R R G T+RS+ DC +AA+ALR VAHRD D
Sbjct 59 ERLVNGLSSLGVETATDFRSAAGIYRAARSTGQTIRSINDCLIAAVALRHHARVAHRDAD 118
Query 117 YEAIRTHCGLRTEPL 131
+E I GL T L
Sbjct 119 FEVIEGITGLMTTSL 133
>gi|258592453|emb|CBE68762.1| PilT-like protein [NC10 bacterium 'Dutch sediment']
Length=132
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/129 (35%), Positives = 74/129 (58%), Gaps = 4/129 (3%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVI-VPEVVMMELLIG-KTDEDTAALRRR 58
++VDTSVW+ +L +S + RW+ R+ D I + E++ E+L G K D + A+R
Sbjct 2 ILVDTSVWVDFLRGEDS-SQRWVLHRLIEDEADISITEIIFTEILQGIKHDGEFQAIRDY 60
Query 59 LLQRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYE 118
LL+ F I + AA I+R CR+ G TVR +DC +AA+ + + + H+D D++
Sbjct 61 LLE-FPIYRPKDIETYLHAARIYRDCRKKGKTVRKTVDCIIAAICIENDLTLLHKDSDFD 119
Query 119 AIRTHCGLR 127
I+ GL+
Sbjct 120 LIQACTGLQ 128
>gi|289574245|ref|ZP_06454472.1| toxin [Mycobacterium tuberculosis K85]
gi|289538676|gb|EFD43254.1| toxin [Mycobacterium tuberculosis K85]
Length=134
Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/127 (38%), Positives = 72/127 (57%), Gaps = 13/127 (10%)
Query 1 MIVDTSVWIAYLSTSESLAS----RWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALR 56
M++DTS W+ Y + S+A+ R L++ A + + E + ME+L G D++T
Sbjct 2 MLIDTSAWVEYFRATGSIAAVEVRRLLSEEAA---RIAMCEPIAMEILSGALDDNTHTTL 58
Query 57 RRLLQRFAIEPLAPVRDAED---AAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHR 113
RL+ P V DA D AA I+R RR G+TVRS+ DC +AA+A+R G + HR
Sbjct 59 ERLVNGL---PSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHR 115
Query 114 DRDYEAI 120
D D++ I
Sbjct 116 DADFDVI 122
>gi|206890799|ref|YP_002249460.1| PIN domain protein [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742737|gb|ACI21794.1| PIN domain protein [Thermodesulfovibrio yellowstonii DSM 11347]
Length=136
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/128 (33%), Positives = 69/128 (54%), Gaps = 0/128 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
+IVDTSVWI +L ++ A L + I ++ + + E+++ E+L G D+ + + L
Sbjct 2 LIVDTSVWIDFLRGEKTKACETLRELINSEEEIYITEIILTEILQGIKDDKLHHITKEYL 61
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
F I + A+ I R C++ G TVR IDC +A++A+ + H+D DYE I
Sbjct 62 LYFQILRPKGIETYIRASEIFRNCKKKGKTVRKTIDCIIASIAIENRATIIHKDHDYETI 121
Query 121 RTHCGLRT 128
R L+T
Sbjct 122 REFSELKT 129
>gi|284038008|ref|YP_003387938.1| PilT protein domain protein [Spirosoma linguale DSM 74]
gi|283817301|gb|ADB39139.1| PilT protein domain protein [Spirosoma linguale DSM 74]
Length=130
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/127 (35%), Positives = 66/127 (52%), Gaps = 0/127 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
MIVDTSVWI +S R +A +AAD + + ++ E+L G +D L + +
Sbjct 1 MIVDTSVWIDAFRGGQSEQVRLVATYLAADRQIFITPTIVQEVLQGVRADDEYVLIKEGI 60
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
+I L PV A AA ++R R+ G T+R DC +A A+ + V H D D++ I
Sbjct 61 LAHSILRLDPVEAAIGAADLYRSLRKKGVTIRKPNDCLIAHYAIFYDIPVLHHDADFDQI 120
Query 121 RTHCGLR 127
+H LR
Sbjct 121 ASHTALR 127
>gi|149197028|ref|ZP_01874081.1| PilT protein-like protein [Lentisphaera araneosa HTCC2155]
gi|149140138|gb|EDM28538.1| PilT protein-like protein [Lentisphaera araneosa HTCC2155]
Length=129
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/126 (27%), Positives = 69/126 (55%), Gaps = 1/126 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++VDTSVWI + ++ E+ L + I+ + + + V++ E+L G ++ L + +
Sbjct 2 VLVDTSVWIDFFNSQENEKVSQLKEAISNNEDIAICGVILTEVLQGIKNKKEYELVKEIF 61
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
+ + + + DAA I+R R+ G T+R +DC +A++A+ +A+ H D+D++ I
Sbjct 62 ESLSYLEMNKII-FTDAANIYRNLRKAGITIRKPVDCMIASVAMNYKIALIHNDKDFDPI 120
Query 121 RTHCGL 126
L
Sbjct 121 EEKLNL 126
>gi|340626581|ref|YP_004745033.1| hypothetical protein MCAN_15831 [Mycobacterium canettii CIPT
140010059]
gi|340004771|emb|CCC43915.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=134
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/127 (38%), Positives = 72/127 (57%), Gaps = 13/127 (10%)
Query 1 MIVDTSVWIAYLSTSESLAS----RWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALR 56
+++DTS W+ Y + S+A+ R L++ A + + E + ME+L G D++T
Sbjct 2 ILIDTSAWVEYFRATGSIAAVEVRRLLSEEAA---RIAMCEPIAMEILSGALDDNTHTTL 58
