BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2012

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609149|ref|NP_216528.1|  hypothetical protein Rv2012 [Mycoba...   341    2e-92
gi|294996948|ref|ZP_06802639.1|  hypothetical protein Mtub2_21188...   338    1e-91
gi|340627021|ref|YP_004745473.1|  hypothetical protein MCAN_20321...   323    4e-87
gi|308374462|ref|ZP_07436158.2|  hypothetical protein TMFG_03522 ...   300    5e-80
gi|254232182|ref|ZP_04925509.1|  conserved hypothetical protein [...   268    2e-70
gi|116625477|ref|YP_827633.1|  hypothetical protein Acid_6423 [Ca...   175    2e-42
gi|291615246|ref|YP_003525403.1|  hypothetical protein Slit_2791 ...   170    5e-41
gi|183220906|ref|YP_001838902.1|  hypothetical protein LEPBI_I151...   137    5e-31
gi|270159763|ref|ZP_06188419.1|  conserved hypothetical protein [...   134    6e-30
gi|326405836|gb|ADZ62907.1|  conserved hypothetical protein [Lact...   132    2e-29
gi|15672242|ref|NP_266416.1|  hypothetical protein L58584 [Lactoc...   130    4e-29
gi|281490748|ref|YP_003352728.1|  hypothetical protein LLKF_0256 ...   130    7e-29
gi|254380569|ref|ZP_04995935.1|  conserved hypothetical protein [...   123    7e-27
gi|116511082|ref|YP_808298.1|  hypothetical protein LACR_0264 [La...   122    1e-26
gi|343180249|dbj|BAK58588.1|  conserved hypothetical protein [Lac...   120    7e-26
gi|290978124|ref|XP_002671786.1|  predicted protein [Naegleria gr...   112    2e-23
gi|329115832|ref|ZP_08244549.1|  hypothetical protein SPB_0741 [S...  57.4    8e-07
gi|333905137|ref|YP_004479008.1|  hypothetical protein STP_0888 [...  56.2    2e-06
gi|319758847|gb|ADV70789.1|  Phage envelope protein [Streptococcu...  55.8    2e-06
gi|146319420|ref|YP_001199132.1|  Phage envelope protein [Strepto...  55.1    3e-06
gi|223934264|ref|ZP_03626192.1|  conserved hypothetical protein [...  53.9    8e-06
gi|302024386|ref|ZP_07249597.1|  hypothetical protein Ssui0_07469...  52.8    2e-05
gi|222153170|ref|YP_002562347.1|  hypothetical protein SUB1022 [S...  49.7    2e-04
gi|330685779|gb|EGG97414.1|  hypothetical protein SEVCU121_0897 [...  48.9    3e-04
gi|213863409|ref|ZP_03386664.1|  Phage envelope protein [Salmonel...  48.1    4e-04
gi|239636726|ref|ZP_04677728.1|  phage envelope protein [Staphylo...  47.8    6e-04
gi|327405778|ref|YP_004346616.1|  hypothetical protein Fluta_3812...  44.3    0.006
gi|333379052|ref|ZP_08470779.1|  hypothetical protein HMPREF9456_...  44.3    0.006
gi|73661534|ref|YP_300315.1|  hypothetical protein SSP0225 [Staph...  43.5    0.012
gi|282922832|ref|ZP_06330522.1|  hypothetical protein SARG_00484 ...  42.4    0.023
gi|256425308|ref|YP_003125961.1|  phage envelope protein [Chitino...  42.4    0.026
gi|296158611|ref|ZP_06841441.1|  conserved hypothetical protein [...  41.6    0.038
gi|57652608|ref|YP_185311.1|  hypothetical protein SACOL0419 [Sta...  41.6    0.040
gi|253730711|ref|ZP_04864876.1|  bacteriophage envelope protein [...  41.6    0.042
gi|171464324|ref|YP_001798437.1|  hypothetical protein Pnec_1769 ...  41.2    0.051
gi|110640163|ref|YP_680373.1|  hypothetical protein CHU_3798 [Cyt...  40.8    0.064
gi|49482578|ref|YP_039802.1|  hypothetical protein SAR0345 [Staph...  40.8    0.076
gi|82750059|ref|YP_415800.1|  hypothetical protein SAB0298c [Stap...  40.4    0.082
gi|283781878|ref|YP_003372633.1|  hypothetical protein Psta_4123 ...  40.4    0.084
gi|298693686|gb|ADI96908.1|  hypothetical protein SAOV_0372c [Sta...  40.0    0.11 
gi|323438807|gb|EGA96545.1|  hypothetical protein SAO11_2326 [Sta...  40.0    0.11 
gi|258424599|ref|ZP_05687476.1|  conserved hypothetical protein [...  40.0    0.11 
gi|283469655|emb|CAQ48866.1|  phage envelope protein [Staphylococ...  40.0    0.12 
gi|329847398|ref|ZP_08262426.1|  hypothetical protein ABI_04620 [...  39.7    0.13 
gi|341845840|gb|EGS87040.1|  hypothetical protein SA21269_2205 [S...  39.7    0.14 
gi|282915670|ref|ZP_06323441.1|  hypothetical protein SATG_02391 ...  39.7    0.14 
gi|21282053|ref|NP_645141.1|  hypothetical protein MW0324 [Staphy...  39.7    0.14 
gi|302332085|gb|ADL22278.1|  putative bacteriophage envelope prot...  39.3    0.19 
gi|344176620|emb|CCC87079.1|  conserved hypothetical protein [Sta...  39.3    0.19 
gi|15923338|ref|NP_370872.1|  hypothetical protein SAV0348 [Staph...  39.3    0.19 


>gi|15609149|ref|NP_216528.1| hypothetical protein Rv2012 [Mycobacterium tuberculosis H37Rv]
 gi|15841494|ref|NP_336531.1| hypothetical protein MT2067 [Mycobacterium tuberculosis CDC1551]
 gi|31793192|ref|NP_855685.1| hypothetical protein Mb2035 [Mycobacterium bovis AF2122/97]
 62 more sequence titles
 Length=164

 Score =  341 bits (875),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 164/164 (100%), Positives = 164/164 (100%), Gaps = 0/164 (0%)

Query  1    MLSKSKRSCRRRETLRIGEKMSAPITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTN  60
            MLSKSKRSCRRRETLRIGEKMSAPITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTN
Sbjct  1    MLSKSKRSCRRRETLRIGEKMSAPITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTN  60

Query  61   TWWLPAMQSLYETDYGPVLDQGVPLIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAA  120
            TWWLPAMQSLYETDYGPVLDQGVPLIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAA
Sbjct  61   TWWLPAMQSLYETDYGPVLDQGVPLIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAA  120

Query  121  AWRAGVLRYVVDLENRTCTYFGLHDQTYMEHYAAVEPSGGAPTS  164
            AWRAGVLRYVVDLENRTCTYFGLHDQTYMEHYAAVEPSGGAPTS
Sbjct  121  AWRAGVLRYVVDLENRTCTYFGLHDQTYMEHYAAVEPSGGAPTS  164