Query 57 RRLLQRFAIEPLAPVRDAED---AAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHR 113
RL+ P V DA D AA I+R RR G+TVRS+ DC +AA+A+R G + HR
Sbjct 59 ERLVNGL---PSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHR 115
Query 114 DRDYEAI 120
D D++ I
Sbjct 116 DADFDVI 122
>gi|289757676|ref|ZP_06517054.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289713240|gb|EFD77252.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=134
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/127 (38%), Positives = 72/127 (57%), Gaps = 13/127 (10%)
Query 1 MIVDTSVWIAYLSTSESLAS----RWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALR 56
+++DTS W+ Y + S+A+ R L++ A + + E + ME+L G D++T
Sbjct 2 ILIDTSAWVEYFRATGSIAAVEVRRLLSEEAA---RIAMCEPIAMEILSGALDDNTHTTL 58
Query 57 RRLLQRFAIEPLAPVRDAED---AAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHR 113
RL+ P V DA D AA I+R RR G+TVRS+ DC +AA+A+R G + HR
Sbjct 59 ERLVNGL---PSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHR 115
Query 114 DRDYEAI 120
D D++ I
Sbjct 116 DADFDVI 122
>gi|15608699|ref|NP_216077.1| hypothetical protein Rv1561 [Mycobacterium tuberculosis H37Rv]
gi|15841028|ref|NP_336065.1| hypothetical protein MT1612 [Mycobacterium tuberculosis CDC1551]
gi|31792746|ref|NP_855239.1| hypothetical protein Mb1587 [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=134
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/127 (38%), Positives = 72/127 (57%), Gaps = 13/127 (10%)
Query 1 MIVDTSVWIAYLSTSESLAS----RWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALR 56
+++DTS W+ Y + S+A+ R L++ A + + E + ME+L G D++T
Sbjct 2 ILIDTSAWVEYFRATGSIAAVEVRRLLSEEAA---RIAMCEPIAMEILSGALDDNTHTTL 58
Query 57 RRLLQRFAIEPLAPVRDAED---AAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHR 113
RL+ P V DA D AA I+R RR G+TVRS+ DC +AA+A+R G + HR
Sbjct 59 ERLVNGL---PSLNVDDAIDFRAAAGIYRAARRAGETVRSINDCLIAALAIRHGARIVHR 115
Query 114 DRDYEAI 120
D D++ I
Sbjct 116 DADFDVI 122
>gi|217979806|ref|YP_002363953.1| PilT protein domain-containing protein [Methylocella silvestris
BL2]
gi|217505182|gb|ACK52591.1| PilT protein domain protein [Methylocella silvestris BL2]
Length=129
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/128 (36%), Positives = 69/128 (54%), Gaps = 1/128 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++VD+SVWIA L ++ A R L I + +++ +++++E+L G E AA L
Sbjct 2 IVVDSSVWIANLRDLDTRAVRALRS-IEDPNEILIGDLILLEVLQGARSEAHAARIEASL 60
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
++F IEPL A AA +R R G TVR ID + + L G A+ H DRD+ +
Sbjct 61 RQFRIEPLLDAELAVHAAQNYRALREKGATVRKTIDLIIGSFCLARGHALLHDDRDFAPM 120
Query 121 RTHCGLRT 128
H GLR
Sbjct 121 AEHLGLRV 128
>gi|326798941|ref|YP_004316760.1| twitching mobility protein PilT [Sphingobacterium sp. 21]
gi|326549705|gb|ADZ78090.1| PilT protein domain protein [Sphingobacterium sp. 21]
Length=137
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/127 (30%), Positives = 66/127 (52%), Gaps = 0/127 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++ DTSVW+ +L+ +++ + L + I D V++ ++ E+L G ++ T + L
Sbjct 5 LLFDTSVWVDFLNKNDTPQALLLQEYIETDREVLLTPTIVQEILQGIREDSTYTEIKEAL 64
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
F + L P R A AA + R R+ G T+R D +A A+ V + H DRD++ I
Sbjct 65 SYFTLLELPPRRAAIGAADLFRSLRKKGVTIRKSNDYLIAYYAVSFSVPLVHTDRDFDHI 124
Query 121 RTHCGLR 127
+ L+
Sbjct 125 SKYSKLK 131
>gi|299135987|ref|ZP_07029171.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
gi|298602111|gb|EFI58265.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
Length=133
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/128 (35%), Positives = 67/128 (53%), Gaps = 3/128 (2%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELL-IGKTDEDTAALRRRL 59
+IVDT+VWI YL+ + + WL D + + ++++ E+L + + D D +RR L
Sbjct 2 VIVDTTVWIDYLAGRTNAQTAWL-DAQVDHQRLGLTDLILCEILQVIRADADLKKVRREL 60
Query 60 LQRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEA 119
RF + A +A +R RR G TVR+ IDC +A LR G ++ H D D+
Sbjct 61 -SRFEVFSTGGETLAVASAQNYRALRRRGITVRTTIDCLIATFCLREGHSLLHHDHDFNP 119
Query 120 IRTHCGLR 127
H GLR
Sbjct 120 FEKHLGLR 127
>gi|257456425|ref|ZP_05621621.1| PIN domain protein [Treponema vincentii ATCC 35580]