>gi|294996948|ref|ZP_06802639.1| hypothetical protein Mtub2_21188 [Mycobacterium tuberculosis 
210]
Length=164

 Score =  338 bits (868),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 163/164 (99%), Positives = 163/164 (99%), Gaps = 0/164 (0%)

Query  1    MLSKSKRSCRRRETLRIGEKMSAPITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTN  60
            MLSKSKRSCRRRETLRIGEKMSAPITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTN
Sbjct  1    MLSKSKRSCRRRETLRIGEKMSAPITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTN  60

Query  61   TWWLPAMQSLYETDYGPVLDQGVPLIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAA  120
            TWWLPAMQSLYETDYGPVLDQGVP IDGVAEVPAFDRTALVTALRADQAGQTSFREFAAA
Sbjct  61   TWWLPAMQSLYETDYGPVLDQGVPRIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAA  120

Query  121  AWRAGVLRYVVDLENRTCTYFGLHDQTYMEHYAAVEPSGGAPTS  164
            AWRAGVLRYVVDLENRTCTYFGLHDQTYMEHYAAVEPSGGAPTS
Sbjct  121  AWRAGVLRYVVDLENRTCTYFGLHDQTYMEHYAAVEPSGGAPTS  164


>gi|340627021|ref|YP_004745473.1| hypothetical protein MCAN_20321 [Mycobacterium canettii CIPT 
140010059]
 gi|340005211|emb|CCC44364.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=159

 Score =  323 bits (829),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 158/164 (97%), Positives = 159/164 (97%), Gaps = 5/164 (3%)

Query  1    MLSKSKRSCRRRETLRIGEKMSAPITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTN  60
            MLSKSKRSCRRRE+LRIGEKMS     LQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTN
Sbjct  1    MLSKSKRSCRRRESLRIGEKMS-----LQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTN  55

Query  61   TWWLPAMQSLYETDYGPVLDQGVPLIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAA  120
            TWWLPAMQSLYETDYGPVLDQGVPLIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAA
Sbjct  56   TWWLPAMQSLYETDYGPVLDQGVPLIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAA  115

Query  121  AWRAGVLRYVVDLENRTCTYFGLHDQTYMEHYAAVEPSGGAPTS  164
            AWRAGVLRYVVDLENRTCTYFGLHDQTYMEHYAAVEPSGGAPTS
Sbjct  116  AWRAGVLRYVVDLENRTCTYFGLHDQTYMEHYAAVEPSGGAPTS  159


>gi|308374462|ref|ZP_07436158.2| hypothetical protein TMFG_03522 [Mycobacterium tuberculosis SUMu006]
 gi|308341839|gb|EFP30690.1| hypothetical protein TMFG_03522 [Mycobacterium tuberculosis SUMu006]
 gi|339294937|gb|AEJ47048.1| hypothetical protein CCDC5079_1858 [Mycobacterium tuberculosis 
CCDC5079]
Length=144

 Score =  300 bits (767),  Expect = 5e-80, Method: Compositional matrix adjust.
 Identities = 144/144 (100%), Positives = 144/144 (100%), Gaps = 0/144 (0%)

Query  21   MSAPITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLD  80
            MSAPITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLD
Sbjct  1    MSAPITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLD  60

Query  81   QGVPLIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTY  140
            QGVPLIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTY
Sbjct  61   QGVPLIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTY  120

Query  141  FGLHDQTYMEHYAAVEPSGGAPTS  164
            FGLHDQTYMEHYAAVEPSGGAPTS
Sbjct  121  FGLHDQTYMEHYAAVEPSGGAPTS  144


>gi|254232182|ref|ZP_04925509.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|308232004|ref|ZP_07414586.2| hypothetical protein TMAG_02194 [Mycobacterium tuberculosis SUMu001]
 gi|308369589|ref|ZP_07418369.2| hypothetical protein TMBG_00552 [Mycobacterium tuberculosis SUMu002]
 11 more sequence titles
 Length=128

 Score =  268 bits (685),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 128/128 (100%), Positives = 128/128 (100%), Gaps = 0/128 (0%)

Query  37   MNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLDQGVPLIDGVAEVPAFD  96
            MNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLDQGVPLIDGVAEVPAFD
Sbjct  1    MNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLDQGVPLIDGVAEVPAFD  60

Query  97   RTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQTYMEHYAAVE  156
            RTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQTYMEHYAAVE
Sbjct  61   RTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQTYMEHYAAVE  120

Query  157  PSGGAPTS  164
            PSGGAPTS
Sbjct  121  PSGGAPTS  128


>gi|116625477|ref|YP_827633.1| hypothetical protein Acid_6423 [Candidatus Solibacter usitatus 
Ellin6076]
 gi|116228639|gb|ABJ87348.1| conserved hypothetical protein [Candidatus Solibacter usitatus 
Ellin6076]
Length=139

 Score =  175 bits (443),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 85/136 (63%), Positives = 101/136 (75%), Gaps = 0/136 (0%)

Query  21   MSAPITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLD  80
            MS  I NL AAQ+ AI NRP V GFP+LAE LRRAGV  N W+LPA QSLY T+ GPV+ 
Sbjct  1    MSKAIENLAAAQKHAIANRPKVGGFPYLAEALRRAGVIRNLWFLPACQSLYLTNDGPVVS  60

Query  81   QGVPLIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTY  140
            QG PL+ G  +VPAFDR AL++ALR DQAGQ++F EF AA+WRAGVLRY VD   RT  Y
Sbjct  61   QGTPLVAGTTDVPAFDRDALISALRTDQAGQSTFPEFLAASWRAGVLRYDVDFAARTVAY  120

Query  141  FGLHDQTYMEHYAAVE  156
            +G + + Y+E Y AVE
Sbjct  121  YGCNGEEYVESYPAVE  136


>gi|291615246|ref|YP_003525403.1| hypothetical protein Slit_2791 [Sideroxydans lithotrophicus ES-1]
 gi|291585358|gb|ADE13016.1| conserved hypothetical protein [Sideroxydans lithotrophicus ES-1]
Length=137

 Score =  170 bits (431),  Expect = 5e-41, Method: Compositional matrix adjust.
 Identities = 80/136 (59%), Positives = 102/136 (75%), Gaps = 0/136 (0%)

Query  21   MSAPITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLD  80
            MS  I NL++AQ+ A+  RP V+GFP+LAETLRRAGV  N W LP+ QSLY T+ GPV+ 
Sbjct  1    MSIAIENLKSAQQRAMAGRPKVSGFPYLAETLRRAGVTRNIWSLPSCQSLYLTEKGPVVV  60

Query  81   QGVPLIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTY  140
            QG PL+ G+A+VP F R AL+TALR DQAG ++F EF  A WRAGV++Y VD   RTCTY
Sbjct  61   QGSPLVTGMADVPPFSRDALITALRTDQAGNSTFPEFLTATWRAGVVKYDVDFAARTCTY  120

Query  141  FGLHDQTYMEHYAAVE  156
            +G+ ++ Y+E Y AVE
Sbjct  121  YGVGEEKYVESYPAVE  136


>gi|183220906|ref|YP_001838902.1| hypothetical protein LEPBI_I1519 [Leptospira biflexa serovar 
Patoc strain 'Patoc 1 (Paris)']
 gi|189911002|ref|YP_001962557.1| phage-like protein [Leptospira biflexa serovar Patoc strain 'Patoc 
1 (Ames)']
 gi|167775678|gb|ABZ93979.1| Phage related protein [Leptospira biflexa serovar Patoc strain 
'Patoc 1 (Ames)']
 gi|167779328|gb|ABZ97626.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc 
strain 'Patoc 1 (Paris)']
Length=139

 Score =  137 bits (346),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 66/135 (49%), Positives = 87/135 (65%), Gaps = 0/135 (0%)

Query  21   MSAPITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLD  80
            M+   T L  AQ+ A+  RP V GF  LAE LR AGV  N W LP+ QS+Y    G V+ 
Sbjct  1    MANLTTKLIEAQKLAMSLRPKVGGFLVLAEVLRLAGVTRNRWSLPSCQSVYHMKEGSVVQ  60

Query  81   QGVPLIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTY  140
            QG P++ G+ E+P FD   L+ ALR DQ G++SF EF  +AW AGV+ Y VD E+R   Y
Sbjct  61   QGNPIVMGIHEIPKFDSEGLIRALRTDQEGKSSFPEFLKSAWEAGVIGYDVDFESRKVVY  120

Query  141  FGLHDQTYMEHYAAV  155
            +G++D++YME Y AV
Sbjct  121  YGVNDESYMEEYPAV  135


>gi|270159763|ref|ZP_06188419.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|289165466|ref|YP_003455604.1| hypothetical protein LLO_2140 [Legionella longbeachae NSW150]
 gi|269988102|gb|EEZ94357.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|288858639|emb|CBJ12532.1| Conserved hypothetical protein [Legionella longbeachae NSW150]
Length=141

 Score =  134 bits (336),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 64/136 (48%), Positives = 87/136 (64%), Gaps = 0/136 (0%)

Query  21   MSAPITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLD  80
            M+  I  L  A + AI  RP + GFP +AE LR+AGV TN W LP+ QS+Y    G V+ 
Sbjct  1    MNQIIEKLTEALKYAISIRPNIGGFPIIAEVLRQAGVETNRWSLPSCQSIYIMSEGSVVQ  60

Query  81   QGVPLIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTY  140
             G PL+ G+ EVP FDR AL+ A+R DQ G+++F EF  +AW AGV+ Y V+   R   Y
Sbjct  61   VGTPLVTGMYEVPKFDRDALIAAIRTDQEGKSTFPEFLHSAWDAGVIGYDVNFVGREVVY  120

Query  141  FGLHDQTYMEHYAAVE  156
            +G++ + Y+E Y AVE
Sbjct  121  YGVNSERYVEKYPAVE  136


>gi|326405836|gb|ADZ62907.1| conserved hypothetical protein [Lactococcus lactis subsp. lactis 
CV56]
Length=137

 Score =  132 bits (332),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 65/132 (50%), Positives = 81/132 (62%), Gaps = 0/132 (0%)

Query  25   ITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLDQGVP  84
            I  +Q A + A   RP V GFP+LAE +R AGV  N W LPA QS + T  G +     P
Sbjct  4    IELVQGAMKKAEKIRPKVGGFPYLAECMREAGVLKNVWTLPAGQSTFWTSAGVISVTNSP  63

Query  85   LIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLH  144
            ++ G  EVP FD+ AL+ ALRADQAGQT+F EF +A W AGV+ Y  D   R  TY G  
Sbjct  64   MVSGFHEVPVFDQEALIKALRADQAGQTTFPEFLSATWEAGVISYEADFSERKVTYLGSQ  123

Query  145  DQTYMEHYAAVE  156
             ++Y+E Y AVE
Sbjct  124  GESYVEAYPAVE  135


>gi|15672242|ref|NP_266416.1| hypothetical protein L58584 [Lactococcus lactis subsp. lactis 
Il1403]
 gi|12723120|gb|AAK04358.1|AE006263_5 hypothetical protein L58584 [Lactococcus lactis subsp. lactis 
Il1403]
Length=137

 Score =  130 bits (328),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 64/132 (49%), Positives = 80/132 (61%), Gaps = 0/132 (0%)

Query  25   ITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLDQGVP  84
            I  +Q A + A   RP V GFP+LAE +R AGV  N W LP  QS + T  G +     P
Sbjct  4    IELVQGAMKKAEKIRPKVGGFPYLAECMREAGVLKNVWTLPVGQSTFWTSAGVISVTNSP  63

Query  85   LIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLH  144
            ++ G  EVP FD+ AL+ ALRADQAGQT+F EF +A W AGV+ Y  D   R  TY G  
Sbjct  64   MVSGFHEVPVFDQEALIKALRADQAGQTTFPEFLSATWEAGVISYEADFSERKVTYLGSQ  123

Query  145  DQTYMEHYAAVE  156
             ++Y+E Y AVE
Sbjct  124  GESYVEAYPAVE  135


>gi|281490748|ref|YP_003352728.1| hypothetical protein LLKF_0256 [Lactococcus lactis subsp. lactis 
KF147]
 gi|281374517|gb|ADA64038.1| Hypothetical protein LLKF_0256 [Lactococcus lactis subsp. lactis 
KF147]
Length=137

 Score =  130 bits (327),  Expect = 7e-29, Method: Compositional matrix adjust.
 Identities = 64/131 (49%), Positives = 80/131 (62%), Gaps = 0/131 (0%)

Query  25   ITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLDQGVP  84
            I  +Q A + A   RP V GFP+LAE +R AGV  N W LPA QS + T  G +     P
Sbjct  4    IELVQGAMKKAEKIRPKVGGFPYLAECMREAGVLKNVWTLPAGQSTFWTSAGVISVTNSP  63

Query  85   LIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLH  144
            ++ G  EVP FD+ AL+ ALRADQAGQT+F EF +A W AGV+ Y  D   R  TY G  
Sbjct  64   MVSGFHEVPVFDQEALIKALRADQAGQTTFPEFLSATWEAGVISYEADFSERKVTYLGSQ  123

Query  145  DQTYMEHYAAV  155
             ++Y+E Y AV
Sbjct  124  GESYVEAYPAV  134


>gi|254380569|ref|ZP_04995935.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194339480|gb|EDX20446.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length=140

 Score =  123 bits (309),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 66/131 (51%), Positives = 81/131 (62%), Gaps = 0/131 (0%)

Query  25   ITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLDQGVP  84
            I  L+AA       RP V GFP+LAE+LR+AGV      +PA   LY T++G ++ QG P
Sbjct  7    IGQLRAALERGAAVRPQVGGFPYLAESLRQAGVTRCRMAVPANAFLYLTEHGDIVVQGEP  66

Query  85   LIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLH  144
            L+ G A  P FDR ALV ALRADQAG+T+F EF    W AG+  Y VD   RTCTY+G  
Sbjct  67   LVTGFATAPPFDRAALVEALRADQAGRTTFPEFVRGCWDAGIAWYDVDTTARTCTYYGTA  126