gi|257446085|gb|EEV21132.1| PIN domain protein [Treponema vincentii ATCC 35580]
Length=133
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/118 (30%), Positives = 60/118 (51%), Gaps = 1/118 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++VDTSV I + E++ + + + A + E + ELL G DE A+ + L
Sbjct 2 VLVDTSVLINFFRGKETVGTAYFEKLLEAQKHFCINEFIYQELLQGSKDEKEFAVLKSYL 61
Query 61 QRFAIEPLA-PVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDY 117
+ L ++ E+AA ++ RCRR G T+RS +D +A A+ + + H D D+
Sbjct 62 MDVPLYSLKRGIQSFENAALLNFRCRRKGVTIRSTVDLLIAETAIENNIPLLHDDDDF 119
>gi|292491388|ref|YP_003526827.1| PilT protein domain protein [Nitrosococcus halophilus Nc4]
gi|291579983|gb|ADE14440.1| PilT protein domain protein [Nitrosococcus halophilus Nc4]
Length=133
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/130 (34%), Positives = 67/130 (52%), Gaps = 1/130 (0%)
Query 2 IVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLLQ 61
+VDTSVWI + + + L + I + + V++ E+L G D+ T + + L+
Sbjct 3 LVDTSVWIDFFRGHDLPHVQRLEEIIGQGEDLALCGVILTEILQGIRDDQTFSRTQTRLE 62
Query 62 RFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAIR 121
+ P+ + AA I+R R G T+R +DC +AA AL G + H DRD+EAI
Sbjct 63 PLLLLPMTQSVFIQ-AAIIYRGLRAKGMTIRKPVDCMIAATALEHGAWLLHNDRDFEAIA 121
Query 122 THCGLRTEPL 131
H LR+ L
Sbjct 122 RHYPLRSSNL 131
>gi|328947662|ref|YP_004364999.1| PilT protein domain protein [Treponema succinifaciens DSM 2489]
gi|328447986|gb|AEB13702.1| PilT protein domain protein [Treponema succinifaciens DSM 2489]
Length=133
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/118 (29%), Positives = 61/118 (52%), Gaps = 1/118 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++VDTSV I + E+ +R+L I+ + + E + ELL G +E + + L
Sbjct 2 ILVDTSVLINFFRGRETAGTRYLEALISEEKPFCINEFIYQELLQGSKNEKEFSTLKSYL 61
Query 61 QRFAIEPLA-PVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDY 117
+ L ++ E+AA ++ +CRR G T+RS +D +A A+ + + H D D+
Sbjct 62 GEIPLYSLKLGIQSYENAAILNLKCRRKGVTIRSTVDLLIAETAIENNIPLLHDDEDF 119
>gi|86357278|ref|YP_469170.1| hypothetical protein RHE_CH01644 [Rhizobium etli CFN 42]
gi|86281380|gb|ABC90443.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length=170
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/127 (34%), Positives = 70/127 (56%), Gaps = 1/127 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++VD+SVWIA+L E+ A R L + I ++V ++++ME+L G D+ A L
Sbjct 43 IVVDSSVWIAHLRGIENAARRRLQN-IEDPLEILVGDLILMEVLQGARDDRHATTIEANL 101
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
++F I P+ A AA +R R G T+R ID + ++ G ++ H DRD++ +
Sbjct 102 RQFTIRPMLDDSLAVRAARNYRLLRERGITMRKTIDVIIGTFCIQEGHSLLHDDRDFDPM 161
Query 121 RTHCGLR 127
H GL+
Sbjct 162 AQHLGLK 168
>gi|77165012|ref|YP_343537.1| PilT-like protein [Nitrosococcus oceani ATCC 19707]
gi|254434393|ref|ZP_05047901.1| hypothetical protein NOC27_1324 [Nitrosococcus oceani AFC27]
gi|76883326|gb|ABA58007.1| PilT-like protein [Nitrosococcus oceani ATCC 19707]
gi|207090726|gb|EDZ67997.1| hypothetical protein NOC27_1324 [Nitrosococcus oceani AFC27]
Length=135
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (53%), Gaps = 7/125 (5%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++VDTSVWI +L ++ ++ L + D + ++ E+L G D+ R L+
Sbjct 2 ILVDTSVWIDFLRDRDTPGTQALNRILDRDYPFGITGIIYQEILQGA---DSPKSLRVLV 58
Query 61 QRFAIE----PLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRD 116
FA + PL V AA I+ CRR G T+RS +DC +A +AL + + H DRD
Sbjct 59 DYFATQRFYHPLDKVDTYRRAAEIYGHCRRNGVTIRSTVDCLIAQIALEHNLFLLHSDRD 118
Query 117 YEAIR 121
++ ++
Sbjct 119 FQLMK 123
>gi|153876449|ref|ZP_02003764.1| PilT-like protein [Beggiatoa sp. PS]
gi|152067086|gb|EDN66235.1| PilT-like protein [Beggiatoa sp. PS]
Length=130
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/126 (32%), Positives = 60/126 (48%), Gaps = 1/126 (0%)
Query 2 IVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLLQ 61
+VD+S WI + L I + + + V+M E+L G DE+ + + L
Sbjct 3 LVDSSAWIDFFRCQNLQHVTRLKSLIHQNEELAICGVIMTEILQGIRDENQYQMTKTRLD 62
Query 62 RFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAIR 121
P+ AA I+R R G T+R IDC +A++AL V + H DRD+EAI
Sbjct 63 TLIFLPMTRTTYVT-AANIYRTLRNKGLTIRKSIDCMIASVALENNVFLLHNDRDFEAIA 121
Query 122 THCGLR 127
H L+