Query  145  DQTYMEHYAAV  155
              +Y E Y AV
Sbjct  127  GDSYTEDYPAV  137


>gi|116511082|ref|YP_808298.1| hypothetical protein LACR_0264 [Lactococcus lactis subsp. cremoris 
SK11]
 gi|125623140|ref|YP_001031623.1| hypothetical protein llmg_0267 [Lactococcus lactis subsp. cremoris 
MG1363]
 gi|116106736|gb|ABJ71876.1| Phage envelope protein [Lactococcus lactis subsp. cremoris SK11]
 gi|124491948|emb|CAL96874.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris 
MG1363]
 gi|300069888|gb|ADJ59288.1| hypothetical protein LLNZ_01400 [Lactococcus lactis subsp. cremoris 
NZ9000]
Length=137

 Score =  122 bits (307),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 63/131 (49%), Positives = 79/131 (61%), Gaps = 0/131 (0%)

Query  25   ITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLDQGVP  84
            I  ++ A + A   RP V GFP+LAE LR AGV  N W LPA QS + T  G +     P
Sbjct  4    IELVEGAMKKAETIRPKVGGFPYLAECLREAGVLKNVWTLPAGQSTFWTVAGVISLTNAP  63

Query  85   LIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLH  144
            ++ G  EV  FDR AL+ ALRADQAG+T+F EF +A W AGV+ Y  + E R  TY G  
Sbjct  64   MLTGFQEVATFDREALIKALRADQAGKTTFPEFLSATWEAGVIDYEANFEKRIVTYRGAQ  123

Query  145  DQTYMEHYAAV  155
             + Y+E Y AV
Sbjct  124  GEEYVEAYPAV  134


>gi|343180249|dbj|BAK58588.1| conserved hypothetical protein [Lactococcus garvieae ATCC 49156]
 gi|343182217|dbj|BAK60555.1| conserved hypothetical protein [Lactococcus garvieae Lg2]
Length=143

 Score =  120 bits (301),  Expect = 7e-26, Method: Compositional matrix adjust.
 Identities = 58/129 (45%), Positives = 78/129 (61%), Gaps = 0/129 (0%)

Query  27   NLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLDQGVPLI  86
            N+Q A   A        GFP+LAE LR+ G+  N W LP+  S Y ++ G +++ G PLI
Sbjct  5    NIQRAMLKANHVGAESKGFPYLAECLRQEGIVKNIWHLPSGDSFYFSETGSLVNPGNPLI  64

Query  87   DGVAEVPAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
              V   P FD+ ALV  +RA+QAG+ SF EF A+ W+AG++RY VD   R  +YFG  DQ
Sbjct  65   GRVGPCPDFDQIALVQNIRANQAGKISFSEFLASLWKAGIIRYEVDFTTRQMSYFGAFDQ  124

Query  147  TYMEHYAAV  155
             Y E Y +V
Sbjct  125  VYQESYPSV  133


>gi|290978124|ref|XP_002671786.1| predicted protein [Naegleria gruberi]
 gi|284085358|gb|EFC39042.1| predicted protein [Naegleria gruberi]
Length=145

 Score =  112 bits (281),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 56/132 (43%), Positives = 78/132 (60%), Gaps = 2/132 (1%)

Query  25   ITNLQAAQRDAIMNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYG-PVLDQGV  83
            I N+  A + A    P V  FP+LAETLRRAG+  N W+LP   S+Y T  G  V++Q  
Sbjct  4    IENINKAFQLAFKISPKVGKFPYLAETLRRAGIERNRWFLPGCTSIYYTSSGEKVVNQME  63

Query  84   PLID-GVAEVPAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFG  142
             L+  G+ E+  F+R  +V A+R DQAG+T F +F    W  GV+ Y VD  NR CTY+G
Sbjct  64   SLLPYGMHEIKPFNRNLVVDAIRKDQAGETEFPQFLKCIWEGGVVSYEVDFVNRVCTYYG  123

Query  143  LHDQTYMEHYAA  154
              ++ + E Y +
Sbjct  124  ADEKEFYEEYYS  135


>gi|329115832|ref|ZP_08244549.1| hypothetical protein SPB_0741 [Streptococcus parauberis NCFD 
2020]
 gi|326906237|gb|EGE53151.1| hypothetical protein SPB_0741 [Streptococcus parauberis NCFD 
2020]
Length=127

 Score = 57.4 bits (137),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 32/103 (32%), Positives = 51/103 (50%), Gaps = 2/103 (1%)

Query  44   GFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLDQGVPLIDGVAEVPAFDRTALVTA  103
             FP L +     G+ +NT  +   +++Y    G  +      ++ VAE    D+   +  
Sbjct  18   NFPMLVQAFLDLGMVSNTVNIKDGKAIYNDKDGNQVAMAAFQVEAVAE--NLDKDYFMQQ  75

Query  104  LRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
            L+  Q+GQT F  F      AG+ ++ VDL  +TCTYF L+DQ
Sbjct  76   LKLHQSGQTDFPTFCKDTADAGIYKWDVDLLVKTCTYFDLNDQ  118


>gi|333905137|ref|YP_004479008.1| hypothetical protein STP_0888 [Streptococcus parauberis KCTC 
11537]
 gi|333120402|gb|AEF25336.1| hypothetical protein STP_0888 [Streptococcus parauberis KCTC 
11537]
Length=127

 Score = 56.2 bits (134),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 32/103 (32%), Positives = 50/103 (49%), Gaps = 2/103 (1%)

Query  44   GFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLDQGVPLIDGVAEVPAFDRTALVTA  103
             FP L +     G+ +NT  +   +++Y    G  +      ++ VAE    D+   +  
Sbjct  18   NFPMLVQAFLDLGMVSNTVNIKDGKAIYNDKDGNQVAMAAFQVEAVAE--NLDKDYFMQQ  75

Query  104  LRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
            L   Q+GQT F  F      AG+ ++ VDL  +TCTYF L+DQ
Sbjct  76   LILHQSGQTDFSTFCKDTADAGIYKWDVDLLVKTCTYFDLNDQ  118


>gi|319758847|gb|ADV70789.1| Phage envelope protein [Streptococcus suis JS14]
Length=131

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 37/114 (33%), Positives = 56/114 (50%), Gaps = 4/114 (3%)

Query  45   FPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLD-QGVPLIDGVAEVPAFDRTALVTA  103
            FP L    +  G+  N   + + Q  Y +  G  L+ QG  +   V++    D+   VT 
Sbjct  19   FPKLIAYFKDLGMVENIVDIQSGQVTYRSQTGQTLEKQGYQVTIPVSDQANLDQ--FVTI  76

Query  104  LRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ-TYMEHYAAVE  156
            LR  QAGQT F  F      AG+ ++V+DLE  TC+Y    +Q  ++E   +VE
Sbjct  77   LRNHQAGQTDFLTFCQETAEAGIYKWVIDLEAMTCSYMDKAEQAVFVETIPSVE  130


>gi|146319420|ref|YP_001199132.1| Phage envelope protein [Streptococcus suis 05ZYH33]
 gi|146321624|ref|YP_001201335.1| Phage envelope protein [Streptococcus suis 98HAH33]
 gi|253752443|ref|YP_003025584.1| hypothetical protein SSUSC84_1598 [Streptococcus suis SC84]
 8 more sequence titles
 Length=159