Sbjct 122 RHFPLK 127
>gi|37522468|ref|NP_925845.1| hypothetical protein gll2899 [Gloeobacter violaceus PCC 7421]
gi|35213469|dbj|BAC90840.1| gll2899 [Gloeobacter violaceus PCC 7421]
Length=133
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/121 (38%), Positives = 64/121 (53%), Gaps = 2/121 (1%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
+VDTSVW++ L +A R +R+ D V + MELL G D+ L + L
Sbjct 2 FLVDTSVWVSILRDRTGMA-RECFERVVGDEPVFLSRFTQMELLQGCRDQREWVLLQTHL 60
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
Q L+ + AA I+ RR G TVRS IDC +A +A+ +A+ H DRD+EAI
Sbjct 61 QEQDYAELSEYAWTQ-AARIYYDLRRRGLTVRSSIDCCIAQLAIERRLALVHSDRDFEAI 119
Query 121 R 121
+
Sbjct 120 Q 120
>gi|91789943|ref|YP_550895.1| PilT protein-like protein [Polaromonas sp. JS666]
gi|91699168|gb|ABE45997.1| PilT protein-like protein [Polaromonas sp. JS666]
Length=140
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/121 (31%), Positives = 71/121 (59%), Gaps = 2/121 (1%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
+++D+SVWI +L S++ A R++ R + + +++ +E+L G + E A+ +++L
Sbjct 2 LLIDSSVWIDWLRGSDTDAVRFVQAREGQEELALT-QMIYLEVLQGVSSERQFAVTQKIL 60
Query 61 -QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEA 119
+ + PL + AA ++R+ R+ G T+R DC +AA+AL G + H DRD+ A
Sbjct 61 GAQTMLLPLDELETFAAAAQLYRQARQQGLTIRKSTDCLIAAIALEQGALLVHNDRDFLA 120
Query 120 I 120
+
Sbjct 121 L 121
>gi|115524559|ref|YP_781470.1| PilT domain-containing protein [Rhodopseudomonas palustris BisA53]
gi|115518506|gb|ABJ06490.1| PilT protein domain protein [Rhodopseudomonas palustris BisA53]
Length=132
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/131 (34%), Positives = 67/131 (52%), Gaps = 1/131 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
M+VD+SVWI +L+ ++ L + + D VIV ++++ E+L G E A LL
Sbjct 1 MVVDSSVWIDFLNGRKAAHVERLREALGVDE-VIVGDLMLCEVLQGLGSERDAKQVEALL 59
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
+RF I P+A A AA R RR G T+R ID + + +A+ H D D+ +
Sbjct 60 RRFEIVPMAGEAIAVSAARNFRALRRRGITIRKTIDLLIGTWCIENRMALLHNDGDFRPM 119
Query 121 RTHCGLRTEPL 131
H GL P+
Sbjct 120 ARHLGLTEVPV 130
>gi|87124672|ref|ZP_01080520.1| PilT protein-like [Synechococcus sp. RS9917]
gi|86167551|gb|EAQ68810.1| PilT protein-like [Synechococcus sp. RS9917]
Length=129
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/126 (30%), Positives = 64/126 (51%), Gaps = 1/126 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++VD+SVWI + + S L D + + + + +++++E+L G +E A R+L
Sbjct 2 IVVDSSVWINFFNGVHSAEVDRL-DALLGHTPIAIGDLILVEVLQGFRNEQDVATARQLF 60
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
+ + P+ R+A AA R RR G TVR ID +A + + + DRD++
Sbjct 61 RSLPLLPMVGGRNATTAAENCRTLRRKGITVRKTIDGLIATACIETNLPLLFSDRDFQPY 120
Query 121 RTHCGL 126
H GL
Sbjct 121 VDHLGL 126
>gi|94968019|ref|YP_590067.1| PilT protein-like [Candidatus Koribacter versatilis Ellin345]
gi|94550069|gb|ABF39993.1| PilT protein-like protein [Candidatus Koribacter versatilis Ellin345]
Length=131
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/127 (32%), Positives = 65/127 (52%), Gaps = 1/127 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++VD++VWI Y + + WL DR +A + + ++++ E+L D+ +R L
Sbjct 2 IVVDSTVWIDYFRAVPNPHTNWL-DRESARQPLAITDLILCEVLQVIRDDVMYRRVQRDL 60
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
RF + A AAA +R R G T+RS ID +A L G ++ HRDRD++
Sbjct 61 CRFTVFDSGGATLATKAAANYRLLRSKGFTIRSTIDSLIATFCLSTGYSLIHRDRDFDCF 120
Query 121 RTHCGLR 127
GL+
Sbjct 121 ERVLGLQ 127
>gi|42525796|ref|NP_970894.1| PilT domain-containing protein [Treponema denticola ATCC 35405]
gi|41815846|gb|AAS10775.1| PIN domain protein [Treponema denticola ATCC 35405]
Length=133
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/125 (30%), Positives = 64/125 (52%), Gaps = 9/125 (7%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++VDTSV I + +++ + + I + + E + E+L G DE A+ L
Sbjct 2 ILVDTSVLINFFRGRKTVGTTYFEKLIEEEKHFCINEFIYQEILQGAKDEKEFAI----L 57
Query 61 QRFAIE-PLAPVR----DAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDR 115
+ + I+ PL +R E+AA ++ RCRR G T+RS +D +A A+ + + H D
Sbjct 58 KSYLIDVPLYSLRLGIQSFENAALLNFRCRRKGFTIRSTVDLLIAETAIENNIPLLHDDD 117
Query 116 DYEAI 120
D+ I
Sbjct 118 DFVKI 122
>gi|297545464|ref|YP_003677766.1| PilT protein domain-containing protein [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296843239|gb|ADH61755.1| PilT protein domain protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length=132
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/122 (30%), Positives = 66/122 (55%), Gaps = 3/122 (2%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIG-KTDEDTAALRRRL 59
++VDTSV IA+L E+ + + I + + + E+L G KT+++ L+ L
Sbjct 2 ILVDTSVLIAFLKGIENEKVKKFEEAIQNNIPFGINNFIYQEILQGAKTEKEFNLLKEYL 61
Query 60 -LQRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYE 118
Q+F + ++ E+AA ++ +CR+ G T++S ID +A A+ + + H DRD+
Sbjct 62 GTQKFY-DLKHGIKSYENAAKLYFKCRKKGITIKSTIDLLIAETAIENNLYLLHDDRDFS 120
Query 119 AI 120
I
Sbjct 121 LI 122
>gi|289579314|ref|YP_003477941.1| PilT protein domain protein [Thermoanaerobacter italicus Ab9]
gi|289529027|gb|ADD03379.1| PilT protein domain protein [Thermoanaerobacter italicus Ab9]
Length=132
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/122 (29%), Positives = 65/122 (54%), Gaps = 3/122 (2%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIG-KTDEDTAALRRRL 59
++VDTS+ IA+L E+ + + I + + + E+L G KT+++ L+ L
Sbjct 2 ILVDTSILIAFLKGIENEKVKKFEEAIQNNIPFGINNFIYQEILQGAKTEKEFNLLKEYL 61
Query 60 -LQRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYE 118
Q+F ++ E+AA ++ +CR+ G T++S ID +A A+ + + H DRD+
Sbjct 62 GTQKFY-NLKHGIKSYENAAKLYFKCRKKGITIKSTIDLLIAETAIENNLYLLHDDRDFS 120
Query 119 AI 120
I
Sbjct 121 LI 122
>gi|159184571|ref|NP_354028.2| hypothetical protein Atu1004 [Agrobacterium tumefaciens str.
C58]
gi|159139875|gb|AAK86813.2| conserved hypothetical protein [Agrobacterium tumefaciens str.
C58]
Length=129
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/127 (31%), Positives = 66/127 (52%), Gaps = 1/127 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++VDTSVWI + ++ L+D I S VI+ +++++E+L G+ +E AA L
Sbjct 2 IVVDTSVWIDWFQNKQTPQVATLSD-INDLSDVIIGDIILLEILQGERNERRAAAIESRL 60
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
+ F + + A AAA +R+ R G TVR D + + G + DRD++ +
Sbjct 61 KVFELVSMLTPEFAVAAAANYRKLRGLGKTVRKTADLIIGTYCIEHGHKLLQNDRDFQPM 120
Query 121 RTHCGLR 127
H GL+
Sbjct 121 ADHLGLQ 127
>gi|209526513|ref|ZP_03275039.1| PilT protein domain protein [Arthrospira maxima CS-328]
gi|209493019|gb|EDZ93348.1| PilT protein domain protein [Arthrospira maxima CS-328]
Length=135
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/129 (36%), Positives = 64/129 (50%), Gaps = 4/129 (3%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++DTSVWIA L + L++ I + + + MELL G DE L L
Sbjct 2 FLIDTSVWIAVLRDKTGTVGQSLSE-IIKEQPIFLSRFTQMELLQGCRDEREWRLLETYL 60
Query 61 Q-RFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEA 119
Q + IEP A AA I+ +R G TVRS IDC +A +A+ + + H DRD+E
Sbjct 61 QDQDYIEPTPNTWVA--AARIYYDLQRQGLTVRSSIDCCIAQLAIAHQLILIHNDRDFET 118
Query 120 IRTHCGLRT 128
I T L +
Sbjct 119 IATATSLNS 127
>gi|298531198|ref|ZP_07018599.1| PilT protein domain protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509221|gb|EFI33126.1| PilT protein domain protein [Desulfonatronospira thiodismutans
ASO3-1]
Length=133
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/133 (28%), Positives = 66/133 (50%), Gaps = 4/133 (3%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
+ VDT+VWI + + + L++ I + + + +++ E+L G + R L
Sbjct 2 VFVDTTVWIDFFADLDQPHVVTLSELIEQEEDLSLCGIILAEVLQGIRSDKDFIKTREYL 61
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
P+ AA ++R R+ G T+R +DC +A++A+ + + H DRD++ I
Sbjct 62 GGLVFLPMGQATFLR-AAEVYRSLRKKGVTIRKPVDCMIASVAMEYDICLLHNDRDFDHI 120
Query 121 RTHCGLR---TEP 130
H GLR T+P
Sbjct 121 ARHSGLRVFSTKP 133
>gi|88811564|ref|ZP_01126818.1| PilT-like protein [Nitrococcus mobilis Nb-231]
gi|88790955|gb|EAR22068.1| PilT-like protein [Nitrococcus mobilis Nb-231]
Length=137
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/117 (34%), Positives = 57/117 (49%), Gaps = 1/117 (0%)
Query 2 IVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDE-DTAALRRRLL 60
++DTSVWI ++ +R L + + V+ E+L G E D LR L
Sbjct 3 LIDTSVWIDLFRQRDTGPARMLRVLLDQRLPYGITGVIYQEVLQGANSERDFKHLRNYLG 62
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDY 117
+ P VR +AA ++ RCR G TVRS IDC +A +A+ + + H D DY