 Score = 55.1 bits (131),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 37/114 (33%), Positives = 56/114 (50%), Gaps = 4/114 (3%)

Query  45   FPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLD-QGVPLIDGVAEVPAFDRTALVTA  103
            FP L    +  G+  N   + + Q  Y +  G  L+ QG  +   V++    D+   VT 
Sbjct  47   FPKLIAYFKDLGMVENIVDIQSGQVTYRSQTGQTLEKQGYQVTIPVSDQANLDQ--FVTI  104

Query  104  LRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ-TYMEHYAAVE  156
            LR  QAGQT F  F      AG+ ++V+DLE  TC+Y    +Q  ++E   +VE
Sbjct  105  LRNHQAGQTDFLTFCQETAEAGIYKWVIDLEAMTCSYMDKAEQAVFVETIPSVE  158


>gi|223934264|ref|ZP_03626192.1| conserved hypothetical protein [Streptococcus suis 89/1591]
 gi|330833384|ref|YP_004402209.1| hypothetical protein SSUST3_1608 [Streptococcus suis ST3]
 gi|223897063|gb|EEF63496.1| conserved hypothetical protein [Streptococcus suis 89/1591]
 gi|329307607|gb|AEB82023.1| conserved hypothetical protein [Streptococcus suis ST3]
Length=131

 Score = 53.9 bits (128),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 37/114 (33%), Positives = 56/114 (50%), Gaps = 4/114 (3%)

Query  45   FPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLDQ-GVPLIDGVAEVPAFDRTALVTA  103
            FP L    +  G+  N   + + Q  Y +  G  L++ G  +   V++    D+   VT 
Sbjct  19   FPKLIAYFKDLGMVENIVDIQSGQVTYRSQTGQTLEKTGYQVTIPVSDQANLDQ--FVTI  76

Query  104  LRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ-TYMEHYAAVE  156
            LR  QAGQT F  F      AGV ++V+DLE  TC+Y    +Q  ++E   +VE
Sbjct  77   LRNHQAGQTDFPTFCQETAEAGVYKWVIDLEAMTCSYLDQAEQAVFVEAVPSVE  130


>gi|302024386|ref|ZP_07249597.1| hypothetical protein Ssui0_07469 [Streptococcus suis 05HAS68]
Length=159

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 37/114 (33%), Positives = 56/114 (50%), Gaps = 4/114 (3%)

Query  45   FPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLDQ-GVPLIDGVAEVPAFDRTALVTA  103
            FP L    +  G+  N   + + Q  Y +  G  L++ G  +   V++    D+   VT 
Sbjct  47   FPKLIAYFKDLGMVENIVDIQSGQVTYRSQTGQTLEKTGYQVTIPVSDQANLDQ--FVTI  104

Query  104  LRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ-TYMEHYAAVE  156
            LR  QAGQT F  F      AGV ++V+DLE  TC+Y    +Q  ++E   +VE
Sbjct  105  LRNHQAGQTDFPTFCQETAEAGVYKWVIDLEAMTCSYLDQAEQAVFVEAVPSVE  158


>gi|222153170|ref|YP_002562347.1| hypothetical protein SUB1022 [Streptococcus uberis 0140J]
 gi|222113983|emb|CAR42284.1| conserved hypothetical protein [Streptococcus uberis 0140J]
Length=126

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 34/113 (31%), Positives = 49/113 (44%), Gaps = 2/113 (1%)

Query  35   AIMNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLDQGVPLIDGVAEVPA  94
            A   R + N FP L +     G+ T    +   Q++Y T  G   D     ++ V     
Sbjct  8    AAQERFSGNDFPSLVKAYMALGIVTYAINIQIGQAIYVTKDGQKCDLPAYQVEDVKSKS-  66

Query  95   FDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQT  147
             D +  +  LR  QA +T F  F       G+ R+VVDL  +TC YF L D+ 
Sbjct  67   -DPSQFLEKLRNHQAKETDFPTFCQDYATNGICRWVVDLVAKTCRYFDLEDKV  118


>gi|330685779|gb|EGG97414.1| hypothetical protein SEVCU121_0897 [Staphylococcus epidermidis 
VCU121]
Length=129

 Score = 48.9 bits (115),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 29/104 (28%), Positives = 50/104 (49%), Gaps = 3/104 (2%)

Query  45   FPHLAETLRRAGVRTNTWWLPAMQSLY-ETDYGPVLDQGVPLIDGVAEVPAFDRTALVTA  103
            FP L +  +  G+ +N   +    S+Y  T+   +  +GV +   +A+    D    +  
Sbjct  20   FPKLFKAFKDMGMVSNEVNIQHGTSVYTNTNEQTITAEGVKVSHPIADTSNTDEVKDI--  77

Query  104  LRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQT  147
            L+  QAGQT F  F     +AG+ ++ +D+   TC+Y  L  QT
Sbjct  78   LKRHQAGQTDFPTFCEEMAQAGIYKWYIDINAGTCSYIDLKQQT  121


>gi|213863409|ref|ZP_03386664.1| Phage envelope protein [Salmonella enterica subsp. enterica serovar 
Typhi str. M223]
Length=81

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 27/69 (40%), Positives = 38/69 (56%), Gaps = 4/69 (5%)

Query  92   VPAFDRTAL---VTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ-T  147
            +P  D+  L   VT LR  QAGQT F  F      AG+ ++V+DLE  TC+Y    +Q  
Sbjct  12   IPVSDQANLDQFVTILRNHQAGQTDFLTFCQETAEAGIYKWVIDLEAMTCSYMDKAEQAV  71

Query  148  YMEHYAAVE  156
            ++E   +VE
Sbjct  72   FVETIPSVE  80


>gi|239636726|ref|ZP_04677728.1| phage envelope protein [Staphylococcus warneri L37603]
 gi|239598081|gb|EEQ80576.1| phage envelope protein [Staphylococcus warneri L37603]
Length=129

 Score = 47.8 bits (112),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 29/104 (28%), Positives = 50/104 (49%), Gaps = 3/104 (2%)

Query  45   FPHLAETLRRAGVRTNTWWLPAMQSLY-ETDYGPVLDQGVPLIDGVAEVPAFDRTALVTA  103
            FP L +  +  G+ +N   +    S+Y  TD   +  +GV +   +A+    +    +  
Sbjct  20   FPMLFKAFKDMGMVSNEVNIQHGTSVYTNTDGQTITAEGVKVSHPIADTSHVEEVKDI--  77

Query  104  LRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQT  147
            L   QAGQT F  F     +AG+ ++ +D+   TC+Y  L+ QT
Sbjct  78   LTRHQAGQTDFPTFCEEMAQAGIYKWFIDINAGTCSYIDLNQQT  121


>gi|327405778|ref|YP_004346616.1| hypothetical protein Fluta_3812 [Fluviicola taffensis DSM 16823]
 gi|327321286|gb|AEA45778.1| hypothetical protein Fluta_3812 [Fluviicola taffensis DSM 16823]
Length=130