Sbjct 63 SQRFYHPTDFVRSHAEAAHLYVRCRHQGITVRSTIDCLIARIAIEHKLLLLHNDNDY 119
>gi|325970524|ref|YP_004246715.1| PilT protein domain protein [Spirochaeta sp. Buddy]
gi|324025762|gb|ADY12521.1| PilT protein domain protein [Spirochaeta sp. Buddy]
Length=130
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/127 (30%), Positives = 58/127 (46%), Gaps = 1/127 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
M+VDTSVWI Y++ + A + DR V+ +++++E L G D RRL+
Sbjct 2 MVVDTSVWIDYVNGVRT-AQTDILDRELKQDRVVTGDLIIVEFLQGFRDNKQFQQARRLM 60
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
A AA R R+ G T+ ID +A + G + H D++YE +
Sbjct 61 DSLEYYDFIGKDMAIKAAQNFRLLRKKGVTIHKTIDVLIATFCIEHGFGLLHNDKEYEQM 120
Query 121 RTHCGLR 127
GLR
Sbjct 121 EKILGLR 127
>gi|148656018|ref|YP_001276223.1| PilT domain-containing protein [Roseiflexus sp. RS-1]
gi|148568128|gb|ABQ90273.1| PilT protein domain protein [Roseiflexus sp. RS-1]
Length=131
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/127 (30%), Positives = 64/127 (51%), Gaps = 1/127 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++VD+++WI Y + S + +L DRI ++V ++++ E+L G ++ RR L
Sbjct 2 LLVDSTIWIDYFNGVASSQTDYL-DRILDLKLILVGDLILAEVLQGFRNDTDFERARRAL 60
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
++F + A +A R RR G TVR ID +A + V + H D D++
Sbjct 61 EKFRQVSMVNPSLALKSARNFRLLRRKGITVRKTIDSLIATWCIESRVPLLHHDSDFDGY 120
Query 121 RTHCGLR 127
H GLR
Sbjct 121 EAHLGLR 127
>gi|256830294|ref|YP_003159022.1| twitching motility protein PilT [Desulfomicrobium baculatum DSM
4028]
gi|256579470|gb|ACU90606.1| PilT protein domain protein [Desulfomicrobium baculatum DSM 4028]
Length=131
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/127 (32%), Positives = 63/127 (50%), Gaps = 1/127 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++ DTS WI Y + + L DR + S +I+ +++M ELL G + E + R+L+
Sbjct 2 IVADTSAWIDYFRGVIAPHTEVL-DRELSRSRIIIGDLIMTELLQGFSGEKDFQMARQLM 60
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
+ L A AA +R RR G TVR ID +A + G + H DRD++ +
Sbjct 61 ESLEYRDLVGRDVAIAAAQNYRILRRKGITVRKTIDVLIATFCIENGFDLIHNDRDFDPM 120
Query 121 RTHCGLR 127
GL+
Sbjct 121 EHVLGLK 127
>gi|326390062|ref|ZP_08211624.1| PilT protein domain protein [Thermoanaerobacter ethanolicus JW
200]
gi|325993927|gb|EGD52357.1| PilT protein domain protein [Thermoanaerobacter ethanolicus JW
200]
Length=132
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/122 (28%), Positives = 62/122 (51%), Gaps = 3/122 (2%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++VDTSV I++L E+ + + I + + + ELL G E+ L + L
Sbjct 2 ILVDTSVLISFLKGIENEKVKKFEEIIQNNIPFGINNFIYQELLQGAKTENEFNLIKEYL 61
Query 61 --QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYE 118
Q+F + + E+AA ++ +C++ G T+RS ID +A A+ + + H D+D+
Sbjct 62 GTQKFY-DLKYGTKSYENAAKLYFKCKKKGITIRSTIDLLIAETAIENNLYLLHDDKDFS 120
Query 119 AI 120
I
Sbjct 121 LI 122
>gi|345018753|ref|YP_004821106.1| PilT protein domain-containing protein [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344034096|gb|AEM79822.1| PilT protein domain protein [Thermoanaerobacter wiegelii Rt8.B1]
Length=132
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/122 (28%), Positives = 62/122 (51%), Gaps = 3/122 (2%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++VDTSV I++L E+ + + I + + + ELL G E+ L + L
Sbjct 2 ILVDTSVLISFLKGIENEKVKKFEEIIQNNIPFGINNFIYQELLQGAKTENEFNLIKEYL 61
Query 61 --QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYE 118
Q+F + + E+AA ++ +C++ G T+RS ID +A A+ + + H D+D+
Sbjct 62 DTQKFY-DLKYGTKSYENAAKLYFKCKKKGITIRSTIDLLIAETAIENNLYLLHDDKDFS 120
Query 119 AI 120
I
Sbjct 121 LI 122
>gi|146296532|ref|YP_001180303.1| PilT domain-containing protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|145410108|gb|ABP67112.1| PilT protein domain protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length=132
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/123 (31%), Positives = 64/123 (53%), Gaps = 5/123 (4%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++VDTSV I Y + + L I+ + + +V E+L G DE L + L
Sbjct 2 ILVDTSVLIDYFKGNANEKVEKLHYVISNNIPFGICNIVYQEILQGAKDEKEFKLLKEYL 61
Query 61 --QRFAIEPLAPVRDA-EDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDY 117