 Score = 44.3 bits (103),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 23/97 (24%), Positives = 43/97 (45%), Gaps = 1/97 (1%)

Query  45   FPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLDQGVPLIDGVAEVPAFDRTALVTAL  104
            FP   + ++R GV++   W+    ++Y  + G    +  P  + +      D       L
Sbjct  20   FPQYIQEIKRFGVKSFETWVSDSHTVYFGESG-FQTESQPKYEKLTVADRTDIDQFKVRL  78

Query  105  RADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYF  141
            +  Q GQT +  F     + GV ++++DL   TC Y+
Sbjct  79   KIHQQGQTDYYTFCKDCAKTGVEKWIMDLNAMTCIYY  115


>gi|333379052|ref|ZP_08470779.1| hypothetical protein HMPREF9456_02374 [Dysgonomonas mossii DSM 
22836]
 gi|332885864|gb|EGK06110.1| hypothetical protein HMPREF9456_02374 [Dysgonomonas mossii DSM 
22836]
Length=129

 Score = 44.3 bits (103),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 23/99 (24%), Positives = 43/99 (44%), Gaps = 5/99 (5%)

Query  45   FPHLAETLRRAGVRTNTWWLPAMQSLY--ETDYGPVLDQGVPLIDGVAEVPAFDRTALVT  102
            FP   + +++ GV +   W+    + Y  + DY        P    ++     D+   ++
Sbjct  20   FPKYIQEIKQMGVVSFETWVKDSHTEYFGKDDYKT---SSKPQYSELSIADNVDKDKFIS  76

Query  103  ALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYF  141
             L+  Q G+T +  F       G+ ++VV+L   TC YF
Sbjct  77   CLKIHQQGKTDYYTFCTHCAETGIEKWVVNLNAMTCIYF  115


>gi|73661534|ref|YP_300315.1| hypothetical protein SSP0225 [Staphylococcus saprophyticus subsp. 
saprophyticus ATCC 15305]
 gi|72494049|dbj|BAE17370.1| conserved hypothetical protein [Staphylococcus saprophyticus 
subsp. saprophyticus ATCC 15305]
Length=130

 Score = 43.5 bits (101),  Expect = 0.012, Method: Compositional matrix adjust.
 Identities = 29/109 (27%), Positives = 49/109 (45%), Gaps = 9/109 (8%)

Query  45   FPHLAETLRRAGVRTNTWWLPAMQSLY-ETDYGPVLDQGVPLIDGVAEVPAFDRTALVTA  103
            FP L +  +  G+  NT  +   ++ Y   D   + D+ V +      VP   +T L   
Sbjct  20   FPKLFKAFKDMGIIVNTVNIEQGETSYIHQDGAEITDESVKV-----AVPIAQQTHLALV  74

Query  104  ---LRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQTYM  149
               L+  QAG+T F +F     RAG+ ++ +D+   TC Y    +Q  +
Sbjct  75   KDILQRHQAGETDFPKFCDEMARAGIYKWYIDIIAGTCAYIDKENQVLI  123


>gi|282922832|ref|ZP_06330522.1| hypothetical protein SARG_00484 [Staphylococcus aureus subsp. 
aureus C101]
 gi|282315053|gb|EFB45439.1| hypothetical protein SARG_00484 [Staphylococcus aureus subsp. 
aureus C101]
Length=129

 Score = 42.4 bits (98),  Expect = 0.023, Method: Compositional matrix adjust.
 Identities = 18/55 (33%), Positives = 31/55 (57%), Gaps = 0/55 (0%)

Query  92   VPAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
            VP+ +++ +   L   Q GQT F  F     +AG+ ++ +D++  TCTY  L +Q
Sbjct  66   VPSSNQSIVQDVLTRHQQGQTDFETFCDEMAQAGIYKWHIDIQAGTCTYIDLQEQ  120


>gi|256425308|ref|YP_003125961.1| phage envelope protein [Chitinophaga pinensis DSM 2588]
 gi|256040216|gb|ACU63760.1| putative phage envelope protein [Chitinophaga pinensis DSM 2588]
Length=133

 Score = 42.4 bits (98),  Expect = 0.026, Method: Compositional matrix adjust.
 Identities = 26/97 (27%), Positives = 43/97 (45%), Gaps = 1/97 (1%)

Query  45   FPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLDQGVPLIDGVAEVPAFDRTALVTAL  104
            FP   + ++  G+R   + +    ++Y  D    + + +P+ D      +    AL   +
Sbjct  20   FPRYVQEIKGMGLRRYEYLVQDGTTVYYGDDNHQV-ESIPIYDPQEINSSSSAAALRHTI  78

Query  105  RADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYF  141
               Q GQT F  F   A  AGV ++V+D E   CTY 
Sbjct  79   AIHQQGQTDFLTFCQQAANAGVEKWVIDTERMVCTYL  115


>gi|296158611|ref|ZP_06841441.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
 gi|295891179|gb|EFG70967.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
Length=135

 Score = 41.6 bits (96),  Expect = 0.038, Method: Compositional matrix adjust.
 Identities = 36/134 (27%), Positives = 56/134 (42%), Gaps = 3/134 (2%)

Query  21   MSAPITNL--QAAQRDAIMNRPAVNGFPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPV  78
            MSA +     +AA+  A  +      F  +   L  AG+ +        +  Y    G  
Sbjct  1    MSAKLNEASRRAAENCAHQSHNGTIDFGSVVRALGEAGIESYFTDYRRGEHTYYAPGGET  60

Query  79   LDQGVPLIDGVAEVPAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTC  138
                +PL D VA   AFD  A+  A+R  Q+G   + EF +    AG + Y V +  R  
Sbjct  61   HVIALPLPD-VAIANAFDADAVTQAVRGAQSGAVKYAEFVSRTLAAGCVGYFVWITGRQV  119

Query  139  TYFGLHDQTYMEHY  152
             YFG   + ++E +
Sbjct  120  QYFGRRGEVHVERF  133


>gi|57652608|ref|YP_185311.1| hypothetical protein SACOL0419 [Staphylococcus aureus subsp. 
aureus COL]
 gi|87161135|ref|YP_493063.1| hypothetical protein SAUSA300_0349 [Staphylococcus aureus subsp. 
aureus USA300_FPR3757]
 gi|88194130|ref|YP_498919.1| hypothetical protein SAOUHSC_00330 [Staphylococcus aureus subsp. 
aureus NCTC 8325]
 28 more sequence titles
 Length=129

 Score = 41.6 bits (96),  Expect = 0.040, Method: Compositional matrix adjust.
 Identities = 18/51 (36%), Positives = 27/51 (53%), Gaps = 0/51 (0%)

Query  96   DRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
            ++T +   L   Q GQT F  F      AG+ ++ +D++  TCTY  L DQ
Sbjct  70   NKTIVQDVLTRHQQGQTDFETFCDEMAEAGIYKWHIDIQAGTCTYIDLQDQ  120


>gi|253730711|ref|ZP_04864876.1| bacteriophage envelope protein [Staphylococcus aureus subsp. 
aureus USA300_TCH959]
 gi|253735090|ref|ZP_04869255.1| bacteriophage envelope protein [Staphylococcus aureus subsp. 
aureus TCH130]
 gi|253725555|gb|EES94284.1| bacteriophage envelope protein [Staphylococcus aureus subsp. 
aureus USA300_TCH959]
 gi|253726890|gb|EES95619.1| bacteriophage envelope protein [Staphylococcus aureus subsp. 
aureus TCH130]
 gi|329732377|gb|EGG68727.1| hypothetical protein SA21193_1889 [Staphylococcus aureus subsp. 
aureus 21193]
 gi|334270512|gb|EGL88912.1| hypothetical protein SA21305_1197 [Staphylococcus aureus subsp. 
aureus 21305]
 gi|341842694|gb|EGS83929.1| hypothetical protein SA21266_0434 [Staphylococcus aureus subsp. 
aureus 21266]
 gi|341848102|gb|EGS89269.1| hypothetical protein SA21259_2320 [Staphylococcus aureus subsp. 
aureus 21259]
Length=129

 Score = 41.6 bits (96),  Expect = 0.042, Method: Compositional matrix adjust.
 Identities = 18/51 (36%), Positives = 27/51 (53%), Gaps = 0/51 (0%)

Query  96   DRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
            ++T +   L   Q GQT F  F      AG+ ++ +D++  TCTY  L DQ
Sbjct  70   NKTIVQDVLTRHQQGQTDFETFCDEMAEAGIYKWHIDIQAGTCTYIDLQDQ  120


>gi|171464324|ref|YP_001798437.1| hypothetical protein Pnec_1769 [Polynucleobacter necessarius 
subsp. necessarius STIR1]
 gi|171193862|gb|ACB44823.1| conserved hypothetical protein [Polynucleobacter necessarius 
subsp. necessarius STIR1]
Length=132

 Score = 41.2 bits (95),  Expect = 0.051, Method: Compositional matrix adjust.
 Identities = 18/63 (29%), Positives = 37/63 (59%), Gaps = 1/63 (1%)

Query  91   EVP-AFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQTYM  149
            E+P AF++  +++A+R  Q+ +  + EF      AG + Y+V +  R  +Y+G   + ++
Sbjct  67   EMPNAFNKDGVISAIRGAQSDRLRYPEFLELTMSAGCIGYIVWIAGRHVSYYGRRGEVHV  126

Query  150  EHY  152
            EH+
Sbjct  127  EHF  129


>gi|110640163|ref|YP_680373.1| hypothetical protein CHU_3798 [Cytophaga hutchinsonii ATCC 33406]
 gi|110282844|gb|ABG61030.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
Length=129

 Score = 40.8 bits (94),  Expect = 0.064, Method: Compositional matrix adjust.
 Identities = 30/104 (29%), Positives = 45/104 (44%), Gaps = 15/104 (14%)

Query  45   FPHLAETLRRAGVRTNTWWLPAMQSLYE-TDYGPVLDQGVPLIDGVAEVPAF------DR  97
            FP   + L   G++  T ++    ++Y  TD           I   A+ PAF      D+
Sbjct  20   FPSYIQELIGLGLKQYTQFVSDGHTIYSGTDN--------VTIQSEAKYPAFTIAEKADK  71

Query  98   TALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYF  141
              L   L   Q G T++  F   A  AGV  ++VD+ N TC Y+
Sbjct  72   AKLKQDLGIHQQGGTNYMTFCEQAAAAGVETWIVDMHNMTCIYY  115


>gi|49482578|ref|YP_039802.1| hypothetical protein SAR0345 [Staphylococcus aureus subsp. aureus 
MRSA252]
 gi|257424492|ref|ZP_05600921.1| conserved hypothetical protein [Staphylococcus aureus subsp. 
aureus 55/2053]
 gi|257427161|ref|ZP_05603563.1| conserved hypothetical protein [Staphylococcus aureus subsp. 
aureus 65-1322]
 36 more sequence titles
 Length=129

 Score = 40.8 bits (94),  Expect = 0.076, Method: Compositional matrix adjust.
 Identities = 17/54 (32%), Positives = 30/54 (56%), Gaps = 0/54 (0%)

Query  93   PAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
            P+ +++ +   L   Q GQT F  F     +AG+ ++ +D++  TCTY  L +Q
Sbjct  67   PSSNQSIVQDVLTRHQQGQTDFETFCDEMAQAGIYKWHIDIQAGTCTYIDLQEQ  120


>gi|82750059|ref|YP_415800.1| hypothetical protein SAB0298c [Staphylococcus aureus RF122]
 gi|82655590|emb|CAI79986.1| conserved hypothetical protein [Staphylococcus aureus RF122]
Length=129

 Score = 40.4 bits (93),  Expect = 0.082, Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 0/50 (0%)

Query  97   RTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
            +T +   L   Q GQT F  F      AG+ ++ +D+++ TCTY  L +Q
Sbjct  71   KTMVQNVLTRHQQGQTDFETFCDEMAEAGIYKWHIDIQSGTCTYIDLKEQ  120


>gi|283781878|ref|YP_003372633.1| hypothetical protein Psta_4123 [Pirellula staleyi DSM 6068]
 gi|283440331|gb|ADB18773.1| conserved hypothetical protein [Pirellula staleyi DSM 6068]
Length=134

 Score = 40.4 bits (93),  Expect = 0.084, Method: Compositional matrix adjust.
 Identities = 36/114 (32%), Positives = 49/114 (43%), Gaps = 17/114 (14%)

Query  45   FPHLAETLRRAGVRTNTWWLPAMQSLYETDYGPVLDQGVPLIDGVAEVP--------AFD  96
            FP + + L   GV        A  S  ET Y   L  G  L   V EVP         F 
Sbjct  23   FPQIVQQLISIGVE----RYHADYSRQETTY--YLTSGESL---VVEVPHEAQPTAMEFS  73

Query  97   RTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQTYME  150
             +A+  A+R  Q G+ S+R+F      AG + Y V L  R   YFG   ++++E
Sbjct  74   ASAVEQAVRQSQRGEHSYRDFVRKTQAAGCVGYFVQLTGRRVIYFGRCGESHVE  127


>gi|298693686|gb|ADI96908.1| hypothetical protein SAOV_0372c [Staphylococcus aureus subsp. 
aureus ED133]
Length=129

 Score = 40.0 bits (92),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 17/54 (32%), Positives = 29/54 (54%), Gaps = 0/54 (0%)

Query  93   PAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
            P+ +++ +   L   Q GQT F  F      AG+ ++ +D++  TCTY  L +Q
Sbjct  67   PSSNQSIVQDVLTRHQQGQTDFETFCDEMAEAGIYKWHIDIQAGTCTYIDLKEQ  120


>gi|323438807|gb|EGA96545.1| hypothetical protein SAO11_2326 [Staphylococcus aureus O11]
Length=129

 Score = 40.0 bits (92),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 17/54 (32%), Positives = 29/54 (54%), Gaps = 0/54 (0%)