QRF L +++ E AA ++ +C++ G ++RS ID +A +A+ G+ + H D+D+
Sbjct 62 SSQRFY--DLKNGKESYEKAAELYFKCKKKGISIRSTIDVIIAQIAIENGLLLLHNDKDF 119
Query 118 EAI 120
I
Sbjct 120 SQI 122
>gi|320105490|ref|YP_004181080.1| PilT protein domain-containing protein [Terriglobus saanensis
SP1PR4]
gi|319924011|gb|ADV81086.1| PilT protein domain protein [Terriglobus saanensis SP1PR4]
Length=131
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/129 (33%), Positives = 66/129 (52%), Gaps = 5/129 (3%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDT--AALRRR 58
++VDTSVWI L +E+ S WL + + + + ++ + E+L G + + + AL+R
Sbjct 2 IVVDTSVWIDLLRGTENSESLWLREALG-HRPIALTDLTLCEVLQGISQKRSFDNALKR- 59
Query 59 LLQRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYE 118
L + R A AAA + RR G TVR IDC +A + + HRDRD++
Sbjct 60 -LSTLKVYECCGPRMAIAAAANFQTLRRRGLTVRKTIDCLIATFCIEQKHTLLHRDRDFD 118
Query 119 AIRTHCGLR 127
A H L+
Sbjct 119 AFEQHLDLK 127
>gi|337281343|ref|YP_004620815.1| hypothetical protein Rta_36800 [Ramlibacter tataouinensis TTB310]
gi|334732420|gb|AEG94796.1| Conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
Length=131
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/123 (35%), Positives = 60/123 (49%), Gaps = 1/123 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTD-EDTAALRRRL 59
MI D+S WI YL + S A L + V++ +V+ E+L G + + L+ L
Sbjct 1 MIADSSAWIEYLRATGSAAHLRLRQALERLQPVLMLDVIYQEVLQGAGNLQQFMQLQVML 60
Query 60 LQRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEA 119
+ P P A AA + RCR G T RS DC +AA A+ G + H DRD+E
Sbjct 61 DAAPSWMPSDPCETARQAALLFARCRWSGITPRSPNDCLIAACAIEAGEPLLHADRDFEL 120
Query 120 IRT 122
I +
Sbjct 121 IAS 123
>gi|325980841|ref|YP_004293244.1| PilT protein domain-containing protein [Nitrosomonas sp. AL212]
gi|325533346|gb|ADZ28065.1| PilT protein domain protein [Nitrosomonas sp. AL212]
Length=132
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/126 (31%), Positives = 62/126 (50%), Gaps = 1/126 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
+IVDTSVWI + + + + L D S + V ++++ ELL G ++D + + LL
Sbjct 2 IIVDTSVWIDFFNGKVTEQTDRL-DFFLISSVIGVGDLILAELLQGFRNDDDYQVAQSLL 60
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
+ PL V A +A +R R+ G T+R +DC +A + A+ DRD+
Sbjct 61 IELELRPLCSVELAIKSAENYRMLRKRGITIRKTMDCLIATYCIENKAALLFSDRDFNPW 120
Query 121 RTHCGL 126
H L
Sbjct 121 VEHFHL 126
>gi|334346320|ref|YP_004554872.1| PilT protein domain-containing protein [Sphingobium chlorophenolicum
L-1]
gi|334102942|gb|AEG50366.1| PilT protein domain protein [Sphingobium chlorophenolicum L-1]
Length=130
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/127 (30%), Positives = 63/127 (50%), Gaps = 1/127 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++VD+SVWI + + S + L D + +++ +++++E+L G T E RLL
Sbjct 2 ILVDSSVWIDFFRGTASPQADLL-DSLLGKEPLLIGDLILVEILQGFTSERDFNQGHRLL 60
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
+ + AE AA R R G TVR ID +A + +A+ H DRD++
Sbjct 61 GSLEMIEIGGRDIAEQAARNFRTLRGLGVTVRKTIDTLIATRCIEASLALLHSDRDFDPF 120
Query 121 RTHCGLR 127
H GL+
Sbjct 121 TEHLGLQ 127
>gi|86609158|ref|YP_477920.1| PilT domain-containing protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557700|gb|ABD02657.1| PIN domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length=131
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/128 (30%), Positives = 66/128 (52%), Gaps = 3/128 (2%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIG-KTDEDTAALRRRL 59
++VD+++WI Y + SL + +L D + ++V ++++ E+L G + D D R L
Sbjct 2 ILVDSTIWIDYFNGISSLHTDYL-DWALDQTLILVGDLILAEVLQGFRKDADFEQARCAL 60
Query 60 LQRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEA 119
++ ++ + P A +A R RR G TVR ID +A + V + H D D++
Sbjct 61 VKLHQVQMVNPSL-AVKSAQNFRLLRRKGVTVRKTIDSLIATWCIENNVPLLHHDSDFDG 119
Query 120 IRTHCGLR 127
H GLR
Sbjct 120 YEAHLGLR 127
>gi|344199677|ref|YP_004784003.1| PilT protein domain-containing protein [Acidithiobacillus ferrivorans
SS3]
gi|343775121|gb|AEM47677.1| PilT protein domain protein [Acidithiobacillus ferrivorans SS3]
Length=137
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/128 (34%), Positives = 62/128 (49%), Gaps = 16/128 (12%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGK-TDEDTAALRRRL 59
++VDT++WIA L + L ++ D +V V++ ELL G + E LR
Sbjct 2 VLVDTTIWIALLRGHANAQVEQL-RQLLLDGEALVSPVILQELLQGAASPEQMEKLRAHF 60
Query 60 LQRFAIEPLAPVRDAEDAAAIH-------RRCRRGGDTVRSLIDCQVAAMALRIGVAVAH 112
L+ P+ ++DA A H RCR G T RS DC +A A+ GV + H
Sbjct 61 LR-------LPILISKDAVATHLAAGALYARCRWNGITPRSPHDCLIAQTAIEHGVPLLH 113
Query 113 RDRDYEAI 120
DRD+E I
Sbjct 114 DDRDFEQI 121
>gi|90423935|ref|YP_532305.1| PilT protein-like protein [Rhodopseudomonas palustris BisB18]
gi|90105949|gb|ABD87986.1| PilT protein-like [Rhodopseudomonas palustris BisB18]
Length=132
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/131 (31%), Positives = 67/131 (52%), Gaps = 1/131 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
M+VD+SVWI +L+ ++ L + + VI+ ++++ E+L G + E A+ LL
Sbjct 1 MVVDSSVWIDFLNGRKAAHVERLRAALGVEE-VILGDLMLCEVLQGLSSERDASRVEALL 59
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
+RF I P+A A AA R RR G T+R ID + + + + H D D+ +
Sbjct 60 RRFEIAPMAGDAIAVSAARNFRALRRRGITIRKTIDLLIGTWCIENRMILLHNDSDFRPM 119
Query 121 RTHCGLRTEPL 131
+ GL P+
Sbjct 120 ARYLGLLEAPM 130
>gi|312793699|ref|YP_004026622.1| PilT protein domain-containing protein [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180839|gb|ADQ41009.1| PilT protein domain protein [Caldicellulosiruptor kristjanssonii
177R1B]
Length=132
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/128 (30%), Positives = 66/128 (52%), Gaps = 15/128 (11%)
Query 1 MIVDTSVWIAYL--STSESLAS-RW-LADRIAADSTVIVPEVVMMELLIGKTDEDTAALR 56
++VDTSV I +L +T+E + W L ++I T ++ E+L G DE L
Sbjct 2 ILVDTSVLIDFLKGNTNEKVGKFEWILKNKIPFGIT----HLIYQEILQGAKDEKEFELL 57
Query 57 RRLLQRFAIEPLAPV----RDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAH 112
+ L + +P + + E+AA ++ +C++ G +RS ID +A +A+ + + H
Sbjct 58 KEYL---STQPFYELTKGKKSYEEAAMLYFKCKKQGINLRSTIDVIIAQIAIENNLYLLH 114
Query 113 RDRDYEAI 120
DRDY I
Sbjct 115 NDRDYSKI 122
>gi|166368977|ref|YP_001661250.1| hypothetical protein MAE_62360 [Microcystis aeruginosa NIES-843]
gi|166091350|dbj|BAG06058.1| hypothetical protein MAE_62360 [Microcystis aeruginosa NIES-843]
Length=132
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/133 (33%), Positives = 65/133 (49%), Gaps = 5/133 (3%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
+++DTSVWI+ S R + + A+ +++ +ELL G +E + L
Sbjct 2 LLIDTSVWISVFR-DRSGQVRQQLETLIANREILLTRFTQLELLQGSLNEQEWTILSTYL 60
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
+ L P + AA I+ RR G TVRS IDC +A AL + + H DRD+E I
Sbjct 61 EVQDYVELRP-SSWQAAARIYYDLRRQGLTVRSPIDCCIAQAALENDLLLIHNDRDFETI 119
Query 121 ---RTHCGLRTEP 130
R+ LR +P
Sbjct 120 AQVRSLQNLRFQP 132
>gi|163759144|ref|ZP_02166230.1| PilT protein-like protein [Hoeflea phototrophica DFL-43]
gi|162283548|gb|EDQ33833.1| PilT protein-like protein [Hoeflea phototrophica DFL-43]
Length=133
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/126 (30%), Positives = 62/126 (50%), Gaps = 1/126 (0%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLL 60
++VDTSVW+ + +S+ L A+ V++ +++++ELL G + + L
Sbjct 2 ILVDTSVWVDFFVGRQSVHVDCL-KHAASSGQVLIGDLILVELLQGPKHQRDILRIEQAL 60
Query 61 QRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAI 120
+ +E L A AAA +R+ RR G T R +D +A L V + H DRD+ +
Sbjct 61 SQLPVETLCGPAVAPRAAANYRQLRRSGFTPRGTVDVVIATWCLESSVKLLHNDRDFAVM 120
Query 121 RTHCGL 126
GL
Sbjct 121 ERELGL 126
>gi|284054545|ref|ZP_06384755.1| PilT protein domain protein [Arthrospira platensis str. Paraca]
gi|291571050|dbj|BAI93322.1| PIN domain protein [Arthrospira platensis NIES-39]
Length=135
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/129 (33%), Positives = 63/129 (49%), Gaps = 4/129 (3%)
Query 1 MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIG-KTDEDTAALRRRL 59
++DTSVWIA + L++ I + + + MELL G + + + L L
Sbjct 2 FLIDTSVWIAVFRDKTGTVGQSLSE-IIKEQPIFLSRFTQMELLQGCRYEREWRLLETYL 60
Query 60 LQRFAIEPLAPVRDAEDAAAIHRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEA 119
+ IEP A AA I+ +R G TVRS IDC +A +A+ + + H DRD+E
Sbjct 61 QDQDYIEPTPNTWVA--AARIYYDLQRQGLTVRSSIDCCIAQLAIAHQLILIHNDRDFET 118
Query 120 IRTHCGLRT 128
I T L +
Sbjct 119 IATATSLNS 127
Lambda K H
0.326 0.136 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130990493970
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40