Query  93   PAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
            P+ +++ +   L   Q GQT F  F      AG+ ++ +D++  TCTY  L +Q
Sbjct  67   PSSNQSIVQDVLTRHQQGQTDFETFCDEMAEAGIYKWHIDIQAGTCTYIDLKEQ  120


>gi|258424599|ref|ZP_05687476.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257845194|gb|EEV69231.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|341854486|gb|EGS95356.1| hypothetical protein SA21200_2310 [Staphylococcus aureus subsp. 
aureus 21200]
Length=129

 Score = 40.0 bits (92),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 17/54 (32%), Positives = 29/54 (54%), Gaps = 0/54 (0%)

Query  93   PAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
            P+ +++ +   L   Q GQT F  F      AG+ ++ +D++  TCTY  L +Q
Sbjct  67   PSSNQSIVQDVLTRHQQGQTDFETFCNEMAEAGIYKWHIDIQAGTCTYIDLKEQ  120


>gi|283469655|emb|CAQ48866.1| phage envelope protein [Staphylococcus aureus subsp. aureus ST398]
Length=129

 Score = 40.0 bits (92),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 17/54 (32%), Positives = 29/54 (54%), Gaps = 0/54 (0%)

Query  93   PAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
            P+ +++ +   L   Q GQT F  F      AG+ ++ +D++  TCTY  L +Q
Sbjct  67   PSSNQSIVQDVLTRHQQGQTDFETFCDEMAEAGIYKWHIDIQAGTCTYIDLKEQ  120


>gi|329847398|ref|ZP_08262426.1| hypothetical protein ABI_04620 [Asticcacaulis biprosthecum C19]
 gi|328842461|gb|EGF92030.1| hypothetical protein ABI_04620 [Asticcacaulis biprosthecum C19]
Length=130

 Score = 39.7 bits (91),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 0/50 (0%)

Query  103  ALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQTYMEHY  152
            A+RA Q+G   ++EF     +AG + Y+V L  R   Y+G   +T++E +
Sbjct  79   AVRASQSGAIKYKEFCLRILKAGCVAYLVSLAGRRAVYYGRTGETHIELF  128


>gi|341845840|gb|EGS87040.1| hypothetical protein SA21269_2205 [Staphylococcus aureus subsp. 
aureus 21269]
Length=129

 Score = 39.7 bits (91),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 17/54 (32%), Positives = 29/54 (54%), Gaps = 0/54 (0%)

Query  93   PAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
            P+ +++ +   L   Q GQT F  F      AG+ ++ +D++  TCTY  L +Q
Sbjct  67   PSSNQSIVQDVLTRHQQGQTDFETFCDEMAEAGIYKWHIDIQAGTCTYIDLKEQ  120


>gi|282915670|ref|ZP_06323441.1| hypothetical protein SATG_02391 [Staphylococcus aureus subsp. 
aureus D139]
 gi|283768077|ref|ZP_06340992.1| conserved hypothetical protein [Staphylococcus aureus subsp. 
aureus H19]
 gi|282320486|gb|EFB50825.1| hypothetical protein SATG_02391 [Staphylococcus aureus subsp. 
aureus D139]
 gi|283461956|gb|EFC09040.1| conserved hypothetical protein [Staphylococcus aureus subsp. 
aureus H19]
Length=129

 Score = 39.7 bits (91),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 17/54 (32%), Positives = 29/54 (54%), Gaps = 0/54 (0%)

Query  93   PAFDRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
            P+ +++ +   L   Q GQT F  F      AG+ ++ +D++  TCTY  L +Q
Sbjct  67   PSSNQSIVQDVLTRHQQGQTGFETFCDEMAEAGIYKWHIDIQAGTCTYIDLKEQ  120


>gi|21282053|ref|NP_645141.1| hypothetical protein MW0324 [Staphylococcus aureus subsp. aureus 
MW2]
 gi|49485228|ref|YP_042449.1| hypothetical protein SAS0324 [Staphylococcus aureus subsp. aureus 
MSSA476]
 gi|297209139|ref|ZP_06925538.1| bacteriophage envelope protein [Staphylococcus aureus subsp. 
aureus ATCC 51811]
 gi|300911140|ref|ZP_07128589.1| bacteriophage envelope protein [Staphylococcus aureus subsp. 
aureus TCH70]
 gi|21203489|dbj|BAB94189.1| conserved hypothetical protein [Staphylococcus aureus subsp. 
aureus MW2]
 gi|49243671|emb|CAG42095.1| conserved hypothetical protein [Staphylococcus aureus subsp. 
aureus MSSA476]
 gi|296886072|gb|EFH25006.1| bacteriophage envelope protein [Staphylococcus aureus subsp. 
aureus ATCC 51811]
 gi|300887319|gb|EFK82515.1| bacteriophage envelope protein [Staphylococcus aureus subsp. 
aureus TCH70]
Length=129

 Score = 39.7 bits (91),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 16/39 (42%), Positives = 22/39 (57%), Gaps = 0/39 (0%)

Query  108  QAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
            Q GQT F  F      AG+ ++ +D++  TCTY  L DQ
Sbjct  82   QQGQTDFETFCDEMAEAGIYKWHIDIQAGTCTYIDLQDQ  120


>gi|302332085|gb|ADL22278.1| putative bacteriophage envelope protein [Staphylococcus aureus 
subsp. aureus JKD6159]
Length=129

 Score = 39.3 bits (90),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 17/51 (34%), Positives = 27/51 (53%), Gaps = 0/51 (0%)

Query  96   DRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
            ++T +   L   Q GQT F  F      AG+ ++ +D++  TCTY  L +Q
Sbjct  70   NKTMVQDVLTRHQQGQTDFETFCDEMAEAGIYKWHIDIQAGTCTYIDLKEQ  120


>gi|344176620|emb|CCC87079.1| conserved hypothetical protein [Staphylococcus aureus subsp. 
aureus LGA251]
Length=129

 Score = 39.3 bits (90),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 0/50 (0%)

Query  97   RTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
            +T +   L   Q GQT F  F      AG+ ++ +D++  TCTY  L +Q
Sbjct  71   KTIVQDVLTRHQQGQTDFETFCNEMAEAGIYKWHIDIQAGTCTYINLKEQ  120


>gi|15923338|ref|NP_370872.1| hypothetical protein SAV0348 [Staphylococcus aureus subsp. aureus 
Mu50]
 gi|15926049|ref|NP_373582.1| hypothetical protein SA0336 [Staphylococcus aureus subsp. aureus 
N315]
 gi|148266835|ref|YP_001245778.1| hypothetical protein SaurJH9_0396 [Staphylococcus aureus subsp. 
aureus JH9]
 42 more sequence titles
 Length=129

 Score = 39.3 bits (90),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 17/51 (34%), Positives = 27/51 (53%), Gaps = 0/51 (0%)

Query  96   DRTALVTALRADQAGQTSFREFAAAAWRAGVLRYVVDLENRTCTYFGLHDQ  146
            ++T +   L   Q GQT F  F      AG+ ++ +D++  TCTY  L +Q
Sbjct  70   NKTIVQDVLTRHQQGQTDFETFCDEMAEAGIYKWHIDIQAGTCTYIDLKEQ  120



Lambda     K      H
   0.320    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129330420882


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40